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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257547" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFE4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759959", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFE4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FFE4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FFE4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein 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"MQKSVRYNEGHALYLAFLARKEGTKRGFLSKKAAEASRWHEKWFALYQNVLFYFEGEQSGRPAGMYLLEGCSCERTPAPPRTSAGPAGARDTLDKQYYFTVLFGHEGQKPLELRCEEEQAGKEWMEAIHQASYADILIEREVLMQKYIHLVQIVETEKIAANQLRHQLEDQDTEIERLKSEIVALNKTKERMRPYHSHQEDEDPDIKKIKKVQSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFAMVEAESEYVHQLYVLVNGFLRPLRMAASSKKPPISHDDVSSIFLNSETIMFLHEIFHQGLKARLANWPTLILADLFDILLPMLNIYQEFVRNHQYSLQVLANCKQNRDFDKLLKQYEANPACEGRMLETFLTYPMFQIPRYIITLHELLAHTPHEHVERKSLEFAKSKLEELSRVMHDEVSDTENIRKNLAIERMIVEGCDILLDTSQTFIRQGSLIQVPSVERGKLSKVRLGSLSLKKEGERQCFLFTKHFLICTRSSGGKLHLLKTGGVLSLIECTLIEEPDASDDDSKGSGHMFGHLDFKIVVEPRNAAPFTVVLLAPSRQEKAAWMSDISQCVDNIRCNGLMTIVFEENSKVTVPHMIKSDARLHKDDTDICFSKTLNSCKVPQIRYASVERLLERLTDLRFLSIDFLNTFLHTYRIFTTATVVLAKLSDIYKRPFTSIPVRSLELFFAASPNNRGEHMVDGKSPRLCRKFSSPPPLAVSRTSSPVRARKLSLTSSLNARIGALDLTTSSSSSSPTTHSPTSSPPPHAAPALESAPADRAGDSTELSPCRSPSTPRHLRYRQPGGQVSDNTHCSVSPASAFAIATAAAGHGSPPGFNNTERTCDKEFIIRRTATNRVLNVLRHWVSKHAQDFELNNELKMNVINLLEEVLKDPDLLPQERKATANILRALSQDDQDDIHLKLEDIIQMADCPKAECFETLSAMELAEQITLLDHIVFRSIPYEEFLGQGWMKLDKNERTPYIMKTSQHFNEMSNLVASQIMNYADISSRANAIEKWVAVADICRCLHNYNGVLEITAALNRSAIYRLKKTWAKVSKQTKALMDKLQKTVSSEGRFKNLRETLKNCNPPAVPYLGMYLTDLAFIEEGTPNFTEEGLVNFSKMRMISHIIREIRQFQQTAYRIDQQPKVIQYLLDKALIIDEDTLYELSLKIEPRLPA", 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"length": 1190, "header": "tr|A0A9J7FFE4-1|A0A9J7FFE4_CRIGR Isoform 1 of Ras-specific guanine nucleotide-releasing factor 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100759959 PE=4 SV=1 CANONICAL=A0A9J7FFE4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FFI1-1", "uniprot_ac": "A0A9J7FFI1", "uniprot_id": "A0A9J7FFI1_CRIGR", "mass": { "chemical_mass": 18246.0, "monoisotopic_mass": 18246.0 }, "refseq": { "ac": "XP_027255358", "name": "CD164 sialomucin-like 2 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255358" }, "gene_names": [ { "name": "Cd164l2", "type": "recommended", "evidence": [ { "id": "A0A9J7FFI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1" } ] }, { "name": "Cd164l2", "type": "synonym", "evidence": [ { "id": "XP_027255358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255358" } ] } ], "protein_names": [ { "name": "CD164 sialomucin-like 2 protein", "type": "synonym", "evidence": [ { "id": "XP_027255358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255358" }, { "id": "A0A9J7FFI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255358", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255358" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cd164l2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FFI1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FFI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759840", "url": "https://www.ncbi.nlm.nih.gov/gene/100759840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759840", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFI1", "url": "https://www.orthodb.org/?gene=A0A9J7FFI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11337:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11337:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05283", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05283", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255358", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255358", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPGPRALRAALCGGCCCLLLCAQLVLAGKGARGFGRGALIRLNIWPTAQGACKHLAHCERCVDRAHNLSICVWQQCGLEEPGHCVAQAEVLKEGCSLYNRSESCPAFHHHPTHEPEMSTTGSPPVPETHSSGFDGASFIGGIVLVLSLQATAFFVMRFLKAKDSTYQTL", "length": 171, "header": "tr|A0A9J7FFI1-1|A0A9J7FFI1_CRIGR Isoform 1 of CD164 sialomucin-like 2 protein OS=Cricetulus griseus OX=10029 GN=Cd164l2 PE=3 SV=1 CANONICAL=A0A9J7FFI1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI1/entry#A0A9J7FFI1-1", "sequence": { "sequence": "MAAPGPRALRAALCGGCCCLLLCAQLVLAGKGARGFGRGALIRLNIWPTAQGACKHLAHCERCVDRAHNLSICVWQQCGLEEPGHCVAQAEVLKEGCSLYNRSESCPAFHHHPTHEPEMSTTGSPPVPETHSSGFDGASFIGGIVLVLSLQATAFFVMRFLKAKDSTYQTL", "length": 171, "header": "tr|A0A9J7FFI1-1|A0A9J7FFI1_CRIGR Isoform 1 of CD164 sialomucin-like 2 protein OS=Cricetulus griseus OX=10029 GN=Cd164l2 PE=3 SV=1 CANONICAL=A0A9J7FFI1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027256187.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256187" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mllt3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FFJ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FFJ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16906", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16906", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768593", "url": "https://www.ncbi.nlm.nih.gov/gene/100768593", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768593", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768593", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFJ8", "url": "https://www.orthodb.org/?gene=A0A9J7FFJ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47827:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47827:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17793", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17793", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256187", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPKKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSASSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKDSSSKKPKENKPLKEEKIVPKMAFKEPKPMSKEPKADSNLLTITSGQQDKKAPSKRPPVSDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVDPNDSDVEENMSSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEAEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS", "length": 571, "header": "tr|A0A9J7FFJ8-1|A0A9J7FFJ8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein AF-9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mllt3 PE=4 SV=1 CANONICAL=A0A9J7FFJ8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8/entry#A0A9J7FFJ8-1", "sequence": { "sequence": "MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPKKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSASSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKDSSSKKPKENKPLKEEKIVPKMAFKEPKPMSKEPKADSNLLTITSGQQDKKAPSKRPPVSDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVDPNDSDVEENMSSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEAEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS", "length": 571, "header": "tr|A0A9J7FFJ8-1|A0A9J7FFJ8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein AF-9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mllt3 PE=4 SV=1 CANONICAL=A0A9J7FFJ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768593", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768593", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "transcription elongation factor complex", "id": "GO:0008023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FFJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFJ8" }, { "id": "PS51037", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "YEATS", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 138, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 227, "end_pos": 229 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 543, "end_pos": 545 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FFQ6-1", "uniprot_ac": "A0A9J7FFQ6", "uniprot_id": "A0A9J7FFQ6_CRIGR", "mass": { "chemical_mass": 72836.0, "monoisotopic_mass": 72836.0 }, "refseq": { "ac": "XP_027249960", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249960" }, "gene_names": [ { "name": "LOC113834402", "type": "recommended", "evidence": [ { "id": "A0A9J7FFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6" } ] }, { "name": "LOC113833328", "type": "synonym", "evidence": [ { "id": "XP_027249960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249960" }, { "id": "A0A9J7FFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6" } ] }, { "name": "LOC113837150", "type": "synonym", "evidence": [ { "id": "A0A9J7FFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027249960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249960" }, { "id": "A0A9J7FFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249960", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249960" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834402", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6", "locus": {} } ], "crossref": [ { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113834402", "url": "https://www.ncbi.nlm.nih.gov/gene/113834402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833328", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833328", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:113834402", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834402", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:113837150", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFQ6", "url": "https://www.orthodb.org/?gene=A0A9J7FFQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249960", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249960", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVGPNIVIADQRSPTHFQVPKPPTVPKAITPTPGAVTFSPTPDALNIEITRDPPGTRDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPSSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLEKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7FFQ6-1|A0A9J7FFQ6_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113834402 PE=4 SV=1 CANONICAL=A0A9J7FFQ6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFQ6/entry#A0A9J7FFQ6-1", "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVGPNIVIADQRSPTHFQVPKPPTVPKAITPTPGAVTFSPTPDALNIEITRDPPGTRDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPSSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLEKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7FFQ6-1|A0A9J7FFQ6_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113834402 PE=4 SV=1 CANONICAL=A0A9J7FFQ6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { 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"https://www.ncbi.nlm.nih.gov/protein/XP_027241538" }, "gene_names": [ { "name": "Spata21", "type": "recommended", "evidence": [ { "id": "A0A9J7FFZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2" } ] }, { "name": "Spata21", "type": "synonym", "evidence": [ { "id": "XP_027241538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241538" } ] } ], "protein_names": [ { "name": "Spermatogenesis-associated protein 21", "type": "synonym", "evidence": [ { "id": "A0A9J7FFZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis-associated protein 21", "type": "synonym", "evidence": [ { "id": "XP_027241538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241538" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616896.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027241538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241538" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FFZ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FFZ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] 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"MENRNTQTHPENKEEAPAVQSSTGLSSTKKKTDLEPTVSVTQAGLADAKENDSRKHPVVPSGSERELRHRRSSHEGSGEPETREQRPFSRAENQSSLATKEGPRDLQAGQAQAQPGGECVTSEEQPWPTKDQQERWQSAEAKNIHPTESYQTLALPTQGNTDHRVEKPCTSDSKSQPPKGDHPPEAHLLQVKLQEPMPTPSSRTHKDSLHVAVAPKPKATVEEKKAPPTLPTAPGPRTHKEGGEAAETKAAARPLSSPEERDIEKKELGQGQKQRQALAAIGTQGPGNSRRGFMKCLLEVEEQEEATHRRTLKTRTLTTRRSPRTLTSVSTPGPISSSVPTLPLTLLEMSTSAPSTVPVWVRPPAPGQAPASVGSPSSVLSAPTQDLNWRWPEFLPQSSERSLNYAKTRQESEEHGLFKLYQNWEERSEEHLTLKQEEAFRSYFEIFNGPGEVDARSLKNIMLLIGFNLTPSQVEEALMSADVNGDGHVDFKDFLAVMTDTKRFFCSVEQNVLMDMSPPNPYTLFFEILSLLVEMLALPEVALEEITNYYQKKLKEGTSKTRDTESTAGGLRSRKKLSYNSHQVETIEVPERRVLRILSRLKQQNYAANLQSPYAQVPCIPLCPRLEKKVVRRKQGSHNHPVLDQCVSTSLGPDLHSLFFQSGQQGSREHSSDSRKWLSSVPARTH", "length": 686, "header": "tr|A0A9J7FFZ2-1|A0A9J7FFZ2_CRIGR Isoform 1 of Spermatogenesis-associated protein 21 OS=Cricetulus griseus OX=10029 GN=Spata21 PE=4 SV=1 CANONICAL=A0A9J7FFZ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2/entry#A0A9J7FFZ2-1", 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"prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7FG27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C1orf185 homolog", "type": "synonym", "evidence": [ { "id": "XP_027258081", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258081" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258081", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258081" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf185", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27", "locus": {} } ], "crossref": [ { "id": "A0A9J7FG27", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FG27", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759862", "url": "https://www.ncbi.nlm.nih.gov/gene/100759862", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759862", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759862", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FG27", "url": "https://www.orthodb.org/?gene=A0A9J7FG27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37858", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37858", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37858:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37858:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15842", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15842", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258081", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258081", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FG27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTGFINHLTYFLAAGAVSLGIGFFALASALWFLICKRREIFQSPKVKSTDEKVMQGPPKSKIKSHSQCVFISRNFHAGRSQPKVEQREREAPQIKAINSKGEFCPLAPAVHESPEMISVANASSVTLSLSTSVSSSYCSQSVEAADDWFSDDSLENKNAPEPLLGESLAEKVFAYLSTISLEEWPGTTMNVTFCGDQNDDSIKEKFLQRNAEVGTHNLQDDIE", "length": 224, "header": "tr|A0A9J7FG27-1|A0A9J7FG27_CRIGR Isoform 1 of Uncharacterized protein C1orf185 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf185 PE=4 SV=1 CANONICAL=A0A9J7FG27-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FG27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG27/entry#A0A9J7FG27-1", "sequence": { "sequence": "MSTGFINHLTYFLAAGAVSLGIGFFALASALWFLICKRREIFQSPKVKSTDEKVMQGPPKSKIKSHSQCVFISRNFHAGRSQPKVEQREREAPQIKAINSKGEFCPLAPAVHESPEMISVANASSVTLSLSTSVSSSYCSQSVEAADDWFSDDSLENKNAPEPLLGESLAEKVFAYLSTISLEEWPGTTMNVTFCGDQNDDSIKEKFLQRNAEVGTHNLQDDIE", "length": 224, "header": "tr|A0A9J7FG27-1|A0A9J7FG27_CRIGR Isoform 1 of Uncharacterized protein C1orf185 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf185 PE=4 SV=1 CANONICAL=A0A9J7FG27-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615258.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003511944.1. 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PE=3 SV=1 CANONICAL=A0A9J7FG79-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG79/entry#A0A9J7JFY6-1", "sequence": { "sequence": "MGTTTNNYNVYNKTIDCNSVSIQHKRIYTKEKPCKCKECGKGLSSYRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTCSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKSHQKIHNGEKPYKCDECGRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFENKPARIAEKTYKCGECGKCFALSASLSRHQRIHSEDKSHKCAECGKTFYLFSILQEHQRVHTGEKPYKCDECGKCFFSASSLKRHQRIHCDDNPYKCEECGRCFHSWSALRVHHLVHSGEKPYKCEECHKAFRYHVSLKNHRAAHTREKIYKCELSRKGFTNPALLIEDKTAHTAEKAYKCEECGKCFASSASLTHHQKIHSEDKSHKCAECGKRFCSFSHFQDHQRVHTGVKPYKCEECDKCFFSSSSLRKHQRIHCDDNPYKCEVCGRCYHSWSDLRGHETVHTGEKPYKCEECHKAYGHISSLRRHRRVHTAEKPCSNDFSLQ", "length": 538, "header": "tr|A0A9J7JFY6-1|A0A9J7JFY6_CRIGR Computationally mapped isoform of Zinc finger protein 99 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751304 PE=3 SV=1 CANONICAL=A0A9J7FG79-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25570", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25570", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512882", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512882", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K243", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K243", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K243-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K243-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPTARHLSLPSGLLELCALLGASQDSLRGLEQIGQKRGLKSVSSLAPEVLSVFVPPFTTQDDGQVSENSCMLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1278, "header": "tr|A0A9J7FG86-1|A0A9J7FG86_CRIGR Isoform 1 of DENN domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FG86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86/entry#A0A9J7FG86-1", "sequence": { "sequence": "MAEPTARHLSLPSGLLELCALLGASQDSLRGLEQIGQKRGLKSVSSLAPEVLSVFVPPFTTQDDGQVSENSCMLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1278, "header": "tr|A0A9J7FG86-1|A0A9J7FG86_CRIGR Isoform 1 of DENN domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86/entry#A0A9J7GRT1-1", "sequence": { "sequence": "MLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1206, "header": "tr|A0A9J7GRT1-1|A0A9J7GRT1_CRIGR Computationally mapped isoform of DENN domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86/entry#A0A9J7GRY8-1", "sequence": { "sequence": "MLPYQGAWTSLPCPSCASQDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1132, "header": "tr|A0A9J7GRY8-1|A0A9J7GRY8_CRIGR Computationally mapped isoform of DENN domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86/entry#A0A9J7GV60-1", "sequence": { "sequence": "MAEPTARHLSLPSGLLELCALLGASQDSLRGLEQIGQKRGLKSVSSLAPEVLSVFVPPFTTQDDGQVSENSCMLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKSPEPPDAPRLAPCPPELQHRLERGPRPSTSLAADSQLQDPAYQPAAARRHLQHTAHLLVAREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1246, "header": "tr|A0A9J7GV60-1|A0A9J7GV60_CRIGR Computationally mapped isoform of DENN domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K243-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86/entry#A0A9J7K243-1", "sequence": { "sequence": "MAEPTARHLSLPSGLLELCALLGASQDSLRGLEQIGQKRGLKSVSSLAPEVLSVFVPPFTTQDDGQVSENSCMLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCSSLSTSLLRGCS", "length": 1139, "header": "tr|A0A9J7K243-1|A0A9J7K243_CRIGR Computationally mapped isoform of DENN domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Dennd3 PE=4 SV=1 CANONICAL=A0A9J7FG86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774715", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774715", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NUL1-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "DENND3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEDALPSGLLEVCLLVGVPREQLRTQLQDAQRKPRSLLPLDPEVLSVFVPPLISRDDIHSTNTSGSNFNRGKRRSFRKKKERPKLENAKTVNGEQKAPGTEDITVPKDIDLIGLPQLCFPGGLFITSEPREDHIHFLVFTDVCGNRTYGVVAQYYQPMQDGCIASNGQTQWESVRAGKKPGCFVPLAICVISRYPYFNALKDCLSCLLVQLRSVKDLDIDDHIKEFAAKLFLIPSPPPGPLHLVFNMKPLQIIIPSREDPDSPVIDLDLHLPLLCFKPEQVLQIMTCILTERKMVFFSSDWALLTLVAECFMLYLHPLQWQHTFVPLLSRHMLDFVMAPTSFLMGCHADHFEEVSTEGEDLILINIDDGNISHSKMVEEEPEIPDVPAQAAETFKKRVESLQLHYDLELCHLRATTDLGELQMRRRAWQQKLNTEVQQMTLQLIVNIFREVKDHLNYEHRVFNSEEFLKTRATGDQPFYGKVLETYMFHSFLKARLNRKMDAFARLELSTQSEEDRFNLMFRAPRRLTMEKMASKRFNSQNIINRRMVISMPNLQDIKLPESPTRKSSLRRIETSIAMKKPSKSVSTFKIPEIHFPLMSHCVHSYYTEFFNHLSKAINTLAPDNSALLARYFYLRGLISLMQGKLLNALSDFQNLDKTDLRIFPTELVRKIVETLPPSERFQADRKPELKRLISLVMEQQREVTKIDDHVKHFELPKTHMQLHDFVKRIQESGIVRDTDTIHRLFDALTVGQQKQIDPETFRDFYNYWKETEAEAQEVNLPPAVIEHLDKNECVYKLSCSVKTNYGVGKIALTQKRLFLLTEGGRPGYVHIAAFREIEDVKNTTVAFLLLRIPTLRIETIYKKQVFEANLKTECDLWYLIVKEMWAGKKMADDHKDPQYIQQALTNVLLMDAVVGALQSSKAIYAASKLSYFDRMKNEVPMMIPKTTSETLKHKINPSAGETFPQAIDVLLYTPGHLDISERPDNAHPKLWCALNEGKVVVFDASTWTIQQHCFRMGRCKLTCMVMVEQSQVWIGSQDSIIYIINTHSMSCNKQLNDHRSGITDIVVEKRNGIPSEAYSSSLDGTVIAWNINTLKVNRAFQLPCQNLTSIKLHNDQLWCCTGSCIFVMSTYEFRLQMKIEHHLKDVCSYFLCFQLFPERNEVWASYSGSSDLYIWNTKDFASTPQKIHLQDCSEITCMIQVKNQMWVGSSGTSQGKIKGKIYVISAEKKTVEKELFGHADTVKALCSAEDRYVLSGAGKEEGKIAIWKVE", "length": 1270 }, "evidence": [ { "id": "A0A9J7FG86", "url": "https://omabrowser.org/oma/group/A0A9J7FG86/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A287AF91-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "DENND3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAEAAPQHLELPWGLLELCALLGPPRDSLRGPEQGAQKKGAKSPPSLAPEVLSVFVPPFVSKEDSAAAAAGASSGTLGKAKRRSFRRKRDRPRAEPGRGPRGAEPEDASIPDGVDLLALPQLCFPGGVRVASEPEEDRVHFLVLTDVCGNRTHGVVAQYYRPLHDKHCFYNGKTQWEASGPSGGAAGCFVPFAVCVVSRFPYYNALKDCLSCLLTHLKLCKDFEVDNHIKDFAAKLSLIPSPPPGPLHLVFNMKPLQIVFPSRADPESPLVDLDLHLPLLCFRPEKVLQILTCLLTERRLVFFSSSWALLTLVAECFMAFLHPLQWQHTFVPILSRQMLDFVMAPTSFLMGCHLDHFAEVSKEADGLILINIDTGSITSSNSEDADVPDIPLLAAQTFIQSIQSLQLHHELHLAHLCASTDLNEGRASRRAWQHRLNCQIQQISLQLLVSIFREVKNHLNYEHRVFNSEEFLKTRAPGDQQFYKQVLETYMFHAFLKARLSRRMDAFAQMELHTQSEEDRINGTLLSPRRPTIEKMASRKSTLLQAAPRRKVVSMPDLQVIAVPELLPRNSSLRKIHTADGGGSHAAVSLALQPTYTFKIPEVHFPLLAQCVQVFYEDCVAQLSKAMVSLAPENSVLLARYFYLRGLVQLMQGRLLGALLDFQSLYKTDVHIFPADLVQRTVESLSGPERTQAERMPELRRLISEVMDKPVDAPKADDRVKNFELPKTHLQLDDFVKRVQESGVVKDTGVIHRLFEALTVGQQKQIDPETFREFYNCWKEAEAEAQEVSLPLSALEHLDKNECVYKLSSSVKTSLGVGKIAMTQKRLFLLTEGRPGYVEIATFRDMEEVRSTTVAFLLLRIPTLKIKTASKKEVFEANLKTECDLWHLMVKEMWAGKKLADEHKDPQYVQQALTHVLLMDAVVGTLQSPGAIYAASKLSHFDKLRSEMPMVVPKTTSETLKHKINPSAGETAPRAVDVLLYTPGHLDPAEKVEDAHPKLWCALNGGKVVVFDASSWTIHQHCFKVGNSKLNCMVMVEQSQVWVGSEDSVIYIINVHSMSCHKQLTDHRASVTGLVVQDGAPSAVYSCSADGTVLAWNVSSLRVTSRFQVPGDGLSSITLYRDRLWCCAGNSIVVMTANGFLRQELKIDEGFKDRSAFLAFQLLHEQEQLWAACSRYDSIYVWSLEDLARPPQRVCLRDCSAITCMIRVKQQIWVGGTGLSQGRPKGKIYVIDAERRTVEKELVAHADTVKTLCSAEDRYVLSGSGCEEGKIAIWKVE", "length": 1277 }, "evidence": [ { "id": "A0A9J7FG86", "url": "https://omabrowser.org/oma/group/A0A9J7FG86/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8M9P256-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "dennd3a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADNVPCGLLEACVLLGVSNERLKELCPGKDADVLVEAEVLQVHAPPFITKDRSCNGGVDQGVAPAFSRVQKRRSFKKKKRERPVSTLSNSSQASESEELSVPQNIDLIALPQLCFPDGLRITNESREDSYHFLVFTDVFGNQTHGVVAQYCRPVQFQQDNVIYANGHRTNEHKRLYTTFSICVISKYPYYNALRDCLSCFLFQMKTSRVSDFDEQVKEFSAKLALVPIPPSGPLHVVFNLRPLQIELPSRLDVDRPVMDLDLHLPFLCFKPKQILQIISSILMEQRVVFLSTDWAKLTLVSECFMIFIHPLRWQHPFVPVLSRQMLDFIMAPTAYLMGCHTYHFQEVAEEIEDLVLIDIDQGTVSSSTSDRFDLPDVPLAARDCFIFRCGGLQLHYDLDVCGSSSQTDVNDLRAHRRLWQRKLNSSILNISMELIVNIFSEVCDFLNYEHRVFNSEEFLRSRDSTDSAFYRKVLDTHIFHSFLRERLNRKNDAFTRMQLNIRSETRRLKIMTESPRRPTMEEINRKHRAENGLNKRLGMSMPNLADSRSLTVPIRQMSMMSVRMPLQMGSWSPIKPVKTFKLPEFPPPLAYHYVQNYYHDLIGQLDRSISSASPDDSALLARYYYLRGLVNSVTGRHVDALADFQSLYKTDMEIFPAQLLNTLVEALPVEEKRIAERRTDLKRLMSRVRRENEKDRARLVDGGTVKRFELPKKHLQKEDFVRRVQESGIVKDLETIKRLFEALTLGVEDSCRSVFYLELDGQVKQVDPETFRFFYNFWKETEAAAQDVDLPAVVLEHLENDECVYKVSSSVKTSHGVGKIAMTQRRLFLLTEGRPGYVEITKFRDIEDVRISSAPFLLLRIPSLKIRTSLRRESFEANLKSECDLWHLMIKEMWAGRKMADQHKDPQFMEQALTNALLMDAVVGSLQSQKAIYAATKLAYFDKMKSEVPMMVPKTTSDTLKHKINPSLDQTSPQAVDVLLYTPGQLGVSDVDGGGNPKLWCALSDGKLLVFDAASWSMQHNSVQVGTSRLTCMLAVNEQQLWIGSKDSFIYIINPRSVSCNKQLTEHRCELTGLALEERADKFSQTVAYSCSEDCNVIVWDVSSLQVRRQFRVSCGRLQSMHVHNGMLWCCGRDCVLEVRRNGSVHRRISLPDHLLSSPKGFSSFLLFNESEQLWAGFADAGELCVWHCRDISKPFIRIQLKDCAAVTCMIRVKNQIWVGGYNGSVTDRRVRGKIYIVNTDRYTVEKELQAHADAVQTMCSAEDRYVLSGAAQDDGKIGIWKVE", "length": 1285 }, "evidence": [ { "id": "A0A9J7FG86", "url": "https://omabrowser.org/oma/group/A0A9J7FG86/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2RT67-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "Dennd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPAARHLSLPSGLLELCALLGASQDSLRGLEQIAQKRGVKSASSLVPEVLSVFVPPFTTKEDGQVPGASCALGKGRRRSFRKKREKPRMEPWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGCVCVASEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKSHWEPSVISARCFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPSPPPGPLHLIFNMKPLQVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLMAECFVAYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDHGSVTCSKSSDDNIDIPDVPLLLAQTFIQRVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQTLNCKIQHITLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMASRKASPLHITHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDIHFPLESQCVQAYYTDFVTLLSKAMALLGPGDSLLLARYFYLRGLLHLMQGQLLSALLDFQNLYKTDIGIFPADLVKRTVESMSASERAQAERTPELRRLITEVFDKHGEAPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTFGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLMEHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLTEGRPGYVEIATFRNIEEVKNSTVAFLLLRIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKQLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIHAASKLAYFDNMKKKSPMAVPKTTSETLKHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTVHQHCFKVGSSKVNCMVMAEHNQVWVGSEDSVIYIINVHSMSCNKQLTDHRSPVTGLAVHNGKKPSEIYSCSLDGTVIAWNVSTLRVISRFQLSYGDLLSISLHNDRIWCCTVHKILVVTPQGFVRQELKHPKDASFLAFQLLPEEQQLWAASTGVSELYMWSLKDLDQPPQKTYLQDCSEVTCMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTVEKELVAHLDTVRTLCSAEDRYVLSGAGQEEGKIAIWKVE", "length": 1274 }, "evidence": [ { "id": "A0A9J7FG86", "url": "https://omabrowser.org/oma/group/A0A9J7FG86/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A2H4-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "Dennd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTPGFVRSHWKPRAGHPAAARHSACHLFCFSAFGPPGPRRARPAAPDPAASRAPAPRPPQPSGPGLTRSEAGARWGPCPPKPAPRPAPPNALSPRLRGLEQIAQKRGVNGASSLVPEVLSVFVPPFTTKEDGQVVGASCTLSKGRRRSFRKKREKPRMESWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVASEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKSHWEPSMSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPSPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRMVFFSSDWALLTLMAECFVAYVHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDLGSVTCSKSSDEDVDIPDVPLLLAQAFIQRVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQALNCKIQHITLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMASRKASPLNIAHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSPVLKVTPKSTYTFKIPEIHFPLVSQCVQAYFTDLVTLLSKAMALLGPGDSLLLARYFYLRGLIHLMQGQLLNALLDFQSLYKTDIRIFPADLVKGMVDSMSASERAQAERTPELRRLITEVFDKQGEAPKVDDAVKNFELPKKHMQLNDFVKRVQESGIVKDTTIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLVDHLDRNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPSYVEIATFRNIEEVKSTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSSGAIYAASKLAYFDKMKNELPMAVPKTTSETLKHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGSSKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRSAVTGLAVPSGKKPSAVYSCSLDGTVLAWNVSTLRVISRFQLQHGDLMSISLHNDRVFCCTARSILVVTLQGFVRQELRIQPSEEPSASFLAIQLLPEEQQLWVACTGVSELYIWSLKDLGQPPQKTHLQDCTEVTCMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTLEKELVAHSDTVRTLCSAEDRYVLSGAGGEEGKIAIWKVE", "length": 1345 }, "evidence": [ { "id": "A0A9J7FG86", "url": "https://omabrowser.org/oma/group/A0A9J7FG86/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of Rab protein signal transduction", "id": "GO:0032483", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032483", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 851, "end_pos": 853, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FG86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG86" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 506, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 151, "end_pos": 153 }, { "start_pos": 570, "end_pos": 572 }, { "start_pos": 851, "end_pos": 853 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FG95-1", "uniprot_ac": "A0A9J7FG95", "uniprot_id": "A0A9J7FG95_CRIGR", "mass": { "chemical_mass": 49031.0, "monoisotopic_mass": 49031.0 }, "refseq": { "ac": "XP_027255777", "name": "LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 38-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255777" }, "gene_names": [ { "name": "LOC113833884", "type": "recommended", "evidence": [ { "id": "A0A9J7FG95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95" } ] }, { "name": "LOC113833884", "type": "synonym", "evidence": [ { "id": "XP_027255777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255777" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 38-like", "type": "synonym", "evidence": [ { "id": "XP_027255777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255777" }, { "id": "A0A9J7FG95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255777" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833884", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95", "locus": {} } ], "crossref": [ { "id": "A0A9J7FG95", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FG95", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833884", "url": "https://www.ncbi.nlm.nih.gov/gene/113833884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833884", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833884", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FG95", "url": "https://www.orthodb.org/?gene=A0A9J7FG95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255777", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FG95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLDSLGHCPGVGAKVTRVLLADMRVALRAHAPDTPYANRSRDRSPNLVLSTAGQVRATGPTSPPEWGRAGLAPRSLPMPWNVPEGQFPVPVNSAPSASPLPPPSLLPGHPRSLCPRHTLIAPARPGAASLPRAAALGRPEPGSQGPAAPTAPRAVSARVPGAMSLCAVPRRPTGAAAALGLGSLLMLLGPGRACPEGCACTDPHTVDCSDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEDFFIFHGDLVYLDFRNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNHLAGVHEAAFESLESLQVLELNDNNLRSLNVATLDALPALRTVRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDAIQCSLPMEDRRVALRELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATVVQCFQRCAPNKDTEDEDDDEDD", "length": 461, "header": "tr|A0A9J7FG95-1|A0A9J7FG95_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 38-like OS=Cricetulus griseus OX=10029 GN=LOC113833884 PE=4 SV=1 CANONICAL=A0A9J7FG95-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FG95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG95/entry#A0A9J7FG95-1", "sequence": { "sequence": 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FGC2-1", "uniprot_ac": "A0A9J7FGC2", "uniprot_id": "A0A9J7FGC2_CRIGR", "mass": { "chemical_mass": 139716.0, "monoisotopic_mass": 139716.0 }, "refseq": { "ac": "XP_027256850", "name": "SR-related and CTD-associated factor 8 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256850" }, "gene_names": [ { "name": "Scaf8", "type": "recommended", "evidence": [ { "id": "A0A9J7FGC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2" } ] }, { "name": "Scaf8", "type": "synonym", "evidence": [ { "id": "XP_027256850", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256850" } ] } ], "protein_names": [ { "name": "SR-related and CTD-associated factor 8 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027256850", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256850" }, { "id": "A0A9J7FGC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256850", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256850" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Scaf8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FGC2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FGC2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12462", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12462", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17004", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17004", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774924", "url": "https://www.ncbi.nlm.nih.gov/gene/100774924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774924", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774924", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGC2", "url": "https://www.orthodb.org/?gene=A0A9J7FGC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256850", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256850", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRV7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKQVTPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDAGFGGLVLPGGSVASSLAPSALPAGNVFNPPNKAEPEEKVPHLTEHQIPSAENTRPVIPNDIPSSAAMLAQPPGPANTSGILCVQRPNVSSNSEILGVRPANVSSSAAIIGAQPPNILNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLMGTQPPIGPQNLPPLTIPAQRVPALPMLDIRPGLIPQAPGPRFPLLQPGIPPQRGIPPPAVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRIPLGNDSIQQEGDRDYRFPPVETREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRAPVDMRENLGRPGLDHLGRRDHFGFPPEKPWGLRDFDEREHRVLPVFGGPKGLHEERGRFRAGSYRFDPRSGPWNRGFGQDVPRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENVPQVNGENTERHAQPPPLPVQKDPELYDKLASSGDIDKEESGTVAGVESEAVVVESTETEGT", "length": 1270, "header": "tr|A0A9J7FGC2-1|A0A9J7FGC2_CRIGR Isoform 1 of SR-related and CTD-associated factor 8 isoform X4 OS=Cricetulus griseus OX=10029 GN=Scaf8 PE=4 SV=1 CANONICAL=A0A9J7FGC2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2/entry#A0A8C2MRV7-1", "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKVTPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDAGFGGLVLPGGSVASSLAPSALPAGNVFNPPNKAEPEEKVPHLTEHQIPSAENTRPVIPNDIPSSAAMLAQPPGPANTSGILCVQRPNVSSNSEILGVRPANVSSSAAIIGAQPPNILNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLMGTQPPIGPQNLPPLTIPAQRVPALPMLDIRPGLIPQAPGPRFPLLQPGIPPQRGIPPPAVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRIPLGNDSIQQEGDRDYRFPPVETREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRAPVDMRENLGRPGLDHLGRRDHFGFPPEKPWGLRDFDEREHRVLPVFGGPKGLHEERGRFRAGSYRFDPRSGPWNRGFGQDVPRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENVPQVNGENTERHAQPPPLPVQKDPELYDKLASSGDIDKEESGTVAGVESEAVVVESTETEGT", "length": 1269, "header": "tr|A0A8C2MRV7-1|A0A8C2MRV7_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 8 isoform X5 OS=Cricetulus griseus OX=10029 GN=Scaf8 PE=4 SV=1 CANONICAL=A0A9J7FGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2/entry#A0A9J7FGC2-1", "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKQVTPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDAGFGGLVLPGGSVASSLAPSALPAGNVFNPPNKAEPEEKVPHLTEHQIPSAENTRPVIPNDIPSSAAMLAQPPGPANTSGILCVQRPNVSSNSEILGVRPANVSSSAAIIGAQPPNILNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLMGTQPPIGPQNLPPLTIPAQRVPALPMLDIRPGLIPQAPGPRFPLLQPGIPPQRGIPPPAVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRIPLGNDSIQQEGDRDYRFPPVETREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRAPVDMRENLGRPGLDHLGRRDHFGFPPEKPWGLRDFDEREHRVLPVFGGPKGLHEERGRFRAGSYRFDPRSGPWNRGFGQDVPRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENVPQVNGENTERHAQPPPLPVQKDPELYDKLASSGDIDKEESGTVAGVESEAVVVESTETEGT", "length": 1270, "header": "tr|A0A9J7FGC2-1|A0A9J7FGC2_CRIGR Isoform 1 of SR-related and CTD-associated factor 8 isoform X4 OS=Cricetulus griseus OX=10029 GN=Scaf8 PE=4 SV=1 CANONICAL=A0A9J7FGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2/entry#A0A9J7FHN1-1", "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKQVTPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDAGFGGLVLPGGSVASSLAPSALPAGNVFNPPNKAEPEEKVPHLTEHQIPSAENTRPVIPNDIPSSAAMLAQPPGPANTSGILCVQRPNVSSNSEILGVRPANVSSSAAIIGAQPPNILNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLMGTQPPIGPQNLPPLTIPAQRVPALPMLDIRPGLIPQAPGPRFPLLQPGIPPQRGIPPPAVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRIPLGNDSIQQEGDRDYRFPPVETREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRAPVDMRENLGRPGLDHLGRRDHFGFPPEKPWGLRDFDEREHRVLPVFGGPKGLHEERGRFRAGSYRFDPRSGPWNRGFGQDVPRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENVPQVNGENTERHAQPPPLPVQKDPELYDKLASSGDIDKEESGTVAGVESEAVVVESTETEGT", "length": 1216, "header": "tr|A0A9J7FHN1-1|A0A9J7FHN1_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 8 isoform X6 OS=Cricetulus griseus OX=10029 GN=Scaf8 PE=4 SV=1 CANONICAL=A0A9J7FGC2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 166, "start_aa": "Thr", "end_pos": 166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr166", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774924", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774924", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGC2" } ], "pmid": "" }, { "name": "RNA polymerase II C-terminal domain phosphoserine binding", "id": "GO:1990269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990269", "evidence": [ { "database": 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"https://www.ncbi.nlm.nih.gov/protein/XP_027259574" }, "gene_names": [ { "name": "Trappc9", "type": "recommended", "evidence": [ { "id": "A0A9J7FGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" } ] }, { "name": "Trappc9", "type": "synonym", "evidence": [ { "id": "XP_027259574", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259574" } ] } ], "protein_names": [ { "name": "Trafficking protein particle complex subunit 9 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9/entry#names_and_taxonomy" } ] }, { "name": "trafficking protein particle complex subunit 9 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027259574", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259574" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259574", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259574" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trappc9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FGG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FGG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770948", "url": "https://www.ncbi.nlm.nih.gov/gene/100770948", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058564", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058564", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770948", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770948", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGG9", "url": "https://www.orthodb.org/?gene=A0A9J7FGG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21512", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21512", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21512:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21512:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26251", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26251", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26254", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26254", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26280", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26280", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26283", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26283", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259574", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259574", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FGG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JET6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JET6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JET6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JET6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVTEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVISHYPGGTGGKTGTRRLQGGSLPSEAANRHRPGAQEVLIDPGALTTNGINPDTSAEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSISEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQTMSTKSPFIYSPIIAHSRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGVKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEITTNVSVQLYNGETQQLVITLENIGLEPLEQLEVTSKLLTTKEKLSGDFLSWKLEETLSQFPLQPGKVATFTVNIKAKLDFSCQENLLQDLSDDGVSVSGFPLSSPFRQVVRTRVESRPTNASEGSKSGDLGHLKTLEAVLNFKYSGGPGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTICARNNSELVLHASECQRMAIQVDKFSFESVPESPGEKGHLTNLKQLEEERQEARGLEISSKLDICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDCEVAAACQVGDPVHLEVRLTNRSPYSVGPFALTVVPFQDHKNGVHNYDLHDVISFVGSSTFYLDTVQPSGQSTCLGALLFLYTGDFFLHIRFHEDCKSKELPPSWFCLPSVHVRALEAQA", "length": 1148, "header": "tr|A0A9J7FGG9-1|A0A9J7FGG9_CRIGR Isoform 1 of Trafficking protein particle complex subunit 9 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc9 PE=3 SV=1 CANONICAL=A0A9J7FGG9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FGG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9/entry#A0A9J7FGG9-1", "sequence": { "sequence": "MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVTEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVISHYPGGTGGKTGTRRLQGGSLPSEAANRHRPGAQEVLIDPGALTTNGINPDTSAEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSISEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQTMSTKSPFIYSPIIAHSRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGVKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEITTNVSVQLYNGETQQLVITLENIGLEPLEQLEVTSKLLTTKEKLSGDFLSWKLEETLSQFPLQPGKVATFTVNIKAKLDFSCQENLLQDLSDDGVSVSGFPLSSPFRQVVRTRVESRPTNASEGSKSGDLGHLKTLEAVLNFKYSGGPGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTICARNNSELVLHASECQRMAIQVDKFSFESVPESPGEKGHLTNLKQLEEERQEARGLEISSKLDICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDCEVAAACQVGDPVHLEVRLTNRSPYSVGPFALTVVPFQDHKNGVHNYDLHDVISFVGSSTFYLDTVQPSGQSTCLGALLFLYTGDFFLHIRFHEDCKSKELPPSWFCLPSVHVRALEAQA", "length": 1148, "header": "tr|A0A9J7FGG9-1|A0A9J7FGG9_CRIGR Isoform 1 of Trafficking protein particle complex subunit 9 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc9 PE=3 SV=1 CANONICAL=A0A9J7FGG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9/entry#A0A9J7FHP3-1", "sequence": { "sequence": "MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVTEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVISHYPGGTGGKTGTRRLQGGSLPSEAANRHRPGAQEVLIDPGALTTNGINPDTSAEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSISEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQTMSTKSPFIYSPIIAHSRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGVKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEITTNVSVQLYNGETQQLVITLENIGLEPLEQLEVTSKLLTTKEKLSGDFLSWKLEETLSQFPLQPGKVATFTVNIKAKLDFSCQENLLQDLSDDGVSVSGFPLSSPFRQVVRTRVESRPTNASEGSKSGDLGHLKTLEAVLNFKYSGGPGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATRMAIQVDKFSFESVPESPGEKGHLTNLKQLEEERQEARGLEISSKLDICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDCEVAAACQVGDPVHLEVRLTNRSPYSVGPFALTVVPFQDHKNGVHNYDLHDVISFVGSSTFYLDTVQPSGQSTCLGALLFLYTGDFFLHIRFHEDCKSKELPPSWFCLPSVHVRALEAQA", "length": 1111, "header": "tr|A0A9J7FHP3-1|A0A9J7FHP3_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 9 isoform X5 OS=Cricetulus griseus OX=10029 GN=Trappc9 PE=3 SV=1 CANONICAL=A0A9J7FGG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JB34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9/entry#A0A9J7JB34-1", "sequence": { "sequence": "MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVTEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVISHYPGGTGGKTGTRRLQGGSLPSEAANRHRPGAQEVLIDPGALTTNGINPDTSAEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSISEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQTMSTKSPFIYSPIIAHSRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGVKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEITTNVSVQLYNGETQQLVITLENIGLEPLEQLEVTSKLLTTKEKLSGDFLSWKLEETLSQFPLQPGKVATFTVNIKAKLDFSCQENLLQDLSDDGVSVSGFPLSSPFRQVVRTRVESRPTNASEGSKSGDLGHLKDCSLNWKLLVQLGGLAEKLSESACLHPQCQEFKLRPSCLHSKSFYPLSCFSCPGRVS", "length": 909, "header": "tr|A0A9J7JB34-1|A0A9J7JB34_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 9 isoform X6 OS=Cricetulus griseus OX=10029 GN=Trappc9 PE=3 SV=1 CANONICAL=A0A9J7FGG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JET6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9/entry#A0A9J7JET6-1", "sequence": { "sequence": "MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVTEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVISHYPGGTGGKTGTRRLQGGSLPSEAANRHRPGALTTNGINPDTSAEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSISEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQTMSTKSPFIYSPIIAHSRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGVKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEITTNVSVQLYNGETQQLVITLENIGLEPLEQLEVTSKLLTTKEKLSGDFLSWKLEETLSQFPLQPGKVATFTVNIKAKLDFSCQENLLQDLSDDGVSVSGFPLSSPFRQVVRTRVESRPTNASEGSKSGDLGHLKTLEAVLNFKYSGGPGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTICARNNSELVLHASECQRMAIQVDKFSFESVPESPGEKGHLTNLKQLEEERQEARGLEISSKLDICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDCEVAAACQVGDPVHLEVRLTNRSPYSVGPFALTVVPFQDHKNGVHNYDLHDVISFVGSSTFYLDTVQPSGQSTCLGALLFLYTGDFFLHIRFHEDCKSKELPPSWFCLPSVHVRALEAQA", "length": 1139, "header": "tr|A0A9J7JET6-1|A0A9J7JET6_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 9 isoform X4 OS=Cricetulus griseus OX=10029 GN=Trappc9 PE=3 SV=1 CANONICAL=A0A9J7FGG9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770948", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770948", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 838, "end_pos": 840, "annotation": "n_glycosylation_sequon" }, { "start_pos": 875, "end_pos": 877, "annotation": "n_glycosylation_sequon" }, { "start_pos": 912, "end_pos": 914, "annotation": "n_glycosylation_sequon" }, { "start_pos": 924, "end_pos": 926, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG9" }, { "id": "PF08626", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08626" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Trs120/TRAPPC9 N-terminal", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 258, 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"length": 1268, "header": "tr|A0A9J7FGN8-1|A0A9J7FGN8_CRIGR Isoform 1 of Meiosis inhibitor protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mei1 PE=4 SV=1 CANONICAL=A0A9J7FGN8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1082, "start_aa": "Thr", "end_pos": 1082, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1082", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGN8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763620", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "meiosis I", "id": "GO:0007127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases frameshifts :: corrected 4 indels internal stop codons :: corrected 6 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027256322.1. 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257245", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257245" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH10" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gzmk", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH10", "locus": {} } ], "crossref": [ { "id": "A0A9J7FH10", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FH10", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774132", "url": "https://www.ncbi.nlm.nih.gov/gene/100774132", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774132", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774132", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FH10", "url": "https://www.orthodb.org/?gene=A0A9J7FH10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257245", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257245", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FH10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLSSFALFFLTAGLYLSSKCFCTEIIGGSEVQPHSRPFMASIQYHGNHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSNNEPAKQTIKITRFIPFSRSPSGFTSHDIMLIKLHTAAELNKHVQLLQVRSKNYVRDGTKCQVTGWGATNPDLLKPSDTLQEVTVSIIGRKHCNSQKYYNRNPVITRDMICAGDAKGRKDSCQGDSGGPLICKGVFHAIVSGGYKCSIANKPGIYTLLTKKYQSWIKSKLAPSSAN", "length": 263, "header": "tr|A0A9J7FH10-1|A0A9J7FH10_CRIGR Isoform 1 of Granzyme K OS=Cricetulus griseus OX=10029 GN=Gzmk PE=3 SV=1 CANONICAL=A0A9J7FH10-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FH10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH10/entry#A0A9J7FH10-1", "sequence": { "sequence": "MRLSSFALFFLTAGLYLSSKCFCTEIIGGSEVQPHSRPFMASIQYHGNHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSNNEPAKQTIKITRFIPFSRSPSGFTSHDIMLIKLHTAAELNKHVQLLQVRSKNYVRDGTKCQVTGWGATNPDLLKPSDTLQEVTVSIIGRKHCNSQKYYNRNPVITRDMICAGDAKGRKDSCQGDSGGPLICKGVFHAIVSGGYKCSIANKPGIYTLLTKKYQSWIKSKLAPSSAN", "length": 263, "header": "tr|A0A9J7FH10-1|A0A9J7FH10_CRIGR Isoform 1 of Granzyme K OS=Cricetulus griseus OX=10029 GN=Gzmk PE=3 SV=1 CANONICAL=A0A9J7FH10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508863" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH51" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Btf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH51", "locus": {} } ], "crossref": [ { "id": "A0A9J7FH51", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FH51", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756079", "url": "https://www.ncbi.nlm.nih.gov/gene/100756079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756079", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756079", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FH51", "url": "https://www.orthodb.org/?gene=A0A9J7FH51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10351", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10351", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508863", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FH51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN", "length": 162, "header": "tr|A0A9J7FH51-1|A0A9J7FH51_CRIGR Isoform 1 of Transcription factor BTF3 OS=Cricetulus griseus OX=10029 GN=Btf3 PE=3 SV=1 CANONICAL=A0A9J7FH51-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FH51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH51/entry#A0A9J7FH51-1", "sequence": { "sequence": "MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN", "length": 162, "header": "tr|A0A9J7FH51-1|A0A9J7FH51_CRIGR Isoform 1 of Transcription factor BTF3 OS=Cricetulus griseus OX=10029 GN=Btf3 PE=3 SV=1 CANONICAL=A0A9J7FH51-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257316", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257316" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zswim6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH65", "locus": {} } ], "crossref": [ { "id": "100757838", "url": "https://www.ncbi.nlm.nih.gov/gene/100757838", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] 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"length": 1209, "header": "tr|A0A9J7FH65-1|A0A9J7FH65_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim6 PE=4 SV=1 CANONICAL=A0A9J7FH65-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 344, "start_aa": "Thr", "end_pos": 344, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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] }, { "uniprot_canonical_ac": "A0A9J7FHA7-1", "uniprot_ac": "A0A9J7FHA7", "uniprot_id": "A0A9J7FHA7_CRIGR", "mass": { "chemical_mass": 38280.0, "monoisotopic_mass": 38280.0 }, "refseq": { "ac": "XP_003503820", "name": "uncharacterized protein C6orf163 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503820" }, "gene_names": [ { "name": "CUNH6orf163", "type": "recommended", "evidence": [ { "id": "A0A9J7FHA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7" } ] }, { "name": "CUNH6orf163", "type": "synonym", "evidence": [ { "id": "XP_003503820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503820" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C6orf163 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7FHA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C6orf163 homolog", "type": "synonym", "evidence": [ { "id": "XP_003503820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503820" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614000.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503820" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH6orf163", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHA7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768147", "url": "https://www.ncbi.nlm.nih.gov/gene/100768147", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768147", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768147", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYTNFVC", "url": "https://omabrowser.org/oma/group/NYTNFVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FHA7", "url": "https://www.orthodb.org/?gene=A0A9J7FHA7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34645", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34645", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34645:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34645:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003503820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503820", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRNPDYKNFVCCSVCNKIIPPAPFGETFKRIYEYKPFKTRFYTHKDILDIGASILNQEEHFQEATLRETIANAEANVWKQANKLQQQAVDKALADANDRHEFEVQVLEEQHQRDLKAVEKKTKMEMFQNMEEELKRENSAAEQRMVHRIQRIMMECHREKMEAVKKAREEERELAQKAVEEETRKVMEELVSSGLTALRDHKTNLGELIKAKEKEMNAYYGLAQRQKQEEVQEVLQEAEKAHQANLDNVKFKLVNTQGELVSVAKQLGIMTNWKDFLEEELQETREAFQKYINYTFPRLSPGHADFILPERKKTPSKLLSDSETSA", "length": 327, "header": "tr|A0A9J7FHA7-1|A0A9J7FHA7_CRIGR Isoform 1 of Uncharacterized protein C6orf163 homolog OS=Cricetulus griseus OX=10029 GN=CUNH6orf163 PE=4 SV=1 CANONICAL=A0A9J7FHA7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7/entry#A0A9J7FHA7-1", "sequence": { "sequence": "MIRNPDYKNFVCCSVCNKIIPPAPFGETFKRIYEYKPFKTRFYTHKDILDIGASILNQEEHFQEATLRETIANAEANVWKQANKLQQQAVDKALADANDRHEFEVQVLEEQHQRDLKAVEKKTKMEMFQNMEEELKRENSAAEQRMVHRIQRIMMECHREKMEAVKKAREEERELAQKAVEEETRKVMEELVSSGLTALRDHKTNLGELIKAKEKEMNAYYGLAQRQKQEEVQEVLQEAEKAHQANLDNVKFKLVNTQGELVSVAKQLGIMTNWKDFLEEELQETREAFQKYINYTFPRLSPGHADFILPERKKTPSKLLSDSETSA", "length": 327, "header": "tr|A0A9J7FHA7-1|A0A9J7FHA7_CRIGR Isoform 1 of Uncharacterized protein C6orf163 homolog OS=Cricetulus griseus OX=10029 GN=CUNH6orf163 PE=4 SV=1 CANONICAL=A0A9J7FHA7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768147", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768147", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XAF1-1", "protein_name": "C6orf163 homolog", "gene_name": "C6orf163", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"MIRNPDFTNFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILEIGDSILNQEEQFQEAALKETIKKAEAKVWEKAETLQRQAVDQALEDADARHKFEIRVLEEQHQKDLKALEAKTKVEMIQQMDDELKREHTAAEQRMVHRIQRIMMECHREKMEAVQKAREEEREIAQKVIEDQRSIVLEELVTTGVTAIKDQKASLGQLIKAKEHEMNVYYGIAQRQKQEEVQEVLQEKEKTHQATLDNVMGKLVNTQGELLSVAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLTPGHADFILPERKKTPSRLAKETDKSTD", "length": 328 }, "evidence": [ { "id": "A0A9J7FHA7", "url": "https://omabrowser.org/oma/group/A0A9J7FHA7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1S0G4-1", "protein_name": "Chromosome 6 open reading frame 163", "gene_name": "C1H6orf163", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MIGNPNYTSFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILDIGTDILNKEEQFQEAVLKERIAKAEADIWAKADERQRQAVKKALDEANDMHKMKIQILKEHHQKDLQDMAAKTKIELHQNMEDELQRERLAAEQRMVHRIQRVMMECHREKVQAVEEARAEERRKAQEAIQAQRREAMEELLSAGVTVMKDQKKTVSQMIKEKEHEINIYYSMAQRQKQEEVQEVLQEAEKTHQAKLGNVMDKLVNTQGELLTIAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLSPGQADFILPERKKTPSNLIIQENETTLN", "length": 329 }, "evidence": [ { "id": "A0A9J7FHA7", "url": "https://omabrowser.org/oma/group/A0A9J7FHA7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q2TBK0-1", "protein_name": "Uncharacterized protein C6orf163 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIRNPNYTNFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILDIGKDILNKEEQFQEDALKERIAQAEADIWAKADERQRQAVKKALEEANDMYKMQIQFLKEEHEKELKEMATRTKMQLHKNLEEELQREHLAAEQRMVHRIQRIMMECHREKVQAVQEAREQERLMAQEEIQSQRRKAMEELMSSGVTVVKDQKKNVNQLIKEKQHEMNLYYCMTQRQKQEEVQEVLQEAEKTHQAKLGSVMDKLVNTQGELLSIAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLSPGHADFILPERKKTPSNLIIPENQTTPD", "length": 329 }, "evidence": [ { "id": "A0A9J7FHA7", "url": "https://omabrowser.org/oma/group/A0A9J7FHA7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3V037-1", "protein_name": "Uncharacterized protein C6orf163 homolog", "gene_name": "Gm136", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIRNPNYTDFVCCAVCNKIIPPAPFGETFKRIYDYKPFKTRFYTHKDILDIGASILNKEEEFRETVFKEQIKKAEAKVWEKAELLQKQAVDQAVEDAEARHKFEIRVLEEQHQKDLKALEDKTKVNMIQQMKEELNREHTAAEQRMVHRIQRIMMECHQEKMEAVKKAREEERRIAQKAIEEEKSKVLEEFVTTGVTVIKDKKTSLGQLIKAKEHEMTIYYGMAQRQKQEEVQEVLQEAEKTHQATLDNMMGKLVNTQGELLSVAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPRLSPGHADFILPERKKTPSILAKENEPRTD", "length": 328 }, "evidence": [ { "id": "A0A9J7FHA7", "url": "https://omabrowser.org/oma/group/A0A9J7FHA7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TEZ5-1", "protein_name": "Uncharacterized protein C6orf163", "gene_name": "C6orf163", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FHB7-1", "uniprot_ac": "A0A9J7FHB7", "uniprot_id": "A0A9J7FHB7_CRIGR", "mass": { "chemical_mass": 24643.0, "monoisotopic_mass": 24643.0 }, "refseq": { "ac": "XP_007641024", "name": "proteasome subunit alpha-type 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641024" }, "gene_names": [ { "name": "Psma8", "type": "recommended", "evidence": [ { "id": "A0A9J7FHB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ] }, { "name": "Psma8", "type": "synonym", "evidence": [ { "id": "XP_007641024", "database": "RefSeq", "url": 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computational analysis. This record is derived from a genomic sequence (NW_003613883.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641024" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Psma8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7", "locus": {} } ], "crossref": [ { "id": "cd03755", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03755", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769387", "url": "https://www.ncbi.nlm.nih.gov/gene/100769387", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769387", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769387", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHB7", "url": "https://www.orthodb.org/?gene=A0A9J7FHB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JF68", "url": "https://www.orthodb.org/?gene=A0A9J7JF68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641024", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALQVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDNEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELQVTEIEKEKEEVEKKKSKKPN", "length": 220, "header": "tr|A0A9J7FHB7-1|A0A9J7FHB7_CRIGR Isoform 1 of Proteasome subunit alpha-type 8 isoform X1 OS=Cricetulus griseus OX=10029 GN=Psma8 PE=3 SV=1 CANONICAL=A0A9J7FHB7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7/entry#A0A9J7FHB7-1", "sequence": { "sequence": "MALQVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDNEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELQVTEIEKEKEEVEKKKSKKPN", "length": 220, "header": "tr|A0A9J7FHB7-1|A0A9J7FHB7_CRIGR Isoform 1 of Proteasome subunit alpha-type 8 isoform X1 OS=Cricetulus griseus OX=10029 GN=Psma8 PE=3 SV=1 CANONICAL=A0A9J7FHB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7/entry#A0A9J7JF68-1", "sequence": { "sequence": "MAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDNEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELQVTEIEKEKEEVEKKKSKKPN", "length": 178, "header": "tr|A0A9J7JF68-1|A0A9J7JF68_CRIGR Computationally mapped isoform of Proteasome subunit alpha-type 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Psma8 PE=3 SV=1 CANONICAL=A0A9J7FHB7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769387", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769387", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "pmid": "" }, { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FHC1-1", "uniprot_ac": "A0A9J7FHC1", "uniprot_id": "A0A9J7FHC1_CRIGR", "mass": { "chemical_mass": 134320.0, "monoisotopic_mass": 134320.0 }, "refseq": { "ac": "XP_027259083", "name": "uncharacterized protein C9orf131 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259083" }, "gene_names": [ { "name": "CUNH9orf131", "type": "recommended", "evidence": [ { "id": "A0A9J7FHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1" } ] }, { "name": "CUNH9orf131", "type": "synonym", "evidence": [ { "id": "XP_027259083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259083" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C9orf131 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C9orf131 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027259083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259083" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259083", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259083" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH9orf131", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769690", "url": "https://www.ncbi.nlm.nih.gov/gene/100769690", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769690", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHC1", "url": "https://www.orthodb.org/?gene=A0A9J7FHC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21777", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21777", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21777:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21777:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027259083", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259083", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEWLLEDLLRAKGDMGPLQGQLTHVLACRHCSSSICLQSPGNLVILFLFMVWQIQRWWQLGKWQQLQPWCSGDITIQGKGLQLLHHFAFLDSLCKQESKKEEECGEEKEEESLSLSPLKPHSPSKDAFIGKQFTADPHQPSCSSEGLPKATGIREQVLTQPSSPSRSFPTFQILTNLPVRNKIASGSSLQQRKSQLFWGLPSLHSESLETIFLSSDGPSPLKLSICPSVFFNKVSVLPVYNLLLPYYRSPTYYPTHEAHTMRNLERMVPGSQLVQSPPPPLIPLVPSNLKPLLIDCKGILSDTDAHTQQKEVPCASENQALYPQPELQNIRPSTFLYSPEAWRETPGDPSLHQHNPESPSASLLYPSNPHEIITRLEAPRITMKQHKHPKTSQSAMSTTSPHPTSLTEYQRANPMRDLSGLKALWETTVQKKNSQIYALPISSPCQFIVPMTEHQETGPPVTPPGYEVQWGIIQHNDNPQAFDPPMPASCQPPGSLSEVKTVNPKGRLSTLKDFWGNIGYKEKPPVSKSPVSAPCPPLDTLSEHQIESPLEDLSGYQAQLQHRENSGNLWAFETPTLDFNMWFHETIPACVPLGSETPLKGRPSTENLCVCADLVSAPSLPSVSLPDFAMMGPQRVFSESQALWEKKGQRKKLWVSDSPCPAHVPSLVPFLEPQTINIVDDFPRSEATWKDTEHTRKCLSSESPFLNLNPSPDLVQPPLRVSSMENPFKSKVWCVDIQRKNNFLASEHPAQSLSQHLFRTRSSGVLSDPAGGYMKQNENCCVSVSSVWGSSPPPNSVSKSHISKPSGNPCNCKPMESGLEQRKDSWPTELPAPSFLSAPSQEPHPDIEFIYRNVQKREASQTPSPPVMNPLQPTSWPPMLAKALKSEHNQSGLQKEEMFSEAKAEAPSSHPSSQGGAVSELCDHPVSHAWQWSRELKARLKKLQQSPTFKSPGPHHSLGSSPALNSPIPESWGLSYSPHQTQALSLYPCSSIGDPPKIQRTEPQSVQAPHCSHSSSRAEQESQKKRMKWKVVGQTPSPGNVHTKANENCSGMGKPSNTGAPVSSKRRQDKILVLPSAQKKGSPRKPKAEKCGGGTARLGSSTDTGKNNPAQACTPTEVPIQRFSKKSQYRAQHSPHTILAQQLLPNAASPQDQQREGLVAGNTQNPHHCKHCAWAPKEKQLPSSTPQAPPTRGFQRLLAKFLRVRRCLPTKSSQ", "length": 1214, "header": "tr|A0A9J7FHC1-1|A0A9J7FHC1_CRIGR Isoform 1 of Uncharacterized protein C9orf131 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH9orf131 PE=4 SV=1 CANONICAL=A0A9J7FHC1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHC1/entry#A0A9J7FHC1-1", "sequence": { "sequence": "MEWLLEDLLRAKGDMGPLQGQLTHVLACRHCSSSICLQSPGNLVILFLFMVWQIQRWWQLGKWQQLQPWCSGDITIQGKGLQLLHHFAFLDSLCKQESKKEEECGEEKEEESLSLSPLKPHSPSKDAFIGKQFTADPHQPSCSSEGLPKATGIREQVLTQPSSPSRSFPTFQILTNLPVRNKIASGSSLQQRKSQLFWGLPSLHSESLETIFLSSDGPSPLKLSICPSVFFNKVSVLPVYNLLLPYYRSPTYYPTHEAHTMRNLERMVPGSQLVQSPPPPLIPLVPSNLKPLLIDCKGILSDTDAHTQQKEVPCASENQALYPQPELQNIRPSTFLYSPEAWRETPGDPSLHQHNPESPSASLLYPSNPHEIITRLEAPRITMKQHKHPKTSQSAMSTTSPHPTSLTEYQRANPMRDLSGLKALWETTVQKKNSQIYALPISSPCQFIVPMTEHQETGPPVTPPGYEVQWGIIQHNDNPQAFDPPMPASCQPPGSLSEVKTVNPKGRLSTLKDFWGNIGYKEKPPVSKSPVSAPCPPLDTLSEHQIESPLEDLSGYQAQLQHRENSGNLWAFETPTLDFNMWFHETIPACVPLGSETPLKGRPSTENLCVCADLVSAPSLPSVSLPDFAMMGPQRVFSESQALWEKKGQRKKLWVSDSPCPAHVPSLVPFLEPQTINIVDDFPRSEATWKDTEHTRKCLSSESPFLNLNPSPDLVQPPLRVSSMENPFKSKVWCVDIQRKNNFLASEHPAQSLSQHLFRTRSSGVLSDPAGGYMKQNENCCVSVSSVWGSSPPPNSVSKSHISKPSGNPCNCKPMESGLEQRKDSWPTELPAPSFLSAPSQEPHPDIEFIYRNVQKREASQTPSPPVMNPLQPTSWPPMLAKALKSEHNQSGLQKEEMFSEAKAEAPSSHPSSQGGAVSELCDHPVSHAWQWSRELKARLKKLQQSPTFKSPGPHHSLGSSPALNSPIPESWGLSYSPHQTQALSLYPCSSIGDPPKIQRTEPQSVQAPHCSHSSSRAEQESQKKRMKWKVVGQTPSPGNVHTKANENCSGMGKPSNTGAPVSSKRRQDKILVLPSAQKKGSPRKPKAEKCGGGTARLGSSTDTGKNNPAQACTPTEVPIQRFSKKSQYRAQHSPHTILAQQLLPNAASPQDQQREGLVAGNTQNPHHCKHCAWAPKEKQLPSSTPQAPPTRGFQRLLAKFLRVRRCLPTKSSQ", 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automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"https://www.uniprot.org/uniprotkb/A0A9J7FHG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNVLHWNPPEGLRGVEVTYTVQYFIYGQKQWLGASECRSISRTYCDLSAETSDYEHQYYAKVKAMQETKCSEWAETRRFYPFLETQVGPPEVALTPGEKSISIDLTAPKKWQRNPKDDTVSMQQIYSNLKYNVFVYNTKSRRMWSKCITNSTLELRWLEPSTLYCVHVESFVPGLPRLTLPSQKQCISTLEDEMSALKVKVIFWYVLPTSVIVFLFSVMGYSVYRYIHVGKEKHPSNLILIYGNEIKRFFEPTETITLNFITLNMMDDSKISQKDMSLLEQSSDSSCLNDPELSGSWHPHLEEVEGPCLGYSLPLMDTVSDAEQSNSNVCLSQHEWLIVPTGVSDNDPEYTVPADLYGEAEDHQLCGQEEASTTETLSEPQAALANLGPSLVGLYHLGERHPASEEGPEEEPSATLVDWDPQTGRLCIPSFPSFGQDPVDYGHYERDQLSEDGLLSRLYKNEAADKSEDENENYLVQFMQEWRLHVQIES", "length": 491, "header": "tr|A0A9J7FHG1-1|A0A9J7FHG1_CRIGR Isoform 1 of Interleukin-20 receptor subunit alpha OS=Cricetulus griseus OX=10029 GN=Il20ra PE=3 SV=1 CANONICAL=A0A9J7FHG1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHG1/entry#A0A9J7FHG1-1", "sequence": { "sequence": "MKNVLHWNPPEGLRGVEVTYTVQYFIYGQKQWLGASECRSISRTYCDLSAETSDYEHQYYAKVKAMQETKCSEWAETRRFYPFLETQVGPPEVALTPGEKSISIDLTAPKKWQRNPKDDTVSMQQIYSNLKYNVFVYNTKSRRMWSKCITNSTLELRWLEPSTLYCVHVESFVPGLPRLTLPSQKQCISTLEDEMSALKVKVIFWYVLPTSVIVFLFSVMGYSVYRYIHVGKEKHPSNLILIYGNEIKRFFEPTETITLNFITLNMMDDSKISQKDMSLLEQSSDSSCLNDPELSGSWHPHLEEVEGPCLGYSLPLMDTVSDAEQSNSNVCLSQHEWLIVPTGVSDNDPEYTVPADLYGEAEDHQLCGQEEASTTETLSEPQAALANLGPSLVGLYHLGERHPASEEGPEEEPSATLVDWDPQTGRLCIPSFPSFGQDPVDYGHYERDQLSEDGLLSRLYKNEAADKSEDENENYLVQFMQEWRLHVQIES", "length": 491, "header": "tr|A0A9J7FHG1-1|A0A9J7FHG1_CRIGR Isoform 1 of Interleukin-20 receptor subunit alpha OS=Cricetulus griseus OX=10029 GN=Il20ra PE=3 SV=1 CANONICAL=A0A9J7FHG1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0004896", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHG1" } ], "pmid": "" }, { "name": "interleukin-20 binding", "id": "GO:0042015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042015", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FHG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHG1" }, { "id": "PF01108", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01108" } ], "ann_type": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FHJ6-1", "uniprot_ac": "A0A9J7FHJ6", "uniprot_id": "A0A9J7FHJ6_CRIGR", "mass": { "chemical_mass": 93255.0, "monoisotopic_mass": 93255.0 }, "refseq": { "ac": "XP_003506685", "name": "P protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506685" }, "gene_names": [ { "name": "Oca2", "type": "recommended", "evidence": [ { "id": "A0A9J7FHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ] }, { "name": "Oca2", "type": "synonym", "evidence": [ { "id": "XP_003506685", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506685" } ] } ], "protein_names": [ { "name": "P protein", "type": "synonym", "evidence": [ { "id": "XP_003506685", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506685" }, { "id": "A0A9J7FHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614268.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506685", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506685" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Oca2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHJ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01116", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01116", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758485", "url": "https://www.ncbi.nlm.nih.gov/gene/100758485", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758485", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758485", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHJ6", "url": "https://www.orthodb.org/?gene=A0A9J7FHJ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43568", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43568", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43568:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43568:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506685", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506685", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLENKDSRLLSAVLEVELRQTSAASVPTSSDPGRLLTVRPTARSYQHSQADPHIPSAGQATGKSPCVPEHAELGSLLMKGRTHSALSQFSASSRDLCLKEDTPLLWNVSQKKRSQFMPVHHPEFITTEDSWENGLTAWEQRCMLGKEVADMSTLISSEKGDLAGSVHIRVQVSRLGCCVRWMKVTGLFVFVVVCSILFSLYPDQEKFWQLLAVSPLENYSVSLSGHVDSIMLQLELAGPLMAGGPSGTRKEEHIVVVVTQADPMGSRWRRPQQVTHNWTVLLSPRSEHVVVSRTFEIVSREAVSISIQASLQQTRLVPLLLAHQFLGASVEAQVTIAVAILTGVYTLVIFEIVHRTLAAMLGALAALAALAMVGDRPSLTHVVEWIDFETLALLFGMMILVAIFSETGFFDYCAVKAYQLSRGRVWTMIIMLCLIAAILSAFLDNVTTMLLFTPVTIRLCEVLNLDPRQVLIAEVIFTNIGGAATAIGDPPNVIIVSNQELRKMGMDFAGFTVHMFLGICLILLASFPLLRLLYWNKKLYNKEPSEIVELKHEIHVWRLTAQRISPASREETAVRGLLLEKVLALEHLLAQRLHSFHRQISQEDKNWETNIQELQRKHRISDKSLLVKCLMVLGFVISMFFLNSFVPGIHLDLGWIAILGAIWLLILADTHDFEIILHRVEWATLLFFAALFVLMEALAHLHLVEYVGEQTALLIKMVPEDQRLAAAIVLIVWVSALASSLIDNIPFTATMIPVLLNLSQDPDVSLPALPLMYALALGACLGGNGTLIGASANVVCAGIAEQHGYGFSFMEFFRLGFPMMLVSCTIGMCYLLIAHVVVGWN", "length": 842, "header": "tr|A0A9J7FHJ6-1|A0A9J7FHJ6_CRIGR Isoform 1 of P protein OS=Cricetulus griseus OX=10029 GN=Oca2 PE=4 SV=1 CANONICAL=A0A9J7FHJ6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6/entry#A0A9J7FHJ6-1", "sequence": { "sequence": "MHLENKDSRLLSAVLEVELRQTSAASVPTSSDPGRLLTVRPTARSYQHSQADPHIPSAGQATGKSPCVPEHAELGSLLMKGRTHSALSQFSASSRDLCLKEDTPLLWNVSQKKRSQFMPVHHPEFITTEDSWENGLTAWEQRCMLGKEVADMSTLISSEKGDLAGSVHIRVQVSRLGCCVRWMKVTGLFVFVVVCSILFSLYPDQEKFWQLLAVSPLENYSVSLSGHVDSIMLQLELAGPLMAGGPSGTRKEEHIVVVVTQADPMGSRWRRPQQVTHNWTVLLSPRSEHVVVSRTFEIVSREAVSISIQASLQQTRLVPLLLAHQFLGASVEAQVTIAVAILTGVYTLVIFEIVHRTLAAMLGALAALAALAMVGDRPSLTHVVEWIDFETLALLFGMMILVAIFSETGFFDYCAVKAYQLSRGRVWTMIIMLCLIAAILSAFLDNVTTMLLFTPVTIRLCEVLNLDPRQVLIAEVIFTNIGGAATAIGDPPNVIIVSNQELRKMGMDFAGFTVHMFLGICLILLASFPLLRLLYWNKKLYNKEPSEIVELKHEIHVWRLTAQRISPASREETAVRGLLLEKVLALEHLLAQRLHSFHRQISQEDKNWETNIQELQRKHRISDKSLLVKCLMVLGFVISMFFLNSFVPGIHLDLGWIAILGAIWLLILADTHDFEIILHRVEWATLLFFAALFVLMEALAHLHLVEYVGEQTALLIKMVPEDQRLAAAIVLIVWVSALASSLIDNIPFTATMIPVLLNLSQDPDVSLPALPLMYALALGACLGGNGTLIGASANVVCAGIAEQHGYGFSFMEFFRLGFPMMLVSCTIGMCYLLIAHVVVGWN", "length": 842, "header": "tr|A0A9J7FHJ6-1|A0A9J7FHJ6_CRIGR Isoform 1 of P protein OS=Cricetulus griseus OX=10029 GN=Oca2 PE=4 SV=1 CANONICAL=A0A9J7FHJ6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758485", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758485", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "pmid": "" }, { "name": "melanin biosynthetic process", "id": "GO:0042438", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042438", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "pmid": "" }, { "name": "melanocyte differentiation", "id": "GO:0030318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030318", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 758, "end_pos": 760, "annotation": "n_glycosylation_sequon" }, { "start_pos": 785, "end_pos": 787, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ6" }, { "id": "PF03600", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03600" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Citrate transporter-like", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 779, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 446, "end_pos": 448 }, { "start_pos": 758, "end_pos": 760 }, { "start_pos": 785, "end_pos": 787 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FKW7-1", "uniprot_ac": "A0A9J7FKW7", "uniprot_id": "A0A9J7FKW7_CRIGR", "mass": { "chemical_mass": 45199.0, "monoisotopic_mass": 45199.0 }, "refseq": { "ac": "XP_007650920", "name": "pleckstrin homology domain-containing family A member 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650920" }, "gene_names": [ { "name": "Plekha1", "type": "recommended", "evidence": [ { "id": "A0A9J7FKW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ] }, { "name": "Plekha1", "type": "synonym", "evidence": [ { "id": "XP_007650920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650920" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family A member 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FKW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family A member 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007650920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650920" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615400.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650920" } ] }, { "annotation": "Binds specifically to phosphatidylinositol 3,4-diphosphate (PtdIns3,4P2), but not to other phosphoinositides. May recruit other proteins to the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5W6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5W6#function" }, { "database": "UniProtKB", "id": "ARBA00059661", "url": "https://www.uniprot.org/uniprotkb/ARBA00059661#function" }, { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7#function" }, { "database": "UniProtKB", "id": "A0A9J7FKY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKY5#function" }, { "database": "UniProtKB", "id": "A0A9J7FLT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLT0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekha1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7", "locus": {} } ], "crossref": [ { "id": "cd13270", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13270", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762379", "url": "https://www.ncbi.nlm.nih.gov/gene/100762379", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051707", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051707", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762379", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762379", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DPKHAFR", "url": "https://omabrowser.org/oma/group/DPKHAFR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M5W6", "url": "https://www.orthodb.org/?gene=A0A8C2M5W6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKW7", "url": "https://www.orthodb.org/?gene=A0A9J7FKW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKY5", "url": "https://www.orthodb.org/?gene=A0A9J7FKY5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FLT0", "url": "https://www.orthodb.org/?gene=A0A9J7FLT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14336:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14336:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007650920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5W6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGEIVDRNNLKRSQSHLPYFPPKPPPDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSEHSGCPSESKYTVRPAGAAAATSHSAASRSHSLVSSYTMEKRGFYESLAKVKPGNFKVQTVSPREPASKVTEQALLRPQSKNGPQGKDGEPVDLDDASLPVSDV", "length": 404, "header": "tr|A0A9J7FKW7-1|A0A9J7FKW7_CRIGR Isoform 1 of Pleckstrin homology domain-containing family A member 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekha1 PE=4 SV=1 CANONICAL=A0A9J7FKW7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7/entry#A0A8C2M5W6-1", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGEIVDRNNLKRSQSHLPYFPPKPPPDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSMRQARRLSNPCIQRSIPAVLQNPNTLSVLPGQQQPPHIPQPLAATLWSQAIPWRSEDFTNLLPRSSQGTSRSRLSLQENQLPK", "length": 383, "header": "tr|A0A8C2M5W6-1|A0A9J7FKW7_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekha1 PE=4 SV=1 CANONICAL=A0A9J7FKW7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7/entry#A0A9J7FKW7-1", "sequence": { "sequence": 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"MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGEIVDRNNLKRSQSHLPYFPPKPPPDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSMRQARRLSNPCIQRYTSRAGECSTYVGSHANVPS", "length": 334, "header": "tr|A0A9J7FKY5-1|A0A9J7FKY5_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Plekha1 PE=4 SV=1 CANONICAL=A0A9J7FKW7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7/entry#A0A9J7FLT0-1", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGEIVDRNNLKRSQSHLPYFPPKPPPDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSMRQARRLSNPCIQRYTSRAGECSTSIPAVLQNPNTLSVLPGQQQPPHIPQPLAATLWSQAIPWRSEDFTNLLPRSSQGTSRSRLSLQENQLPK", "length": 393, "header": "tr|A0A9J7FLT0-1|A0A9J7FLT0_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Plekha1 PE=4 SV=1 CANONICAL=A0A9J7FKW7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GW26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7/entry#A0A9J7GW26-1", "sequence": { "sequence": "MKTVGNFFDGISSWIPEKTASYGTWIIHRTCLQDHHGLEPLNLPTFQSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGEIVDRNNLKRSQSHLPYFPPKPPPDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSEHSGCPSESKYTVRPAGAAAATSHSAASRSHSLVSSYTMEKRGFYESLAKVKPGNFKVQTVSPREPASKVTEQALLRPQSKNGPQGKDGEPVDLDDASLPVSDV", "length": 384, "header": "tr|A0A9J7GW26-1|A0A9J7GW26_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Plekha1 PE=4 SV=1 CANONICAL=A0A9J7FKW7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5W6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5W6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5W6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5W6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762379", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762379", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8BUL6-1", "protein_name": "Pleckstrin homology domain-containing family A member 1", "gene_name": "Plekha1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGESLDRNNLKRSQSHLPYFAPKPPSDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSMRQARRLSNPCIQRSIPAGLQNPNSLSVLPGPQPPPHIPQPLAATLWSQAVPWRSEEFTNLLPRSSQGTSRSRLSLQESQLPK", "length": 383 }, "evidence": [ { "id": "A0A9J7FKW7", "url": "https://omabrowser.org/oma/group/A0A9J7FKW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HB21-1", "protein_name": "Pleckstrin homology domain-containing family A member 1", "gene_name": "PLEKHA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRHGECGKKQVSYRTDIVGGVPIITPTQKEEVNECGESIDRNNLKRSQSHLPYFTPKPPQDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSEHPPGPSESKHAFRPTNAATATSHSTASRSNSLVSTFTMEKRGFYESLAKVKPGNFKVQTVSPREPASKVTEQALLRPQSKNGPQEKDCDLVDLDDASLPVSDV", "length": 404 }, "evidence": [ { "id": "A0A9J7FKW7", "url": "https://omabrowser.org/oma/group/A0A9J7FKW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "phosphatidylinositol-3,4-bisphosphate binding", "id": "GO:0043325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" }, { "name": "PDZ domain binding", "id": "GO:0030165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, 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"refseq": { "ac": "XP_027262075", "name": "transportin-2 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262075" }, "gene_names": [ { "name": "Tnpo2", "type": "recommended", "evidence": [ { "id": "A0A9J7FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6" } ] }, { "name": "Tnpo2", "type": "synonym", "evidence": [ { "id": "XP_027262075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262075" } ] } ], "protein_names": [ { "name": "Transportin-2 isoform X7", "type": "synonym", "evidence": [ { "id": "A0A9J7FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#names_and_taxonomy" } ] }, { "name": "transportin-2 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_027262075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262075" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262075" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tnpo2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FKS6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FKS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759607", "url": "https://www.ncbi.nlm.nih.gov/gene/100759607", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759607", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759607", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SNIMMEY", "url": "https://omabrowser.org/oma/group/SNIMMEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061I7S8", "url": "https://www.orthodb.org/?gene=A0A061I7S8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKS6", "url": "https://www.orthodb.org/?gene=A0A9J7FKS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HCW0", "url": "https://www.orthodb.org/?gene=G3HCW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10527", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10527", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25574", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25574", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262075", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I7S8", "url": "https://www.uniprot.org/uniprotkb/A0A061I7S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I7S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I7S8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK61", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK61-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5H9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCW0", "url": "https://www.uniprot.org/uniprotkb/G3HCW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCW0-1", "url": "https://www.uniprot.org/uniprotkb/G3HCW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGVSVCVIVGGCAGECAASRSHCALVQGG", "length": 913, "header": "tr|A0A9J7FKS6-1|A0A9J7FKS6_CRIGR Isoform 1 of Transportin-2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "isoforms": [ { "isoform_ac": "A0A061I7S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A061I7S8-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 897, "header": "tr|A0A061I7S8-1|A0A061I7S8_CRIGR Computationally mapped isoform of Transportin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FK61-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A9J7FK61-1", "sequence": { "sequence": "MWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIVFSFSALFIPLAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 786, "header": "tr|A0A9J7FK61-1|A0A9J7FK61_CRIGR Computationally mapped isoform of Transportin-2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A9J7FKS6-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGVSVCVIVGGCAGECAASRSHCALVQGG", "length": 913, "header": "tr|A0A9J7FKS6-1|A0A9J7FKS6_CRIGR Isoform 1 of Transportin-2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FN80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A9J7FN80-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIVFSFSALFIPLAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 898, "header": "tr|A0A9J7FN80-1|A0A9J7FN80_CRIGR Computationally mapped isoform of Transportin-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A9J7FPA3-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIVFSFSALFIPLAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 908, "header": "tr|A0A9J7FPA3-1|A0A9J7FPA3_CRIGR Computationally mapped isoform of Transportin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#A0A9J7K5H9-1", "sequence": { "sequence": "MPPLSSEPPLGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIVFSFSALFIPLAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 774, "header": "tr|A0A9J7K5H9-1|A0A9J7FKS6_CRIGR Computationally mapped isoform of Transportin-2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} }, { "isoform_ac": "G3HCW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKS6/entry#G3HCW0-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 887, "header": "tr|G3HCW0-1|A0A9J7FKS6_CRIGR Computationally mapped isoform of Transportin-2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tnpo2 PE=4 SV=1 CANONICAL=A0A9J7FKS6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCW0", "url": "https://www.uniprot.org/uniprotkb/G3HCW0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCW0", "url": "https://www.uniprot.org/uniprotkb/G3HCW0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759607", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759607", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZER6-1", "protein_name": "Transportin 2", "gene_name": "Tnpo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLTHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLSNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGVFVCVIVGGCAGECAASRSHCALVEGG", "length": 913 }, "evidence": [ { "id": "A0A9J7FKS6", "url": "https://omabrowser.org/oma/group/A0A9J7FKS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O14787-1", "protein_name": "Transportin-2", "gene_name": "TNPO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEDNWQQFSEQFPPLLKERLAAFYGV", "length": 897 }, "evidence": [ { "id": "A0A9J7FKS6", "url": "https://omabrowser.org/oma/group/A0A9J7FKS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99LG2-1", "protein_name": "Transportin-2", "gene_name": "Tnpo2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 724, "end_pos": 726 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FJQ4-1", "uniprot_ac": "A0A9J7FJQ4", "uniprot_id": "A0A9J7FJQ4_CRIGR", "mass": { "chemical_mass": 46645.0, "monoisotopic_mass": 46645.0 }, "refseq": { "ac": "XP_007640720", "name": "zinc finger protein 300 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640720" }, "gene_names": [ { "name": "LOC100754794", "type": "recommended", "evidence": [ { "id": "A0A9J7FJQ4", "database": 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613865.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640720" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754794", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754794", "url": "https://www.ncbi.nlm.nih.gov/gene/100754794", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754794", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754794", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJQ4", "url": "https://www.orthodb.org/?gene=A0A9J7FJQ4", "database": 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCV2", "url": "https://www.uniprot.org/uniprotkb/G3HCV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCV2-1", "url": "https://www.uniprot.org/uniprotkb/G3HCV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGKLEMGSVSFEDVAVDFTWREWQELDASQRTLYRDVMLETYSSLVFVGHCTTKPELIFKLEQGFGPWSKAEASVWNVRGVKKACVPIETIQENEERHCCEVKTTSSSISNEEVAEAQLKVQWKIQQGAKSNSCVETYCQRPQHKKRHTCGKHCEYRDCCGAVHDKSTLTEHQRTETKEKTYECKQCRKGFYHKSHLFRHQRTHTGEKPYGCEECPKAFYHKCHLIQHQRTHTGEKPYGCEECKKTFRRKWLLTLHQRTHTGEKPYGCKECKKAFFYKSHLTRHQRTHTGEKPYECDECKKAFWQKSNLTAHKRIHTGEKPYECKVCMNAFYNKSNLTLHQRTHTGEKPYQCKECLKAFYSKSKLSRHQATHAGHCFCQLQSAMGGNFLFSVVYHKAS", "length": 399, "header": "tr|A0A9J7FJQ4-1|A0A9J7FJQ4_CRIGR Isoform 1 of Zinc finger protein 300 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100754794 PE=3 SV=1 CANONICAL=A0A9J7FJQ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4/entry#A0A9J7FJQ4-1", "sequence": { "sequence": "MPGKLEMGSVSFEDVAVDFTWREWQELDASQRTLYRDVMLETYSSLVFVGHCTTKPELIFKLEQGFGPWSKAEASVWNVRGVKKACVPIETIQENEERHCCEVKTTSSSISNEEVAEAQLKVQWKIQQGAKSNSCVETYCQRPQHKKRHTCGKHCEYRDCCGAVHDKSTLTEHQRTETKEKTYECKQCRKGFYHKSHLFRHQRTHTGEKPYGCEECPKAFYHKCHLIQHQRTHTGEKPYGCEECKKTFRRKWLLTLHQRTHTGEKPYGCKECKKAFFYKSHLTRHQRTHTGEKPYECDECKKAFWQKSNLTAHKRIHTGEKPYECKVCMNAFYNKSNLTLHQRTHTGEKPYQCKECLKAFYSKSKLSRHQATHAGHCFCQLQSAMGGNFLFSVVYHKAS", "length": 399, "header": "tr|A0A9J7FJQ4-1|A0A9J7FJQ4_CRIGR Isoform 1 of Zinc finger protein 300 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100754794 PE=3 SV=1 CANONICAL=A0A9J7FJQ4-1" }, "locus": {} }, { "isoform_ac": "G3HCV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4/entry#G3HCV2-1", "sequence": { "sequence": "MPGKLEMGSVSFEDVAVDFTWREWQELDASQRTLYRDVMLETYSSLVFVGHCTTKPELIFKLEQGFGPWSKAEASVWNVRGVKKACVPIETIQENEERHCCEVKTTSSSISNEEVAEAQLKVQWKIQQGAKSNSCVETYCQRPQHKKRHTCGKHCEYRDCCGAVHDKSTLTEHQRTETKEKTYECKQCRKGFYHKSHLFRHQRTHTGEKPYGCEECPKAFYHKCHLIQHQRTHTGEKPYGCEECKKTFRRKWLLTLHQRTHTGEKPYGCKECKKAFFYKSHLTRHQRTHTGEKPYECDECKKAFWQKSNLTAHKRIHTGEKPYECKVCMNAFYNKSNLTLHQRTHTGEKPYQCKECLKAFYSKSKLSRHQATHAGKVTNSK", "length": 381, "header": "tr|G3HCV2-1|A0A9J7FJQ4_CRIGR Computationally mapped isoform of Zinc finger protein 300 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100754794 PE=3 SV=1 CANONICAL=A0A9J7FJQ4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCV2", "url": "https://www.uniprot.org/uniprotkb/G3HCV2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCV2", "url": "https://www.uniprot.org/uniprotkb/G3HCV2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754794", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754794", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FJQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 210, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FJQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ4" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 81, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 309, "end_pos": 311 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 337, "end_pos": 339 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"XP_027262030", "name": "nucleus accumbens-associated protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262030" }, "gene_names": [ { "name": "Nacc1", "type": "recommended", "evidence": [ { "id": "A0A9J7FP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ] }, { "name": "Nacc1", "type": "synonym", "evidence": [ { "id": "XP_027262030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262030" } ] } ], "protein_names": [ { "name": "Nucleus accumbens-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82/entry#names_and_taxonomy" } ] }, { "name": "nucleus accumbens-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027262030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262030" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262030" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nacc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82", "locus": {} } ], "crossref": [ { "id": "A0A9J7FP82", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FP82", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18290", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18290", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765336", "url": "https://www.ncbi.nlm.nih.gov/gene/100765336", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765336", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765336", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FP82", "url": "https://www.orthodb.org/?gene=A0A9J7FP82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HCY8", "url": "https://www.orthodb.org/?gene=G3HCY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10523", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10523", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCY8", "url": "https://www.uniprot.org/uniprotkb/G3HCY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HCY8-1", "url": "https://www.uniprot.org/uniprotkb/G3HCY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQVSLEFKEQYVGFVSRDLLIFSLPFRIWDPGAQTIGAAAMAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNSSRSAVVELPAAVQPQSFQQILTFCYTGRLSMNMGDQFLLIYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGLHPEEAPSSEPQSPVAQTLGWPACSTPLPLVSRVKTEQELDSVQCTPMAKRLWDSSQKEAGGSGSNGSRKMAKFSTPDLAINRMPQPVSMATATAAVAVVAVGGCMSGPSMSERTSPGTSSAYTSDSPGSYHNEEDEEEDAGEEGTDEQYRQICNMYTMYSMLNVGQTVEKVEALPEQVVLESRSRIRVRQDLASLPAELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWLPKTKPLHLVEGDSYSSFISDVSKIEPDMMSMEHSFETASHSFETVSHDGEAGPSAEVLQ", "length": 561, "header": "tr|A0A9J7FP82-1|A0A9J7FP82_CRIGR Isoform 1 of Nucleus accumbens-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nacc1 PE=4 SV=1 CANONICAL=A0A9J7FP82-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FP82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82/entry#A0A9J7FP82-1", "sequence": { "sequence": "MDQVSLEFKEQYVGFVSRDLLIFSLPFRIWDPGAQTIGAAAMAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNSSRSAVVELPAAVQPQSFQQILTFCYTGRLSMNMGDQFLLIYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGLHPEEAPSSEPQSPVAQTLGWPACSTPLPLVSRVKTEQELDSVQCTPMAKRLWDSSQKEAGGSGSNGSRKMAKFSTPDLAINRMPQPVSMATATAAVAVVAVGGCMSGPSMSERTSPGTSSAYTSDSPGSYHNEEDEEEDAGEEGTDEQYRQICNMYTMYSMLNVGQTVEKVEALPEQVVLESRSRIRVRQDLASLPAELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWLPKTKPLHLVEGDSYSSFISDVSKIEPDMMSMEHSFETASHSFETVSHDGEAGPSAEVLQ", "length": 561, "header": "tr|A0A9J7FP82-1|A0A9J7FP82_CRIGR Isoform 1 of Nucleus accumbens-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nacc1 PE=4 SV=1 CANONICAL=A0A9J7FP82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82/entry#A0A9J7JK13-1", "sequence": { "sequence": "MFAGGHARSGLRDMGVSDIRGASAAAMAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNSSRSAVVELPAAVQPQSFQQILTFCYTGRLSMNMGDQFLLIYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGLHPEEAPSSEPQSPVAQTLGWPACSTPLPLVSRVKTEQELDSVQCTPMAKRLWDSSQKEAGGSGSNGSRKMAKFSTPDLAINRMPQPVSMATATAAVAVVAVGGCMSGPSMSERTSPGTSSAYTSDSPGSYHNEEDEEEDAGEEGTDEQYRQICNMYTMYSMLNVGQTVEKVEALPEQVVLESRSRIRVRQDLASLPAELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWLPKTKPLHLVEGDSYSSFISDVSKIEPDMMSMEHSFETASHSFETVSHDGEAGPSAEVLQ", "length": 546, "header": "tr|A0A9J7JK13-1|A0A9J7JK13_CRIGR Computationally mapped isoform of Nucleus accumbens-associated protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nacc1 PE=4 SV=1 CANONICAL=A0A9J7FP82-1" }, "locus": {} }, { "isoform_ac": "G3HCY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82/entry#G3HCY8-1", "sequence": { "sequence": "MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNSSRSAVVELPAAVQPQSFQQILTFCYTGRLSMNMGDQFLLIYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGLHPEEAPSSEPQSPVAQTLGWPACSTPLPLVSRVKTEQELDSVQCTPMAKRLWDSSQKEAGGSGSNGSRKMAKFSTPDLAINRMPQPVSMATATAAVAVVAVGGCMSGPSMSERTSPGTSSAYTSDSPGSYHNEEDEEEDAGEEGTDEQYRQICNMYTMYSMLNVGQTVEKVEALPEQVVLESRSRIRVRQDLASLPAELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWLPKTKPLHLVEGDSYSSFISDVSKIEPDMMSMEHSFETASHSFETVSHDGEAGPSAEVLQ", "length": 520, "header": "tr|G3HCY8-1|A0A9J7FP82_CRIGR Computationally mapped isoform of Nucleus accumbens-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nacc1 PE=4 SV=1 CANONICAL=A0A9J7FP82-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCY8", "url": "https://www.uniprot.org/uniprotkb/G3HCY8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HCY8", "url": "https://www.uniprot.org/uniprotkb/G3HCY8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765336", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765336", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of cell population proliferation", "id": "GO:0042127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" }, { "id": "PS51457", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51457" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEN", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 497, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP82" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 135, "start_aa": "Cys", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 239, "end_pos": 241 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 116032.0 }, "refseq": { "ac": "XP_007651374", "name": "zinc finger CCCH domain-containing protein 18 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651374" }, "gene_names": [ { "name": "Zc3h18", "type": "recommended", "evidence": [ { "id": "A0A9J7FTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ] }, { "name": "Zc3h18", "type": "synonym", "evidence": [ { "id": "XP_007651374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651374" } ] } ], "protein_names": [ { "name": "Zinc finger CCCH domain-containing protein 18 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6/entry#names_and_taxonomy" } ] }, { "name": "zinc finger CCCH domain-containing protein 18 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007651374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651374" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613583.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007651374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651374" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zc3h18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6", "locus": {} } ], "crossref": [ { "id": "100767415", "url": "https://www.ncbi.nlm.nih.gov/gene/100767415", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767415", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767415", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PYRNYRR", "url": "https://omabrowser.org/oma/group/PYRNYRR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FTE6", "url": "https://www.orthodb.org/?gene=A0A9J7FTE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46582:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46582:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18044", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18044", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007651374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRU2", "url": "https://www.uniprot.org/uniprotkb/G3GRU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRU2-1", "url": "https://www.uniprot.org/uniprotkb/G3GRU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVAESPELDPRSPEDEEQPALSDDDILRETGSEQDLDGAGERASDLEDEENATRVQSQEETHSDEEDRASEPKSQDQDSEAHELSRGPAGSLCEEGDDVEEDQTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKVGAEDEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGILPVVLIMQLMITNPTNNHKLKSLFISGPNRHMNLLMPTAAVSCWCLHMLAELNLGHWTWGLWPAGNCTWGMNCRFIHPGVNDKGNYSLITKTEPFPPNGAPPLGPHPLMPANPWGAPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTILEPYADPYYDYDIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKETTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSVKKPAPPPAPPQTTKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSEDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSTQPPKSSKAPTGGKSSQQSAAPQQTAPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLTPDRGSRDRKSGGKMGSPKPERQRGQNAKAPAAQADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 1038, "header": "tr|A0A9J7FTE6-1|A0A9J7FTE6_CRIGR Isoform 1 of Zinc finger CCCH domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zc3h18 PE=4 SV=1 CANONICAL=A0A9J7FTE6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6/entry#A0A8C2MJJ5-1", "sequence": { "sequence": "MDVAESPELDPRSPEDEEQPALSDDDILRETGSEQDLDGAGERASDLEDEENATRVQSQEETHSDEEDRASEPKSQDQDSEAHELSRGPAGSLCEEGDDVEEDQTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKVGAEDEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKGNCTWGMNCRFIHPGVNDKGNYSLITKTEPFPPNGAPPLGPHPLMPANPWGAPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTILEPYADPYYDYDIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKETTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSVKKPAPPPAPPQTTKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSEDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSTQPPKSSKAPTGGKSSQQSAAPQQTAPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLTPDRGSRDRKSGGKMGSPKPERQRGQNAKAPAAQADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 948, "header": "tr|A0A8C2MJJ5-1|A0A9J7FTE6_CRIGR Computationally mapped isoform of Zinc finger CCCH domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zc3h18 PE=4 SV=1 CANONICAL=A0A9J7FTE6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6/entry#A0A9J7FQV3-1", "sequence": { "sequence": "MDVAESPELDPRSPEDEEQPALSDDDILRETGSEQDLDGAGERASDLEDEENATRVQSQEETHSDEEDRASEPKSQDQDSEAHELSRGPAGSLCEEGDDVEEDQTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKVGAEDEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKGILPVVLIMQLMITNPTNNHKLKSLFISGPNRHMNLLMPTAAVSCWCLHMLAELNLGHWTWGLWPAGNCTWGMNCRFIHPGVNDKGNYSLITKTEPFPPNGAPPLGPHPLMPANPWGAPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTILEPYADPYYDYDIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKETTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSVKKPAPPPAPPQTTKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSEDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSTQPPKSSKAPTGGKSSQQSAAPQQTAPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLTPDRGSRDRKSGGKMGSPKPERQRGQNAKAPAAQADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 1014, "header": "tr|A0A9J7FQV3-1|A0A9J7FQV3_CRIGR Computationally mapped isoform of Zinc finger CCCH domain-containing protein 18 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zc3h18 PE=4 SV=1 CANONICAL=A0A9J7FTE6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6/entry#A0A9J7FTE6-1", "sequence": { "sequence": "MDVAESPELDPRSPEDEEQPALSDDDILRETGSEQDLDGAGERASDLEDEENATRVQSQEETHSDEEDRASEPKSQDQDSEAHELSRGPAGSLCEEGDDVEEDQTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKVGAEDEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGILPVVLIMQLMITNPTNNHKLKSLFISGPNRHMNLLMPTAAVSCWCLHMLAELNLGHWTWGLWPAGNCTWGMNCRFIHPGVNDKGNYSLITKTEPFPPNGAPPLGPHPLMPANPWGAPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTILEPYADPYYDYDIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKETTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSVKKPAPPPAPPQTTKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSEDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSTQPPKSSKAPTGGKSSQQSAAPQQTAPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLTPDRGSRDRKSGGKMGSPKPERQRGQNAKAPAAQADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 1038, "header": "tr|A0A9J7FTE6-1|A0A9J7FTE6_CRIGR Isoform 1 of Zinc finger CCCH domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zc3h18 PE=4 SV=1 CANONICAL=A0A9J7FTE6-1" }, "locus": {} }, { "isoform_ac": "G3GRU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6/entry#G3GRU2-1", "sequence": { "sequence": "MDVAESPELDPRSPEDEEQPALSDDDILRETGSEQDLDGAGERASDLEDEENATRVQSQEETHSDEEDRASEPKSQDQDSEAHELSRGPAGSLCEEGDDVEEDQTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKVGAEDEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGNCTWGMNCRFIHPGVNDKGNYSLITKTEPFPPNGAPPLGPHPLMPANPWGAPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTILEPYADPYYDYDIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKETTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSVKKPAPPPAPPQTTKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSEDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSTQPPKSSKAPTGGKSSQQSAAPQQTAPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLTPDRGSRDRKSGGKMGSPKPERQRGQNAKAPAAQADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 972, "header": "tr|G3GRU2-1|A0A9J7FTE6_CRIGR Computationally mapped isoform of Zinc finger CCCH domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zc3h18 PE=4 SV=1 CANONICAL=A0A9J7FTE6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 697, "start_aa": "Thr", "end_pos": 697, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr697", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 834, "start_aa": "Thr", "end_pos": 834, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr834", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRU2", "url": "https://www.uniprot.org/uniprotkb/G3GRU2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRU2", "url": "https://www.uniprot.org/uniprotkb/G3GRU2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767415", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767415", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3MX37-1", "protein_name": "Zinc finger CCCH-type containing 18", "gene_name": "ZC3H18", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDVAESPDRDPRSPEDEEEEQQGLSDDDILRESGSEQDLDAAGGRASDLEDEESVAPGLSQEDEESRSDEDDRDSEAQELSRGPASPPRAEGDCASDLRDEASSVTRDLDEHELDYDEEVPEEPAPGAQEDDAEKAGPEDDEERGEGAPGEEGKVGVRTVEDKEPPEAAKEKRKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKDVVTPLSTPPPISNSIPFRGQVKGNCTWGMNCRFIHPGVNDKGNYSLITKAEPFPPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDEREFDKENEVFRDWNYRITRDVRDTALEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDKEREKDKEKPKARSPQPPSRQAEPPKKETVSTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPARAKGEPAPPPTKAGEKLLKKPAPPPALPQAPKTTTAPEPTKPGGDPREARRRERQARSPPRRRTVSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSDDMYADLASPVSSASSRSPTPAQTKKEKGKSKKEDGVKVDKRKRDSSTQPPKPSRTPAGGRSSQQPTTPQQAPPGQPPAATFIAHKEIKLTLLNKATDKGSRKRYEPSDKDRQSPPPAKRANLSPDRGSRDRKSGGRVSSPKPERQRGQNSKAPSAPTDRKRPLSPQSKSSSKVTSVPGKASDTSTTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 960 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q0P678-1", "protein_name": "Zinc finger CCCH domain-containing protein 18", "gene_name": "Zc3h18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDVAESPELDPHSPEDEEQPALSDDDILRESGSEQDLDGAGERASDLEEEENATRVQSQEETRSDEEDRASEPKSQDQDSEAHELSRGPAGSPCEEGDDVEEDGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKAGAEEEEEKGEGAPGEEGKPDVQSVGEQEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKGNCTWGMSCRFIHPGVNDKGNYSLITKAEPFPPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKESTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPGPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRRRDPSAQPPKSSKAPAGGKASQQAAAPQPAVPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQSKGSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 948 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q1LUE5-1", "protein_name": "Zinc finger CCCH domain-containing protein 18", "gene_name": "zc3h18", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDTPESPTQSPQSPEEEEKGLSDNELLESPESPAEADKGVSDSELLNDDENEVPEHGGDSDSEDRDRQPAGREDPEELSDVEDYKLDREEREDIHQQEGALRVQEIAQKAIKSPEEEILETPRSPDPVSPAAEHERPFTPAEEERGDDDEEEEEDETTTKSGLGQAELEEEEDEEEERRRRRRAAMVVSDLKDESSVSRDLDEHELDYDEEVPEEPSAAAPEEDEPEKPAVGEDGEDEEEEDEEEEKRRKRKERKPILPPDNRDTPLRKSEDSREGGRRDSFRDKKKEEDDGEIDEGEIDDDDLEEGEVKDPMDRKIRPRPICRFFMKGSFVTMYGNVKFFFFKSYLVFLTGNCTWGMICRFIHPGVNDKGNYSLISKPDPFSPNGAPPGGAAGGGPHPLMPANPWGAPAVEELPPPPPPLDPPVESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDRDFDKENDFFRERGGYRITREIRDAGSDPYGDPYYDYEMEAFWRGGQYENFRVQYTETPLPYYPDRERERDPRERHRERERERERDHRERERRQREREREREREREKDSRRRKDEWDRDRLKRDEKEGRPRERPLREPREKKDEKEKTLKPRSPTNMPPRGPMEPPTKKDMLSVTKRPDEWNDPWCRSKSPRRRPGFMGSPPRGRRRHRPSGSSVSLSNSSRSSSRSSSFTGSGSSRSRSRSRSSSMSSYSSHSSQHSSFSGSRSRSGSFSSSPSPSPSAQRNANKNKAEQPPAAAKGPPLKPGALPPPRRDKGPPKVMPSPSLPEQPGKPPKPITETVKPPNPRPPGRPPGPREPREPPNMREGRKKERQQHNPPRRRTVSGSVSGSSYSGSSSRSRSRSSSASASRSGSHKSRSLSVSSVSSVSSASSSSSSVRSADSDDMYADLASPVSSASSRSPTPGHPRKDRGPPRERGPNKERGKPPKKDEPFKDERKRVDPSGLPSKASSDMPRSGNRGHPMHPPPMGPPGGYGSHKDIKLTLLNKQQTDRSNRKRYFPSDKERPPSPLRKRMAMSPDGGRDRRMPGRPPMSPRMERPKGQGPRPMPSQGERKRPLSPPAKSSGKGPAAASAAKPPAPGAGSGSASGSAPGKPSSTLSRREELLKQLKAVEDAIARKRAKIPGK", "length": 1148 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6TQE1-1", "protein_name": "Zinc finger CCCH domain-containing protein 18", "gene_name": "Zc3h18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAESPELEPHSPDEEQPALSDDDILRESGSEQDLDGAGERASDLEEEENATRVQSQEEIHSDEEDQASEPKSQDQDSEAHELSRGPAGSPCEEGDDAEEDGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKAGAEEEEEKGEGAPGEEGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKGNCTWGMNCRFIHPGVNDKGNYSLITKAEPFPPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHNYRDRERERERENRQRERERDRERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDRDKDKEKPKPRSPQPPSRQAEPPKKETASVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRRSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPAPEPAKPGDLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSAQPPKSSKAPAGGKASQQAAAPQQAAPGQPQQGSFVAHKEIKLTLLNKAAEKGSRKRYEPSDKDRQSPPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQSKSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV", "length": 947 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86VM9-1", "protein_name": "Zinc finger CCCH domain-containing protein 18", "gene_name": "ZC3H18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVAESPERDPHSPEDEEQPQGLSDDDILRDSGSDQDLDGAGVRASDLEDEESAARGPSQEEEDNHSDEEDRASEPKSQDQDSEVNELSRGPTSSPCEEEGDEGEEDRTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGTPREEGKAGVQSVGEKESLEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPTCRFFMKGNCTWGMNCRFIHPGVNDKGNYSLITKADPFPPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDEREFDKENEVFRDWNSRIPRDVRDTVLEPYADPYYDYEIERFWRGGQYENFRVQYTETEPYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRSPAPAQTRKEKGKSKKEDGVKEEKRKRDSSTQPPKSAKPPAGGKSSQQPSTPQQAPPGQPQQGTFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPPAKRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSKVTSVPGKASDPGAASTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKA", "length": 953 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W3R9-1", "protein_name": "C3H1-type domain-containing protein", "gene_name": "Dmel\\CG1677", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVLDMESDDSHASSASNSSESRSNSPTNDKDEVVADHGGESPGGGGDPILDRSDRAPSTSSSSSNSSSSSNRSDLSKKQKKSSSSSSGSGSGSGSSSSSGSSSEDEGDQEPEQEVQRLSEQQREQQQHSPINERESESAAGTPVNADQPGSPNAKSQPSSFLSSVRSRSVSPQLYNQAAVDLNISHDDLSDVSDIEGEEKRTSSKNSMRPADENEDGAISNDSLPTLGEEDEVEQKQSTPNGKASSGDEKEPFAKETHTDDASNGLAPATALQEDLVKTHDDDALDFEAEEGECPEQAKEPSPMESTANETNQTKSTTKVSQDEGDDDGEVDKDGDDKDGDDKDTRKDGAGNGCLEDGAGNDSRKDDAGNGCLEEGEEEKDIVSVSTSSSQEKVEEGELEEGEVSDEDEKRPEETEPKPVCRFYTRGQCTWGMSCRFLHPGVTDKGNYTMFDNVIRPVPMQGGSTGASAPAAPSSTAAPRAGGSAYSSHASATADYHDYRTERPLHHRPPLLHAPSIYGAPVHDARTLLPDGAPVVVENAWERGLRTAKEMMRKANKRKEQDMDFEDKKMNLTLSPDEMEKDSYYLKDRGGSSARSPPPPSANVREQPLNPLSMPLSMHPHAVAHANPRALLPLQYSVYGPPPDRYGRPQYMPPQYDDVDAYGRMTRYRELPPHRMPHYEDDRRSRPTREVIVQRVEAAGRGDEWSDPWMRSKSVGRGSYEREDRRRRDRRSYSSNSSYSTSNSSQSDSSSDSSRSSSPSDHKRRYGSHKLATATATSRRHGGRAARSPSQIPRRPRRTSKGSLSPSYKRPAVDKRGVGHSPSSKRKKLSSPAPKKFDKLRRRRSSSSSDSDSSDTSYSDSESGSSSSDSSSGSRETPQKRVRATDKALNERKLISKPAEQSTKKRSPISIEIKKTSNMVGVSALASASNSADSDAEKDHDNGKDKEKDHVKEKDKDCKEKDKDKDGMKDKEGKKSRREELLKQLRAVEDAIAKKRSKLN", "length": 1000 }, "evidence": [ { "id": "A0A9J7FTE6", "url": "https://omabrowser.org/oma/group/A0A9J7FTE6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA destabilization", "id": "GO:0050779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" }, { "name": "mRNA cap binding complex binding", "id": "GO:0140262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140262", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" }, { "name": "precatalytic spliceosome", "id": "GO:0071011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071011", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 935, "end_pos": 937, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE6" }, { "id": "PF18044", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18044" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "E3 ligase CCCH-type zinc finger", "eco_id": "ECO_0000259", "start_pos": 313, "end_pos": 329, "start_aa": "Trp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 697, 834 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 336, "end_pos": 338 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 935, "end_pos": 937 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FRG6-1", "uniprot_ac": "A0A9J7FRG6", "uniprot_id": "A0A9J7FRG6_CRIGR", "mass": { "chemical_mass": 37312.0, "monoisotopic_mass": 37312.0 }, "refseq": { "ac": "XP_016820167", "name": "inactive hydroxysteroid dehydrogenase-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820167" }, "gene_names": [ { "name": "Hsdl1", "type": "recommended", "evidence": [ { "id": "A0A9J7FRG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6" } ] }, { "name": "Hsdl1", "type": "synonym", "evidence": [ { "id": "XP_016820167", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820167" } ] } ], "protein_names": [ { "name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7FRG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#names_and_taxonomy" } ] }, { "name": "inactive hydroxysteroid dehydrogenase-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016820167", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820167" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613583.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016820167", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820167" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRG6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hsdl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6", "locus": {} } ], "crossref": [ { "id": "cd05356", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05356", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774919", "url": "https://www.ncbi.nlm.nih.gov/gene/100774919", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774919", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774919", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QYGLMKC", "url": "https://omabrowser.org/oma/group/QYGLMKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FR08", "url": "https://www.orthodb.org/?gene=A0A9J7FR08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRG6", "url": "https://www.orthodb.org/?gene=A0A9J7FRG6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FVF4", "url": "https://www.orthodb.org/?gene=A0A9J7FVF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GRY1", "url": "https://www.orthodb.org/?gene=G3GRY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44889", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44889", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44889:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44889:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016820167", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820167", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FR08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRG6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K794", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K794", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K794-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K794-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRY1", "url": "https://www.uniprot.org/uniprotkb/G3GRY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRY1-1", "url": "https://www.uniprot.org/uniprotkb/G3GRY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQTAAREPALDWYSCSSSLEFGETCSVRSSCSSSLELVCFT", "length": 337, "header": "tr|A0A9J7FRG6-1|A0A9J7FRG6_CRIGR Isoform 1 of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FR08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#A0A9J7FR08-1", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQEQKGNGRQCWASRWGILSLCYFE", "length": 321, "header": "tr|A0A9J7FR08-1|A0A9J7FR08_CRIGR Computationally mapped isoform of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#A0A9J7FRG6-1", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQTAAREPALDWYSCSSSLEFGETCSVRSSCSSSLELVCFT", "length": 337, "header": "tr|A0A9J7FRG6-1|A0A9J7FRG6_CRIGR Isoform 1 of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#A0A9J7FVF4-1", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQKGNGRQCWASRWGILSLCYFE", "length": 319, "header": "tr|A0A9J7FVF4-1|A0A9J7FVF4_CRIGR Computationally mapped isoform of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K794-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#A0A9J7K794-1", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQNQS", "length": 301, "header": "tr|A0A9J7K794-1|A0A9J7K794_CRIGR Computationally mapped isoform of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "locus": {} }, { "isoform_ac": "G3GRY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6/entry#G3GRY1-1", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRPDLIKQYGRWAVVSGATDGIGKAYAEELACHGLNIILISQEEEKLQAVAKNIADTYRVETVVMVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPHPQYFAQLPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIITVSSGSCCKPTPHLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSVTAPGSFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANLLNRSLRYEDLSCQA", "length": 330, "header": "tr|G3GRY1-1|A0A9J7FRG6_CRIGR Computationally mapped isoform of Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Cricetulus griseus OX=10029 GN=Hsdl1 PE=3 SV=1 CANONICAL=A0A9J7FRG6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRY1", "url": "https://www.uniprot.org/uniprotkb/G3GRY1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRY1", "url": "https://www.uniprot.org/uniprotkb/G3GRY1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774919", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774919", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PJF6-1", "protein_name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "gene_name": "HSDL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYIEALALVGAWYTARKSITVVCDFYSLIRLHFIPRLVSRADLIKQYGRWAVVSGATDGIGRAYAEELASRGLNIVLISRSQEKLQMVAKDIADTYKVETDIIVADFSSGREIYDMIREALQDRDIGILVNNVGVFYPYPQYFTQVSEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIVTISSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATNVATPGSFLHKCPWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANILNRSLRKEALSCKA", "length": 330 }, "evidence": [ { "id": "A0A9J7FRG6", "url": "https://omabrowser.org/oma/group/A0A9J7FRG6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A5WWC6-1", "protein_name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "gene_name": "hsdl1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAVDSFQLLYREIARSCSGYVETLALVGACYMASKTVIFMRDCYSLIRLYFVPRLVRHRDLSQQYGQWAIICGASEAIAKAYAEELARHGICVILISKDLSSVSDTARLISNNYGVEAICIEADFNQGPSACKPIKDAISSKDIGFLVNSFDGTLEISQNFLELSESVLWGTINRNIAATTLVTRLALPAMMEKGRGAVVNISSGHCFHPIPRKAAFSASTAFLDNFSRSLHYEYGDQGVFVQSLLPFRVASQRPEGSAPPASWLVPSPQVYASHALSTLGISHRTTGYWPHSMQLGLVKMMPEWVWMLGSRVFTMAT", "length": 319 }, "evidence": [ { "id": "A0A9J7FRG6", "url": "https://omabrowser.org/oma/group/A0A9J7FRG6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3SXM5-1", "protein_name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "gene_name": "HSDL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRADLIKQYGRWAVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTYKVETDIIVADFSSGREIYLPIREALKDKDVGILVNNVGVFYPYPQYFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCSWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANILNRSLRKEALSCTA", "length": 330 }, "evidence": [ { "id": "A0A9J7FRG6", "url": "https://omabrowser.org/oma/group/A0A9J7FRG6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q4V8B7-1", "protein_name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "gene_name": "Hsdl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVDSFYLLYREIARSCSCYVEALALVGAWYTARKSIPVICDFYSLVRLHFIPRLGSRPDLIKQYGRWAVISGATDGIGKAYAEELASHGLNIILISQEEEKLQAVAKHIADTYRVETLVLVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPYPQYFSQVPEDTIWDIVNVNIAAASLMVHIVLPGMVERKKGAIVTVSSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVTSSVTAPGSFLRRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANLLNRSLRKEALSSQA", "length": 330 }, "evidence": [ { "id": "A0A9J7FRG6", "url": "https://omabrowser.org/oma/group/A0A9J7FRG6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BTX9-1", "protein_name": "Inactive hydroxysteroid dehydrogenase-like protein 1", "gene_name": "Hsdl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVDSFYLLYREIARSCNCYMEALALVGAWYTARKSITVICDFYSLVRLHFIPRLGSRPDLIKQYGRWAVISGATDGIGKAYAEELASHGLNVILISQEEEKLQAAAKHIADTYRVETLVLVADFSRGREIYAPIREALRDRDIGILVNDVGAFYPYPQYFSQVPEDTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIVTVSSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVTSSGAAPASFLHRCPWLAPSPRVYAQHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWLWVWGANLLNRSLRKEALSCQA", "length": 330 }, "evidence": [ { "id": "A0A9J7FRG6", "url": "https://omabrowser.org/oma/group/A0A9J7FRG6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRG6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FTC7-1", "uniprot_ac": "A0A9J7FTC7", "uniprot_id": "A0A9J7FTC7_CRIGR", "mass": { "chemical_mass": 52233.0, "monoisotopic_mass": 52233.0 }, "refseq": { "ac": "XP_007648780", "name": "carabin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648780" }, "gene_names": [ { "name": "Tbc1d10c", "type": "recommended", "evidence": [ { "id": "A0A9J7FTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7" } ] }, { "name": "Tbc1d10c", "type": "synonym", "evidence": [ { "id": "XP_007648780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648780" } ] } ], "protein_names": [ { "name": "Carabin isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7/entry#names_and_taxonomy" } ] }, { "name": "carabin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007648780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648780" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614797.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648780", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648780" } ] }, { "annotation": "Inhibits the Ras signaling pathway through its intrinsic Ras GTPase-activating protein (GAP) activity. Acts as a negative feedback inhibitor of the calcineurin signaling pathway that also mediates crosstalk between calcineurin and Ras.", "evidence": [ { "database": "UniProtKB", "id": "G3I402", "url": "https://www.uniprot.org/uniprotkb/G3I402#function" }, { "database": "UniProtKB", "id": "ARBA00060117", "url": "https://www.uniprot.org/uniprotkb/ARBA00060117#function" }, { "database": "UniProtKB", "id": "A0A9J7JKU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tbc1d10c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7", "locus": {} } ], "crossref": [ { "id": "100760518", "url": "https://www.ncbi.nlm.nih.gov/gene/100760518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760518", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760518", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RPHRSSF", "url": "https://omabrowser.org/oma/group/RPHRSSF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FTC7", "url": "https://www.orthodb.org/?gene=A0A9J7FTC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKU5", "url": "https://www.orthodb.org/?gene=A0A9J7JKU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I402", "url": "https://www.orthodb.org/?gene=G3I402", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648780", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648780", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I402", "url": "https://www.uniprot.org/uniprotkb/G3I402", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I402-1", "url": "https://www.uniprot.org/uniprotkb/G3I402-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQALGEDLVLPSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSAELGSWATDPFEGLLSGPQCLRTGRHVLQGMLCCVCLQAWPTPSRPHPPAGDEVGGDDLTLGEDHVSKIQEGKDAMPEGHPLSPAGPVLAPAVRGPDVPEEQPWHLSGVGSGPWRPAVDGDHWQGLAPPVSSARDVCVTPGTWRGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPTSQLQEEAFMSQVHSVALSERDLQREIRIQLAHLPKSSPGPAPLPQARLPGAQAIFESQQLAGVRGSTKPEIPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIEGPSRSHRGSASFLDTRF", "length": 479, "header": "tr|A0A9J7FTC7-1|A0A9J7FTC7_CRIGR Isoform 1 of Carabin isoform X1 OS=Cricetulus griseus OX=10029 GN=Tbc1d10c PE=4 SV=1 CANONICAL=A0A9J7FTC7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7/entry#A0A9J7FTC7-1", "sequence": { "sequence": "MAQALGEDLVLPSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSAELGSWATDPFEGLLSGPQCLRTGRHVLQGMLCCVCLQAWPTPSRPHPPAGDEVGGDDLTLGEDHVSKIQEGKDAMPEGHPLSPAGPVLAPAVRGPDVPEEQPWHLSGVGSGPWRPAVDGDHWQGLAPPVSSARDVCVTPGTWRGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPTSQLQEEAFMSQVHSVALSERDLQREIRIQLAHLPKSSPGPAPLPQARLPGAQAIFESQQLAGVRGSTKPEIPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIEGPSRSHRGSASFLDTRF", "length": 479, "header": "tr|A0A9J7FTC7-1|A0A9J7FTC7_CRIGR Isoform 1 of Carabin isoform X1 OS=Cricetulus griseus OX=10029 GN=Tbc1d10c PE=4 SV=1 CANONICAL=A0A9J7FTC7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7/entry#A0A9J7GTB6-1", "sequence": { "sequence": "MPEGHPLSPAGPVLAPAVRGPDVPEEQPWHLSGVGSGPWRPAVDGDHWQGLAPPVSSARDVCVTPGTWRGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPTSQLQEEAFMSQVHSVALSERDLQREIRIQLAHLPKSSPGPAPLPQARLPGAQAIFESQQLAGVRGSTKPEIPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIEGPSRSHRGSASFLDTRF", "length": 357, "header": "tr|A0A9J7GTB6-1|A0A9J7GTB6_CRIGR Computationally mapped isoform of Carabin isoform X4 OS=Cricetulus griseus OX=10029 GN=Tbc1d10c PE=4 SV=1 CANONICAL=A0A9J7FTC7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7/entry#A0A9J7JKU5-1", "sequence": { "sequence": "MASLGATQQNWAPGPQIPLKDSSVVPSVSEREGMCCKECYVVCASRPGQPPADLIRQREMKWVEMTSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAQMCQKNNPGTYQELAVAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQRGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPTSQLQEEAFMSQVHSVALSERDLQREIRIQLAHLPKSSPGPAPLPQARLPGAQAIFESQQLAGVRGSTKPEIPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIEGPSRSHRGSASFLDTRF", "length": 441, "header": "tr|A0A9J7JKU5-1|A0A9J7FTC7_CRIGR Computationally mapped isoform of Carabin isoform X1 OS=Cricetulus griseus OX=10029 GN=Tbc1d10c PE=4 SV=1 CANONICAL=A0A9J7FTC7-1" }, "locus": {} }, { "isoform_ac": "G3I402-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7/entry#G3I402-1", "sequence": { "sequence": "MAQALGEDLVLPSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSAELGPGQPPADLIRQREMKWVEMTSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAQMCQKNNPGTYQELAVAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQRGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPTSQLQEEAFMSQVHSVALSERDLQREIRIQLAHLPKSSPGPAPLPQARLPGAQAIFESQQLAGVRGSTKPEIPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIEGPSRSHRGSASFLDTRF", "length": 446, "header": "tr|G3I402-1|A0A9J7FTC7_CRIGR Computationally mapped isoform of Carabin isoform X1 OS=Cricetulus griseus OX=10029 GN=Tbc1d10c PE=4 SV=1 CANONICAL=A0A9J7FTC7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 186, "start_aa": "Thr", "end_pos": 186, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr186", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 89, "start_aa": "Thr", "end_pos": 89, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr89", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I402", "url": "https://www.uniprot.org/uniprotkb/G3I402" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I402", "url": "https://www.uniprot.org/uniprotkb/G3I402" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760518", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A724-1", "protein_name": "Carabin", "gene_name": "TBC1D10C", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAQALGEDLVQPCELQDDSSSLGSDSELSGPDPYRQADRYGFIGGSSAEPGPGHPPADLIRQREMKWVEMTSHWEKTMSRRYKKIKMQCRKGIPSALRARCWPLLCGAHVCQKNNPGTYQKLAEAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLEVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPRVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGVKVLFRVGLTLVRLALGATEQRLACPGLLETLSALRAIPPAQLQEEVFMPQVHSVALSEQDLQREIKAQLAQLPPPRPQARLAGAQAIFEAQQLAGTQGAARPEVPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRSRGPPIESPTRSHRSSTSFLDTRF", "length": 440 }, "evidence": [ { "id": "A0A9J7FTC7", "url": "https://omabrowser.org/oma/group/A0A9J7FTC7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8C9V1-1", "protein_name": "Carabin", "gene_name": "Tbc1d10c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQALGEDLLSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSGELRLCQPSADLIRQREMKWVEMTLHWEKTMSRRYKKVKIQCRKGIPSALRARCWPLLCGARMCQKNNPGTYQELAAAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRQLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPPTQLQEEVFMSQVHSVTLSERVLQQEIRIQLAQLSKSLPGPAPLPQARLPGAQAIFESQQLAGVRESTKPEIPRIVVQPPEEPKPPRRKPQTRGKTFHGLLIRARGPPIEGPSRSQRGSASFLDTRF", "length": 444 }, "evidence": [ { "id": "A0A9J7FTC7", "url": "https://omabrowser.org/oma/group/A0A9J7FTC7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IV04-1", "protein_name": "Carabin", "gene_name": "TBC1D10C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQALGEDLVQPPELQDDSSSLGSDSELSGPGPYRQADRYGFIGGSSAEPGPGHPPADLIRQREMKWVEMTSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNSPGTYQELAEAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACPGLLETLGALRAIPPAQLQEEAFMSQVHSVVLSERDLQREIKAQLAQLPDSAPGPPPRPQVRLAGAQAIFEAQQLAGVRRGAKPEVPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRARGPPIEGPPRPQRGSTSFLDTRF", "length": 446 }, "evidence": [ { "id": "A0A9J7FTC7", "url": "https://omabrowser.org/oma/group/A0A9J7FTC7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7" } ], "pmid": "" }, { "name": "small GTPase 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"A0A9J7FTC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC7" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 313, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 89, 186 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FKZ3-1", "uniprot_ac": "A0A9J7FKZ3", "uniprot_id": "A0A9J7FKZ3_CRIGR", "mass": { "chemical_mass": 23296.0, "monoisotopic_mass": 23296.0 }, "refseq": { "ac": "XP_027262974", "name": "protein DPCD isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262974" }, "gene_names": [ { "name": "Dpcd", "type": "recommended", "evidence": [ { "id": "A0A9J7FKZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3" } ] }, { "name": "Dpcd", "type": "synonym", "evidence": [ { "id": "XP_027262974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262974" } ] } ], "protein_names": [ { "name": "Protein DPCD", "type": "recommended", "evidence": [ { "id": "A0A9J7FKZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3/entry#names_and_taxonomy" } ] }, { "name": "protein DPCD isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027262974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262974" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dpcd", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FKZ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FKZ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751595", "url": "https://www.ncbi.nlm.nih.gov/gene/100751595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751595", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751595", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PILCEME", "url": "https://omabrowser.org/oma/group/PILCEME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKZ3", "url": "https://www.orthodb.org/?gene=A0A9J7FKZ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I578", "url": "https://www.orthodb.org/?gene=G3I578", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31921:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31921:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I578", "url": "https://www.uniprot.org/uniprotkb/G3I578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I578-1", "url": "https://www.uniprot.org/uniprotkb/G3I578-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVTSWLESLRAAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVLSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLDDSALSFAHANCTLIISVRFAQTWHQEELPLPHLLPWLQASQALVSEAKGGPGG", "length": 206, "header": "tr|A0A9J7FKZ3-1|A0A9J7FKZ3_CRIGR Isoform 1 of Protein DPCD OS=Cricetulus griseus OX=10029 GN=Dpcd PE=3 SV=1 CANONICAL=A0A9J7FKZ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3/entry#A0A9J7FKZ3-1", "sequence": { "sequence": "MAVTSWLESLRAAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVLSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLDDSALSFAHANCTLIISVRFAQTWHQEELPLPHLLPWLQASQALVSEAKGGPGG", "length": 206, "header": "tr|A0A9J7FKZ3-1|A0A9J7FKZ3_CRIGR Isoform 1 of Protein DPCD OS=Cricetulus griseus OX=10029 GN=Dpcd PE=3 SV=1 CANONICAL=A0A9J7FKZ3-1" }, "locus": {} }, { "isoform_ac": "G3I578-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ3/entry#G3I578-1", "sequence": { "sequence": "MAVTSWLESLRAAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVLSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLDDSALSFAHANCTLIISYQKPKEVLAAESELQKELKKVKTAHSSDGDCKTQ", "length": 203, "header": "tr|G3I578-1|A0A9J7FKZ3_CRIGR Computationally mapped isoform of Protein DPCD OS=Cricetulus griseus OX=10029 GN=Dpcd PE=3 SV=1 CANONICAL=A0A9J7FKZ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I578", "url": "https://www.uniprot.org/uniprotkb/G3I578" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I578", "url": "https://www.uniprot.org/uniprotkb/G3I578" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751595", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1S8U0-1", "protein_name": "Protein DPCD", "gene_name": "DPCD", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVTGWLESLRAAEKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGALGQWQIEVGEPAVPGAGSLGPELITESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCVVVRTTNKKYYKKFPIPDLDRYQLPLDDSLLSFAHANSTLIISYHKPKEVLVAESELQKELKKVKTAHNSDGDCKTQ", "length": 203 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q0P448-1", "protein_name": "Protein DPCD", "gene_name": "dpcd", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVQQWADALKKAKKTALISDGKRKVHYQFEDGNEMAEEYDLKTDELVMRKWRHKTTFGGQGQWTLEVGETNPTGATSDLIKENSSNPLFMRRDTKTSFQWRIRNISYPLEVYSVTAEPMERCCVIRTSNKKYYKKFSIPDLERCQLPLESTALSFTHANNTLIISYKKPKEILTLEQELLGELKKLKGTSEGDIDCKTQ", "length": 200 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q24K21-1", "protein_name": "Protein DPCD", "gene_name": "DPCD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVTGWLESLRAAEKTALLQDGRRKVHYLFPNGKEMAEEYDEKTNELLVRKWRVKSALGALGQWQIEVGEPALPGAGSLGPELITESNANPIFVRKDTKMSFQWRIRNLPYPKDVYNVFVDQKERCVVVRTTNKKYYKKFSIPDLERYQLPLDESLLSFAHANSTLIISYQKPKEVLVAESELQKELKKVKTAHSSDGDCKTQ", "length": 203 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYM4-1", "protein_name": "Protein DPCD", "gene_name": "Dpcd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVTSWLEILRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPMPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQKELKKVKTAHSSDGDCKTQ", "length": 203 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BPA8-1", "protein_name": "Protein DPCD", "gene_name": "Dpcd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVTSWLEVLRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQKELKKVKTAHGSAGDCKTQ", "length": 203 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BVM2-1", "protein_name": "Protein DPCD", "gene_name": "DPCD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ", "length": 203 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W0M5-1", "protein_name": "Protein DPCD", "gene_name": "Dmel\\CG13901", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSYQNWLNYLQAAEKNSMISGRARKVLYKFPDGRQMAEEYNMDTGIVQRRAWKSKSNKIMGESEWEIELGDEPRQLNWSGNKPPGSGEETDSLAGGDFTLRESNTAPLLTKRITKKNIEWRIRNMPYSLDTYSVTADPEKRAIVVRTSNKKYYKVIPVPELDRCGVKPAQESLSVHHQFNTLIITYQKPDILCEMEAQVLLLLKNVDTETDMDDLLKGLMAK", "length": 222 }, "evidence": [ { "id": "A0A9J7FKZ3", "url": "https://omabrowser.org/oma/group/A0A9J7FKZ3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FLR1-1", "uniprot_ac": "A0A9J7FLR1", "uniprot_id": "A0A9J7FLR1_CRIGR", "mass": { "chemical_mass": 44672.0, "monoisotopic_mass": 44672.0 }, "refseq": { "ac": "XP_027239891", "name": "dnaJ homolog subfamily B member 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239891" }, "gene_names": [ { "name": "Dnajb13", "type": "recommended", "evidence": [ { "id": "A0A9J7FLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ] }, { "name": "Dnajb13", "type": "synonym", "evidence": [ { "id": "XP_027239891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239891" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily B member 13 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily B member 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027239891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239891" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615229.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027239891.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027239891", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239891" } ] }, { "annotation": "Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.", "evidence": [ { "database": "UniProtKB", "id": "G3I9W3", "url": "https://www.uniprot.org/uniprotkb/G3I9W3#function" }, { "database": "UniProtKB", "id": "ARBA00056649", "url": "https://www.uniprot.org/uniprotkb/ARBA00056649#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajb13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FLR1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FLR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10747", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10747", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759263", "url": "https://www.ncbi.nlm.nih.gov/gene/100759263", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759263", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759263", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SSKYVYH", "url": "https://omabrowser.org/oma/group/SSKYVYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FLR1", "url": "https://www.orthodb.org/?gene=A0A9J7FLR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I9W3", "url": "https://www.orthodb.org/?gene=G3I9W3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24078:SF519", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24078:SF519", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027239891", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239891", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I9W3", "url": "https://www.uniprot.org/uniprotkb/G3I9W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I9W3-1", "url": "https://www.uniprot.org/uniprotkb/G3I9W3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQTSRQQVARAILAHHRPELSDCPPASPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 395, "header": "tr|A0A9J7FLR1-1|A0A9J7FLR1_CRIGR Isoform 1 of DnaJ homolog subfamily B member 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FLR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7FLR1-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQTSRQQVARAILAHHRPELSDCPPASPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 395, "header": "tr|A0A9J7FLR1-1|A0A9J7FLR1_CRIGR Isoform 1 of DnaJ homolog subfamily B member 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7FQ18-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQTSRQQVARAILAHHRPELSDCPPASPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHPKYYKMVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQLLRQALLT", "length": 358, "header": "tr|A0A9J7FQ18-1|A0A9J7FQ18_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X3 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GW24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7GW24-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 299, "header": "tr|A0A9J7GW24-1|A0A9J7GW24_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X7 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7GWE5-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDQTSRQQVARAILAHHRPELSDCPPASPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVQTPSGGRKA", "length": 316, "header": "tr|A0A9J7GWE5-1|A0A9J7GWE5_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X6 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7GXM2-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDPSPVTHTPDPSSRSHVSTAVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 371, "header": "tr|A0A9J7GXM2-1|A0A9J7GXM2_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#A0A9J7K6Y2-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHWKKEKTESLDNQSLSWSPSLERDPKRRKEGMNLERENTSHGGGTSSSCFYHRPSNPPHGLSQRKLTGPGEEPHSCVPKSKTPEYLAH", "length": 353, "header": "tr|A0A9J7K6Y2-1|A0A9J7K6Y2_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X4 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} }, { "isoform_ac": "G3I9W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1/entry#G3I9W3-1", "sequence": { "sequence": "MGVDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSNEPSAPEIFKQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLRGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDKYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFVVKEKLHPRFRRERDNLLFVYPIPLGKALTCCTVEVRTLDDRLLNIPINDIVHPKYYKMVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQLLRQALLT", "length": 316, "header": "tr|G3I9W3-1|A0A9J7FLR1_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dnajb13 PE=4 SV=1 CANONICAL=A0A9J7FLR1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I9W3", "url": "https://www.uniprot.org/uniprotkb/G3I9W3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I9W3", "url": "https://www.uniprot.org/uniprotkb/G3I9W3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759263", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759263", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C599-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGQDYYAVLELGRNATDADIKKAYRLLALENHPQKCKEPLAQERFRLLAEAYDVLSDPVRRGIYDRFGEEGLKGGIPVGSDGEDAWTAGYVFHNNPDKVFKEFFGGHNPFAEFFTKDGLEVTLPFGGLHGRGVMKQDPPMVWDLHVSLEDLFFGCTKKMKISHRVMNEDGQTSTIRDKILIIDVQPGWKQGTRVTFEKEGDQGPNIIPSDITFVVQEKPHPRFKRTNDDLIYVASIPLGKALIGCTVDVRTLDGRLLSIPINDIVHPTYCKVVPGEGMPLLEDPRRRGDLLIHFNICFPKRLTPDKKVLLRRALLS", "length": 316 }, "evidence": [ { "id": "A0A9J7FLR1", "url": "https://omabrowser.org/oma/group/A0A9J7FLR1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SUR7-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQDYYAVLQITRNSEDAQIKNAYRKLALKNHPLRSIEPSSAETFRQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPEKVFHEFFGGDNPFNEFFDAEGNEVDLNFGGLRGRGVKKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDGFSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDDLFFVNAIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKKVPGEGMPLPEEPARKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "A0A9J7FLR1", "url": "https://omabrowser.org/oma/group/A0A9J7FLR1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4JY55-1", "protein_name": "DNAJ heat shock family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGLDYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEAKYEVMFQVLSDPQKRAVYDQYGEEGLSDMPPPGSTGNNGRAGGFNPRNAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRTYSEGTPAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPGWKKGTKIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTVNINTLDGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEPRNKGDLKIKFDVQFPARLTTEQKSALKRVLAG", "length": 347 }, "evidence": [ { "id": "A0A9J7FLR1", "url": "https://omabrowser.org/oma/group/A0A9J7FLR1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59910-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "DNAJB13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQDYYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAEGSEVDLNFGGLQGRGVKKQDPQVERDLYLSLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "A0A9J7FLR1", "url": "https://omabrowser.org/oma/group/A0A9J7FLR1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80Y75-1", "protein_name": "DnaJ homolog subfamily B member 13", "gene_name": "Dnajb13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSSEPGAPEIFKQIAEAYDVLSDPVKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGNDIDLNFGGLWGRGVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDRYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT", "length": 316 }, "evidence": [ { "id": "A0A9J7FLR1", "url": "https://omabrowser.org/oma/group/A0A9J7FLR1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "radial spoke", "id": "GO:0001534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001534", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "axonemal central apparatus assembly", "id": "GO:1904158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904158", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLR1" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 110, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 319, "end_pos": 321 }, { "start_pos": 345, "end_pos": 347 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FM56-1", "uniprot_ac": "A0A9J7FM56", "uniprot_id": "A0A9J7FM56_CRIGR", "mass": { "chemical_mass": 29360.0, "monoisotopic_mass": 29360.0 }, "refseq": { "ac": "XP_016833378", "name": "coiled-coil domain-containing protein 90B, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833378" }, "gene_names": [ { "name": "Ccdc90b", "type": "recommended", "evidence": [ { "id": "A0A9J7FM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56" } ] }, { "name": "Ccdc90b", "type": "synonym", "evidence": [ { "id": "XP_016833378", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833378" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 90B, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 90B, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016833378", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833378" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614318.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833378", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833378" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc90b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56", "locus": {} } ], "crossref": [ { "id": "A0A9J7FM56", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FM56", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751582", "url": "https://www.ncbi.nlm.nih.gov/gene/100751582", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751582", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751582", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAYMRFR", "url": "https://omabrowser.org/oma/group/MAYMRFR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FM56", "url": "https://www.orthodb.org/?gene=A0A9J7FM56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HUH9", "url": "https://www.orthodb.org/?gene=G3HUH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14360:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14360:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833378", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833378", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FM56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FM56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HUH9", "url": "https://www.uniprot.org/uniprotkb/G3HUH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HUH9-1", "url": "https://www.uniprot.org/uniprotkb/G3HUH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLVGRGLNCWGLGGGLPASLETHPLWSWASAGLLSFLTTTTKTSYDRRPVDVTPLEQRKLTFDTHALVKDLENHGFDKTQAQTVVSVLSKLSNVSLDTIYKEMVTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTHESSRIRADNKLDINLERSRVTDMFTDQEKQLMEATNEFTKKDTQTKSIISETSNKIDTEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWKEY", "length": 258, "header": "tr|A0A9J7FM56-1|A0A9J7FM56_CRIGR Isoform 1 of Coiled-coil domain-containing protein 90B, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc90b PE=3 SV=1 CANONICAL=A0A9J7FM56-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FM56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56/entry#A0A9J7FM56-1", "sequence": { "sequence": "MGLVGRGLNCWGLGGGLPASLETHPLWSWASAGLLSFLTTTTKTSYDRRPVDVTPLEQRKLTFDTHALVKDLENHGFDKTQAQTVVSVLSKLSNVSLDTIYKEMVTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTHESSRIRADNKLDINLERSRVTDMFTDQEKQLMEATNEFTKKDTQTKSIISETSNKIDTEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWKEY", "length": 258, "header": "tr|A0A9J7FM56-1|A0A9J7FM56_CRIGR Isoform 1 of Coiled-coil domain-containing protein 90B, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc90b PE=3 SV=1 CANONICAL=A0A9J7FM56-1" }, "locus": {} }, { "isoform_ac": "G3HUH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56/entry#G3HUH9-1", "sequence": { "sequence": "MRSRWIWRLLRPDGGGSRWTSAPHGCLSPVLRRGFLTTTTKTSYDRRPVDVTPLEQRKLTFDTHALVKDLENHGFDKTQAQTVVSVLSKLSNVSLDTIYKEMVTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTHESSRIRADNKLDINLERSRVTDMFTDQEKQLMEATNEFTKKDTQTKSIISETSNKIDTEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWKEY", "length": 256, "header": "tr|G3HUH9-1|A0A9J7FM56_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 90B, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc90b PE=3 SV=1 CANONICAL=A0A9J7FM56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HUH9", "url": "https://www.uniprot.org/uniprotkb/G3HUH9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HUH9", "url": "https://www.uniprot.org/uniprotkb/G3HUH9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751582", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751582", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QGC9-1", "protein_name": "Coiled-coil domain-containing protein 90B, mitochondrial", "gene_name": "ccdc90b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSWGIFMRRQQQFCSLLKLHQLNIQPLCHQRGLHKTNAVKTYDVRKVELTPLEQRKLTFDSHALVKELESSGFEKRQAELIVTALVTLTTANIDIVYRDMVTGAHQEIALQQIMAHLDAIRKDMVILEKSEFANLRSENAKMKTELEQITNRLLEESQKIRAEAKLDINLERSRVTDMFTEQEKKLMDVRMEFQKMNADIESEAVETSKKIDIQVASLKTLLESLKLETVRYLAACIFTCLAIALGFYRFWK", "length": 253 }, "evidence": [ { "id": "A0A9J7FM56", "url": "https://omabrowser.org/oma/group/A0A9J7FM56/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1STU7-1", "protein_name": "Coiled-coil domain containing 90B", "gene_name": "CCDC90B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MWSRRVWLLLRSEGSGRRWDSAPRRRFPSALRRDFLTTATKEGYDMRRVDITPLEQRKLTFDTHALVQNLETHGFDKAQAETIVSVLTTLSNVSLDTLYKEMVTQAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENQKMKIELEQVKQQLMNETSRIRADNKLDINLERSRVIDMFTDQEKKLMEASTEFTKNDTKTRGIISETSNKIDIEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRLWK", "length": 254 }, "evidence": [ { "id": "A0A9J7FM56", "url": "https://omabrowser.org/oma/group/A0A9J7FM56/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q4V897-1", "protein_name": "Coiled-coil domain-containing protein 90B, mitochondrial", "gene_name": "Ccdc90b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNRWIWRFLRPECSGIRWISSPHGRLSPALRRGFLTTTTKSDYDRRPVEITPLEQRKLTFDTHALVQDLETHGFDKGQAQTIVSVLSTLSNVSLDTVYKEMVTKAQQEITIQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLINETSRIRADNRLDINLERSRVTDMFTDQEKQLMEATNEFTKKDMQTKSIISETSNKIDTEIASLKTLMESSKLETIRYLAASVFTCLAIALGFYRFWKEN", "length": 256 }, "evidence": [ { "id": "A0A9J7FM56", "url": "https://omabrowser.org/oma/group/A0A9J7FM56/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C3X2-1", "protein_name": "Coiled-coil domain-containing protein 90B, mitochondrial", "gene_name": "Ccdc90b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRSRWIWRFLRPDGGGIRWTSTPHGRLSPALRRGFLTTTTKSDYDRRPVDITPLEQRKLTFDTHALVQDLETHGFDKTQAQTIVSVLSTLSNVSLDTIYKEMVTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTNETSRIRADNKLDINLERSRVTDMFTDQEKQLIEATNEFAKKDTQTKSIISETSNKIDTEIASLKTLMESSKLETIRYLAASVFTCLAIALGFYRFWKEN", "length": 256 }, "evidence": [ { "id": "A0A9J7FM56", "url": 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"database": "UniProtKB", "id": "A0A9J7FM56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"uniprot_ac": "A0A9J7FQ11", "uniprot_id": "A0A9J7FQ11_CRIGR", "mass": { "chemical_mass": 30385.0, "monoisotopic_mass": 30385.0 }, "refseq": { "ac": "XP_016833692", "name": "ectodysplasin-A receptor-associated adapter protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833692" }, "gene_names": [ { "name": "Edaradd", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" } ] }, { "name": "Edaradd", "type": "synonym", "evidence": [ { "id": "XP_016833692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833692" } ] } ], "protein_names": [ { "name": "Ectodysplasin-A receptor-associated adapter protein", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11/entry#names_and_taxonomy" } ] }, { "name": "ectodysplasin-A receptor-associated adapter protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016833692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833692" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614408.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833692" } ] }, { "annotation": "Adapter protein that interacts with EDAR DEATH domain and couples the receptor to EDA signaling pathway during morphogenesis of ectodermal organs. Mediates the activation of NF-kappa-B.", "evidence": [ { "database": "UniProtKB", "id": "G3HWE0", "url": "https://www.uniprot.org/uniprotkb/G3HWE0#function" }, { "database": "UniProtKB", "id": "ARBA00058509", "url": "https://www.uniprot.org/uniprotkb/ARBA00058509#function" }, { "database": "UniProtKB", "id": "A0A9J7K404", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K404#function" }, { "database": "UniProtKB", "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11#function" }, { "database": "UniProtKB", "id": "A0A9J7JLC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Edaradd", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQ11", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQ11", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765451", "url": "https://www.ncbi.nlm.nih.gov/gene/100765451", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765451", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765451", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CRENCTC", "url": "https://omabrowser.org/oma/group/CRENCTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FQ11", "url": "https://www.orthodb.org/?gene=A0A9J7FQ11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HWE0", "url": "https://www.orthodb.org/?gene=G3HWE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28469", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28469", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28469:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28469:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833692", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K404", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K404", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K404-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K404-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWE0", "url": "https://www.uniprot.org/uniprotkb/G3HWE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWE0-1", "url": "https://www.uniprot.org/uniprotkb/G3HWE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLCAQITWQRSQWRTQTPALYLSACQTSIPFKTPASLKPRSVMQSLPTVHQILMINIRIREKKMIFQTALEIPFQVLQDGRENGPAVCFLTFTGCGTQAPVHIHSNSKSKCKLKNCQEHRDVCTSMSWSWNPQPGVSRNQPCKEGCSCSSCLPRVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVVQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDNSMHF", "length": 262, "header": "tr|A0A9J7FQ11-1|A0A9J7FQ11_CRIGR Isoform 1 of Ectodysplasin-A receptor-associated adapter protein OS=Cricetulus griseus OX=10029 GN=Edaradd PE=4 SV=1 CANONICAL=A0A9J7FQ11-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11/entry#A0A9J7FQ11-1", "sequence": { "sequence": "MTLCAQITWQRSQWRTQTPALYLSACQTSIPFKTPASLKPRSVMQSLPTVHQILMINIRIREKKMIFQTALEIPFQVLQDGRENGPAVCFLTFTGCGTQAPVHIHSNSKSKCKLKNCQEHRDVCTSMSWSWNPQPGVSRNQPCKEGCSCSSCLPRVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVVQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDNSMHF", "length": 262, "header": "tr|A0A9J7FQ11-1|A0A9J7FQ11_CRIGR Isoform 1 of Ectodysplasin-A receptor-associated adapter protein OS=Cricetulus griseus OX=10029 GN=Edaradd PE=4 SV=1 CANONICAL=A0A9J7FQ11-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11/entry#A0A9J7JLC3-1", "sequence": { "sequence": "MQSLPTVHQILMINIRIREKKMIFQTALEIPFQVLQDGRENGPAVCFLTFTGCGTQAPVHIHSNSKSKCKLKNCQEHRDVCTSMSWSWNPQPGVSRNQPCKEGCSCSSCLPRVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVVQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDNSMHF", "length": 219, "header": "tr|A0A9J7JLC3-1|A0A9J7JLC3_CRIGR Computationally mapped isoform of Ectodysplasin-A receptor-associated adapter protein OS=Cricetulus griseus OX=10029 GN=Edaradd PE=4 SV=1 CANONICAL=A0A9J7FQ11-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K404-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11/entry#A0A9J7K404-1", "sequence": { "sequence": "MTLCAQITWQRSQWRTQTPALYLSACQTSIPFKTPASLKGEENDFPDSTGDPLSGVSRNQPCKEGCSCSSCLPRVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVVQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDNSMHF", "length": 181, "header": "tr|A0A9J7K404-1|A0A9J7FQ11_CRIGR Computationally mapped isoform of Ectodysplasin-A receptor-associated adapter protein OS=Cricetulus griseus OX=10029 GN=Edaradd PE=4 SV=1 CANONICAL=A0A9J7FQ11-1" }, "locus": {} }, { "isoform_ac": "G3HWE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11/entry#G3HWE0-1", "sequence": { "sequence": "MASPDDPLRSDHMAKEPVEDTDPSTLSFGMSDKYPIQDTGLPKAKECDAVTSNCPPNSDDQHQNQGEENDFPDSTGDPLSGVSRNQPCKEGCSCSSCLPRVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVVQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDNSMHF", "length": 207, "header": "tr|G3HWE0-1|A0A9J7FQ11_CRIGR Computationally mapped isoform of Ectodysplasin-A receptor-associated adapter protein OS=Cricetulus griseus OX=10029 GN=Edaradd PE=4 SV=1 CANONICAL=A0A9J7FQ11-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWE0", "url": "https://www.uniprot.org/uniprotkb/G3HWE0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWE0", "url": "https://www.uniprot.org/uniprotkb/G3HWE0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765451", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765451", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BPZ2-1", "protein_name": "Ectodysplasin-A receptor-associated adapter protein", "gene_name": "EDARADD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASPDDPLRADHLAKEPVEDTDPSTTSLNTSDKYPIQDTGLPKEEECDPITLNCPANSDVQHQGEENGFRDSTGDPLSDVSKDASCTETCSCPSCSLQVPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLLRNSQRTVGQLMELCRLYHRADVEKVLRRWVDEEWPKRGRGEHPRNF", "length": 205 }, "evidence": [ { "id": "A0A9J7FQ11", "url": "https://omabrowser.org/oma/group/A0A9J7FQ11/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LYE0-1", "protein_name": "Ectodysplasin-A receptor-associated adapter protein", "gene_name": "Edaradd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASPDDPLRSDHMAKEPVEDTDPSTLSFAMSDKYPIQDTGLPKAKECDAVTSNCPPNSDDQHQGEENDFPDSTGDPLSGVSRNQPCKEGCPCSSCSPRAPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLFRNSQRTVGQLMELCRLYHRADVEKILRRWVDEEWPHRGPLDGSMHF", "length": 205 }, "evidence": [ { "id": "A0A9J7FQ11", "url": "https://omabrowser.org/oma/group/A0A9J7FQ11/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LDN7-1", "protein_name": "Ectodysplasin-A receptor-associated adapter protein", "gene_name": "EDARADD", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASPDDPLRADHLAKEPVEDTDPSTISLNMSDKYPIQDTGLPKAEECDPVALNCPTNSDMQHQGEENGFPDSTRDPLSDLSKVEPCAKKCTCSSCSLRAPTISDLLNDQDLLDVIRIKLDPCHPTVKNWRNFASKWGMPYDELCFLEQRPQSPTLEFLLRNSQRTVGQLMELCRLYHRADVEKVLRRWVDEEWPKRSREDHPRNV", "length": 205 }, "evidence": [ { "id": "A0A9J7FQ11", "url": "https://omabrowser.org/oma/group/A0A9J7FQ11/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ11" }, { "id": "PF00531", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Death", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 246, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT67-1", "uniprot_ac": "A0A9J7FT67", "uniprot_id": "A0A9J7FT67_CRIGR", "mass": { "chemical_mass": 41971.0, "monoisotopic_mass": 41971.0 }, "refseq": { "ac": "XP_003509492", "name": "acidic fibroblast growth factor intracellular-binding protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509492" }, "gene_names": [ { "name": "Fibp", "type": "recommended", "evidence": [ { "id": "A0A9J7FT67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67" } ] }, { "name": "Fibp", "type": "synonym", "evidence": [ { "id": "XP_003509492", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509492" } ] } ], "protein_names": [ { "name": "Acidic fibroblast growth factor intracellular-binding protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FT67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67/entry#names_and_taxonomy" } ] }, { "name": "acidic fibroblast growth factor intracellular-binding protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003509492", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509492" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614712.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509492", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509492" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fibp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT67", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT67", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766825", "url": "https://www.ncbi.nlm.nih.gov/gene/100766825", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766825", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766825", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MTVVTCC", "url": "https://omabrowser.org/oma/group/MTVVTCC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FT67", "url": "https://www.orthodb.org/?gene=A0A9J7FT67", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I2G3", "url": "https://www.orthodb.org/?gene=G3I2G3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13223:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13223:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509492", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509492", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT67-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I2G3", "url": "https://www.uniprot.org/uniprotkb/G3I2G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I2G3-1", "url": "https://www.uniprot.org/uniprotkb/G3I2G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAGVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYTFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDVDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLSVFSEMETNFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRLFLNQYSLSVHSLDGFRHQVLWDRYMGTLRGCLLRLYHD", "length": 364, "header": "tr|A0A9J7FT67-1|A0A9J7FT67_CRIGR Isoform 1 of Acidic fibroblast growth factor intracellular-binding protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Fibp PE=4 SV=1 CANONICAL=A0A9J7FT67-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT67-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67/entry#A0A9J7FT67-1", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAGVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYTFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDVDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLSVFSEMETNFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRLFLNQYSLSVHSLDGFRHQVLWDRYMGTLRGCLLRLYHD", "length": 364, "header": "tr|A0A9J7FT67-1|A0A9J7FT67_CRIGR Isoform 1 of Acidic fibroblast growth factor intracellular-binding protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Fibp PE=4 SV=1 CANONICAL=A0A9J7FT67-1" }, "locus": {} }, { "isoform_ac": "G3I2G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67/entry#G3I2G3-1", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAGVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYTFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQMDDMDVDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLSVFSEMETNFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRLFLNQYSLSVHSLDGFRHQVLWDRYMGTLRGCLLRLYHD", "length": 357, "header": "tr|G3I2G3-1|A0A9J7FT67_CRIGR Computationally mapped isoform of Acidic fibroblast growth factor intracellular-binding protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Fibp PE=4 SV=1 CANONICAL=A0A9J7FT67-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 220, "start_aa": "Thr", "end_pos": 220, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr220", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I2G3", "url": "https://www.uniprot.org/uniprotkb/G3I2G3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I2G3", "url": "https://www.uniprot.org/uniprotkb/G3I2G3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766825", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766825", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8Y8E0-1", "protein_name": "FGF1 intracellular binding protein", "gene_name": "Fibp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATTGVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYTFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDVDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMETNFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRLFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD", "length": 364 }, "evidence": [ { "id": "A0A9J7FT67", "url": "https://omabrowser.org/oma/group/A0A9J7FT67/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1RU24-1", "protein_name": "FGF1 intracellular binding protein", "gene_name": "FIBP", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAAVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQVDDMDMDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLKDVQLFLNQYSASVHSLDGFRHQALWDRYMGTLHGCLLRLYHD", "length": 357 }, "evidence": [ { "id": "A0A9J7FT67", "url": "https://omabrowser.org/oma/group/A0A9J7FT67/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O43427-1", "protein_name": "Acidic fibroblast growth factor intracellular-binding protein", "gene_name": "FIBP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDMDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD", "length": 364 }, "evidence": [ { "id": "A0A9J7FT67", "url": "https://omabrowser.org/oma/group/A0A9J7FT67/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "platelet aggregation", "id": "GO:0070527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070527", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "fibroblast growth factor binding", "id": "GO:0017134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017134", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 220 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 281, "end_pos": 283 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FRJ0-1", "uniprot_ac": "A0A9J7FRJ0", "uniprot_id": "A0A9J7FRJ0_CRIGR", "mass": { "chemical_mass": 13001.0, "monoisotopic_mass": 13001.0 }, "refseq": { "ac": "XP_027264506", "name": "DNA polymerase delta subunit 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264506" }, "gene_names": [ { "name": "Pold4", "type": "recommended", "evidence": [ { "id": "A0A9J7FRJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0" } ] }, { "name": "Pold4", "type": "synonym", "evidence": [ { "id": "XP_027264506", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264506" } ] } ], "protein_names": [ { "name": "DNA polymerase delta subunit 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027264506", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264506" }, { "id": "A0A9J7FRJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264506", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264506" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pold4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FRJ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FRJ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761682", "url": "https://www.ncbi.nlm.nih.gov/gene/100761682", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007218", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007218", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761682", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTGISRM", "url": "https://omabrowser.org/oma/group/CTGISRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRJ0", "url": "https://www.orthodb.org/?gene=A0A9J7FRJ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I406", "url": "https://www.orthodb.org/?gene=G3I406", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14303:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14303:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04081", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04081", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264506", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264506", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I406", "url": "https://www.uniprot.org/uniprotkb/G3I406", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I406-1", "url": "https://www.uniprot.org/uniprotkb/G3I406-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRKRFITDSYPVVKKREGPPGHSKRELAPELGEDTQSLSQEEAQLELLRQFDLAWQYGPCTGITRMQRWHRAEQMGLKPPLEVHQVLKTHSEDPRFQFSHQELLDRIHGQ", "length": 111, "header": "tr|A0A9J7FRJ0-1|A0A9J7FRJ0_CRIGR Isoform 1 of DNA polymerase delta subunit 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pold4 PE=4 SV=1 CANONICAL=A0A9J7FRJ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0/entry#A0A9J7FRJ0-1", "sequence": { "sequence": "MGRKRFITDSYPVVKKREGPPGHSKRELAPELGEDTQSLSQEEAQLELLRQFDLAWQYGPCTGITRMQRWHRAEQMGLKPPLEVHQVLKTHSEDPRFQFSHQELLDRIHGQ", "length": 111, "header": "tr|A0A9J7FRJ0-1|A0A9J7FRJ0_CRIGR Isoform 1 of DNA polymerase delta subunit 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pold4 PE=4 SV=1 CANONICAL=A0A9J7FRJ0-1" }, "locus": {} }, { "isoform_ac": "G3I406-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0/entry#G3I406-1", "sequence": { "sequence": "MGRKRFITDSYPVVKKREGPPGHSKRELAPELGEDTQSLSQEEAQLELLRQFDLAWQYGPCTGITRMQRWHRAEQMGLKPPLEVHQVLKTHSEDPRFQFSLWHLYPL", "length": 107, "header": "tr|G3I406-1|A0A9J7FRJ0_CRIGR Computationally mapped isoform of DNA polymerase delta subunit 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pold4 PE=4 SV=1 CANONICAL=A0A9J7FRJ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I406", "url": "https://www.uniprot.org/uniprotkb/G3I406" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I406", "url": "https://www.uniprot.org/uniprotkb/G3I406" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761682", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761682", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1R563-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "pold4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTISYQRPDMTPKRGLITDTFKVVKKARRGGKRSKSPSPPKAEPEPPQLSEREKDIQELKNFDLDWKFGPCTGISRLQRWERAALHGLNPPQEIKDILLKEDTDPEYTQSLWRDYPF", "length": 117 }, "evidence": [ { "id": "A0A9J7FRJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FRJ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RUX5-1", "protein_name": "DNA polymerase delta 4, accessory subunit", "gene_name": "POLD4", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRKRLITDSYPVVKRREGPAGHSKGELALKLEEEPEPPPPSVDEAELELLRQFDLAWQYGPCTGITRLQRWHRAEQMGLAPPPEVRQVLQTHPGDPRFQCSLWHFYPL", "length": 109 }, "evidence": [ { "id": "A0A9J7FRJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FRJ0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6P6U6-1", "protein_name": "DNA polymerase delta 4, accessory subunit", "gene_name": "Pold4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRKRFITDSYPVVKKREGPPGHNKGELAPELGEDTQSLSQEETELELLRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPVEVYQVLKTHPEDSRFQCSLWHLYPL", "length": 107 }, "evidence": [ { "id": "A0A9J7FRJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FRJ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CWP8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "Pold4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRKRFITDSYPVVKKREGPPGHSKGELAPELGEDTQSLSQEETELELLRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLKAHPEDPHFQCSLWHLYPL", "length": 107 }, "evidence": [ { "id": "A0A9J7FRJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FRJ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCU8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "POLD4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRKRLITDSYPVVKRREGPAGHSKGELAPELGEEPQPRDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKTHPGDPRFQCSLWHLYPL", "length": 107 }, "evidence": [ { "id": "A0A9J7FRJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FRJ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006261", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"A0A9J7FS40_CRIGR", "mass": { "chemical_mass": 51345.0, "monoisotopic_mass": 51345.0 }, "refseq": { "ac": "XP_016835216", "name": "ATPase PAAT isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835216" }, "gene_names": [ { "name": "C3H10orf88", "type": "recommended", "evidence": [ { "id": "A0A9J7FS40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40" } ] }, { "name": "C3H10orf88", "type": "synonym", "evidence": [ { "id": "XP_016835216", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835216" } ] } ], "protein_names": [ { "name": "ATPase PAAT isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016835216", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835216" }, { "id": "A0A9J7FS40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614900.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835216", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835216" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C3H10orf88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40", "locus": {} } ], "crossref": [ { "id": "A0A9J7FS40", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FS40", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765951", "url": "https://www.ncbi.nlm.nih.gov/gene/100765951", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765951", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765951", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMLQNVC", "url": "https://omabrowser.org/oma/group/PMLQNVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FS40", "url": "https://www.orthodb.org/?gene=A0A9J7FS40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I5V0", "url": "https://www.orthodb.org/?gene=G3I5V0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14787", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14787", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14787:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14787:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14958", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14958", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835216", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835216", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FS40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I5V0", "url": "https://www.uniprot.org/uniprotkb/G3I5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I5V0-1", "url": "https://www.uniprot.org/uniprotkb/G3I5V0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METAIEDPGLDHGPTLTSSWVAACGSLTQSLLTRIGPGAQDLNFEQLLAPPALGCAGPGPGDNHAAEKPGGAREASERGQPGSDLVSLKNNLSPRDENPCFLYLKCGPNGGEEILSVGILSSARNMEVYLGEEYCGTSRGKNVCTALDDSEHEKILLYKKFLKLESPTHACKIKLLSFGEKQCVLISKVVVHVRPRSANPSPSSSALGSRIDLDSIQTIMESMGSKLSPGAQQLMNMIRFQQQNRLPIGDQLQSVLGTTGHKHLIALQSSPSSGVVDKASSTPFPFRTGLTPSAITENLKALIDKGTQPPGEGNTTNHDECHLVPQNHSLLENDLKNAVSSFLPKKASGNSNVPNSELLPFLQNLCSQVNHLRVGHNARWQENISKPRESIVGVSMEEQPICSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLQNPNSPPPGIPLRHYDSRERLSNGER", "length": 472, "header": "tr|A0A9J7FS40-1|A0A9J7FS40_CRIGR Isoform 1 of ATPase PAAT isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H10orf88 PE=4 SV=1 CANONICAL=A0A9J7FS40-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FS40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40/entry#A0A9J7FS40-1", "sequence": { "sequence": "METAIEDPGLDHGPTLTSSWVAACGSLTQSLLTRIGPGAQDLNFEQLLAPPALGCAGPGPGDNHAAEKPGGAREASERGQPGSDLVSLKNNLSPRDENPCFLYLKCGPNGGEEILSVGILSSARNMEVYLGEEYCGTSRGKNVCTALDDSEHEKILLYKKFLKLESPTHACKIKLLSFGEKQCVLISKVVVHVRPRSANPSPSSSALGSRIDLDSIQTIMESMGSKLSPGAQQLMNMIRFQQQNRLPIGDQLQSVLGTTGHKHLIALQSSPSSGVVDKASSTPFPFRTGLTPSAITENLKALIDKGTQPPGEGNTTNHDECHLVPQNHSLLENDLKNAVSSFLPKKASGNSNVPNSELLPFLQNLCSQVNHLRVGHNARWQENISKPRESIVGVSMEEQPICSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLQNPNSPPPGIPLRHYDSRERLSNGER", "length": 472, "header": "tr|A0A9J7FS40-1|A0A9J7FS40_CRIGR Isoform 1 of ATPase PAAT isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H10orf88 PE=4 SV=1 CANONICAL=A0A9J7FS40-1" }, "locus": {} }, { "isoform_ac": "G3I5V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS40/entry#G3I5V0-1", "sequence": { "sequence": "METAIEDPGLDHGPTLTSSWVAACGSLTQSLLTRIGPGAQDLNFEQLLAPPALGSDLVSLKNNLSPRDENPCFLYLKCGPNGGEEILSVGILSSARNMEVYLGEEYCGTSRGKNVCTALDDSEHEKILLYKKFLKLESPTHACKIKLLSFGEKQCVLISKVVVHVRPRSANPSPSSSALGSRIDLDSIQTIMESMGSKLSPGAQQLMNMIRFQQQNRLPIGDQLQSVLGTTGHKHLIALQSSPSSGVVDKASSTPFPFRTGLTPSAITENLKALIDKGTQPPGEGNTTNHDECHLVPQNHSLLENDLKNAVSSFLPKKASGNSNVPNSELLPFLQNLCSQVNHLRVGHNARWQENISKPRESIVGVSMEEQPICSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLQNPNSPPPGIPLRHYDSRERLSNGER", "length": 444, "header": "tr|G3I5V0-1|A0A9J7FS40_CRIGR Computationally mapped isoform of ATPase PAAT isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H10orf88 PE=4 SV=1 CANONICAL=A0A9J7FS40-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5V0", "url": "https://www.uniprot.org/uniprotkb/G3I5V0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5V0", "url": "https://www.uniprot.org/uniprotkb/G3I5V0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765951", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765951", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X9X0-1", "protein_name": "Chromosome 10 open reading frame 88", "gene_name": "C10orf88", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASGGALGPAPDPPGVAVGCSWPCVPPDGLARALCLRRGAGRDEASGEAVAVERRAGGGDAPCVLQLECRPGAERVAAVGVVSEARHMEVYVGEEYCGTGRGVSAGVLQPPGQTETVTLYEKYLKLECPATSCRIKLLSIGEKQRVLISKIIVQVNTVSAKLATDFPSLGSSIDLDRVQTIMESMGSKLSPGAQQLMDMVRYQQKNSLPLGDRLSWMLGKNSDFGNEHPVDGLHGAGIQTSLHQSVSESPSVRNPLTSETGCENLNLDLEAQVPDREDASNSIELNTQQNTVDLRNDFKAMGSLLMQEQTDRIRNIAAPQMLLPFLQNLCSQVNHLRLKDGERHLDKNVVTKEEGIQTVGIEQQPICSYLEKIISKNMDLMEKKLTDYIDRQIQALQAHIDDKMVLLADLVQNSKQNKISQAHYDSNEGFSNGER", "length": 435 }, "evidence": [ { "id": "A0A9J7FS40", "url": "https://omabrowser.org/oma/group/A0A9J7FS40/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B8B2-1", "protein_name": "Protein associated with ABC transporters", "gene_name": "LOC510536", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METETVHGPLTRRPTLVSSWDAECGALAQSLRLIRAGLGARDADWEELLAPPASGQDQVTLKRNLNNQDENPCFLYLRCDPHGGEEIVSIGILSSARNMEVYLGEEYCGTSRGKNVCNVLDNSEHEKITFYKKYLKLESPTHACKIKLLSFGEKNCVFISKVVVHVRQVSAHSSAGSPTLGSRIDLERVQTIMESMGSKLSPGAQQLMNMVRFQQQNCVAIGEQLQSILGNTGHKHVMGLPSSSTPGAFDKSSCTPFPFRTGLTSGNVTDDSEATTEKSLQPAGGGSMSSLQECKIGPQSRSILENDLKNAVSSFLSKKAGDSSHIPNSELLPFLQNLCGQVSHLRVGPGTKWQDSITKPGGGAGGVTLEEQSICSYLEKILSKNLELMEKKLTDYVDQRIYKLQEHIDNKMALLMDLLQRPNSPPSGMPLRHYDSGEGLSNGER", "length": 445 }, "evidence": [ { "id": "A0A9J7FS40", "url": "https://omabrowser.org/oma/group/A0A9J7FS40/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "I3LBP2-1", "protein_name": "Protein associated with ABC transporters", "gene_name": "LOC100154423", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METGAVDAPLTRRPTLAASWDAACGALAQSLRLARAGLGARDADWEQLLAPPATGQDLVILKRSLHRQGENPCFLHVRCDPRGGEEMVSVGVLSSARNMEVYLGEEYCGTSRGKSVCNVLDNSEQEKITLYKTYLKLESSTRACKIKLLSFGEKQCVFISRVVVHVRPVSPASPASCPPLGPRIDLERVQTILESMGSKLSPGAQQLMSLVRFQQQQMCIPIGEPPQSPRGSAGSTPGVGARASSSSGASAKSTSTPFPFRTGLTSGNRTEDVQAHPAQRTQPAAGGPVTRLQECPMGPQNQSLLENELKAAVSSFSPKRAGDSAPVANSELPPFLQNLCRQVSHLRLGPLSKWQESITRPGEGPAGLPMDEQSICSSLEKMLSKNMELMEKKLTDYIDQRIYKLQEHLDNKIALLVDLLQNPNSPPSGMPLRHYDSGERLSNGER", "length": 446 }, "evidence": [ { "id": "A0A9J7FS40", "url": "https://omabrowser.org/oma/group/A0A9J7FS40/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q9D2Q3-1", "protein_name": "ATPase PAAT", "gene_name": "Paat", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METAIEDAGLDRGPTLTSSWDAACGALTQSLFLTRTGPRAQDLDFEQLLEPPAPSQDPVSLKSSLSPRDENPCFIYLNCGPNGGEEILSVGVLSSARNMEVYLGEEYCGTSRGKTACTVLDDSEHEKILLYKKYLKLDSPTHACKIKLLSFGEKQCVLVSKVVVHLRPRSADPSPRSAALGSRIDLDNIQTIMESMGSRLSPGAQQLMSMIRFQQQNRLPIGDQLQSVLGSAGHKHLMALQSSPSPAVLDKASSTPFPFRTGLTPSAITENLKALIDKSAQPSGEGNTTNHDEGHLMPQNHSLESDLKNAVSSFLPKKASGSSSVPSSELLPFLQNLCSQVNHLRVGHNARWQENISKPREGMVGVPMEEQPVCSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLRGPNSPPPGMPLRHYDSRERLSNGER", "length": 444 }, "evidence": [ { "id": "A0A9J7FS40", "url": "https://omabrowser.org/oma/group/A0A9J7FS40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H8K7-1", "protein_name": "ATPase PAAT", "gene_name": "PAAT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METRTEDGGLTRRPTLASSWDVAGGALTHSLLLTRAGLGPGDFDWEELLAPPAPGQDLVILKRNHNNKDENPCFLYLRCGPDGGEEIASIGILSSARNMEVYLGEEYCGTSRGKNVCTVLDDSEHEKIILYKKNLKLESSTHACKIKLLSFGERQCVFISKVVVHMRSVFANSSTSSPALGSRIDLDKVQTIMESMGSKLSPGAQQLMDMVRCQQRNCIPIGEQLQSVLGNSGYKHMIGLQSSSTLGTLNKSSSTPFPFRTGLTSGNVTENLQTYIDKSTQLPGGENSTKLDECKVMPQNHSFLENDLKNAMASFLPKKVSDNSNIPNSELLPFLQNLCSQVNHLHVGNKTECQENITKHGERILGVGMEEQSICSYLEKILSKNMELMEKKLMDYIDQRIHELQEHIDDKIALLLDLLQNPNSPPTGIPLRHYDSGERLSNGER", "length": 445 }, "evidence": [ { "id": "A0A9J7FS40", "url": "https://omabrowser.org/oma/group/A0A9J7FS40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 314, "end_pos": 316 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FKV7-1", "uniprot_ac": "A0A9J7FKV7", "uniprot_id": "A0A9J7FKV7_CRIGR", "mass": { "chemical_mass": 40958.0, "monoisotopic_mass": 40958.0 }, "refseq": { "ac": "XP_007649699", "name": "WW domain binding protein 1-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649699" }, "gene_names": [ { "name": "Wbp1l", "type": "recommended", "evidence": [ { "id": "A0A9J7FKV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7" } ] }, { "name": "Wbp1l", "type": "synonym", "evidence": [ { "id": "XP_007649699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649699" } ] } ], "protein_names": [ { "name": "WW domain binding protein 1-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007649699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649699" }, { "id": "A0A9J7FKV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614988.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649699" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wbp1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FKV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FKV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758219", "url": "https://www.ncbi.nlm.nih.gov/gene/100758219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758219", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758219", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FKV7", "url": "https://www.orthodb.org/?gene=A0A9J7FKV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K6G8", "url": "https://www.orthodb.org/?gene=A0A9J7K6G8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I760", "url": "https://www.orthodb.org/?gene=G3I760", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16209", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16209", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16209:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16209:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31397", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31397", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31397:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31397:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16088", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6G8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6G8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6G8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I760", "url": "https://www.uniprot.org/uniprotkb/G3I760", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I760-1", "url": "https://www.uniprot.org/uniprotkb/G3I760-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRALWVRKPVWVPTMKATSVTQDTAVDSLSAATTTMNSGVSPCPGGSWHPRVPVTASAPWETAGWPAFSDSLGDSVGFWLVWTVIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYTALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGPAGGTPPGADPPQGSQGAQSSPLSGSSRSSTRPPSVTDPQPSEVPADRAATKAPGMESSGSVASHGELAPGAFLNRDSECKEELLKDSSLEHGGVPPDSKDKTPGRHRRFTGDSGIEVCVCNRGHHDDGLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEEQARELGHPHLPRPPACLLLNTINEQDPPNSQRSSSPS", "length": 378, "header": "tr|A0A9J7FKV7-1|A0A9J7FKV7_CRIGR Isoform 1 of WW domain binding protein 1-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Wbp1l PE=4 SV=1 CANONICAL=A0A9J7FKV7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7/entry#A0A9J7FKV7-1", "sequence": { "sequence": "MRRALWVRKPVWVPTMKATSVTQDTAVDSLSAATTTMNSGVSPCPGGSWHPRVPVTASAPWETAGWPAFSDSLGDSVGFWLVWTVIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYTALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGPAGGTPPGADPPQGSQGAQSSPLSGSSRSSTRPPSVTDPQPSEVPADRAATKAPGMESSGSVASHGELAPGAFLNRDSECKEELLKDSSLEHGGVPPDSKDKTPGRHRRFTGDSGIEVCVCNRGHHDDGLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEEQARELGHPHLPRPPACLLLNTINEQDPPNSQRSSSPS", "length": 378, "header": "tr|A0A9J7FKV7-1|A0A9J7FKV7_CRIGR Isoform 1 of WW domain binding protein 1-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Wbp1l PE=4 SV=1 CANONICAL=A0A9J7FKV7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7/entry#A0A9J7JKM9-1", "sequence": { "sequence": "MKATSVTQDTAVDSLSAATTTMNSGVSPCPGGSWHPRVPVTASAPWETAGWPAFSDSLGDSVGFWLVWTVIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYTALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGPAGGTPPGADPPQGSQGAQSSPLSGSSRSSTRPPSVTDPQPSEVPADRAATKAPGMESSGSVASHGELAPGAFLNRDSECKEELLKDSSLEHGGVPPDSKDKTPGRHRRFTGDSGIEVCVCNRGHHDDGLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEEQARELGHPHLPRPPACLLLNTINEQDPPNSQRSSSPS", "length": 363, "header": "tr|A0A9J7JKM9-1|A0A9J7JKM9_CRIGR Computationally mapped isoform of WW domain binding protein 1-like isoform X3 OS=Cricetulus griseus OX=10029 GN=Wbp1l PE=4 SV=1 CANONICAL=A0A9J7FKV7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7/entry#A0A9J7K6G8-1", "sequence": { "sequence": "MQRRRLLGGMALLLLQALPSPLSVRAEPPQGKETCVGANNESYICDTGHCCGQSQCCNYYYELWWTRRRPAERSPVETMAAGAPDPQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLRKMAIITTHLQYQQEAIQKNVEQSPDLQDQLSHLLK", "length": 183, "header": "tr|A0A9J7K6G8-1|A0A9J7K6G8_CRIGR Computationally mapped isoform of BLOC-1-related complex subunit 7 OS=Cricetulus griseus OX=10029 GN=Wbp1l PE=3 SV=1 CANONICAL=A0A9J7FKV7-1" }, "locus": {} }, { "isoform_ac": "G3I760-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV7/entry#G3I760-1", "sequence": { "sequence": "MQRRRLLGGMALLLLQALPSPLSVRAEPPQGKETCVGANNESYICDTGHCCGQSQCCNYYYELWWFWLVWTVIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYTALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGPAGGTPPGADPPQGSQGAQSSPLSGSSRSSTRPPSVTDPQPSEVPADRAATKAPGMESSGSVASHGELAPGAFLNRDSECKEELLKDSSLEHGGVPPDSKDKTPGRHRRFTGDSGIEVCVCNRGHHDDGLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEEQARELGHPHLPRPPACLLLNTINEQDPPNSQRSSSPS", "length": 365, "header": "tr|G3I760-1|A0A9J7FKV7_CRIGR Computationally mapped isoform of WW domain binding protein 1-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Wbp1l PE=4 SV=1 CANONICAL=A0A9J7FKV7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 151, "start_aa": "Thr", "end_pos": 151, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr151", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 177, "start_aa": "Thr", "end_pos": 177, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I760", "url": "https://www.uniprot.org/uniprotkb/G3I760" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7FTD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FTD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD0" }, { "id": "PF05347", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05347" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Complex 1 LYR protein", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 105, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FVR3-1", "uniprot_ac": "A0A9J7FVR3", "uniprot_id": "A0A9J7FVR3_CRIGR", "mass": { "chemical_mass": 57529.0, "monoisotopic_mass": 57529.0 }, "refseq": { "ac": "XP_016836160", "name": "vacuolar fusion protein CCZ1 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836160" }, "gene_names": [ { "name": "LOC100769148", "type": "recommended", "evidence": [ { "id": "A0A9J7FVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" } ] }, { "name": "LOC100769148", "type": "synonym", "evidence": [ { "id": "XP_016836160", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836160" } ] } ], "protein_names": [ { "name": "Vacuolar fusion protein CCZ1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3/entry#names_and_taxonomy" } ] }, { "name": "vacuolar fusion protein CCZ1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016836160", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836160" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615470.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016836160", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836160" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769148", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVR3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769148", "url": "https://www.ncbi.nlm.nih.gov/gene/100769148", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043988", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043988", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769148", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769148", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCQALHT", "url": "https://omabrowser.org/oma/group/DCQALHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FVR3", "url": "https://www.orthodb.org/?gene=A0A9J7FVR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FVV6", "url": "https://www.orthodb.org/?gene=A0A9J7FVV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IC82", "url": "https://www.orthodb.org/?gene=G3IC82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13056", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13056", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13056:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13056:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19032", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19032", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016836160", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836160", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IC82", "url": "https://www.uniprot.org/uniprotkb/G3IC82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IC82-1", "url": "https://www.uniprot.org/uniprotkb/G3IC82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAGTGTWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMIMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLQKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHMEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTQLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRRAVYMKLSHLKLSYRADEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 495, "header": "tr|A0A9J7FVR3-1|A0A9J7FVR3_CRIGR Isoform 1 of Vacuolar fusion protein CCZ1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769148 PE=3 SV=1 CANONICAL=A0A9J7FVR3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3/entry#A0A9J7FVR3-1", "sequence": { "sequence": "MAAAAAGTGTWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMIMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLQKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHMEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTQLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRRAVYMKLSHLKLSYRADEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 495, "header": "tr|A0A9J7FVR3-1|A0A9J7FVR3_CRIGR Isoform 1 of Vacuolar fusion protein CCZ1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769148 PE=3 SV=1 CANONICAL=A0A9J7FVR3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3/entry#A0A9J7FVV6-1", "sequence": { "sequence": "MIMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLQKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHMEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTQLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRRAVYMKLSHLKLSYRADEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 396, "header": "tr|A0A9J7FVV6-1|A0A9J7FVV6_CRIGR Computationally mapped isoform of Vacuolar fusion protein CCZ1 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100769148 PE=4 SV=1 CANONICAL=A0A9J7FVR3-1" }, "locus": {} }, { "isoform_ac": "G3IC82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3/entry#G3IC82-1", "sequence": { "sequence": "MAAAAAGTGTWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMIMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLQKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHMEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTQLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRADEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 480, "header": "tr|G3IC82-1|A0A9J7FVR3_CRIGR Computationally mapped isoform of Vacuolar fusion protein CCZ1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769148 PE=3 SV=1 CANONICAL=A0A9J7FVR3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IC82", "url": "https://www.uniprot.org/uniprotkb/G3IC82" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IC82", "url": "https://www.uniprot.org/uniprotkb/G3IC82" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769148", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769148", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A140UHX9-1", "protein_name": "CCZ1 homolog, vacuolar protein trafficking and biogenesis associated", "gene_name": "Ccz1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAAAGTGTWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPVRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTQLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRADEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 480 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C0Z274-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog B", "gene_name": "CCZ1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGMASMSSGTESLRLCVFDLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSHVFYEAEPDIWMVMIVEKNKEIEAVWRIDALRRVLKEVHSLFVMFQGSIRALLEKEPTGGLVRSHLYPFITDYLNDLFVGKKQQLPSFRDTLKERGTVQMLTLARDAALEVQSLVGVLDSCAGTVRCHSVILFHDLLVSTTLSPDDTVDLFAFSVMRLTTNALSSGTSSWSYLRKGSGSPQISSRSTTVPPLGSGGTLPSGNGSSTGRVIRPLQHDKWSKGKDGFLVTDIWGLDATPTILIQKTQESFYLLTYQYKSLTLVLLVPIAAIVNGELDISFVKQQVIENASTKILKVEEKLSKGWGGENAYHVSGYRYLLVDNDMEVSRASPPGKVATLAKESLLALNKLREEVDTEKNRSKQEKDMEICIRAKNNTWVIARLNRGKELYMALEKASETLLDATDSVQRFSNRYCSGAFPMD", "length": 497 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "I3L7N6-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "CCZ1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAAATAGAGAGAGAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLIVYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQFKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDEEVIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 482 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P86791-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "CCZ1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAAGAGSGPWAAQEKQFPPALLSFFIYNPRFGPREGQEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVIEYQEEELLDKVYSSVLRQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLNIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPDAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASVHPTLDFCRRLDSIVGPQLTVLASDICEQFNINKRMSGSEKEPQFKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEIIVKAMSDYWVVGKKSDRRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 482 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0VD30-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "CCZ1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAASGAGAGAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLIVYKAMSAAVCFMIDASIQPTLDFCRRLDSIVGPQLTVLASDICEQFNINKRMSGSEKEPQFKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEIIVKAMSDYWVVGKKSDQRELYVILNQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 480 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54IQ5-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVPIVETSLHYFVIYCSKLGQKEGTEHEKILFFYPPTINIGEQTNSVGISEAYVLFTKQFSPGQPCEFIHTKKSTLALLHPEEDIWMVLSVYNPTGITGKDNKREYIEDEVDDIILMKTIQQIYQTWQTFNGSIMSLASKTSYDNVRKRLESFVKPYIQQIQFDQLDLFTSLDGIKFLPLNKNVYLTIFGYINSVDLHFQSTLSSFRFGLVLYKDNLILSSLEQNETRILYNYLINMVKVGPDINSSNSMIVKNNSNNIPIWQTKGVRTGFMIQKDSLPMVWLGGKPQAMIVYEQKDTFLLFLIDPSDLPQLPFEDLSASLVQNFEFVNLTLEQHYAKKANFDEQYKYIYFNQMNLAIRSPIKPKGPELNKETMKLLNEIHADFEGGLSSEIIVKTQQDRWIVAKKIDFREFYIMFDNKNSSILEINEEVKNATTKFFKFLFTD", "length": 445 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8C1Y8-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "Ccz1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAAGPGAWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPVRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTPLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRADEDEEIIVKAMSDYWVVGKKSDQRELYVILSQKNANLIEVNEEVKKLCATQFNNIFFLD", "length": 480 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VZL5-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "Ccz1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDVGLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEVRLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPDKRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQNFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEASSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVTLDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSLARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLPQGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQYYVILCNSKATLLDVTQEARRIFEQELTDDVFFDK", "length": 485 }, "evidence": [ { "id": "A0A9J7FVR3", "url": "https://omabrowser.org/oma/group/A0A9J7FVR3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Mon1-Ccz1 complex", "id": "GO:0035658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035658", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" }, { "id": "PF19032", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19032" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCZ1/INTU second Longin", "eco_id": "ECO_0000259", "start_pos": 218, "end_pos": 344, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" }, { "id": "PF19033", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCZ1/INTU/HPS4 third Longin", "eco_id": "ECO_0000259", "start_pos": 370, "end_pos": 483, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR3" }, { "id": "PF19031", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19031" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCZ1/INTU/HSP4 first Longin", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 148, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIC6-1", "uniprot_ac": "A0A9J7FIC6", "uniprot_id": "A0A9J7FIC6_CRIGR", "mass": { "chemical_mass": 21778.0, "monoisotopic_mass": 21778.0 }, "refseq": { "ac": "XP_003514360", "name": "cold shock domain-containing protein C2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514360" }, "gene_names": [ { "name": "Csdc2", "type": "recommended", "evidence": [ { "id": "A0A9J7FIC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" } ] }, { "name": "Csdc2", "type": "synonym", "evidence": [ { "id": "XP_003514360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514360" } ] } ], "protein_names": [ { "name": "Cold shock domain-containing protein C2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FIC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6/entry#names_and_taxonomy" } ] }, { "name": "cold shock domain-containing protein C2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003514360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514360" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616508.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003514360.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514360" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Csdc2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FIC6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FIC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759782", "url": "https://www.ncbi.nlm.nih.gov/gene/100759782", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759782", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759782", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QFSRAQG", "url": "https://omabrowser.org/oma/group/QFSRAQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FIC6", "url": "https://www.orthodb.org/?gene=A0A9J7FIC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3II50", "url": "https://www.orthodb.org/?gene=G3II50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3II50", "url": "https://www.uniprot.org/uniprotkb/G3II50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3II50-1", "url": "https://www.uniprot.org/uniprotkb/G3II50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEDFETTTESIPGEATEQGKAGPCPKGRQSPSPAPVSQSPPGSRAGATMTSEPTSPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGISPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 203, "header": "tr|A0A9J7FIC6-1|A0A9J7FIC6_CRIGR Isoform 1 of Cold shock domain-containing protein C2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Csdc2 PE=4 SV=1 CANONICAL=A0A9J7FIC6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6/entry#A0A9J7FIC6-1", "sequence": { "sequence": "MPEDFETTTESIPGEATEQGKAGPCPKGRQSPSPAPVSQSPPGSRAGATMTSEPTSPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGISPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 203, "header": "tr|A0A9J7FIC6-1|A0A9J7FIC6_CRIGR Isoform 1 of Cold shock domain-containing protein C2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Csdc2 PE=4 SV=1 CANONICAL=A0A9J7FIC6-1" }, "locus": {} }, { "isoform_ac": "G3II50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6/entry#G3II50-1", "sequence": { "sequence": "MTSEPTSPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGISPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 154, "header": "tr|G3II50-1|A0A9J7FIC6_CRIGR Computationally mapped isoform of Cold shock domain-containing protein C2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Csdc2 PE=4 SV=1 CANONICAL=A0A9J7FIC6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3II50", "url": "https://www.uniprot.org/uniprotkb/G3II50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3II50", "url": "https://www.uniprot.org/uniprotkb/G3II50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759782", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759782", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P545-1", "protein_name": "Cold shock domain containing C2", "gene_name": "CSDC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSEPGAPPAVPPLHSPKSPVWPTFPFQREGSRVWERGNLLLRDLPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETWSGQIIGS", "length": 153 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A4X1W4K0-1", "protein_name": "Cold shock domain containing C2", "gene_name": "CSDC2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTSEPTPPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVSSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 153 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0AAA9T513-1", "protein_name": "Cold shock domain containing C2", "gene_name": "CSDC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQTEPVAGEAAEQGQAGPCPSGRPSPSPAPAPGSPPGSPAGPAMTSEPTPPAVVPPLHSPKSPVWPTFPFHREGSRVWERGSVSSRDLPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 196 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q63430-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "Csdc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSESTSPPVVPPLHSPKSPVWPTFPFHRESSRIWERGGGVSPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 154 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91YQ3-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "Csdc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSESTLPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGIAPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 154 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y534-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "CSDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 153 }, "evidence": [ { "id": "A0A9J7FIC6", "url": "https://omabrowser.org/oma/group/A0A9J7FIC6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of mRNA stability", "id": "GO:0043488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043488", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FIC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC6" }, { "id": "PS51857", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CSD", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 184, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FV46-1", "uniprot_ac": "A0A9J7FV46", "uniprot_id": "A0A9J7FV46_CRIGR", "mass": { "chemical_mass": 72798.0, "monoisotopic_mass": 72798.0 }, "refseq": { "ac": "XP_016826666", "name": "serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826666" }, "gene_names": [ { "name": "Ppp2r1b", "type": "recommended", "evidence": [ { "id": "A0A9J7FV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ] }, { "name": "Ppp2r1b", "type": "synonym", "evidence": [ { "id": "XP_016826666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826666" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3", "type": "synonym", "evidence": [ { "id": "XP_016826666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826666" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016826666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826666" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp2r1b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46", "locus": {} } ], "crossref": [ { "id": "A0A9J7FV46", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FV46", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771272", "url": "https://www.ncbi.nlm.nih.gov/gene/100771272", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054573", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054573", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771272", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771272", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NRVEAMQ", "url": "https://omabrowser.org/oma/group/NRVEAMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FV46", "url": "https://www.orthodb.org/?gene=A0A9J7FV46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H2G5", "url": "https://www.orthodb.org/?gene=G3H2G5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016826666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H2G5", "url": "https://www.uniprot.org/uniprotkb/G3H2G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H2G5-1", "url": "https://www.uniprot.org/uniprotkb/G3H2G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAAGPGAGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKITLNDLIPAFQSLLKDCEAEVRAAAAHKVKELCENLPTEGRETIIMTQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPRVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVVAQRLRKLDFPVKDSEEPSIPGVDKNLFLRPRVPGENTGKFLPLMSRHREAERLQWLPRRQ", "length": 658, "header": "tr|A0A9J7FV46-1|A0A9J7FV46_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3 OS=Cricetulus griseus OX=10029 GN=Ppp2r1b PE=3 SV=1 CANONICAL=A0A9J7FV46-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46/entry#A0A9J7FV46-1", "sequence": { "sequence": "MAGAAGPGAGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKITLNDLIPAFQSLLKDCEAEVRAAAAHKVKELCENLPTEGRETIIMTQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPRVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVVAQRLRKLDFPVKDSEEPSIPGVDKNLFLRPRVPGENTGKFLPLMSRHREAERLQWLPRRQ", "length": 658, "header": "tr|A0A9J7FV46-1|A0A9J7FV46_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3 OS=Cricetulus griseus OX=10029 GN=Ppp2r1b PE=3 SV=1 CANONICAL=A0A9J7FV46-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46/entry#A0A9J7GVB4-1", "sequence": { "sequence": "MAGAAGPGAGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKITLNDLIPAFQSLLKDCEAEVRAAAAHKVKELCENLPTEGRETIIMTQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPRVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISGTSMSVACKY", "length": 606, "header": "tr|A0A9J7GVB4-1|A0A9J7GVB4_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp2r1b PE=3 SV=1 CANONICAL=A0A9J7FV46-1" }, "locus": {} }, { "isoform_ac": "G3H2G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46/entry#G3H2G5-1", "sequence": { "sequence": "MAGAAGPGAGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKITLNDLIPAFQSLLKDCEAEVRAAAAHKVKELCENLPTEGRETIIMTQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPRVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVLALA", "length": 601, "header": "tr|G3H2G5-1|A0A9J7FV46_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3 OS=Cricetulus griseus OX=10029 GN=Ppp2r1b PE=3 SV=1 CANONICAL=A0A9J7FV46-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H2G5", "url": "https://www.uniprot.org/uniprotkb/G3H2G5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H2G5", "url": "https://www.uniprot.org/uniprotkb/G3H2G5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771272", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771272", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PMV7-1", "protein_name": "3.1.3.16", "gene_name": "ppp2r1ba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGADSDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTMLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRKISHEHSPVDLEVHFEPLVKRLASGDWFTSRTSACGLFSVCYPRVSSTVKAEIRQHFRTLCSDDTPMVRRAAASKLGEFAKVLELEYVKSDIISLFTALASDEQDSVRLLAVEAGVSIATLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFSDLQKAVGPEITKNDLVPAFQNLLKDCEAEVRAAAANKVKEFCENLPEDSRETIIMTHILPCVKELVSDTNQHVKSALASVIMGLSTILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATCNLMKLVEKFGAEWAQNTIVPKVLGMANDPNYLHRMTTLFCINALSEVCGQEITTKHMLPVVLKMSNDQVANVRFNVAKSLQKIGPVLDSSCLQTEVKPVLEKLASDQDMDVKYFAQEAISVLSLA", "length": 589 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P30154-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform", "gene_name": "PPP2R1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGASELGTGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRDKAVESLRQISQEHTPVALEAYFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSIAQLLSQDDLETLVMPTLRQAAEDKSWRVRYMVADRFSELQKAMGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKVKELGENLPIEDRETIIMNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPDVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVLALA", "length": 601 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P31383-1", "protein_name": "Protein phosphatase PP2A regulatory subunit A", "gene_name": "TPD3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSGARSTTAGAVPSAATTSTTSTTSNSKDSDSNESLYPLALLMDELKHDDIANRVEAMKKLDTIALALGPERTRNELIPFLTEVAQDDEDEVFAVLAEQLGKFVPYIGGPQYATILLPVLEILASAEETLVREKAVDSLNNVAQELSQEQLFSDFVPLIEHLATADWFSSKVSACGLFKSVIVRIKDDSLRKNILALYLQLAQDDTPMVKRAVGKNLPILIDLLTQNLGLSTDEDWDYISNIFQKIINDNQDSVKFLAVDCLISILKFFNAKGDESHTQDLLNSAVKLIGDEAWRVRYMAADRFSDLASQFSSNQAYIDELVQPFLNLCEDNEGDVREAVAKQVSGFAKFLNDPSIILNKILPAVQNLSMDESETVRSALASKITNIVLLLNKDQVINNFLPILLNMLRDEFPDVRLNIIASLKVVNDVIGIELLSDSLLPAITELAKDVNWRVRMAIIEYIPILAEQLGMQFFDQQLSDLCLSWLWDTVYSIREAAVNNLKRLTEIFGSDWCRDEIISRLLKFDLQLLENFVSRFTILSALTTLVPVVSLDVVTEQLLPFISHLADDGVPNIRFNVAKSYAVIVKVLIKDEAKYDALIKNTILPSLQTLCQDEDVDVKYFAKKSLAECQELLKN", "length": 635 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q38950-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform", "gene_name": "PP2AA2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS", "length": 587 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q4QQT4-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform", "gene_name": "Ppp2r1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGAAGPGTVPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKVRELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVLALA", "length": 601 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54QR9-1", "protein_name": "Protein phosphatase 2A scaffold subunit", "gene_name": "pppA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALLGSMLTNEENIQFILPTIKASSLDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEVRTEASLRIADVCSLLTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKFYASQALQLC", "length": 584 }, "evidence": [ { "id": "A0A9J7FV46", "url": "https://omabrowser.org/oma/group/A0A9J7FV46/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ], "pmid": "" }, { "name": "protein phosphatase type 2A complex", "id": "GO:0000159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000159", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" }, { "id": "PF22956", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22956" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PIK3R4-like middle", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 282, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV46" }, { "id": "PF22646", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22646" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like HEAT repeat", "eco_id": "ECO_0000259", "start_pos": 288, "end_pos": 369, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FJ98-1", "uniprot_ac": "A0A9J7FJ98", "uniprot_id": "A0A9J7FJ98_CRIGR", "mass": { "chemical_mass": 93609.0, "monoisotopic_mass": 93609.0 }, "refseq": { "ac": "XP_027258880", "name": "choline transporter-like protein 1 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258880" }, "gene_names": [ { "name": "Slc44a1", "type": "recommended", "evidence": [ { "id": "A0A9J7FJ98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98" } ] }, { "name": "Slc44a1", "type": "synonym", "evidence": [ { "id": "XP_027258880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258880" } ] } ], "protein_names": [ { "name": "Choline transporter-like protein 1 isoform X7", "type": "synonym", "evidence": [ { "id": "A0A9J7FJ98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#names_and_taxonomy" } ] }, { "name": "choline transporter-like protein 1 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_027258880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258880" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258880" } ] }, { "annotation": "Choline transporter.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI6#function" }, { "database": "UniProtKB", "id": "RU368066", "url": "https://www.uniprot.org/uniprotkb/RU368066#function" }, { "database": "UniProtKB", "id": "A0A9J7FH34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH34#function" }, { "database": "UniProtKB", "id": "A0A9J7FJ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ11#function" }, { "database": "UniProtKB", "id": "A0A9J7FKG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKG4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc44a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJ98", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJ98", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766177", "url": "https://www.ncbi.nlm.nih.gov/gene/100766177", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766177", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766177", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFI6", "url": "https://www.orthodb.org/?gene=A0A9J7FFI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FJ98", "url": "https://www.orthodb.org/?gene=A0A9J7FJ98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKG4", "url": "https://www.orthodb.org/?gene=A0A9J7FKG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12385", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12385", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12385:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12385:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258880", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDARGGAEEEAAAARERERERDWARVVGGGGQGEVPPPPPAPFRWGAAAAAGAEPEPRSRRRRRRTAGGCGRRLPRAAPPPDFSPPSLSLPSPPSRAGPGRALPGPPGSHAEGLRGVAARPAPPPGSSGPAMGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMVGGDEEVAALHEFHFHFFSLSVLTDCTSSGEAFVICITQDMLLFLFVCLPITWMAELLSQLRLPSVKVS", "length": 850, "header": "tr|A0A9J7FJ98-1|A0A9J7FJ98_CRIGR Isoform 1 of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#A0A9J7FFI6-1", "sequence": { "sequence": "MGAGIKLRSICTQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMVGGDEEVAALHEFHFHFFSLSVLTDCTSSGEAFVICITQDMLLFLFVCLPITWMAELLSQLRLPSVKVS", "length": 720, "header": "tr|A0A9J7FFI6-1|A0A9J7FJ98_CRIGR Computationally mapped isoform of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FH34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#A0A9J7FH34-1", "sequence": { "sequence": "MGDARGGAEEEAAAARERERERDWARVVGGGGQGEVPPPPPAPFRWGAAAAAGAEPEPRSRRRRRRTAGGCGRRLPRAAPPPDFSPPSLSLPSPPSRAGPGRALPGPPGSHAEGLRGVAARPAPPPGSSGPAMGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMLRKR", "length": 785, "header": "tr|A0A9J7FH34-1|A0A9J7FJ98_CRIGR Computationally mapped isoform of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#A0A9J7FJ11-1", "sequence": { "sequence": "MGDARGGAEEEAAAARERERERDWARVVGGGGQGEVPPPPPAPFRWGAAAAAGAEPEPRSRRRRRRTAGGCGRRLPRAAPPPDFSPPSLSLPSPPSRAGPGRALPGPPGSHAEGLRGVAARPAPPPGSSGPAMGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMASGTSSA", "length": 788, "header": "tr|A0A9J7FJ11-1|A0A9J7FJ98_CRIGR Computationally mapped isoform of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJ98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#A0A9J7FJ98-1", "sequence": { "sequence": "MGDARGGAEEEAAAARERERERDWARVVGGGGQGEVPPPPPAPFRWGAAAAAGAEPEPRSRRRRRRTAGGCGRRLPRAAPPPDFSPPSLSLPSPPSRAGPGRALPGPPGSHAEGLRGVAARPAPPPGSSGPAMGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMVGGDEEVAALHEFHFHFFSLSVLTDCTSSGEAFVICITQDMLLFLFVCLPITWMAELLSQLRLPSVKVS", "length": 850, "header": "tr|A0A9J7FJ98-1|A0A9J7FJ98_CRIGR Isoform 1 of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98/entry#A0A9J7FKG4-1", "sequence": { "sequence": "MRFRGTSHLYSQTQETSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQRNAKLEAIPNSGLDHTHRKYVFFLDPCNLDLINRKIKSIALCVATCPREELKTLSDVQKFAEINGSALCTYNIKPSEYTLSAKSAGLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAIQNEQGFVEYKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGAADARELKPMVGGDEEVAALHEFHFHFFSLSVLTDCTSSGEAFVICITQDMLLFLFVCLPITWMAELLSQLRLPSVKVS", "length": 723, "header": "tr|A0A9J7FKG4-1|A0A9J7FJ98_CRIGR Computationally mapped isoform of Choline transporter-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Slc44a1 PE=3 SV=1 CANONICAL=A0A9J7FJ98-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFI6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766177", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766177", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "choline transmembrane transporter activity", "id": "GO:0015220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015220", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 266, "end_pos": 268 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 638, "end_pos": 640 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQ60-1", "uniprot_ac": "A0A9J7FQ60", "uniprot_id": "A0A9J7FQ60_CRIGR", "mass": { "chemical_mass": 57871.0, "monoisotopic_mass": 57871.0 }, "refseq": { "ac": "XP_027263705", "name": "tripartite motif-containing protein 30A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263705" }, "gene_names": [ { "name": "LOC113830641", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" } ] }, { "name": "LOC113830641", "type": "synonym", "evidence": [ { "id": "XP_027263705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263705" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 30A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FQ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 30A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027263705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263705" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263705" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113830641", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60", "locus": {} } ], "crossref": [ { "id": "cd15822", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15822", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16591", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16591", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113830641", "url": "https://www.ncbi.nlm.nih.gov/gene/113830641", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113830641", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830641", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQ60", "url": "https://www.orthodb.org/?gene=A0A9J7FQ60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263705", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GS72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GS72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT05", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLRLKQPKMVLREKRRIFQASDLKGMLEVFHELMDAQHYWVHVTLPRVYKKNVIINVDKKQIQHQNKNTRNRRMFSIFGTYDLGVLGYPAIHSGKHYWEVDVSRSDAWLLGLNDGRCAQPQHHGLNKKPFKVMYNSVVKHCVYYQPKHGYWVIGKKNRSVYNAFENRSVTHNASVLVLSLTHPPSRVGVFLDREACTLSFYDVSNHGALIYKFCEPSFPNTVYPYFNPMESSEPMTVCGPPS", "length": 501, "header": "tr|A0A9J7FQ60-1|A0A9J7FQ60_CRIGR Isoform 1 of Tripartite motif-containing protein 30A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7FQ60-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLRLKQPKMVLREKRRIFQASDLKGMLEVFHELMDAQHYWVHVTLPRVYKKNVIINVDKKQIQHQNKNTRNRRMFSIFGTYDLGVLGYPAIHSGKHYWEVDVSRSDAWLLGLNDGRCAQPQHHGLNKKPFKVMYNSVVKHCVYYQPKHGYWVIGKKNRSVYNAFENRSVTHNASVLVLSLTHPPSRVGVFLDREACTLSFYDVSNHGALIYKFCEPSFPNTVYPYFNPMESSEPMTVCGPPS", "length": 501, "header": "tr|A0A9J7FQ60-1|A0A9J7FQ60_CRIGR Isoform 1 of Tripartite motif-containing protein 30A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7FQC1-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTSSCDPASSLQEKCYH", "length": 271, "header": "tr|A0A9J7FQC1-1|A0A9J7FQC1_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 30A isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7FQE3-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRAHGCPTLLGSCDPASSLQEKCYH", "length": 280, "header": "tr|A0A9J7FQE3-1|A0A9J7FQE3_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 30A isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GS72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7GS72-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLRLKQPKMVLREKRRIFQASDLKGMLEVFHEEIDFNVLIPLLACNGVNFHDFRAHGCPTLLGSCDPASSLQEKCYH", "length": 336, "header": "tr|A0A9J7GS72-1|A0A9J7GS72_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 30A isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GT05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7GT05-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRIAYWDNSWDLCVSPGDGKIQSSFVVAFSIFTNRLESVGTAVPCEPHTSEDWKAVPLYVKSHIQAVDIRLILNMLLLIGCSIFAKIVILKKNLKIQKLERVTILTKESDLKIKTAQNGPKRKEKDLPSFRSERHAGSVS", "length": 395, "header": "tr|A0A9J7GT05-1|A0A9J7GT05_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 12A isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7GTS0-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRIAYWDNSWDLCVSPGDGKIQSSFVVAFSIFTNRLESVGTAVPCEPHTSEDWKAVPLYVKSHIQAVDIRLILNMLLLIGCSIFAKIVILKKNLKIQKLERVTILTKESDLKIKTAQNGPKRKEKDLPSFRSERHAGSVSW", "length": 396, "header": "tr|A0A9J7GTS0-1|A0A9J7GTS0_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 12A isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JL50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60/entry#A0A9J7JL50-1", "sequence": { "sequence": "MASSVLEIIKEEVTCSICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQNVNVCAQHGEKLQLFCEKDMVAICWLCERSQDHRGHQTALIEEVAHEYKEKLQAALEMQMANEKICDEWEDDLQKERTFWENQIQSDVENVQMAFKGLQEFLDFKEKSEKQKLMQEKEDVMNSLAESQNELMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTSIFTNRLESVGTAVPCEPHTSEDWKAVPLYVKSHIQAVDIRLILNMLLLIGCSIFAKIVILKKNLKIQKLERVTILTKESDLKIKTAQNGPKRKEKDLPSFRSERHAGSVSW", "length": 368, "header": "tr|A0A9J7JL50-1|A0A9J7FQ60_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 30A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113830641 PE=4 SV=1 CANONICAL=A0A9J7FQ60-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113830641", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830641", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FQ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 132, "start_aa": "Gln", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FQ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 281, "end_pos": 501, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FQ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ60" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 58, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646866" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 61 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FW27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 61 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007646866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646866" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613618.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646866" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd61", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27", "locus": {} } ], "crossref": [ { "id": "A0A9J7FW27", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FW27", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756204", "url": "https://www.ncbi.nlm.nih.gov/gene/100756204", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052391", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052391", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756204", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AINESSM", "url": "https://omabrowser.org/oma/group/AINESSM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061I5F3", "url": "https://www.orthodb.org/?gene=A0A061I5F3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FW27", "url": "https://www.orthodb.org/?gene=A0A9J7FW27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24133:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24133:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I5F3", "url": "https://www.uniprot.org/uniprotkb/A0A061I5F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I5F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I5F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNITKRGSRDLVADNAILLEDSLVAALHSRLYEAIIKEDCNTIKTLLRDYPVNQPLTIVAKPTTYRRLLSQQQTYTILPIHLAAEYCKPQSLLCLLQHGADPEVRDDQGFTTLHQMLLNWPITSASWAKPNTQIQKILADIQNNAVKCLSILCEHGAQVNAPVGNRKKHSPLHLAITYGTYPILSLLAQNGAQVNAINKANMTPLHMAAEKLDKNMVETLIACGADVNFAISSTGSTALKLAVCTASSKAGQLLAAGVDCIRLLLNHGAQVNAQDHQGQTALHKACFGGREVIINLLLEFEANANILTRNGESPIYMYLQRRSNIRDEMLLARLLYHTYPLRLSNKQGILPAGIMQPEFQFLRETLINLTKKPLSLEDICKRNIRNVFGEKYKFYLKQHLPGKLWNSIYTFYDFDYLMK", "length": 420, "header": "tr|A0A9J7FW27-1|A0A9J7FW27_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 61 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd61 PE=4 SV=1 CANONICAL=A0A9J7FW27-1" }, "isoforms": [ { "isoform_ac": "A0A061I5F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27/entry#A0A061I5F3-1", "sequence": { "sequence": "MGNITKRGSRDLVADNAILLEDSLVAALHSRLYEAIIKEDCNTIKTLLRDYPVNQPLTIVAKPTTYRRLLSQQTYTILPIHLAAEYCKPQSLLCLLQHGADPEVRDDQGFTTLHQMLLNWPITSASWAKPNTQIQKILADIQNNAVKCLSILCEHGAQVNAPVGNRKKHSPLHLAITYGTYPILSLLAQNGAQVNAINKANMTPLHMAAEKLDKNMVETLIACGADVNFAISSTGSTALKLAVCTASSKAGQLLAAGVDCIRLLLNHGAQVNAQDHQGQTALHKACFGGREVIINLLLEFEANANILTRNGESPIYMYLQRRSNIRDEMLLARLLYHTYPLRLSNKQGILPAGIMQPEFQFLRETLINLTKKPLSLEDICKRNIRNVFGEKYKFYLKQHLPGKLWNSIYTFYDFDYLMK", "length": 419, "header": "tr|A0A061I5F3-1|A0A9J7FW27_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 61 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd61 PE=4 SV=1 CANONICAL=A0A9J7FW27-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27/entry#A0A9J7FW27-1", "sequence": { "sequence": "MGNITKRGSRDLVADNAILLEDSLVAALHSRLYEAIIKEDCNTIKTLLRDYPVNQPLTIVAKPTTYRRLLSQQQTYTILPIHLAAEYCKPQSLLCLLQHGADPEVRDDQGFTTLHQMLLNWPITSASWAKPNTQIQKILADIQNNAVKCLSILCEHGAQVNAPVGNRKKHSPLHLAITYGTYPILSLLAQNGAQVNAINKANMTPLHMAAEKLDKNMVETLIACGADVNFAISSTGSTALKLAVCTASSKAGQLLAAGVDCIRLLLNHGAQVNAQDHQGQTALHKACFGGREVIINLLLEFEANANILTRNGESPIYMYLQRRSNIRDEMLLARLLYHTYPLRLSNKQGILPAGIMQPEFQFLRETLINLTKKPLSLEDICKRNIRNVFGEKYKFYLKQHLPGKLWNSIYTFYDFDYLMK", "length": 420, "header": "tr|A0A9J7FW27-1|A0A9J7FW27_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 61 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd61 PE=4 SV=1 CANONICAL=A0A9J7FW27-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I5F3", "url": "https://www.uniprot.org/uniprotkb/A0A061I5F3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I5F3", "url": "https://www.uniprot.org/uniprotkb/A0A061I5F3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756204", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6NGH8-1", "protein_name": "Ankyrin repeat domain-containing protein 61", "gene_name": "ANKRD61", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNITRKGSRDLVVDSAKSLEDGPSAALHSKLYEAIMREDCTTIEVLLRNHPVNQPITILPNSASNRLLLTQPTESIIPIHLAAKYHKAQSLLCLLRHGADPEVRDTTGLTTLNLMLLHWPVTSTTWAKPGNRTHRILTDIQNSSITCLRILCAHGAQVNTQGEISNKRSPLHLAIAYGCYPVLSILTQNGADVNAINEASMTPLHMAANMLNKEMMETLIAYGANVNCAVSSTGNTPLKLAVCTASSKAGRLLGAGVSCIRLLLTHGAKVNAQDYKGQTAIHEACFGGREAIINLLLEFEANVNILTRNGESPIYMYLQRSCNVRDTALLARLLYHTYPLRMTNNQGILPAGIMLPEFRLLRDTLIKQSQKPLSLQGICKRNIRNIYGEKYKQHLKQFLPVTIWNSVYCCYDLAYTS", "length": 418 }, "evidence": [ { "id": "A0A9J7FW27", "url": "https://omabrowser.org/oma/group/A0A9J7FW27/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2T9W8-1", "protein_name": "Ankyrin repeat domain-containing protein 61", "gene_name": "ANKRD61", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNITKRGSKGRAADGPKALEGSTAATLHVQLCEAIMRQDCAALRALLRSHPVNQPMTILTSSTGCSLANSRLFLSQETLSFLPIHLAAKYRKAQSLLCLLEHGADPEARDTQGFTTLHLMLLNWPITSTTWTKPRNKIQTMLTDVQRNAVLCLRILCAHGAQVNARVDSGHRHCPLHLATIYGTHLVLSILAQNGAQVNAQNGSSMTPLHMAADILNKEMMQTLIAWGASVNCAVSSTGNTALKLAVSTASSKAGRLLAAGLGCIRLLLVHGAQVNARDHDGQAAIHEACFGGREVIINLLLEFEANVNILTRNGESPIHMYLQRGSNIRDTALLARLLFRSYPLRLTNNQGKLPAGILLPEFHLLRETLLKLSQKPLSLEDICKRNVRNIYGEKHKQLLKRLLPGKIWNSVYGYHDLAHLLK", "length": 424 }, "evidence": [ { "id": "A0A9J7FW27", "url": "https://omabrowser.org/oma/group/A0A9J7FW27/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q641X1-1", "protein_name": "Ankyrin repeat domain-containing protein 61", "gene_name": "Ankrd61", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNITKRGSRDFAADSAVLLEGSLATALHSRLYEAIIKEDCDTIRTLLRNHPVNQPLTLLASSTGYRFLSQQTQPIFPIHLAAEYRKPQSLLCLLQHGADPEVRDAQGLTTLHLMLLNWPVTSTTWTKPSTRIQKILTDIQNNAVLCLRILCDHGAQVNARVDNSNKHSPLHLAITYGTYPVLSFLAQNGAQVNAINESSMTPLHMAADILNKNMIETLIACGANVNCAISSTGNTALKLAVCTASSKAGRLLAAGVGCIRLLLNHGAQVNAQDHEGQTALHEACFGGREVIINLLLEFEANVNILTRNGESPIYMYLQRSSNIRDVTLLARLLYRTYPLRLSNKQGALPAGIMLPEFHLLRETLIKLSKKPLTLEAICKRNIRNVYGEKYKFQLKKLLPAKLWNSIYGIYDFTYLLK", "length": 418 }, "evidence": [ { "id": "A0A9J7FW27", "url": "https://omabrowser.org/oma/group/A0A9J7FW27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CQM6-1", "protein_name": "Ankyrin repeat domain-containing protein 61", "gene_name": "Ankrd61", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNITKRGSRDLVADGATLVEESLATTLHSKLYEAIIKEDCNTIKTLLRNHPVNQPLTILANSTRYRLLSQQTQPIFPIHLAAEYRKPQSLLCLLQHGADPEVRDAQGFTTLHLMLLNWPASSTTWSKPSTQIQKILMDIQNNAVLCLCILCDHGAQVNARVDNSNKHSALHLAIIHGTYPVLSFLAQNGAQVNATNESSMTPLHMAADILNKNMIETLIAFGANVNCAISSTGNTALKLAVCTASSKVGRLLAAGVGCIRLLLNNGAQVNAQDHEGQTALHEACFGGREAIISLLLEFEANVNILTRNGESPIYMYLQRSSNIRDRSLLARLLYRTYPLRLSNKQGILPAGIMLPEYQLLRETLVKLSKKPLTLEAICKRSIRNVYGEKYKFHLEKLLPAKLWNSIYGIYDLTYLLKGEP", "length": 421 }, "evidence": [ { "id": "A0A9J7FW27", "url": "https://omabrowser.org/oma/group/A0A9J7FW27/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262426", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262426" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113831595", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FNP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FNP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "113831595", "url": "https://www.ncbi.nlm.nih.gov/gene/113831595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113831595", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113831595", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FNP9", "url": "https://www.orthodb.org/?gene=A0A9J7FNP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14389:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14389:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262426", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262426", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I8T1", "url": "https://www.uniprot.org/uniprotkb/A0A061I8T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I8T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I8T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFLKILFQLEHLFHLQATMSYSKPRSQDFHHDLRKNMKIKYHQPRVLQEEQNDPKMLQMQMGSRKRTNEIPNTQEQGLCSSKKTPQDPTTPLTKKINITLGVNAKTCMPCFIQEETASLYEALNILDPVKREIERHPGKEMLVCGIEGIEGFINLGMPLRCFPDGSHVLITFSKTESEEKENNEVCGRFDQSPAECVVFYIHAVGNREQRILRCRKLHKEGTKLCVYGFKGETIKSTLRKDGRFDSFVESAHWRLINNDTTIANTQPVDVLQGKLFQIDVERKESPWVAMAAQKSELEDRNFSELKGYIVNLYPTLKREREKMRAFIKEERENSKEQSFFKAHKRKFRELTKSSIPDKMVKLLSQFLDSTGLIVWDNNGNRGSATCFVFRGLYIFICRHVLNDIVGEGKEPLECVDLISQCVRVTFDEEYCKEPNSNFNSCFCIEPSFIISDVTLDYAVLKLKENGQQVPAGLYNGIALSHPSELAFMIGYENGQRVIDRCTVIPQGKLKEKNRQCVHGAEAADHNYSLKHLLLLHTNRSFPKMSEKPNDFTYNTFYCDSSGSPVFDCKGSLVAMHTAGFICEHENGVYNIIEFGTMMESILDDIKKKHKIWYNEVFANQDIEMCDEVYINEQDVEMCSEEF", "length": 643, "header": "tr|A0A9J7FNP9-1|A0A9J7FNP9_CRIGR Isoform 1 of Protein FAM111A-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831595 PE=4 SV=1 CANONICAL=A0A9J7FNP9-1" }, "isoforms": [ { "isoform_ac": "A0A061I8T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9/entry#A0A061I8T1-1", "sequence": { "sequence": "MSYSKPRSQDFHHDLRKNMKIKYHQPRVLQEEQNDPKMLQMQMGSRKRTNEIPNTQEQGLCSSKKTPQDPTTPLTKKINITLGVNAKTCMPCFIQEETASLYEALNILDPVKREIERHPGKEMLVCGIEGIEGFINLGMPLRCFPDGSHVLITFSKTESEEKENNEVCGRFDQSPAECVVFYIHAVGNREQRILRCRKLHKEGTKLCVYGFKGETIKSTLRKDGRFDSFVESAHWRLINNDTTIANTQPVDVLQGKLFQIDVERKESPWVAMAAQKSELEDRNFSELKGYIVNLYPTLKREREKMRAFIKEERENSKEQSFFKAHKRKFRELTKSSIPDKMVKLLSQFLDSTGLIVWDNNGNRGSATCFVFRGLYIFICRHVLNDIVGEGKEPLECVDLISQCVRVTFDEEYCKEPNSNFNSCFCIEPSFIISDVTLDYAVLKLKENGQQVPAGLYNGIALSHPSELAFMIGYENGQRVIDRCTVIPQGKLKEKNRQCVHGAEAADHNYSLKHLLLLHTNRSFPKMSEKPNDFTYNTFYCDSSGSPVFDCKGSLVAMHTAGFICEHENGVYNIIEFGTMMESILDDIKKKHKIWYNEVFANQDIEMCDEVYINEQDVEMCSEEF", "length": 624, "header": "tr|A0A061I8T1-1|A0A9J7FNP9_CRIGR Computationally mapped isoform of Protein FAM111A-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831595 PE=4 SV=1 CANONICAL=A0A9J7FNP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9/entry#A0A9J7FNP9-1", "sequence": { "sequence": "MNFLKILFQLEHLFHLQATMSYSKPRSQDFHHDLRKNMKIKYHQPRVLQEEQNDPKMLQMQMGSRKRTNEIPNTQEQGLCSSKKTPQDPTTPLTKKINITLGVNAKTCMPCFIQEETASLYEALNILDPVKREIERHPGKEMLVCGIEGIEGFINLGMPLRCFPDGSHVLITFSKTESEEKENNEVCGRFDQSPAECVVFYIHAVGNREQRILRCRKLHKEGTKLCVYGFKGETIKSTLRKDGRFDSFVESAHWRLINNDTTIANTQPVDVLQGKLFQIDVERKESPWVAMAAQKSELEDRNFSELKGYIVNLYPTLKREREKMRAFIKEERENSKEQSFFKAHKRKFRELTKSSIPDKMVKLLSQFLDSTGLIVWDNNGNRGSATCFVFRGLYIFICRHVLNDIVGEGKEPLECVDLISQCVRVTFDEEYCKEPNSNFNSCFCIEPSFIISDVTLDYAVLKLKENGQQVPAGLYNGIALSHPSELAFMIGYENGQRVIDRCTVIPQGKLKEKNRQCVHGAEAADHNYSLKHLLLLHTNRSFPKMSEKPNDFTYNTFYCDSSGSPVFDCKGSLVAMHTAGFICEHENGVYNIIEFGTMMESILDDIKKKHKIWYNEVFANQDIEMCDEVYINEQDVEMCSEEF", "length": 643, "header": "tr|A0A9J7FNP9-1|A0A9J7FNP9_CRIGR Isoform 1 of Protein FAM111A-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831595 PE=4 SV=1 CANONICAL=A0A9J7FNP9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I8T1", "url": "https://www.uniprot.org/uniprotkb/A0A061I8T1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I8T1", "url": "https://www.uniprot.org/uniprotkb/A0A061I8T1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113831595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113831595", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 259, "end_pos": 261 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 527, "end_pos": 529 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FNK4-1", "uniprot_ac": "A0A9J7FNK4", "uniprot_id": "A0A9J7FNK4_CRIGR", "mass": { "chemical_mass": 17971.0, "monoisotopic_mass": 17971.0 }, "refseq": { "ac": "XP_027262335", "name": "uncharacterized protein C9orf85 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262335" }, "gene_names": [ { "name": "C3H9orf85", "type": "recommended", "evidence": [ { "id": "A0A9J7FNK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4" } ] }, { "name": "C3H9orf85", "type": "synonym", "evidence": [ { "id": "XP_027262335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262335" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C9orf85 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FNK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C9orf85 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027262335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262335" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262335", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262335" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C3H9orf85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FNK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FNK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773457", "url": "https://www.ncbi.nlm.nih.gov/gene/100773457", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019351", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019351", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773457", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773457", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FNK4", "url": "https://www.orthodb.org/?gene=A0A9J7FNK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22876", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22876", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22876:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22876:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262335", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262335", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IED2", "url": "https://www.uniprot.org/uniprotkb/A0A061IED2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IED2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IED2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPSGSRPCSRKLKITTRMSLYSSSLCLCSYCFSKTPSPYKINAKVHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIIIPFNKEPETSVNTENQGSNRRRSCRGKEDSDEDLDAGTDSDDDDGDS", "length": 159, "header": "tr|A0A9J7FNK4-1|A0A9J7FNK4_CRIGR Isoform 1 of Uncharacterized protein C9orf85 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H9orf85 PE=4 SV=1 CANONICAL=A0A9J7FNK4-1" }, "isoforms": [ { "isoform_ac": "A0A061IED2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4/entry#A0A061IED2-1", "sequence": { "sequence": "MSSQKGNVARSRPQKHQNTFTFKNDKFDKSVQTKKINAKVHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIIIPFNKEPETSVNTENQGSNRRRSCRGKEDSDEDLDAGTDSDDDDGDS", "length": 153, "header": "tr|A0A061IED2-1|A0A9J7FNK4_CRIGR Computationally mapped isoform of Uncharacterized protein C9orf85 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H9orf85 PE=4 SV=1 CANONICAL=A0A9J7FNK4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4/entry#A0A9J7FNK4-1", "sequence": { "sequence": "MCPSGSRPCSRKLKITTRMSLYSSSLCLCSYCFSKTPSPYKINAKVHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIIIPFNKEPETSVNTENQGSNRRRSCRGKEDSDEDLDAGTDSDDDDGDS", "length": 159, "header": "tr|A0A9J7FNK4-1|A0A9J7FNK4_CRIGR Isoform 1 of Uncharacterized protein C9orf85 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C3H9orf85 PE=4 SV=1 CANONICAL=A0A9J7FNK4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK4/entry#A0A9J7FPP7-1", "sequence": { "sequence": "MSSQKGNVARSRPQKHQNTFTFKNDKFDKSVQTKKINAKVHDGVCQRCKEVLEWRVKYSKYKPLSKPKKWEMRAKGD", "length": 77, "header": "tr|A0A9J7FPP7-1|A0A9J7FPP7_CRIGR Computationally mapped isoform of Uncharacterized protein C9orf85 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C3H9orf85 PE=4 SV=1 CANONICAL=A0A9J7FNK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FU52-1", "uniprot_ac": "A0A9J7FU52", "uniprot_id": "A0A9J7FU52_CRIGR", "mass": { "chemical_mass": 30156.0, "monoisotopic_mass": 30156.0 }, "refseq": { "ac": "XP_007642945", "name": "transmembrane protein 41A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642945" }, "gene_names": [ { "name": "Tmem41a", "type": "recommended", "evidence": [ { "id": "A0A9J7FU52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52" } ] }, { "name": "Tmem41a", "type": "synonym", "evidence": [ { "id": "XP_007642945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642945" } ] } ], "protein_names": [ { "name": "Transmembrane protein 41A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FU52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 41A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642945" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614046.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642945" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem41a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52", "locus": {} } ], "crossref": [ { "id": "A0A9J7FU52", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FU52", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755275", "url": "https://www.ncbi.nlm.nih.gov/gene/100755275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755275", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WWMTGTG", "url": "https://omabrowser.org/oma/group/WWMTGTG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A3L7HRB4", "url": "https://www.orthodb.org/?gene=A0A3L7HRB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FU52", "url": "https://www.orthodb.org/?gene=A0A9J7FU52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JPL4", "url": "https://www.orthodb.org/?gene=A0A9J7JPL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43220", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43220", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43220:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43220:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642945", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HRB4", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HRB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRALFGLFLVFGGCTFALYLLSTHLPVGPRLASAEEPQGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSVFGKQLVISYFPDKVALLQRKVEENRSSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIAFWAEATDCVLEPPSDRHLAQFIAGKEMPLVLSQLDCSPKGENEGKWPLVMACPCQPWGPKDMSGMVLYLLIRELKV", "length": 268, "header": "tr|A0A9J7FU52-1|A0A9J7FU52_CRIGR Isoform 1 of Transmembrane protein 41A isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem41a PE=3 SV=1 CANONICAL=A0A9J7FU52-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HRB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52/entry#A0A3L7HRB4-1", "sequence": { "sequence": "MRALFGLFLVFGGCTFALYLLSTHLPVGPRLASAEEPQGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSVFGKQLVISYFPDKVALLQRKVEENRSSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWETVLKLLAIALVALVPGTLIKKFSRKHLALSGTSNTARLDGRKDA", "length": 264, "header": "tr|A0A3L7HRB4-1|A0A9J7FU52_CRIGR Computationally mapped isoform of Transmembrane protein 41A isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem41a PE=3 SV=1 CANONICAL=A0A9J7FU52-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52/entry#A0A9J7FU52-1", "sequence": { "sequence": "MRALFGLFLVFGGCTFALYLLSTHLPVGPRLASAEEPQGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSVFGKQLVISYFPDKVALLQRKVEENRSSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIAFWAEATDCVLEPPSDRHLAQFIAGKEMPLVLSQLDCSPKGENEGKWPLVMACPCQPWGPKDMSGMVLYLLIRELKV", "length": 268, "header": "tr|A0A9J7FU52-1|A0A9J7FU52_CRIGR Isoform 1 of Transmembrane protein 41A isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem41a PE=3 SV=1 CANONICAL=A0A9J7FU52-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU52/entry#A0A9J7JPL4-1", "sequence": { "sequence": "MRALFGLFLVFGGCTFALYLLSTHLPVGPRLASAEEPQGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSVFGKQLVISYFPDKVALLQRKVEENRSSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIASSSQPLEVVYADFKPPLAGT", "length": 212, "header": "tr|A0A9J7JPL4-1|A0A9J7JPL4_CRIGR Computationally mapped isoform of Transmembrane protein 41A isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem41a PE=3 SV=1 CANONICAL=A0A9J7FU52-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265448" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS83" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prxl2c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS83", "locus": {} } ], "crossref": [ { "id": "A0A9J7FS83", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FS83", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02970", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02970", "database": "CDD", "categories": [ "Protein Classification" ] 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIZ3-1", "uniprot_ac": "A0A9J7FIZ3", "uniprot_id": "A0A9J7FIZ3_CRIGR", "mass": { "chemical_mass": 143129.0, "monoisotopic_mass": 143129.0 }, "refseq": { "ac": "XP_027258844", "name": "A-kinase anchor protein 2 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258844" }, "gene_names": [ { "name": "Palm2akap2", "type": "recommended", "evidence": [ { "id": "A0A9J7FIZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3" } ] }, { "name": "Palm2akap2", "type": "synonym", "evidence": [ { "id": "XP_027258844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258844" } ] } ], "protein_names": [ { "name": "A-kinase anchor protein 2 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027258844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258844" }, { "id": "A0A9J7FIZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258844" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Palm2akap2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3", "locus": {} } ], "crossref": [ { "id": "100767422", "url": "https://www.ncbi.nlm.nih.gov/gene/100767422", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767422", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767422", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIZ3", "url": "https://www.orthodb.org/?gene=A0A9J7FIZ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10498", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10498", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10498:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10498:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03285", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03285", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15304", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15304", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258844", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LN13", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LN13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LN13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LN13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAEAELHKERLQAIAEKRKRQTEIEGKRRQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEEARRRQSEEDELKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFSTADGAIYAMEINVEKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVHKLSAKDVEELIQKAGQSSFRGHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDHASGNPGQQAQPSSTEGPEANLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGKEESLATEPAPASGWSSVLLQGDEATADPIETNEDMAIEKPSQLSEDANQLRSKQDNCGDIHLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERLDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE", "length": 1299, "header": "tr|A0A9J7FIZ3-1|A0A9J7FIZ3_CRIGR Isoform 1 of A-kinase anchor protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Palm2akap2 PE=4 SV=1 CANONICAL=A0A9J7FIZ3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LN13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#A0A8C2LN13-1", "sequence": { "sequence": "MAIEKPSQLSEDANQLRSKQDNCGDIHLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERLDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE", "length": 912, "header": "tr|A0A8C2LN13-1|A0A9J7FIZ3_CRIGR Computationally mapped isoform of A-kinase anchor protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Palm2akap2 PE=4 SV=1 CANONICAL=A0A9J7FIZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#A0A9J7FFG4-1", "sequence": { "sequence": "MEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERLDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE", "length": 871, "header": "tr|A0A9J7FFG4-1|A0A9J7FIZ3_CRIGR Computationally mapped isoform of A-kinase anchor protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Palm2akap2 PE=4 SV=1 CANONICAL=A0A9J7FIZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FIZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#A0A9J7FIZ3-1", "sequence": { "sequence": "MMAEAELHKERLQAIAEKRKRQTEIEGKRRQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEEARRRQSEEDELKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFSTADGAIYAMEINVEKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVHKLSAKDVEELIQKAGQSSFRGHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDHASGNPGQQAQPSSTEGPEANLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGKEESLATEPAPASGWSSVLLQGDEATADPIETNEDMAIEKPSQLSEDANQLRSKQDNCGDIHLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERLDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE", "length": 1299, "header": "tr|A0A9J7FIZ3-1|A0A9J7FIZ3_CRIGR Isoform 1 of A-kinase anchor protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Palm2akap2 PE=4 SV=1 CANONICAL=A0A9J7FIZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJ78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#A0A9J7FJ78-1", "sequence": { "sequence": "MAEAELHKERLQAIAEKRKRQTEIEGKRRQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEEARRRQSEEDELKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFSTADGAIYAMEINVEKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVHKLSAKDVEELIQKAGQSSFRGHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDHASGNPGQQAQPSSTEGPEANLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGKEESLATEPAPASGWSSVLLQGDEATADPIETNEDMAIEKPSQLSEDANQLRSKQDNCGDIHLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGPGGHTG", "length": 1213, "header": "tr|A0A9J7FJ78-1|A0A9J7FJ78_CRIGR Computationally mapped isoform of A-kinase anchor protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Palm2akap2 PE=4 SV=1 CANONICAL=A0A9J7FIZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIZ3/entry#A0A9J7JHV5-1", "sequence": { "sequence": "MAEAELHKERLQAIAEKRKRQTEIEGKRRQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEEARRRQSEEDELKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFSTADGAIYAMEINVEKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVHKLSAKDVEELIQKAGQSSFRGHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDHASGNPGQQAQPSSTEGPEANLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGKEESLATEPAPASGWSSVLLQGDEATADPIETNEDMAIEKPSQLSEDANQLRSKQDNCGDIHLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHSKDHSSPSYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANCCDSSVDGTYNGISSPEPGAARLVSGLGSPAYTPATTQAEPTEKASGRQVPPHIELSRSPSDTMAEGERANGHSTDQPQGLLGDGLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSKLFEEDEREKEQFCVRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHLESHRKYKERKERRAQQEQLQLQQQQQQQQQQQQQQQQQQQQMPLSQLCTAPAPQEHLDGIEHTKEDVVTEQIDFSAARKQFQLMENSRQPLAKGQSTPRLFSIKPFYRPLGSINSDKPPTILRPAAVGTPPEDSSTQAAKGQKVSCVSDSPSAGAGPGSTATQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETPTALQENSLADFSLSQTPQTDNPSEGGEGISKSFSDHGFYSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQADKAELHTSKGGSEQQGPEATMEEAESQASGSEKPHSMFAPPQVSSPVQEKRDVLPKILPVEDKALREKGPSQPLTAVQPSGPVNMEASRPEGGYFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVAQSNPSPRAKNALSLPSRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERLDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7R7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4432, "header": "tr|A0A9J7FW65-1|A0A9J7FW65_CRIGR Isoform 1 of Probable E3 ubiquitin-protein ligase HECTD4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LNW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A8C2LNW5-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4418, "header": "tr|A0A8C2LNW5-1|A0A9J7FW65_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7FVM7-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4416, "header": "tr|A0A9J7FVM7-1|A0A9J7FVM7_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X8 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7FW65-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4432, "header": "tr|A0A9J7FW65-1|A0A9J7FW65_CRIGR Isoform 1 of Probable E3 ubiquitin-protein ligase HECTD4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7FXG0-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4427, "header": "tr|A0A9J7FXG0-1|A0A9J7FXG0_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X6 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7GVB5-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4397, "header": "tr|A0A9J7GVB5-1|A0A9J7GVB5_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X9 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7GXL3-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4423, "header": "tr|A0A9J7GXL3-1|A0A9J7GXL3_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X7 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7GXZ6-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4430, "header": "tr|A0A9J7GXZ6-1|A0A9J7GXZ6_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7GZ28-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4431, "header": "tr|A0A9J7GZ28-1|A0A9J7GZ28_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65/entry#A0A9J7K7R7-1", "sequence": { "sequence": "MGSSAAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHEREGSGDEETLALLKRQGLLQQPEQAPFTSRVGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQRQTELGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSSTGSSSENKDADLGRCLTADGRYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGSGHLLHRPVSFDNKPHSLFQVLDQNTLQVCQTVPMPASPLPAGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELMVENGVFVASPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEARHLSSICDIMEKAMVNRDTCIVRCILVVFQVVFKFFFSPQSERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKASILALATQILTGCDEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKSNSLFSVLKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVEDAMQGKLENNMPFFYDYHFNENKMKELELLCSLKEVSFDGNDLENMVLSLREKFLQEVNSLTQKPPHPLAKTKTLVKSLMNRAELLLHVTIAAQSSLTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQSFVFCRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTSPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNNEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNPLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPSTGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSNGKSEDEPDAIPTAVLLHVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHTLEQRKHPAGLTSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGGSGAVAVGDQGRFSTYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSSKRQSSRAADADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEAVVRGAIRKACNAHGGVFKDEIYIPLQEEDPKKPKDKAEGVDSKVESERLLGFTSVDSLEGSTSSSLAPAMSISASASTSQASVCSSQGVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVSDVGSMYTVTSLDTQPLTARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQSPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKAKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADATDPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLPTESPEGPKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIELFWGALETFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG", "length": 4431, "header": "tr|A0A9J7K7R7-1|A0A9J7K7R7_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HECTD4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Hectd4 PE=4 SV=1 CANONICAL=A0A9J7FW65-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1509, "start_aa": "Thr", "end_pos": 1509, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1509", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3918, "start_aa": "Thr", "end_pos": 3918, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3918", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LNW5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNW5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LNW5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNW5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771362", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771362", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glucose homeostasis", "id": "GO:0042593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042593", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1558, "end_pos": 1560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2149, "end_pos": 2151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2485, "end_pos": 2487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3287, "end_pos": 3289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3302, "end_pos": 3304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3655, "end_pos": 3657, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3961, "end_pos": 3963, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4009, "end_pos": 4011, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, 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"o_linked_sites": [ 1509, 3918 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1558, "end_pos": 1560 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 2149, "end_pos": 2151 }, { "start_pos": 2485, "end_pos": 2487 }, { "start_pos": 3287, "end_pos": 3289 }, { "start_pos": 3302, "end_pos": 3304 }, { "start_pos": 3655, "end_pos": 3657 }, { "start_pos": 3961, "end_pos": 3963 }, { "start_pos": 4009, "end_pos": 4011 }, { "start_pos": 512, "end_pos": 514 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FJG7-1", "uniprot_ac": "A0A9J7FJG7", "uniprot_id": "A0A9J7FJG7_CRIGR", "mass": { "chemical_mass": 32369.0, "monoisotopic_mass": 32369.0 }, "refseq": { "ac": "XP_027259124", "name": "protein FAM219A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259124" }, "gene_names": [ { "name": "Fam219a", "type": "recommended", "evidence": [ { "id": "A0A9J7FJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7" } ] }, { "name": "Fam219a", "type": "synonym", "evidence": [ { "id": "XP_027259124", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259124" } ] } ], "protein_names": [ { "name": "Protein FAM219A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#names_and_taxonomy" } ] }, { "name": "protein FAM219A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027259124", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259124" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259124", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259124" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam219a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJG7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770378", "url": "https://www.ncbi.nlm.nih.gov/gene/100770378", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770378", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770378", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJG7", "url": "https://www.orthodb.org/?gene=A0A9J7FJG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31281", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31281", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31281:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31281:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259124", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259124", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LRA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LRA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNU3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLTPMRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 293, "header": "tr|A0A9J7FJG7-1|A0A9J7FJG7_CRIGR Isoform 1 of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LRA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A8C2LRA1-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 168, "header": "tr|A0A8C2LRA1-1|A0A9J7FJG7_CRIGR Computationally mapped isoform of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FFM7-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLTPMRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 292, "header": "tr|A0A9J7FFM7-1|A0A9J7FJG7_CRIGR Computationally mapped isoform of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FFV5-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 167, "header": "tr|A0A9J7FFV5-1|A0A9J7FJG7_CRIGR Computationally mapped isoform of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FHD6-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 184, "header": "tr|A0A9J7FHD6-1|A0A9J7FJG7_CRIGR Computationally mapped isoform of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FJC5-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 185, "header": "tr|A0A9J7FJC5-1|A0A9J7FJC5_CRIGR Computationally mapped isoform of Protein FAM219A isoform X7 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FJG7-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLTPMRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 293, "header": "tr|A0A9J7FJG7-1|A0A9J7FJG7_CRIGR Isoform 1 of Protein FAM219A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FJL0-1", "sequence": { "sequence": "MRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 271, "header": "tr|A0A9J7FJL0-1|A0A9J7FJL0_CRIGR Computationally mapped isoform of Protein FAM219A isoform X6 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7FKC0-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLTPMRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 276, "header": "tr|A0A9J7FKC0-1|A0A9J7FKC0_CRIGR Computationally mapped isoform of Protein FAM219A isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GNU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7GNU3-1", "sequence": { "sequence": "MMEEIDRFQDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 157, "header": "tr|A0A9J7GNU3-1|A0A9J7GNU3_CRIGR Computationally mapped isoform of Protein FAM219A isoform X11 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJG7/entry#A0A9J7JI19-1", "sequence": { "sequence": "MMEEIDRFQVPTAHSEMQPLTPMRASAVTILWYFGIPVPLMITTPVGFFGSEERLWIPCSVYSCAPDRKSKCTTFSMGQLSRKHRAESCCLQTLAYLHKSNPTELLGGAGSLRGVRGQGLIMRARRHQDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ", "length": 275, "header": "tr|A0A9J7JI19-1|A0A9J7JI19_CRIGR Computationally mapped isoform of Protein FAM219A isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam219a PE=3 SV=1 CANONICAL=A0A9J7FJG7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LRA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRA1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LRA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRA1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770378", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770378", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT24-1", "uniprot_ac": "A0A9J7FT24", "uniprot_id": "A0A9J7FT24_CRIGR", "mass": { "chemical_mass": 122187.0, "monoisotopic_mass": 122187.0 }, "refseq": { "ac": "XP_016832823", "name": "constitutive coactivator of PPAR-gamma-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832823" }, "gene_names": [ { "name": "Fam120a", "type": "recommended", "evidence": [ { "id": "A0A9J7FT24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24" } ] }, { "name": "Fam120a", "type": "synonym", "evidence": [ { "id": "XP_016832823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832823" } ] } ], "protein_names": [ { "name": "Constitutive coactivator of PPAR-gamma-like protein 1 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7FT24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24/entry#names_and_taxonomy" } ] }, { "name": "constitutive coactivator of PPAR-gamma-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016832823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832823" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 397 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613609.1) and transcript sequence (IACG01094209.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016832823.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016832823", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832823" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam120a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT24", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT24", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759484", "url": "https://www.ncbi.nlm.nih.gov/gene/100759484", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759484", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759484", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT24", "url": "https://www.orthodb.org/?gene=A0A9J7FT24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016832823", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832823", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LS83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LS83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LS83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LS83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSLEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKPMPFHPPHYLARPNPFGMPGMVPPYVPPQMLNIPQAPLQAKPAVPQVPSPGGTPGQGPYPYSLPEPALALDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGAANHISGNKIGWEKAGSHAEPLARGDPGDQVKAEGSSTASSGCQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDKNRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFPPPPALPFYPASVYPRHFGPVPPSQGRGRGFAGPTGVCGFGGHYGETVATGPYRAFRVAATSGHCGAFSGSDSSRTSKSQGGVQPMPSQGGKLEIAGTVVGHWAGNRRGRGGRGPFPLQVVSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAEEVAKELKSKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTGDTRAPSHSESALNNDSKTCNTNPHLNALSTDSACRREAALEAAVLNKEE", "length": 1119, "header": "tr|A0A9J7FT24-1|A0A9J7FT24_CRIGR Isoform 1 of Constitutive coactivator of PPAR-gamma-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam120a PE=3 SV=1 CANONICAL=A0A9J7FT24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LS83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24/entry#A0A8C2LS83-1", "sequence": { "sequence": "MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSLEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKPMPFHPPHYLARPNPFGMPGMVPPYVPPQMLNIPQAPLQAKPAVPQVPSPGGTPGQGPYPYSLPEPALALDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGAANHISGNKIGWEKAGSHAEPLARGDPGDQVKAEGSSTASSGCQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDKNRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFPPPPALPFYPASVYPRHFGPVPPSQGRGRGFAGVCGFGGHYGETVATGPYRAFRVAATSGHCGAFSGSDSSRTSKSQGGVQPMPSQGGKLEIAGTVVGHWAGNRRGRGGRGPFPLQVVSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAEEVAKELKSKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTGDTRAPSHSESALNNDSKTCNTNPHLNALSTDSACRREAALEAAVLNKEE", "length": 1116, "header": "tr|A0A8C2LS83-1|A0A9J7FT24_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam120a PE=3 SV=1 CANONICAL=A0A9J7FT24-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24/entry#A0A9J7FR76-1", "sequence": { "sequence": "MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSLEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKPMPFHPPHYLARPNPFGMPGMVPPYVPPQMLNIPQAPLQAKPAVPQVPSPGGTPGQGPYPYSLPEPALALDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGAANHISGNKIGWEKAGSHAEPLARGDPGDQVKAEGSSTASSGCQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDKNRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFPPPPALPFYPASVYPRHFGPVPPSQGRGRGFAGVQPMPSQGGKLEIAGTVVGHWAGNRRGRGGRGPFPLQVVSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAEEVAKELKSKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTGDTRAPSHSESALNNDSKTCNTNPHLNALSTDSACRREAALEAAVLNKEE", "length": 1070, "header": "tr|A0A9J7FR76-1|A0A9J7FR76_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Fam120a PE=3 SV=1 CANONICAL=A0A9J7FT24-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FT24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24/entry#A0A9J7FT24-1", "sequence": { "sequence": "MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSLEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKPMPFHPPHYLARPNPFGMPGMVPPYVPPQMLNIPQAPLQAKPAVPQVPSPGGTPGQGPYPYSLPEPALALDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGAANHISGNKIGWEKAGSHAEPLARGDPGDQVKAEGSSTASSGCQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDKNRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFPPPPALPFYPASVYPRHFGPVPPSQGRGRGFAGPTGVCGFGGHYGETVATGPYRAFRVAATSGHCGAFSGSDSSRTSKSQGGVQPMPSQGGKLEIAGTVVGHWAGNRRGRGGRGPFPLQVVSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAEEVAKELKSKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTGDTRAPSHSESALNNDSKTCNTNPHLNALSTDSACRREAALEAAVLNKEE", "length": 1119, "header": "tr|A0A9J7FT24-1|A0A9J7FT24_CRIGR Isoform 1 of Constitutive coactivator of PPAR-gamma-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam120a PE=3 SV=1 CANONICAL=A0A9J7FT24-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 386, "start_aa": "Thr", "end_pos": 386, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr386", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LS83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LS83" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LS83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LS83" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759484", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759484", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1066, "end_pos": 1068, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 845, "end_pos": 847, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 386 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1066, "end_pos": 1068 }, { "start_pos": 1084, "end_pos": 1086 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 845, "end_pos": 847 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQB0-1", "uniprot_ac": "A0A9J7FQB0", "uniprot_id": "A0A9J7FQB0_CRIGR", "mass": { "chemical_mass": 122071.0, "monoisotopic_mass": 122071.0 }, "refseq": { "ac": "XP_027266061", "name": "partner and localizer of BRCA2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266061" }, "gene_names": [ { "name": "Palb2", "type": "recommended", "evidence": [ { "id": "A0A9J7FQB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0" } ] }, { "name": "Palb2", "type": "synonym", "evidence": [ { "id": "XP_027266061", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266061" } ] } ], "protein_names": [ { "name": "Partner and localizer of BRCA2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FQB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#names_and_taxonomy" } ] }, { "name": "partner and localizer of BRCA2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027266061", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266061" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266061" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Palb2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQB0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773675", "url": "https://www.ncbi.nlm.nih.gov/gene/100773675", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773675", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773675", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LUB2", "url": "https://www.orthodb.org/?gene=A0A8C2LUB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FQB0", "url": "https://www.orthodb.org/?gene=A0A9J7FQB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JEU9", "url": "https://www.orthodb.org/?gene=A0A9J7JEU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14662:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14662:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16756", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16756", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266061", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LUB2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LUB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXM5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEU9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 1111, "header": "tr|A0A9J7FQB0-1|A0A9J7FQB0_CRIGR Isoform 1 of Partner and localizer of BRCA2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LUB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A8C2LUB2-1", "sequence": { "sequence": "MEEPSGKPLSCAEKEKLKEKLAFLKKEYSKTLARLKTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 384, "header": "tr|A0A8C2LUB2-1|A0A9J7FQB0_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FQB0-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 1111, "header": "tr|A0A9J7FQB0-1|A0A9J7FQB0_CRIGR Isoform 1 of Partner and localizer of BRCA2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FQT2-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKTEITDLPACDSWNPGSLHLVSKFKVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 335, "header": "tr|A0A9J7FQT2-1|A0A9J7FQT2_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X15 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FR03-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWSDGLQMLAIVAGFGGQDFWALNSDHQACLASTFTC", "length": 998, "header": "tr|A0A9J7FR03-1|A0A9J7FR03_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FR42-1", "sequence": { "sequence": "MEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 517, "header": "tr|A0A9J7FR42-1|A0A9J7FR42_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FRK7-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRQKRT", "length": 1046, "header": "tr|A0A9J7FRK7-1|A0A9J7FRK7_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FSY9-1", "sequence": { "sequence": "MEEPSGKPLSCAEKEKTEITDLPACDSWNPGSLHLVSKFKVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 310, "header": "tr|A0A9J7FSY9-1|A0A9J7FSY9_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X16 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FTG0-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 1057, "header": "tr|A0A9J7FTG0-1|A0A9J7FTG0_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FTL5-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRLTMMGHRESP", "length": 1052, "header": "tr|A0A9J7FTL5-1|A0A9J7FTL5_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7FUR2-1", "sequence": { "sequence": "MEEPSGKPLSCAEKEKLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 1106, "header": "tr|A0A9J7FUR2-1|A0A9J7FUR2_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GUK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7GUK6-1", "sequence": { "sequence": "MCQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 351, "header": "tr|A0A9J7GUK6-1|A0A9J7GUK6_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X14 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7GXM5-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSD", "length": 718, "header": "tr|A0A9J7GXM5-1|A0A9J7GXM5_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X11 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7JEU9-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 389, "header": "tr|A0A9J7JEU9-1|A0A9J7JEU9_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7JJ85-1", "sequence": { "sequence": "MGKPKVPLTPSASPTPLLPPYLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKVRRISC", "length": 793, "header": "tr|A0A9J7JJ85-1|A0A9J7JJ85_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X10 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JL75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7JL75-1", "sequence": { "sequence": "MEEPSGKPLSCAEKEKTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 364, "header": "tr|A0A9J7JL75-1|A0A9J7JL75_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X13 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0/entry#A0A9J7JMR7-1", "sequence": { "sequence": "MEEPSGKPLSCAEKEKRAKRAEKVKNSKKAIEDCVSHQETSPQLSRSEPINEGSPCDTVQINHLDKETGENISVILDVEPQPFNHKNDQEVLYTQRAGDIQEQFPYVINSPDGKKGQDTLPGRAKKRWKKTSVSQEKEDLFDINSLMLPDKQGKTQEAISSKSPRSPITEKICLLNLKSKTPDPPALDTEIDGERLLVPLSGKSERDIDIPLKGNNVSMETTVPSWAMSDNNHSQHLEHTPPNSDCKIPTQSPASSINLEAQGRKITIFTDNPVVNKAVSASDQLPGSPISEAINSCSVSDLTHSNLPANTTQNFKSLKSPGNIVDERNETLQADEILGSSKSFSPVAVSPPATESQIHSCTMLEGLPFPAEYYVRTTRHMSDYQRKIALEAVIQSHLGVKKKGLKNKRKATKNVVLSSEETDQSESSMLDTCTGQSSSGSPSQELISSAEVSSPTTPAEADSHPGRRHRGKQKSVRVSTLDRQLLFPPYSTLGINMSKGKFTKHKCQDGKVVIHDFELPDEDFGPLKLKKLKSYSEKLIEPPNLKNYGERLPWERNHATLEELQIDSEMEDLKEELPAPSREEQHPGPTLKRKPTSKGLSSSVLLFTPTDTAAPNYSGRSTAYLCSPAFPVLGVTPAFASQATSENVATEIRQTCSTSQPSHLGDTSRLANNKQCNSSASSPKLDTNLHVSGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLKLHEYSTEQTEITDLPACDSWNPGSLHLVSKFKNPSSSCSVDVSAVWWERAGVKEPCIITACEDVVSLWKPLDTLQWEKVHTWQFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLGLTKRRLVSSIGTFCNQQIQIMTFAEDGGSKDEQLLMPPDETILTFAEVQGMQDALLGTTTVNNIVIWNLKTGQLLKKVHIDDSYQASICHRAYSEMGLLFVVLSHPCAKESQAFGSPMFQLLVINPKTAQSVRVLLCCLPQGQAGRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTAVLPPVSDQNWSLVKWSGTDSHLLAGQKDGNIFIYRYF", "length": 1086, "header": "tr|A0A9J7JMR7-1|A0A9J7JMR7_CRIGR Computationally mapped isoform of Partner and localizer of BRCA2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Palb2 PE=4 SV=1 CANONICAL=A0A9J7FQB0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LUB2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUB2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LUB2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUB2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773675", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773675", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1083, "end_pos": 1085, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 521, "end_pos": 523, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, 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This record is derived from a genomic sequence (NW_003614763.1) annotated using gene prediction method: Gnomon. 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PE=4 SV=1 CANONICAL=A0A9J7FP20-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP20/entry#A0A9J7GTE3-1", "sequence": { "sequence": "MAGGCGQEAAGIVADPAAKWRPFGQMLFHLSGLYYALYFLATFLMIAYKSQVFSYPCNCLVLDLVLLLLMGILEVARLYLGTKGNLTETEVPLAASLAFTAVSGLLSVHFLLWQTLVLWLDSVLSTILLVLHGLEAGLQVVVIADFIR", "length": 148, "header": "tr|A0A9J7GTE3-1|A0A9J7GTE3_CRIGR Computationally mapped isoform of Transmembrane protein 80 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem80 PE=4 SV=1 CANONICAL=A0A9J7FP20-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP20/entry#A0A9J7GXF7-1", "sequence": { "sequence": "MAAVRPGRGSFKMLFHLSGLYYALYFLATFLMIAYKSQVFSYPCNCLVLDLVLLLLMGILEVARLYLGTKGNLTETEVPLAASLAFTAVSGLLSVHFLLWQTLVLWLDSVLSTILLVLHGLEAGLQVVVIADFIR", "length": 135, "header": "tr|A0A9J7GXF7-1|A0A9J7GXF7_CRIGR Computationally mapped isoform of Transmembrane protein 80 isoform X6 OS=Cricetulus griseus OX=10029 GN=Tmem80 PE=4 SV=1 CANONICAL=A0A9J7FP20-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP20/entry#A0A9J7JLW8-1", "sequence": { "sequence": "MAAVRPGRGSFKLSSVPLQMLFHLSGLYYALYFLATFLMIAYKSQVFSYPCNCLVLDLVLLLLMGILEVARLYLGTKGNLTETEVPLAASLAFTAVSGLLSVHFLLWQTLVLWLDSVLSTILLVLHGLEAGLQVVVIADFIR", "length": 142, "header": "tr|A0A9J7JLW8-1|A0A9J7JLW8_CRIGR Computationally mapped isoform of Transmembrane protein 80 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tmem80 PE=4 SV=1 CANONICAL=A0A9J7FP20-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257853", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257853" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ15" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ginm1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ15", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJ15", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJ15", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762603", "url": "https://www.ncbi.nlm.nih.gov/gene/100762603", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042319", 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"MEGALSAPLPVRLLLLVALPAAGWLTTSAPRPPSTAPQDGIRINVTTLKDNGEVSKEQVVLNITYENGQVYVNDLPVNSGVTRISCQTLIVKSENLENLEEKEYFGIVTVRILVHEWPMTSGSSSQLIVIQEEVVEIDGRQAQQKDVIEIDILVKNQRILRHSNFSLPLEESMLYSLSQNSDILFTLPNFSKKGSVTSLQTTSHYLIGSVETTVEGNALPGKLPETPLRAEPPSSYKVMCQWMEKLRRALCGLWGSVFPVLFMFLNVMVVGVLGAAGVIAMLKVLCPVYENKGILQVDKMNVIPVVPTILYPEGSEKTEEKLKDKMCI", "length": 328, "header": "tr|A0A9J7FFR3-1|A0A9J7FJ15_CRIGR Computationally mapped isoform of Glycoprotein integral membrane protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ginm1 PE=4 SV=1 CANONICAL=A0A9J7FJ15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJ15-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ15/entry#A0A9J7FJ15-1", "sequence": { "sequence": "MEGALSAPLPVRLLLLVALPAAGWLTTSAPRPPSTAPQFVLQDGIRINVTTLKDNGEVSKEQVVLNITYENGQVYVNDLPVNSGVTRISCQTLIVKSENLENLEEKEYFGIVTVRILVHEWPMTSGSSSQLIVIQEEVVEIDGRQAQQKDVIEIDILVKNQRILRHSNFSLPLEESMLYSLSQNSDILFTLPNFSKKVGSVTSLQTTSHYLIGSVETTVEGNALPGKLPETPLRAEPPSSYKVMCQWMEKLRRALCGLWGSVFPVLFMFLNVMVVGVLGAAGVIAMLKVLCPVYENKGILQVDKMNVIPVVPTILYPEGSEKTEEKLKDKMCI", "length": 333, "header": "tr|A0A9J7FJ15-1|A0A9J7FJ15_CRIGR Isoform 1 of Glycoprotein integral membrane protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ginm1 PE=4 SV=1 CANONICAL=A0A9J7FJ15-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027267616" }, "gene_names": [ { "name": "Msantd2", "type": "recommended", "evidence": [ { "id": "A0A9J7FVP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3" } ] }, { "name": "Msantd2", "type": "synonym", "evidence": [ { "id": "XP_027267616", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267616" } ] } ], "protein_names": [ { "name": "Myb/SANT-like DNA-binding domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FVP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#names_and_taxonomy" } ] }, { "name": "myb/SANT-like DNA-binding domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027267616", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267616" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267616", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267616" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Msantd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769065", "url": "https://www.ncbi.nlm.nih.gov/gene/100769065", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769065", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769065", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVP3", "url": "https://www.orthodb.org/?gene=A0A9J7FVP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46933:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46933:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13837", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13837", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267616", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267616", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0H9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKTLRRCYSRVKEHGVGKRKSSYTFEQLEQVFGQGGWDAQPCQPVLINSSGLYQELESDGSTMEDYSQEDWGNHSQDLHGYPTDQELDEMPVSKRTLKIKQESSEEAQKRDTMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSPGLYAIGYEECIERPLSPDVERQALDPGKEGRVGLETLSAQASLQVEVEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 647, "header": "tr|A0A9J7FVP3-1|A0A9J7FVP3_CRIGR Isoform 1 of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#A0A8C2N0H9-1", "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKELESDGSTMEDYSQEDWGNHSQDLHGYPTDQELDEMPVSKRTLKIKQESSEEAQKRDTMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSPGLYAIGYEECIERPLSPDVERQALDPGKEGRVGLETLSAQASLQVEVEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 595, "header": "tr|A0A8C2N0H9-1|A0A9J7FVP3_CRIGR Computationally mapped isoform of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#A0A9J7FVP3-1", "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKTLRRCYSRVKEHGVGKRKSSYTFEQLEQVFGQGGWDAQPCQPVLINSSGLYQELESDGSTMEDYSQEDWGNHSQDLHGYPTDQELDEMPVSKRTLKIKQESSEEAQKRDTMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSPGLYAIGYEECIERPLSPDVERQALDPGKEGRVGLETLSAQASLQVEVEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 647, "header": "tr|A0A9J7FVP3-1|A0A9J7FVP3_CRIGR Isoform 1 of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#A0A9J7GU52-1", "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKMKCQFQREH", "length": 267, "header": "tr|A0A9J7GU52-1|A0A9J7GU52_CRIGR Computationally mapped isoform of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#A0A9J7GV47-1", "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKDFQSVLSKTC", "length": 268, "header": "tr|A0A9J7GV47-1|A0A9J7GV47_CRIGR Computationally mapped isoform of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3/entry#A0A9J7JN31-1", "sequence": { "sequence": "MPPPFPAPRYCAPGPRPEESGGRRRARGLKWRSAGRGSPPDRSSAPSARCEPLSPEPGPRAAPETAVAGCAGASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGTGSAAGSGTAASGGLGLGLGGRSAASSSVSFSPGGGGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKLVRCPDLNAVLQLWPHRC", "length": 276, "header": "tr|A0A9J7JN31-1|A0A9J7JN31_CRIGR Computationally mapped isoform of Myb/SANT-like DNA-binding domain-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Msantd2 PE=4 SV=1 CANONICAL=A0A9J7FVP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0H9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0H9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0H9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0H9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769065", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769065", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FVP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVP3" }, { "id": "PF13837", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb/SANT-like DNA-binding", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 286, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 }, { "start_pos": 329, "end_pos": 331 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FSS0-1", "uniprot_ac": "A0A9J7FSS0", "uniprot_id": "A0A9J7FSS0_CRIGR", "mass": { "chemical_mass": 100681.0, "monoisotopic_mass": 100681.0 }, "refseq": { "ac": "XP_027267481", "name": "protein PTHB1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267481" }, "gene_names": [ { "name": "Bbs9", "type": "recommended", "evidence": [ { "id": "A0A9J7FSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ] }, { "name": "Bbs9", "type": "synonym", "evidence": [ { "id": "XP_027267481", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267481" } ] } ], "protein_names": [ { "name": "Protein PTHB1 isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7FSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#names_and_taxonomy" } ] }, { "name": "protein PTHB1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027267481", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267481" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267481" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bbs9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0", "locus": {} } ], "crossref": [ { "id": "100768362", "url": "https://www.ncbi.nlm.nih.gov/gene/100768362", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026511", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026511", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055363", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055363", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768362", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768362", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSS0", "url": "https://www.orthodb.org/?gene=A0A9J7FSS0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20991", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20991", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20991:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20991:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14728", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14728", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23338", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23338", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23339", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23339", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267481", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N082", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N082", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N082-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N082-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N216", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N216", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N216-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N216-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPGGCTPIPESDTEERSPEESAELFTNHKHLIAETPVPEVAALQGVLE", "length": 902, "header": "tr|A0A9J7FSS0-1|A0A9J7FSS0_CRIGR Isoform 1 of Protein PTHB1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N082-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A8C2N082-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPGGCTPIPESDTEERSPEESAELFTNHKHLIAETPVPEVAALQGVLE", "length": 885, "header": "tr|A0A8C2N082-1|A0A8C2N082_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N216-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A8C2N216-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPGGCTPIPESDTEERSPEESAELFTNHKHLIAETPVPEVAALQGVLE", "length": 880, "header": "tr|A0A8C2N216-1|A0A9J7FSS0_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FSB2-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPGGCTPIPESDTEERSPEESAELFTNHKHLIAETPVPEVAALQGVLE", "length": 897, "header": "tr|A0A9J7FSB2-1|A0A9J7FSB2_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FSS0-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPGGCTPIPESDTEERSPEESAELFTNHKHLIAETPVPEVAALQGVLE", "length": 902, "header": "tr|A0A9J7FSS0-1|A0A9J7FSS0_CRIGR Isoform 1 of Protein PTHB1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FT44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FT44-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQI", "length": 722, "header": "tr|A0A9J7FT44-1|A0A9J7FT44_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FTJ2-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELVAVLQSQSQTQRKDHQKSPQNCLPTTSTSLQRPPCLKLQPSKEFWNSQSQAN", "length": 834, "header": "tr|A0A9J7FTJ2-1|A0A9J7FTJ2_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FVI1-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPVVAK", "length": 860, "header": "tr|A0A9J7FVI1-1|A0A9J7FVI1_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7FXJ1-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQGSGWISDILEYEN", "length": 734, "header": "tr|A0A9J7FXJ1-1|A0A9J7FXJ1_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X12 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GY14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7GY14-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQ", "length": 721, "header": "tr|A0A9J7GY14-1|A0A9J7GY14_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X14 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0/entry#A0A9J7JNR4-1", "sequence": { "sequence": "MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSGNGQDKIIVGSFMGYLRIFNPHAVKTGDGPQAEDLLLEVQLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQIKLMYEHHLQRTACNMTYGPFGGIKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQETEQQKLGSGKRLVVDWTLNIGEQALDICIIPFNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSVSEGTINTLIGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGSLHFPDYSQALPCPGCLCFSDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPKVESRELNYDELDVELKELQRIIKDVKSQGVWPMTEREEDLKVFAVVSSSLDSVSQATNIEVGTDSVPSITVKITLQNRVVLQKVKLSVYVQPPLVLTCDQFTFDFAVPDMTSVAAFSVYLKKNYIPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASQKLTIDTNKSPVSLPILFPDFASHSDDDQINVMGFRLLGGSRVTLLASRTSQRYRIQSEQFEDLWLITNELILRLLEYFEKQGIKDFACSFSGCIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVEENQDRLLQSSAGLRSATHLLILLVRLWQKLSADQTAILEAAFLPLQEDTQELGWEETVDAAIAHLLKTCLSKSSKEQALSLSSQLTIPKDTSRLKKHITLLCDRLAKGGRLCLSTDAAAPQALVMPDALHLWSSGHPNEILPAVLLDDQLRADR", "length": 884, "header": "tr|A0A9J7JNR4-1|A0A9J7JNR4_CRIGR Computationally mapped isoform of Protein PTHB1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Bbs9 PE=4 SV=1 CANONICAL=A0A9J7FSS0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N216", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N216" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N216", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N216" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768362", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768362", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "BBSome", "id": "GO:0034464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034464", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "ciliary membrane", "id": "GO:0060170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060170", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "pericentriolar material", "id": "GO:0000242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000242", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "ciliary tip", "id": "GO:0097542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097542", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "fat cell differentiation", "id": "GO:0045444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045444", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" }, { "name": "protein localization to cilium", "id": "GO:0061512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061512", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" }, { "id": "PF23339", "database": "Pfam", "url": 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N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 380, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" }, { "id": "PF23338", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23338" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PTHB1 hairpin", "eco_id": "ECO_0000259", "start_pos": 656, "end_pos": 758, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS0" }, { "id": "PF23337", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23337" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PTHB1 platform", "eco_id": "ECO_0000259", "start_pos": 546, "end_pos": 653, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 569, "end_pos": 571 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FRK0-1", "uniprot_ac": "A0A9J7FRK0", "uniprot_id": "A0A9J7FRK0_CRIGR", "mass": { "chemical_mass": 23696.0, "monoisotopic_mass": 23696.0 }, "refseq": { "ac": "XP_016834946", "name": "transmembrane protein 134 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834946" }, "gene_names": [ { "name": "Tmem134", "type": "recommended", "evidence": [ { "id": "A0A9J7FRK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0" } ] }, { "name": "Tmem134", "type": "synonym", "evidence": [ { "id": "XP_016834946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834946" } ] } ], "protein_names": [ { "name": "Transmembrane protein 134 isoform X9", "type": "synonym", "evidence": [ { "id": "A0A9J7FRK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 134 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016834946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834946" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 67 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614797.1) and transcript sequence (IACG01051095.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016834946.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834946", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834946" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem134", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FRK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FRK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764493", "url": "https://www.ncbi.nlm.nih.gov/gene/100764493", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764493", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764493", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FRK0", "url": "https://www.orthodb.org/?gene=A0A9J7FRK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13558", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13558", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13558:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13558:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016834946", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834946", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFR0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNU3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K541", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K541", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K541-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K541-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 214, "header": "tr|A0A9J7FRK0-1|A0A9J7FRK0_CRIGR Isoform 1 of Transmembrane protein 134 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A8C2QFR0-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 195, "header": "tr|A0A8C2QFR0-1|A0A9J7FRK0_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7FNU3-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 180, "header": "tr|A0A9J7FNU3-1|A0A9J7FNU3_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X13 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FP17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7FP17-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDGAQASPESDGGVSTSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 165, "header": "tr|A0A9J7FP17-1|A0A9J7FP17_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X15 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7FRK0-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 214, "header": "tr|A0A9J7FRK0-1|A0A9J7FRK0_CRIGR Isoform 1 of Transmembrane protein 134 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7FRL4-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 199, "header": "tr|A0A9J7FRL4-1|A0A9J7FRL4_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X10 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7FTE8-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTSWTQHPLIQKNRRVVLASFLLLLLGLVLILVGVGLEVAPSPGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 184, "header": "tr|A0A9J7FTE8-1|A0A9J7FTE8_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X12 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7JI74-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTSWTQHPLIQKNRRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFICCAVKGHRGFQFFYLPYFEK", "length": 169, "header": "tr|A0A9J7JI74-1|A0A9J7JI74_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X14 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K541-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0/entry#A0A9J7K541-1", "sequence": { "sequence": "MSGTRPQFSIDDAFELTLEDAGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQREVKRPKPSNLSEPCVLVQNLENDEDGAQASPESDGGVSTRDSGHMSIRSSQWSFSTISSTTQHSYNACCSWTQHPLIQKNRRVVLASFLLLLLGLAISQGLPSMLP", "length": 165, "header": "tr|A0A9J7K541-1|A0A9J7K541_CRIGR Computationally mapped isoform of Transmembrane protein 134 isoform X16 OS=Cricetulus griseus OX=10029 GN=Tmem134 PE=3 SV=1 CANONICAL=A0A9J7FRK0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFR0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFR0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFR0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFR0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764493", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764493", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FUP9-1", "uniprot_ac": "A0A9J7FUP9", "uniprot_id": "A0A9J7FUP9_CRIGR", "mass": { "chemical_mass": 15459.0, "monoisotopic_mass": 15459.0 }, "refseq": { "ac": "XP_027265475", "name": "protein CTLA-2-beta isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265475" }, "gene_names": [ { "name": "LOC100756494", "type": "recommended", "evidence": [ { "id": "A0A9J7FUP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9" } ] }, { "name": "LOC100756494", "type": "synonym", "evidence": [ { "id": "XP_027265475", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265475" } ] } ], "protein_names": [ { "name": "Protein CTLA-2-beta isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FUP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9/entry#names_and_taxonomy" } ] }, { "name": "protein CTLA-2-beta isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027265475", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265475" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265475" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756494", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9", "locus": {} } ], "crossref": [ { "id": "100756494", "url": "https://www.ncbi.nlm.nih.gov/gene/100756494", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756494", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756494", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FUP9", "url": "https://www.orthodb.org/?gene=A0A9J7FUP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF08246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265475", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QIR0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAALSPDPSLDAEWEEWKMKFEKTYSPDEERYRRSVWEEEKKKVEKHNAEYEQGKTSFFMGLNEFSDMTFEEFRKMCCGNVVWTEEELDCDIHKYKDLRKDNVTPERDQEPSTSRCDQHDGGKAGQGVK", "length": 131, "header": "tr|A0A9J7FUP9-1|A0A9J7FUP9_CRIGR Isoform 1 of Protein CTLA-2-beta isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100756494 PE=4 SV=1 CANONICAL=A0A9J7FUP9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QIR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9/entry#A0A8C2QIR0-1", "sequence": { "sequence": "MASAALSPDPSLDAEWEEWKMKFEKTYSPDEERYRRSVWEEEKKKVEKHNAEYEQGKTSFFMGLNEFSDMTFEEFRKMCCGNVVWTEEELDCDIHKYKDLRKDNVTPERDQPE", "length": 113, "header": "tr|A0A8C2QIR0-1|A0A9J7FUP9_CRIGR Computationally mapped isoform of Protein CTLA-2-beta isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100756494 PE=4 SV=1 CANONICAL=A0A9J7FUP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUP9/entry#A0A9J7FUP9-1", "sequence": { "sequence": "MASAALSPDPSLDAEWEEWKMKFEKTYSPDEERYRRSVWEEEKKKVEKHNAEYEQGKTSFFMGLNEFSDMTFEEFRKMCCGNVVWTEEELDCDIHKYKDLRKDNVTPERDQEPSTSRCDQHDGGKAGQGVK", "length": 131, "header": "tr|A0A9J7FUP9-1|A0A9J7FUP9_CRIGR Isoform 1 of Protein CTLA-2-beta isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100756494 PE=4 SV=1 CANONICAL=A0A9J7FUP9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267075" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tpm1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56", "locus": {} } ], "crossref": [ { "id": "A0A9J7FS56", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FS56", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770615", "url": "https://www.ncbi.nlm.nih.gov/gene/100770615", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770615", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770615", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FS56", "url": "https://www.orthodb.org/?gene=A0A9J7FS56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19269", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19269", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00261", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00261", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267075", "database": 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GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7FU54-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSM", "length": 248, "header": "tr|A0A9J7FU54-1|A0A9J7FU54_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X3 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7FUQ8-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKLALNED", "length": 245, "header": "tr|A0A9J7FUQ8-1|A0A9J7FUQ8_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X8 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7FUY3-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKLALNED", "length": 245, "header": "tr|A0A9J7FUY3-1|A0A9J7FUY3_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X9 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7FW47-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSM", "length": 248, "header": "tr|A0A9J7FW47-1|A0A9J7FW47_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X6 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H023-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7H023-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI", "length": 248, "header": "tr|A0A9J7H023-1|A0A9J7H023_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X4 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56/entry#A0A9J7JNF5-1", "sequence": { "sequence": "MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELNNM", "length": 248, "header": "tr|A0A9J7JNF5-1|A0A9J7JNF5_CRIGR Computationally mapped isoform of Tropomyosin alpha-1 chain isoform X5 OS=Cricetulus griseus OX=10029 GN=Tpm1 PE=3 SV=1 CANONICAL=A0A9J7FS56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM60" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM60" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770615", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770615", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FRZ5-1", "uniprot_ac": "A0A9J7FRZ5", "uniprot_id": "A0A9J7FRZ5_CRIGR", "mass": { "chemical_mass": 100586.0, "monoisotopic_mass": 100586.0 }, "refseq": { "ac": "XP_007644752", "name": "cell cycle progression protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644752" }, "gene_names": [ { "name": "Ccpg1", "type": "recommended", "evidence": [ { "id": "A0A9J7FRZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5" } ] }, { "name": "Ccpg1", "type": "synonym", "evidence": [ { "id": "XP_007644752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644752" } ] } ], "protein_names": [ { "name": "Cell cycle progression protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FRZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5/entry#names_and_taxonomy" } ] }, { "name": "cell cycle progression protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007644752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644752" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613582.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644752" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccpg1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FRZ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FRZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768292", "url": "https://www.ncbi.nlm.nih.gov/gene/100768292", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768292", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768292", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LDAFHHW", "url": "https://omabrowser.org/oma/group/LDAFHHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRZ5", "url": "https://www.orthodb.org/?gene=A0A9J7FRZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28638", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28638", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28638:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28638:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27631", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27631", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27636", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27636", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644752", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QMG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K871", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K871", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K871-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K871-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSENSSDSDSSCGWTVINHEGSDVEIMNSATASDNCELTLECSSLEQEELQVLHVGTGGGESIANSMLSVEETRLLSVGETKSAIEVEEATSPEDNMYLGTTSDDSDIVTLEPPKLEEMGNQEVIIKEAPNSEDFNMGSSSSSQYTFCQPESVFSSQPSDEESSSDDTSHEPSPVPRRRRNRKKTVSVSESEEPPLAEPEDEPSKEPSKRHFSGGLNKCVILALVIAVSMGFGHFYGTIQIQKHHQLVRKIHRDELTDMKDYLSQCQQEQESFLDSKSLKENLERCWTVTDAEKVTFETQKKNLAAENQYLRISLEKEEKALSSLQEELRRLREQIRLLEDKGTSSQLVKENQALQQNLEVEKEKTNSFLNERETLLEEAKMLKRDLERERLTAMALRAELEQLGPCQAQDHTDSPNVQTEEKEVVLLQQRLAELEQKLTFEQQRSDLWERLYVEAKDQNGKLETEGRKRGSRGNPRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFGPSKEAAAEKPRTAYGYSSYSLHEALNQKQNCRGPSAQSKGGREKPSHTEESRKNANSDTHKAKFDFRDTHSTRRVFPGMFECAGQESGSSVNAASPVRINDFRQLIQWYLLNELDTFHHWKELDQFISPFFPNGVFRHDQKLFTDFVDAVKGYLKGIKEYQVEDDSLEKLDRYIYRHFGHIFALPFGPSRPDKKQQRMVNIENSRHRKQEQKHLHPQPYKREALGSTCNQSITEFCLHCKGPHNQMYQVFRPVGDALVRAEMQPNGRAIQALLTKRSEEICCPWSIATLRLSTTCCHNAWETDSSSTGFCYVPWDCWRIVYLSANI", "length": 880, "header": "tr|A0A9J7FRZ5-1|A0A9J7FRZ5_CRIGR Isoform 1 of Cell cycle progression protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccpg1 PE=4 SV=1 CANONICAL=A0A9J7FRZ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QMG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5/entry#A0A8C2QMG0-1", "sequence": { "sequence": "MSENSSDSDSSCGWTVINHEGSDVEIMNSATASDNCELTLECSSLEQEELQVLHVGTGGGESIANSMLSVEETRLLSVGETKSAIEVEEATSPEDNMYLGTTSDDSDIVTLEPPKLEEMGNQEVIIKEAPNSEDFNMGSSSSSQYTFCQPESVFSSQPSDEESSSDDTSHEPSPVPRRRRNRKKTVSVSESEEPPLAEPEDEPSKEPSKRHFSGGLNKCVILALVIAVSMGFGHFYGTIQIQKHHQLVRKIHRDELTDMKDYLSQCQQEQESFLDSKSLKENLERCWTVTDAEKVTFETQKKNLAAENQYLRISLEKEEKALSSLQEELRRLREQIRLLEDKGTSSQLVKENQALQQNLEVEKEKTNSFLNERETLLEEAKMLKRDLERERLTAMALRAELEQLGPCQAQDHTDSPNVQTEEKEVVLLQQRLAELEQKLTFEQQRSDLWERLYVEAKDQNGKLETEGRKRGSRGNPRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFGPSKEAAAEKPRTAYGYSSYSLHEALNQKQNCRGPSAQSKGGREKPSHTEESRKNANSDTHKAKFDFRDTHSTRRVFPGMFECAGQESGSSVNAASPVRINDFRQLIQWYLLNELDTFHHWKELDQFISPFFPNGVFRHDQKLFTDFVDAVKGYLKGIKEYQVEDDSLEKLDRYIYRHFGHIFALPFGPSRPDKKQQRMVNIENSRHRKQEQKHLHPQPYKREEPIGL", "length": 781, "header": "tr|A0A8C2QMG0-1|A0A9J7FRZ5_CRIGR Computationally mapped isoform of Cell cycle progression protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccpg1 PE=4 SV=1 CANONICAL=A0A9J7FRZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5/entry#A0A9J7FRZ5-1", "sequence": { "sequence": "MSENSSDSDSSCGWTVINHEGSDVEIMNSATASDNCELTLECSSLEQEELQVLHVGTGGGESIANSMLSVEETRLLSVGETKSAIEVEEATSPEDNMYLGTTSDDSDIVTLEPPKLEEMGNQEVIIKEAPNSEDFNMGSSSSSQYTFCQPESVFSSQPSDEESSSDDTSHEPSPVPRRRRNRKKTVSVSESEEPPLAEPEDEPSKEPSKRHFSGGLNKCVILALVIAVSMGFGHFYGTIQIQKHHQLVRKIHRDELTDMKDYLSQCQQEQESFLDSKSLKENLERCWTVTDAEKVTFETQKKNLAAENQYLRISLEKEEKALSSLQEELRRLREQIRLLEDKGTSSQLVKENQALQQNLEVEKEKTNSFLNERETLLEEAKMLKRDLERERLTAMALRAELEQLGPCQAQDHTDSPNVQTEEKEVVLLQQRLAELEQKLTFEQQRSDLWERLYVEAKDQNGKLETEGRKRGSRGNPRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFGPSKEAAAEKPRTAYGYSSYSLHEALNQKQNCRGPSAQSKGGREKPSHTEESRKNANSDTHKAKFDFRDTHSTRRVFPGMFECAGQESGSSVNAASPVRINDFRQLIQWYLLNELDTFHHWKELDQFISPFFPNGVFRHDQKLFTDFVDAVKGYLKGIKEYQVEDDSLEKLDRYIYRHFGHIFALPFGPSRPDKKQQRMVNIENSRHRKQEQKHLHPQPYKREALGSTCNQSITEFCLHCKGPHNQMYQVFRPVGDALVRAEMQPNGRAIQALLTKRSEEICCPWSIATLRLSTTCCHNAWETDSSSTGFCYVPWDCWRIVYLSANI", "length": 880, "header": "tr|A0A9J7FRZ5-1|A0A9J7FRZ5_CRIGR Isoform 1 of Cell cycle progression protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccpg1 PE=4 SV=1 CANONICAL=A0A9J7FRZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5/entry#A0A9J7GZU0-1", "sequence": { "sequence": "MNSATASDNCELTLECSSLEQEELQVLHVGTGGGESIANSMLSVEETRLLSVGETKSAIEVEEATSPEDNMYLGTTSDDSDIVTLEPPKLEEMGNQEVIIKEAPNSEDFNMGSSSSSQYTFCQPESVFSSQPSDEESSSDDTSHEPSPVPRRRRNRKKTVSVSESEEPPLAEPEDEPSKEPSKRHFSGGLNKCVILALVIAVSMGFGHFYGTIQIQKHHQLVRKIHRDELTDMKDYLSQCQQEQESFLDSKSLKENLERCWTVTDAEKVTFETQKKNLAAENQYLRISLEKEEKALSSLQEELRRLREQIRLLEDKGTSSQLVKENQALQQNLEVEKEKTNSFLNERETLLEEAKMLKRDLERERLTAMALRAELEQLGPCQAQDHTDSPNVQTEEKEVVLLQQRLAELEQKLTFEQQRSDLWERLYVEAKDQNGKLETEGRKRGSRGNPRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFGPSKEAAAEKPRTAYGYSSYSLHEALNQKQNCRGPSAQSKGGREKPSHTEESRKNANSDTHKAKFDFRDTHSTRRVFPGMFECAGQESGSSVNAASPVRINDFRQLIQWYLLNELDTFHHWKELDQFISPFFPNGVFRHDQKLFTDFVDAVKGYLKGIKEYQVEDDSLEKLDRYIYRHFGHIFALPFGPSRPDKKQQRMVNIENSRHRKQEQKHLHPQPYKREALGSTCNQSITEFCLHCKGPHNQMYQVFRPVGDALVRAEMQPNGRAIQALLTKRSEEICCPWSIATLRLSTTCCHNAWETDSSSTGFCYVPWDCWRIVYLSANI", "length": 854, "header": "tr|A0A9J7GZU0-1|A0A9J7GZU0_CRIGR Computationally mapped isoform of Cell cycle progression protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccpg1 PE=4 SV=1 CANONICAL=A0A9J7FRZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K871-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5/entry#A0A9J7K871-1", "sequence": { "sequence": "MSENSSDSDSSCGWTVINHEGSDVEIMNSATASDNCELTLECSSLEQEELQVLHVGTGGGESIANSMLSVEETRLLSVGETKSAIEVEEATSPEDNMYLGTTSDDSDIVTLEPPKLEEMGNQEVIIKEAPNSEDFNMGSSSSSQYTFCQPESVFSSQPSDEESSSDDTSHEPSPVPRRRRNRKKTVSVSESEEPPLAEPEDEPSKEPSKRHFSGGLNKCVILALVIAVSMGFGHFYGTIQIQKHHQLVRKIHRDELTDMKDYLSQCQQEQESFLDSKSLKENLERCWTVTDAEKVTFETQKKNLAAENQYLRISLEKEEKALSSLQEELRRLREQIRLLEDKGTSSQLVKENQALQQNLEVEKEKTNSFLNERETLLEEAKMLKRDLERERLTAMALRAELEQLGPCQAQDHTDSPNVQTEEKEVVLLQQRLAELEQKLTFEQQRSDLWERLYVEAKDQNGKLETEGRKRGSRGNPRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFGPSKEAAAEKPRTAYGYSSYSLHEALNQKQNCRGPSAQSKGGREKPSHTEESRKNANSDTHKAKFDFRDTHSTRRVFPGMFECAGQESGSSVNAASPVRINDFRQLIQWYLLNELDTFHHWKELDQFISPFFPNGVFRHDQKLFTDFVDAVKGYLKGIKEYQVEDDSLEKLDRYIYRHFGHIFALPFGPSRPDKKQQRMVNIENSRHRKQEQKHLHPQPYKREGLKRFAVRGA", "length": 786, "header": "tr|A0A9J7K871-1|A0A9J7K871_CRIGR Computationally mapped isoform of Cell cycle progression protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccpg1 PE=4 SV=1 CANONICAL=A0A9J7FRZ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMG0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMG0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768292", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768292", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZKK0-1", "protein_name": "Cell cycle progression 1", "gene_name": "Ccpg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSENSSDSDSSCGWTVINHEGSDIEIVNSATASDNGEPTPEYSSPDQEELQVLPEGHGGGESSANITSSVGETMLSLVRETKSATEVEETTSPEDNVYFGTTSDDSDIVTLEPPKLEEMGIQEVAIIKDDLNLGSSSSSQYTFCQPEPEKWWEKLWKIPECIRGWDDQLRLRVPSQLALQVFSSQHSDEESSSDDTSHEPSPAPRRRRNRKKTVSISESEEPLLPEPEDEPSKETSKRHFSGGLNKCIILALVIAISMGFGHFYGKNEGNKGKGTIQIQKRQQLGRKVHEDELNSVKDYLFQCQQEQECALDFKTQSSKENLERCWTTTESEKVTFETQNNNLAAENKYLRLSLEKEEKTLSSLQEELRQLKEQIRLLEDKGTSTQLVRENQVLKRYLEVEKQKTNSFLNERVTLLEEARVLKRDLERERLTAMALRAELEQLAPRQAQGHADSPSVQRGEKEIVLLQQRLAELEQKLSFEQQRSDLWERLYVEAKDQHGKQEADGRKRGSKGSHRVKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFRASKEEATEKPRTAYSYSSYSEREAPDQNQNCRGPSAQRDRGREKPSHSEEIRQTTNSYTYKAKFDCRGTHSTRKVCSGMFECAGQESISPVNQAGPVRMNDFKQLIHWYLLNELDTFHHWKELDQFISPFFLNGVFRHDQKPFADFVDDVKGYLKSIKEYQVEDDNLEKLDGCIYRHFGHVFALPFGPSRPDKKQRMVNIENSRHRKQEQKHLHPQPCKREGKWYKYGRANGRHTANLEIELGQLPFDPKY", "length": 844 }, "evidence": [ { "id": "A0A9J7FRZ5", "url": "https://omabrowser.org/oma/group/A0A9J7FRZ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5ZM60-1", "protein_name": "Cell cycle progression protein 1", "gene_name": "CCPG1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSENYSDSDSSCGWTVINHEGSDIETVTSENGSSNDNHEFVSEEYVSLQEVEQPIELQAQDSTDGEIPVVDNTLSALEETQTVPEERKEKVHDDSSCIGTISDDSDIVTLEAPKGEETPSQEEAPADGEEAPSSEDFNMGSSSSSQYAFSQPETVFPSQASDDESSSDETSNQSSPTVRRRRAKRRLISCSEAESGSPVGPEPEPPQEQQHKRQFSSGLNRCIILALVIAISMGFGHFYGTIQIQKRQQLLTKTRELKDDLYQCQQEQGDKVGSLKGDLATCLTSTEVEKKSFESQKKSLAAENQHLRESLEKEEKALVSLQEELRKLRQQIRNLEDKGTSTESIVMENQKLREHLEEEKQRNHNFRRQKETLFAEAQMLRRELDKERHVTEALKKELEQLSSRQTPDSVNDDDTLRENEEIETLRGRLVELEKKLNFEQQRSDLWEKLYVEAKDLTEKQEMNEKGQKRGAKGQSKSKKKSKESFFGSVKETFDVMKNSAKEFVRHHKEKIKQAKEAVKEKLKKFSDSVKSTFRHFKDTTKTILDEKEKKPNEKKYEANKKARTFYREHNLYENLKQSHYRRPNVPKDFRDGRRHHFTAFEKDTDSQKCLNDPLCSRKHQFDLKGCSGIFECANQEFVSLFNRVSDPIGVDEFNRLMRKYLQQVVHNFRHWRELENFINKFFHNGFFIHDQMLFTDFVNDVKDYLEDMKEYQNKNEKVFDDLDKYIYRYYFQYDNSPQYGPSRPKRPSFTQTENPRHEKQAQKYHHRNKREGKWHKHGRTNGRHMANLEIELGQLPFDPKY", "length": 801 }, "evidence": [ { "id": "A0A9J7FRZ5", "url": "https://omabrowser.org/oma/group/A0A9J7FRZ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q640L3-1", "protein_name": "Cell cycle progression protein 1", "gene_name": "Ccpg1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSESSSDSDSSCGWTVINHEGSDIEIVNSATASDNCGLTLECSLVEQEELPVLYVGHGGEESSANNTSSVGETMLSSMRETKSAAEVEEAPSPEDNVYFGTTSDDSDIVTLEPPKLEEMGNQEVTIQEAPSSDDLNMGSSSSSQYAFCQPEPVFSSQPSDEESSSDDTSHEPSPAPRRRRNRKKTVSISESEEPPLAEPEDEPSKEPSKRHFSRGLNKCVILALVIAVSMGFGHFYGTIQIQKQLVRKTHEDELDGVKGYLSQRKQEQESFLDFKSLKENLERCWTVTESEKITFETQKKNLAAENQYLRISLEKEEQALSSLQEELRQLREQIRLLEDKGTSTQLVRENQVLKQYLEVEKQKTDSFLREREMLLEEARMLKRDLEREQLTAMALRAELEQFIPGQAQSRAESPSVQTEEKEVGLLQQRLAELEQKLIFEQQRSDLWERLYVEAKDQHGKQETDGRKRGSRGSHRAKSKSKETFLGTVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFRAPKEAATEKTRTAYSYSSYSQQEAPNQNQNCRRPSAQRDGGREKPSHSEEIRKNANSYTYKAKSDCRGTHSTRRVCSGMFECAGQEAISPVNKASPVRMNDFKQLIHWYLLNELETFHHWKELDQFISPFFPNGVFRHDQQLFADFVDDVKGYLKSIKEYRVEDGNLEKLDGCIYRHFGHVFALPFGPRSVYIKPCYYNSF", "length": 753 }, "evidence": [ { "id": "A0A9J7FRZ5", "url": "https://omabrowser.org/oma/group/A0A9J7FRZ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ULG6-1", "protein_name": "Cell cycle progression protein 1", "gene_name": "CCPG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGESSQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQEVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRARKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQIQKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQKTNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEEEKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTEKKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNKSKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHFKEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQIIQRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDGVFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL", "length": 757 }, "evidence": [ { "id": "A0A9J7FRZ5", "url": "https://omabrowser.org/oma/group/A0A9J7FRZ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 499, "end_pos": 501, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" }, { "start_pos": 783, "end_pos": 785, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 499, "end_pos": 501 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 783, "end_pos": 785 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FR49-1", "uniprot_ac": "A0A9J7FR49", "uniprot_id": "A0A9J7FR49_CRIGR", "mass": { "chemical_mass": 31202.0, "monoisotopic_mass": 31202.0 }, "refseq": { "ac": "XP_007649996", "name": "dnaJ homolog subfamily C member 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649996" }, "gene_names": [ { "name": "Dnajc4", "type": "recommended", "evidence": [ { "id": "A0A9J7FR49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49" } ] }, { "name": "Dnajc4", "type": "synonym", "evidence": [ { "id": "XP_007649996", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649996" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily C member 4", "type": "recommended", "evidence": [ { "id": "A0A9J7FR49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily C member 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007649996", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649996" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615068.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649996" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FR49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajc4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49", "locus": {} } ], "crossref": [ { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756870", "url": "https://www.ncbi.nlm.nih.gov/gene/100756870", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756870", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756870", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCRLWPY", "url": "https://omabrowser.org/oma/group/LCRLWPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QMZ2", "url": "https://www.orthodb.org/?gene=A0A8C2QMZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FNB7", "url": "https://www.orthodb.org/?gene=A0A9J7FNB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FR49", "url": "https://www.orthodb.org/?gene=A0A9J7FR49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FSX2", "url": "https://www.orthodb.org/?gene=A0A9J7FSX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44825", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44825", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44825:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44825:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649996", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QMZ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSLLLLLPPRLCRLWPYSPPTRLLSAATEQRSSPSNYYELLGVHPDASAEEVKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRKYDHQLHSASPPESSGTRAQPKYTQETHSSWEPPNAKYWAQFHRVRPQGPESRQQQHKHNQRVLGYCLLLMVAGMSLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARSVVLDLASVPVPELSGSLSRSIFSPGPTEPGFSRSGSRDRSLRKDPPRLQKALGSYPRIAALEGVT", "length": 274, "header": "tr|A0A9J7FR49-1|A0A9J7FR49_CRIGR Isoform 1 of DnaJ homolog subfamily C member 4 OS=Cricetulus griseus OX=10029 GN=Dnajc4 PE=4 SV=1 CANONICAL=A0A9J7FR49-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QMZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49/entry#A0A8C2QMZ2-1", "sequence": { "sequence": "MPSLLLLLPPRLCRLWPYSPPTRLLSAATEQRSSPSNYYELLGVHPDASAEEVKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRKYDHQLHSASPPESSGTRAQPKYTQETHSSWEPPNAKYWAQFHRVRPQGPESRQQQHKHNQRVLGYCLLLMVAGMSLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARANRARIQQERQQRPQPQKGPSPSPEGPGIVPQDSSP", "length": 244, "header": "tr|A0A8C2QMZ2-1|A0A9J7FR49_CRIGR Computationally mapped isoform of DnaJ homolog subfamily C member 4 OS=Cricetulus griseus OX=10029 GN=Dnajc4 PE=4 SV=1 CANONICAL=A0A9J7FR49-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49/entry#A0A9J7FNB7-1", "sequence": { "sequence": "MPSLLLLLPPRLCRLWPYSPPTRLLSAATEQRSSPSNYYELLGVHPDASAEEVKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRKYDHQLHSASPPESSGTRAQPKYTQETHRKLEQVHRSFMDEKDRIITAIYNDTRARARSVVLDLASVPVPELSGSLSRSIFSPGPTEPGFSRSGSRDRSLRKDPPRLQKALGSYPRIAALEGVT", "length": 220, "header": "tr|A0A9J7FNB7-1|A0A9J7FNB7_CRIGR Computationally mapped isoform of DnaJ homolog subfamily C member 4 OS=Cricetulus griseus OX=10029 GN=Dnajc4 PE=4 SV=1 CANONICAL=A0A9J7FR49-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49/entry#A0A9J7FR49-1", "sequence": { "sequence": "MPSLLLLLPPRLCRLWPYSPPTRLLSAATEQRSSPSNYYELLGVHPDASAEEVKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRKYDHQLHSASPPESSGTRAQPKYTQETHSSWEPPNAKYWAQFHRVRPQGPESRQQQHKHNQRVLGYCLLLMVAGMSLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARSVVLDLASVPVPELSGSLSRSIFSPGPTEPGFSRSGSRDRSLRKDPPRLQKALGSYPRIAALEGVT", "length": 274, "header": "tr|A0A9J7FR49-1|A0A9J7FR49_CRIGR Isoform 1 of DnaJ homolog subfamily C member 4 OS=Cricetulus griseus OX=10029 GN=Dnajc4 PE=4 SV=1 CANONICAL=A0A9J7FR49-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49/entry#A0A9J7FSX2-1", "sequence": { "sequence": "MPSLLLLLPPRLCRLWPYSPPTRLLSAATEQRSSPSNYYELLGVHPDASAEEVKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRKYDHQLHSASPPESSGTRAQPKYTQETHSSWEPPNAKYWAQFHRVRPQGPESRQQQHKHNQRVLGYCLLLMVAGMSLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARARIQQERQQRPQPQKGPSPSPEGPGIVPQDSSP", "length": 241, "header": "tr|A0A9J7FSX2-1|A0A9J7FSX2_CRIGR Computationally mapped isoform of DnaJ homolog subfamily C member 4 OS=Cricetulus griseus OX=10029 GN=Dnajc4 PE=4 SV=1 CANONICAL=A0A9J7FR49-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 236, "start_aa": "Thr", "end_pos": 236, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr236", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMZ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMZ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMZ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMZ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756870", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A600-1", "protein_name": "DnaJ homolog subfamily C member 4", "gene_name": "Dnajc4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWGPPFPSCPPAVVMPSLLLRLPLRLCRLWPCSPPTRLLTAATGQRPVPTNYYELLGVHPGASAEEIKRAFFTKSKELHPDRDPGNPALHSRFVELSEAYRVLSREESRRNYDHQLHSASPSKSSGSTAEPKYKQQTHSSPWETPNAEYWAQFHSVRPQEPESRKQQHKHNQRVLGYCLLLMVAGMGLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARANRARIQQKHQQRQPPTEPSLPPESSRIMPQDTSQ", "length": 260 }, "evidence": [ { "id": "A0A9J7FR49", "url": "https://omabrowser.org/oma/group/A0A9J7FR49/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D844-1", "protein_name": "DnaJ homolog subfamily C member 4", "gene_name": "Dnajc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSLLLQLPLRLCRLWPHSLSIRLLTAATGQRSVPTNYYELLGVHPGASAEEIKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRNYDHQLHSASPPKSSGSTAEPKYTQQTHSSWEPPNAQYWAQFHSVRPQGPESRKQQRKHNQRVLGYCLLLMVAGMGLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARANRARIQQERQQRQQPRAEPSLPPESSRIMPQDTSP", "length": 244 }, "evidence": [ { "id": "A0A9J7FR49", "url": "https://omabrowser.org/oma/group/A0A9J7FR49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NNZ3-1", "protein_name": "DnaJ homolog subfamily C member 4", "gene_name": "DNAJC4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPLLPLRLCRLWPRNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNPSLHSRFVELSEAYRVLSREQSRRSYDDQLRSGSPPKSPRTTVHDKSAHQTHSSWTPPNAQYWSQFHSVRPQGPQLRQQQHKQNKQVLGYCLLLMLAGMGLHYIAFRKVKQMHLNFMDEKDRIITAFYNEARARARANRGILQQERQRLGQRQPPPSEPTQGPEIVPRGAGP", "length": 241 }, "evidence": [ { "id": "A0A9J7FR49", "url": "https://omabrowser.org/oma/group/A0A9J7FR49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FR49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FR49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR49" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 102, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 236 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FU86-1", "uniprot_ac": "A0A9J7FU86", "uniprot_id": "A0A9J7FU86_CRIGR", "mass": { "chemical_mass": 33663.0, "monoisotopic_mass": 33663.0 }, "refseq": { "ac": "XP_007643564", "name": "transmembrane protein 45A-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643564" }, "gene_names": [ { "name": "LOC100757327", "type": "recommended", "evidence": [ { "id": "A0A9J7FU86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86" } ] }, { "name": "LOC100757327", "type": "synonym", "evidence": [ { "id": "XP_007643564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643564" } ] } ], "protein_names": [ { "name": "Transmembrane protein 45A-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FU86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 45A-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007643564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643564" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614098.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643564" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757327", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86", "locus": {} } ], "crossref": [ { "id": "A0A9J7FU86", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FU86", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757327", "url": "https://www.ncbi.nlm.nih.gov/gene/100757327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757327", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757327", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHTHGRD", "url": "https://omabrowser.org/oma/group/NHTHGRD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QN21", "url": "https://www.orthodb.org/?gene=A0A8C2QN21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FU86", "url": "https://www.orthodb.org/?gene=A0A9J7FU86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16007", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16007", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16007:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16007:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04819", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04819", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007643564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643564", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QN21", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QN21-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSFKGHALPGTFFILMGFWWSTKVILKYVYKKQTRTCYLSSKTFLRRAEIWEGVVAIIMALTGMVGEQFISGGPYLNLYKDGQWNQLLGWHHTTMYFFFGLQGVSQVICFTTNLFPTSLSKLMLSNAIFVESFIFYNHTHGREMLDVFVHQLLVFTTILAGLVTFIEFLTKNNVLLELLRSSLIILQGTWFWQVAFVLYPPSGSPEWNLSDIENKMFLTMCFCWHYASIFVITGLNYALITWLTSGPHLLRGWGVFRNSPRMQGKTLLRVSSHPEPTEDYCLFLFQKPSDA", "length": 292, "header": "tr|A0A9J7FU86-1|A0A9J7FU86_CRIGR Isoform 1 of Transmembrane protein 45A-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100757327 PE=3 SV=1 CANONICAL=A0A9J7FU86-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QN21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86/entry#A0A8C2QN21-1", "sequence": { "sequence": "MGSFKGHALPGTFFILMGFWWSTKVILKYVYKKQTRTCYLSSKTFLRRAEIWEGVVAIIMALTGMVGEQFISGGPYLNLYKDGQWNQLLGWHHTTMYFFFGLQGVSQVICFTTNLFPTSLSKLMLSNAIFVESFIFYNHTHGREMLDVFVHQLLVFTTILAGLVTFIEFLTKNNVLLELLRSSLIILQGTWFWQVAFVLYPPSGSPEWNLSDIENKMFLTMCFCWHYASIFVITGLNYALITWLVKSRLRKVCTSEVGLLKSAEREHESEEEV", "length": 273, "header": "tr|A0A8C2QN21-1|A0A9J7FU86_CRIGR Computationally mapped isoform of Transmembrane protein 45A-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100757327 PE=3 SV=1 CANONICAL=A0A9J7FU86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86/entry#A0A9J7FU86-1", "sequence": { "sequence": "MGSFKGHALPGTFFILMGFWWSTKVILKYVYKKQTRTCYLSSKTFLRRAEIWEGVVAIIMALTGMVGEQFISGGPYLNLYKDGQWNQLLGWHHTTMYFFFGLQGVSQVICFTTNLFPTSLSKLMLSNAIFVESFIFYNHTHGREMLDVFVHQLLVFTTILAGLVTFIEFLTKNNVLLELLRSSLIILQGTWFWQVAFVLYPPSGSPEWNLSDIENKMFLTMCFCWHYASIFVITGLNYALITWLTSGPHLLRGWGVFRNSPRMQGKTLLRVSSHPEPTEDYCLFLFQKPSDA", "length": 292, "header": "tr|A0A9J7FU86-1|A0A9J7FU86_CRIGR Isoform 1 of Transmembrane protein 45A-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100757327 PE=3 SV=1 CANONICAL=A0A9J7FU86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QN21", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN21" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QN21", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN21" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757327", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8D0QHM5-1", "protein_name": "Transmembrane protein 45A", "gene_name": "TMEM45A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNFTGHAVPGTFFYIMGIWWTIKCIMKYFFKKHKRTSYLGSKALFHRIEISEGTVLIVMAVSGMLGEQFFPGGPYLTLYDYKNSQWVQLLGWHHCTMYFFFGLVGVTNILCSTIRSLPASFAKLIFSNAFFVETFIFYNHTHGREMLDVYVHKLLVLAAFLTGLVAFMEIIARTNIAVELLRTSFVLLQGSWFWQIGFVLYPPSGGPAWNSVDHDNIMFLSICFCWHYVLAIIIIGAIYAFVTWLIESRLKRFFPSEVELLKNTEREQESEEEM", "length": 275 }, "evidence": [ { "id": "A0A9J7FU86", "url": "https://omabrowser.org/oma/group/A0A9J7FU86/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D4AAI6-1", "protein_name": "Transmembrane protein 45A", "gene_name": "Tmem45a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSFIGHALPGTFFIMMGFWWTTKNILKSVYKKHTRTCYLNSKTLLRRIEIWEGVVVVIMALTGIAGEQFISGGPALILYKDGQWNQILGWHHTTMYFFFGLQGVTQIVCFTTNALPLSLSKLMLANAIFVETFIFYNHTHGREMVDIFVHQLLSYTTTAAGLVAFMEFLTKNNVLLELVRSSLILLQGTWFWQVAFVLYPPKGRATWNLSDIGNKMFLSMCFCWHYASIVMLIGVIFALANWLVKSRLRKVCTSEVGLLKHVDREQESEEEV", "length": 273 }, "evidence": [ { "id": "A0A9J7FU86", "url": "https://omabrowser.org/oma/group/A0A9J7FU86/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q60774-1", "protein_name": "Transmembrane protein 45A", "gene_name": "Tmem45a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSFKGHALPGSFFFAMGFWWTMKNILKSVYKRQTRTCYLNSKTLLRRTEIWEGVVVLLMSLTGIAGEQFISGGPALILHKDGQWNQILGWHHTTMYLFFGLQGITQIICFTTNVLPLSSSKLMLSIAIFVETFMFYNHTHGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLYPPCGSATWNLSDIQNKMFLSMCFCWHYASILILIGVKYALANWLVKSRLRKGCTSEVGLLKHADREQESEEEV", "length": 273 }, "evidence": [ { "id": "A0A9J7FU86", "url": "https://omabrowser.org/oma/group/A0A9J7FU86/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWC5-1", "protein_name": "Transmembrane protein 45A", "gene_name": "TMEM45A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNFRGHALPGTFFFIIGLWWCTKSILKYICKKQKRTCYLGSKTLFYRLEILEGITIVGMALTGMAGEQFIPGGPHLMLYDYKQGHWNQLLGWHHFTMYFFFGLLGVADILCFTISSLPVSLTKLMLSNALFVEAFIFYNHTHGREMLDIFVHQLLVLVVFLTGLVAFLEFLVRNNVLLELLRSSLILLQGSWFFQIGFVLYPPSGGPAWDLMDHENILFLTICFCWHYAVTIVIVGMNYAFITWLVKSRLKRLCSSEVGLLKNAEREQESEEEM", "length": 275 }, "evidence": [ { "id": "A0A9J7FU86", "url": "https://omabrowser.org/oma/group/A0A9J7FU86/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 209, "end_pos": 211 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FII8-1", "uniprot_ac": "A0A9J7FII8", "uniprot_id": "A0A9J7FII8_CRIGR", "mass": { "chemical_mass": 105925.0, "monoisotopic_mass": 105925.0 }, "refseq": { "ac": "XP_027257721", "name": "bcl-2-associated transcription factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257721" }, "gene_names": [ { "name": "Bclaf1", "type": "recommended", "evidence": [ { "id": "A0A9J7FII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ] }, { "name": "Bclaf1", "type": "synonym", "evidence": [ { "id": "XP_027257721", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257721" } ] } ], "protein_names": [ { "name": "Bcl-2-associated transcription factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8/entry#names_and_taxonomy" } ] }, { "name": "bcl-2-associated transcription factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027257721", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257721" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257721", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257721" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bclaf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FII8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FII8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773081", "url": "https://www.ncbi.nlm.nih.gov/gene/100773081", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773081", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773081", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FII8", "url": "https://www.orthodb.org/?gene=A0A9J7FII8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257721", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257721", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTVAPQNAPREESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNPRDKEAPKEKGSEKGRAEGDWEDQEVLDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETGYIVERPSTAKDKHKEEDKGSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKGREQDHSRSSSSSASPSSPSSREEKDSKKEREDEFKAHHEMKDYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNTGPNNSNTTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE", "length": 920, "header": "tr|A0A9J7FII8-1|A0A9J7FII8_CRIGR Isoform 1 of Bcl-2-associated transcription factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf1 PE=3 SV=1 CANONICAL=A0A9J7FII8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8/entry#A0A9J7FHI6-1", "sequence": { "sequence": "MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTVAPQNAPREESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNPRDKEAPKEKGSEKGRAEGDWEDQEVLDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETGYIVERPSTAKDKHKEEDKGSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKGREQDHSRSSSSSASPSSPSSREEKDSKKEREDEFKAHHEMKDYSGFAGVSRPRGTFHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE", "length": 869, "header": "tr|A0A9J7FHI6-1|A0A9J7FII8_CRIGR Computationally mapped isoform of Bcl-2-associated transcription factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf1 PE=3 SV=1 CANONICAL=A0A9J7FII8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8/entry#A0A9J7FHS7-1", "sequence": { "sequence": "MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTVAPQNAPREESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNPRDKEAPKEKGSEKGRAEGDWEDQEVLDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETGYIVERPSTAKDKHKEEDKGSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKGREQDHSRSSSSSASPSSPSSREEKDSKKEREDEFKAHHEMKDYSGFAGVSRPRGTFHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE", "length": 871, "header": "tr|A0A9J7FHS7-1|A0A9J7FHS7_CRIGR Computationally mapped isoform of Bcl-2-associated transcription factor 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Bclaf1 PE=3 SV=1 CANONICAL=A0A9J7FII8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8/entry#A0A9J7FII8-1", "sequence": { "sequence": "MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTVAPQNAPREESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNPRDKEAPKEKGSEKGRAEGDWEDQEVLDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETGYIVERPSTAKDKHKEEDKGSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKGREQDHSRSSSSSASPSSPSSREEKDSKKEREDEFKAHHEMKDYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNTGPNNSNTTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE", "length": 920, "header": "tr|A0A9J7FII8-1|A0A9J7FII8_CRIGR Isoform 1 of Bcl-2-associated transcription factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf1 PE=3 SV=1 CANONICAL=A0A9J7FII8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JH46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8/entry#A0A9J7JH46-1", "sequence": { "sequence": "MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRSPAKTVAPQNAPREESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNPRDKEAPKEKGSEKGRAEGDWEDQEVLDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQGKSFATSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETGYIVERPSTAKDKHKEEDKGSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKGREQDHSRSSSSSASPSSPSSREEKDSKKEREDEFKAHHEMKDYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNTGPNNSNTTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDEEETMENNEEKKDRRKEEKE", "length": 918, "header": "tr|A0A9J7JH46-1|A0A9J7JH46_CRIGR Computationally mapped isoform of Bcl-2-associated transcription factor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Bclaf1 PE=3 SV=1 CANONICAL=A0A9J7FII8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHI6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHI6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773081", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773081", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 820, "end_pos": 822 }, { "start_pos": 823, "end_pos": 825 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FHQ7-1", "uniprot_ac": "A0A9J7FHQ7", "uniprot_id": "A0A9J7FHQ7_CRIGR", "mass": { "chemical_mass": 47375.0, "monoisotopic_mass": 47375.0 }, "refseq": { "ac": "XP_027257681", "name": "protein FAM81B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257681" }, "gene_names": [ { "name": "Fam81b", "type": "recommended", "evidence": [ { "id": "A0A9J7FHQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHQ7" } ] }, { "name": "Fam81b", "type": "synonym", "evidence": [ { "id": "XP_027257681", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257681" } ] } ], "protein_names": [ { "name": "Protein FAM81B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FHQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHQ7/entry#names_and_taxonomy" } ] }, { "name": "protein FAM81B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027257681", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257681" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027257681.1. 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This record is derived from a genomic sequence (NW_003615347.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027240099.1. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259572", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259572" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nptxr", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00152", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00152", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750799", "url": "https://www.ncbi.nlm.nih.gov/gene/100750799", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750799", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750799", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHX9", "url": "https://www.orthodb.org/?gene=A0A9J7FHX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19277:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19277:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259572", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259572", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDFASKDLKLGLQLGMLPVSHDAWAGFQVTNSYPLIRLWVFMMSRPCIDEVLGVAHAPGLPARNGCGVGPRPAPGERVGRGRRARLLLLPPPGLRAAAAAAAATSPVLAPAPALPGPAPRPRRRSCRGPSAPPPRFTLKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGTDNASAAGAPGPQRSLSALHGAGGSAGPSALPGEPAASVFPPPPGPLLSRFLCTPLAAACPSGTEQGDAAGERAELLLLQSTAEQLRQTALQQEARIRADRDTIRELTGKLGRCESGLPRGLQDAGPRRDTMADGAWDSPALLLELEDAVRALRDRIERIEQELPVRGNLSAPAPAVPTALHTKMDELEGQLLAKVLALEKERAALSHGSHQQRQEVEKELDALQGRVAELEHGSSAYSPPDAFRVSIPIRNNYMYARVRKALPELYAFTACMWLRSRSGGSGQGTPFSYSVPGQANEIVLLEAGLEPMELLINDKVAQLPLSLKDNNWHHICIVWTTRDGLWSAYQDGELRGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHVLTPAQVLGMANCTGPLMGNVLPWEDKLVETFGGAKKSTFDVCKGRAKA", "length": 627, "header": "tr|A0A9J7FHX9-1|A0A9J7FHX9_CRIGR Isoform 1 of Neuronal pentraxin receptor isoform X2 OS=Cricetulus griseus OX=10029 GN=Nptxr PE=4 SV=1 CANONICAL=A0A9J7FHX9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9/entry#A0A9J7FHX9-1", "sequence": { "sequence": "MSDFASKDLKLGLQLGMLPVSHDAWAGFQVTNSYPLIRLWVFMMSRPCIDEVLGVAHAPGLPARNGCGVGPRPAPGERVGRGRRARLLLLPPPGLRAAAAAAAATSPVLAPAPALPGPAPRPRRRSCRGPSAPPPRFTLKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGTDNASAAGAPGPQRSLSALHGAGGSAGPSALPGEPAASVFPPPPGPLLSRFLCTPLAAACPSGTEQGDAAGERAELLLLQSTAEQLRQTALQQEARIRADRDTIRELTGKLGRCESGLPRGLQDAGPRRDTMADGAWDSPALLLELEDAVRALRDRIERIEQELPVRGNLSAPAPAVPTALHTKMDELEGQLLAKVLALEKERAALSHGSHQQRQEVEKELDALQGRVAELEHGSSAYSPPDAFRVSIPIRNNYMYARVRKALPELYAFTACMWLRSRSGGSGQGTPFSYSVPGQANEIVLLEAGLEPMELLINDKVAQLPLSLKDNNWHHICIVWTTRDGLWSAYQDGELRGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHVLTPAQVLGMANCTGPLMGNVLPWEDKLVETFGGAKKSTFDVCKGRAKA", "length": 627, "header": "tr|A0A9J7FHX9-1|A0A9J7FHX9_CRIGR Isoform 1 of Neuronal pentraxin receptor isoform X2 OS=Cricetulus griseus OX=10029 GN=Nptxr PE=4 SV=1 CANONICAL=A0A9J7FHX9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FHX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHX9" }, { "id": "PS51828", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51828" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pentraxin (PTX)", "eco_id": "ECO_0000259", "start_pos": 419, "end_pos": 621, "start_aa": "Asp", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 590, "end_pos": 592 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FHY0-1", "uniprot_ac": "A0A9J7FHY0", "uniprot_id": "A0A9J7FHY0_CRIGR", "mass": { "chemical_mass": 35523.0, "monoisotopic_mass": 35523.0 }, "refseq": { "ac": "XP_027260797", "name": "olfactory receptor 2AG2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260797" }, "gene_names": [ { "name": "LOC100765900", "type": "recommended", "evidence": [ { "id": "A0A9J7FHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0" } ] }, { "name": "LOC100765900", "type": "synonym", "evidence": [ { "id": "XP_027260797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260797" } ] } ], "protein_names": [ { "name": "Olfactory receptor 2AG2", "type": "synonym", "evidence": [ { "id": "A0A9J7FHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2AG2", "type": "synonym", "evidence": [ { "id": "XP_027260797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260797" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260797" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765900", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHY0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHY0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15421", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15421", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765900", "url": "https://www.ncbi.nlm.nih.gov/gene/100765900", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765900", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHY0", "url": "https://www.orthodb.org/?gene=A0A9J7FHY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFWNSTLGSGFILVGILDDSGYPELLCAAITALYTLALTSNGLLLLVITMDAQLHVPMYFLLGQLSLMDLFLTSVITPKAILDFLLKDNTISFGGCALQMFLELAIGGAEDLLLAFMAYDRYVAICHPLKYTILMRPVVCWLMVTASWFLAFQMALGFTITTMHYSFCKSRQIRHLFCETPPLLKLACADTSNFELVVYLVGVLMLILPLTVIFFSYAWILFTVFYMPSNEGRKKALVTCSSHMTVVGMYYGALTVMYVIPSSYHNSKQENILSVFYTVVTPALNPLIYSLRNKEVTGALRRVLGNTCCHYTVHSK", "length": 317, "header": "tr|A0A9J7FHY0-1|A0A9J7FHY0_CRIGR Isoform 1 of Olfactory receptor 2AG2 OS=Cricetulus griseus OX=10029 GN=LOC100765900 PE=3 SV=1 CANONICAL=A0A9J7FHY0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHY0/entry#A0A9J7FHY0-1", "sequence": { "sequence": "MEFWNSTLGSGFILVGILDDSGYPELLCAAITALYTLALTSNGLLLLVITMDAQLHVPMYFLLGQLSLMDLFLTSVITPKAILDFLLKDNTISFGGCALQMFLELAIGGAEDLLLAFMAYDRYVAICHPLKYTILMRPVVCWLMVTASWFLAFQMALGFTITTMHYSFCKSRQIRHLFCETPPLLKLACADTSNFELVVYLVGVLMLILPLTVIFFSYAWILFTVFYMPSNEGRKKALVTCSSHMTVVGMYYGALTVMYVIPSSYHNSKQENILSVFYTVVTPALNPLIYSLRNKEVTGALRRVLGNTCCHYTVHSK", "length": 317, "header": "tr|A0A9J7FHY0-1|A0A9J7FHY0_CRIGR Isoform 1 of Olfactory receptor 2AG2 OS=Cricetulus griseus OX=10029 GN=LOC100765900 PE=3 SV=1 CANONICAL=A0A9J7FHY0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 282, "start_aa": "Thr", "end_pos": 282, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr282", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258080" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103159787", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FHZ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FHZ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "103159787", "url": "https://www.ncbi.nlm.nih.gov/gene/103159787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:103159787", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159787", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027258080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVFPSCHGKKEGRADGGPGREGGGGTGRRRGRRPGVSPNFDNFPPHAAPPRPAPPPPRPTGRGGAQSPARVSGARNQALTPAALENPVRMAHRADWRRRRPPQRPEKLRQNAYLSGLLFLKSAGKYTQVQFVFSKNKDFHMSIEPPKIMIKFRKFKMVTMMHSLIVLPSFCQLGINLHIPGKRESLLKNCLHQTGLWVPALHSSPEFPL", "length": 209, "header": "tr|A0A9J7FHZ3-1|A0A9J7FHZ3_CRIGR Isoform 1 of Uncharacterized protein LOC103159787 OS=Cricetulus griseus OX=10029 GN=LOC103159787 PE=4 SV=1 CANONICAL=A0A9J7FHZ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FHZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3/entry#A0A9J7FHZ3-1", "sequence": { "sequence": "MVFPSCHGKKEGRADGGPGREGGGGTGRRRGRRPGVSPNFDNFPPHAAPPRPAPPPPRPTGRGGAQSPARVSGARNQALTPAALENPVRMAHRADWRRRRPPQRPEKLRQNAYLSGLLFLKSAGKYTQVQFVFSKNKDFHMSIEPPKIMIKFRKFKMVTMMHSLIVLPSFCQLGINLHIPGKRESLLKNCLHQTGLWVPALHSSPEFPL", "length": 209, "header": "tr|A0A9J7FHZ3-1|A0A9J7FHZ3_CRIGR Isoform 1 of Uncharacterized protein LOC103159787 OS=Cricetulus griseus OX=10029 GN=LOC103159787 PE=4 SV=1 CANONICAL=A0A9J7FHZ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHZ3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103159787", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159787", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FI18-1", "uniprot_ac": "A0A9J7FI18", "uniprot_id": "A0A9J7FI18_CRIGR", "mass": { "chemical_mass": 83830.0, "monoisotopic_mass": 83830.0 }, "refseq": { "ac": "XP_027260870", "name": "la-related protein 4B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260870" }, "gene_names": [ { "name": "Larp4b", "type": "recommended", "evidence": [ { "id": "A0A9J7FI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ] }, { "name": "Larp4b", "type": "synonym", "evidence": [ { "id": "XP_027260870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260870" } ] } ], "protein_names": [ { "name": "La-related protein 4B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18/entry#names_and_taxonomy" } ] }, { "name": "la-related protein 4B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027260870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260870" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260870", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260870" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Larp4b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18", "locus": {} } ], "crossref": [ { "id": "A0A9J7FI18", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FI18", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08036", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08036", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12706", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12706", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753870", "url": "https://www.ncbi.nlm.nih.gov/gene/100753870", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753870", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753870", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RMQNTTT", "url": "https://omabrowser.org/oma/group/RMQNTTT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MX46", "url": "https://www.orthodb.org/?gene=A0A8C2MX46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FI18", "url": "https://www.orthodb.org/?gene=A0A9J7FI18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26088", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260870", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260870", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MX46", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MX46-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX46-1", "database": "UniProtKB", 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"MTSDQDTKIVAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSIPALTQTPYQLPVSEDGVVWGWQTRGGLFVPTTKVSELNPNAKVWGLHLEASSAAVGVNASWEEAPDHPVDCDQQVIGLDANGDGDKSHENAGLSDLQEADQTDMSTLALDHSEYEPLPESNDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYGLITPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKAEDLFENRLSGLIIGSSKERNLSTDASTNTVPVVVPREPSVPAPCAVSTAFERSPSPAHLPEDPKVAEKQRETHSVDRLPSTPTTTACKSVQVNGAATELRKPSYAEICQRTSRETPSSPLQPPKEQKPNTVACGKEEKKLAEPVERYREPPALKSTPGAPKDQRRQPGRRPSPPAAGKRLNREQNTPPKSPQ", "length": 760, "header": "tr|A0A9J7FI18-1|A0A9J7FI18_CRIGR Isoform 1 of La-related protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Larp4b PE=4 SV=1 CANONICAL=A0A9J7FI18-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MX46-1", "url": 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PE=4 SV=1 CANONICAL=A0A9J7FI18-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FI18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18/entry#A0A9J7FI18-1", "sequence": { "sequence": "MTSDQDTKIVAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSIPALTQTPYQLPVSEDGVVWGWQTRGGLFVPTTKVSELNPNAKVWGLHLEASSAAVGVNASWEEAPDHPVDCDQQVIGLDANGDGDKSHENAGLSDLQEADQTDMSTLALDHSEYEPLPESNDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYGLITPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKAEDLFENRLSGLIIGSSKERNLSTDASTNTVPVVVPREPSVPAPCAVSTAFERSPSPAHLPEDPKVAEKQRETHSVDRLPSTPTTTACKSVQVNGAATELRKPSYAEICQRTSRETPSSPLQPPKEQKPNTVACGKEEKKLAEPVERYREPPALKSTPGAPKDQRRQPGRRPSPPAAGKRLNREQNTPPKSPQ", "length": 760, "header": "tr|A0A9J7FI18-1|A0A9J7FI18_CRIGR Isoform 1 of La-related protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Larp4b PE=4 SV=1 CANONICAL=A0A9J7FI18-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753870", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AM13-1", "protein_name": "La ribonucleoprotein 4B", "gene_name": "LARP4B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTSDQDAKVVAEPQGQRVQEGKDCAHLMNGPISQATSQTSSIPALSQVPTAKVSELNPNAKVWGTHMLHLEAGSTADGGVRAAWEETPRRGQEGLDTHGSGDRSPENAALSDLQESDRTAMSTLGLDHSEYESPPENSETGGNESQPEGQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYRYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYAQQRYTASFYFPPVYSPQQPFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRQAIPSAERGPGLLESPSIFNFTAERLINGVRSPQTRQASQPRARIQTPAAFAKREVGPGRVEQSSLESPPGLGRGRKNSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDSFENRLPGLLAGPAKERSLNADASTNTQPAAPSREPPATCALTAACERAPSPARPPEDPEVVERQRETPSVDRPPPALSTTASKSVQVNGGATELRKPSYAEICQRTSREPPSSVLQPQKEQKPHAVACGKDERKLAEREPPAPRSSPGPAKDQRRPLGRRPSPPAPGRRPHRDQSPPPRSPQ", "length": 728 }, "evidence": [ { "id": "A0A9J7FI18", "url": "https://omabrowser.org/oma/group/A0A9J7FI18/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A3Q1LR80-1", "protein_name": "La ribonucleoprotein 4B", "gene_name": "LARP4B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPELFSKACGLEGSNTDSLANIELLPVEPQSKQLMTSDQDTKVVAEPQGQRVQEGKDSTHLMNGPISQTTSQSSSIPALSQVPTAKVSELNPNAKVWGTPLLQLEARGAADGGVSTVWEAPPGRGHLGLDTNGDGDKSHDNVGLSDLQESDQTAMSTLGLDHSEYESPPESGETGGNDSQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREIPESTPVEEVEALFKGDNLPRFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYTQQRYTASFYLPPVYSPQQQFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLMNGVRSPQVRQTAQPRARLQNPPAFAKRDVGPGRVEQSSFESSPGLGRGRKSSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDLFENRLSGLLTGTSKERSLNADASTNTLPAVHPREPLAPCAVSAACERTPSPARPPEDAKVVEKQRETPSVDRPPPALALSTTASKSVQVNGAASELRKPSYAEICQRTSREPPSSPLQPPKEQKPNPVGSGKEERKVTEREPPAPKSSPGPPKDQRRPLGRRPSPPGLGRRPHREQSPPPRPPQ", "length": 765 }, "evidence": [ { "id": "A0A9J7FI18", "url": "https://omabrowser.org/oma/group/A0A9J7FI18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6A0A2-1", "protein_name": "La-related protein 4B", "gene_name": "Larp4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSDQDAKVVAEPQAQRVQEGKDSSHLMNGPISQTTSQTRSLPALTQVPTTKVSELNPNAKVWGTHMLHLEASSAAVGVNAAWEEAPGHPTDCDQQVLGLDANGDGDKSRENAALPDAQEAEQTDMSTLALDHSEYEPLPENNDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYSLITPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPATSPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKTEDLFENRLSSLIIGSSKERNLSTDASTNTVPVVGPREPSVPAPCAVSAAFERSPSPVHLPEDPKVAEKQRETQSVDRLPSTPTTTACKSVQVNGAATELRKPSYAEICQRTSKDPSSSSPLQPPKEQKPSTVACGKEEKQLSEPVERHREPPALKSTPGVPKDQRRQPGRRASPPAAGKRLSKEQNTPPKSPQ", "length": 741 }, "evidence": [ { "id": "A0A9J7FI18", "url": "https://omabrowser.org/oma/group/A0A9J7FI18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92615-1", "protein_name": "La-related protein 4B", "gene_name": "LARP4B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQQQFPLYSLITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ", "length": 738 }, "evidence": [ { "id": "A0A9J7FI18", "url": "https://omabrowser.org/oma/group/A0A9J7FI18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "pmid": "" }, { "name": "positive regulation of 3'-UTR-mediated mRNA stabilization", "id": "GO:1905870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905870", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI18" }, { "id": "PS50961", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50961" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH La-type RNA-binding", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 261, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 540 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 461, "end_pos": 463 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FI33-1", "uniprot_ac": "A0A9J7FI33", "uniprot_id": "A0A9J7FI33_CRIGR", "mass": { "chemical_mass": 58252.0, "monoisotopic_mass": 58252.0 }, "refseq": { "ac": "XP_027260650", "name": "piggyBac transposable element-derived protein 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260650" }, "gene_names": [ { "name": "Pgbd5", "type": "recommended", "evidence": [ { "id": "A0A9J7FI33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33" } ] }, { "name": "Pgbd5", "type": "synonym", "evidence": [ { "id": "XP_027260650", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260650" } ] } ], "protein_names": [ { "name": "PiggyBac transposable element-derived protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FI33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33/entry#names_and_taxonomy" } ] }, { "name": "piggyBac transposable element-derived protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027260650", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260650" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260650", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260650" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pgbd5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33", "locus": {} } ], "crossref": [ { "id": "A0A9J7FI33", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FI33", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774154", "url": "https://www.ncbi.nlm.nih.gov/gene/100774154", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774154", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774154", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FI33", "url": "https://www.orthodb.org/?gene=A0A9J7FI33", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28576", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28576", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28576:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28576:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13843", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13843", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260650", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260650", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FI33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FI33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGGGGARRRAPALLEAARARYESLHISDDVFGESGPDSGGNPFYSTSAASRSSSAASSDDERERPAPPGTAPPPQAVDPLELEEDEAGGGWSSALRDRPPPHFEDTGGPTRKMPPSASAVDFFQLFVPDNVLKNMVVQTNMYARKFQDRFGSDGAWVEVTLAEMKAFLGYVISTSVSHCESVLSIWSGGFYSNRSLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGFDAAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGIYCCGLLSSRKSDCTGLPQSMLTNPATPLARGQHQIRTKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRRSGEIPCPLAVEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAVNNAYILYKMSDAYHVKRYSRAQFGERLVRELLGLEDASPAH", "length": 523, "header": "tr|A0A9J7FI33-1|A0A9J7FI33_CRIGR Isoform 1 of PiggyBac transposable element-derived protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pgbd5 PE=4 SV=1 CANONICAL=A0A9J7FI33-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FI33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI33/entry#A0A9J7FI33-1", "sequence": { "sequence": "MAEGGGGARRRAPALLEAARARYESLHISDDVFGESGPDSGGNPFYSTSAASRSSSAASSDDERERPAPPGTAPPPQAVDPLELEEDEAGGGWSSALRDRPPPHFEDTGGPTRKMPPSASAVDFFQLFVPDNVLKNMVVQTNMYARKFQDRFGSDGAWVEVTLAEMKAFLGYVISTSVSHCESVLSIWSGGFYSNRSLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGFDAAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGIYCCGLLSSRKSDCTGLPQSMLTNPATPLARGQHQIRTKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRRSGEIPCPLAVEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAVNNAYILYKMSDAYHVKRYSRAQFGERLVRELLGLEDASPAH", "length": 523, "header": "tr|A0A9J7FI33-1|A0A9J7FI33_CRIGR Isoform 1 of PiggyBac transposable element-derived protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pgbd5 PE=4 SV=1 CANONICAL=A0A9J7FI33-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260996" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FI79", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI79" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834624", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI79", "locus": {} } ], "crossref": [ { "id": "A0A9J7FI79", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FI79", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/A0A9J7FIC5/entry#names_and_taxonomy" } ] }, { "name": "protein FAM151A", "type": "synonym", "evidence": [ { "id": "XP_003495806", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495806" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495806", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495806" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam151a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FIC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FIC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752673", "url": "https://www.ncbi.nlm.nih.gov/gene/100752673", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752673", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752673", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AHQVYYD", "url": "https://omabrowser.org/oma/group/AHQVYYD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FIC5", "url": "https://www.orthodb.org/?gene=A0A9J7FIC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21184:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21184:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10223", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10223", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495806", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495806", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCKKWCSNSQDKWILVGSVSVTLVLTIAMVLGLTLNRGTQPGCEQDAVCRSDADMLDYMLSTGQINHRDGLLVTWYHAANSKKEMEAALNSDVMVLEADVTVEGFTTANETGVPIMAHPPAIYSDNTLQQWLEAVLASSQKGIKLDFKSLKAVGPSLDLLRHLTEAGRIRRPVWINADIMRGPNVPISVEINATQFLALVQEKYPEVTISPGFTTLYVPQLPNSTYTQAMVEKMQELVGALPQRITFPVRASMARAAWPHFSWLLGQSERYSLTLWQGASDPVSVDDLLFIRDNSATHQIYYDLFEPVLSQFKQLALNSTRKRTYYTGGSLIPLLQQPRGDGLEVEWLVPEVNGSGRTAAITVPDREGMILLDVGLQQPEAGNPVPILRAPGGPVMTLESFLLQLAVHPRRWGIHVNIVEPAALRPSLATLAHLSTLGHLPWPVWVGATISHGNFVVPGHVAGRELLTAVAEVFPHVTVAPGWPEEVLGSGYQEQMVTDMLELCQGLWQPVSFQLQAGPLGRSTAKAVARLLAASPRATVTVHHSVAGNSYADAWAGLWVARAMDRTRVYYRIPQEYREDLLADVSRN", "length": 589, "header": "tr|A0A9J7FIC5-1|A0A9J7FIC5_CRIGR Isoform 1 of Protein FAM151A OS=Cricetulus griseus OX=10029 GN=Fam151a PE=3 SV=1 CANONICAL=A0A9J7FIC5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5/entry#A0A9J7FIC5-1", "sequence": { "sequence": "MSCKKWCSNSQDKWILVGSVSVTLVLTIAMVLGLTLNRGTQPGCEQDAVCRSDADMLDYMLSTGQINHRDGLLVTWYHAANSKKEMEAALNSDVMVLEADVTVEGFTTANETGVPIMAHPPAIYSDNTLQQWLEAVLASSQKGIKLDFKSLKAVGPSLDLLRHLTEAGRIRRPVWINADIMRGPNVPISVEINATQFLALVQEKYPEVTISPGFTTLYVPQLPNSTYTQAMVEKMQELVGALPQRITFPVRASMARAAWPHFSWLLGQSERYSLTLWQGASDPVSVDDLLFIRDNSATHQIYYDLFEPVLSQFKQLALNSTRKRTYYTGGSLIPLLQQPRGDGLEVEWLVPEVNGSGRTAAITVPDREGMILLDVGLQQPEAGNPVPILRAPGGPVMTLESFLLQLAVHPRRWGIHVNIVEPAALRPSLATLAHLSTLGHLPWPVWVGATISHGNFVVPGHVAGRELLTAVAEVFPHVTVAPGWPEEVLGSGYQEQMVTDMLELCQGLWQPVSFQLQAGPLGRSTAKAVARLLAASPRATVTVHHSVAGNSYADAWAGLWVARAMDRTRVYYRIPQEYREDLLADVSRN", "length": 589, "header": "tr|A0A9J7FIC5-1|A0A9J7FIC5_CRIGR Isoform 1 of Protein FAM151A OS=Cricetulus griseus OX=10029 GN=Fam151a PE=3 SV=1 CANONICAL=A0A9J7FIC5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752673", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752673", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287B7Q4-1", "protein_name": "Protein FAM151A", "gene_name": "FAM151A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MACKKGCSKWSLVTGACVALGFAVIMVLCFTLQKRTQPGCVQAAACRSDADMMDYLLSVGQLSQRDGLLVTWYHAANSQKEMQAALSSDIMVLEADVTVEGLNTANETGVPIMAHPPAIYSDNTLQQWLETVLASSQKGIKLDFKSIKAVGPALDLLRRLTEEGRVRRPVWINADILRGPNMPISIEVNATQFLNLVQEKYPETTLSPGWTTLYLPQLPNGTYSRAMVEKMQELVGPVPQRVTFPVRAVMVRAAWPHFSWLLGQSERYSLTLWQSASDPLLVDDLLYVRDNTAAHQIYYDIFEPLLSQFKQLAANTSRKQSYYTGGSLVPLLQLPGEEGVSVEWLVPEIQGNGSTATVHLPDREGMILLNVGLQEPAAGDPVAVVRAPDGRALTLEPCLRQLAMRPGSWGVHLHMAVPTALRPSLATLANLSALGHLLRPVWVGATISHGSFVAPGYVTGRELLAAVAEVFPHVTVAPGWPEEVLGSGYREQLVTDMLELCQGLWQPVSFQLQAGPLGQSTAGVVARLLAASPRATVTVEHGPGRGHYASVRAALLAARAVDKTRVYYRLPQSDRADLLANVGRN", "length": 585 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A3Q1LZY6-1", "protein_name": "Protein FAM151A", "gene_name": "FAM151A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANKKGCWKWAIVGGVSAAVVFAIAMVLGFSLQKDTILPGCEQDGTCRSDADMLDYLLSLGQISQRDGLLVTWYHRANSKEQMKAALSSNVMALEADITIEGLGTVNETGVPIMAHPPAIYSDNTLEQWLEAVLASSQKGIKLDFKSIKAVGPSLDLLRRLTEEGKVRRPVWINADIQRGPNVGLSIEVNATQFLALVQEKYPEATLSPGWTTFYLPLFPNVTYTRAMVEQMQELVGALPQRVTFPVLAVMARAAWPHFSWLLAQSDRYTLTMWQSASDPVSVDDLLYIRDNTATHQVYYDIFEPFLSQFKQLAMNTSRKPSYYTGGSLIPALQHPGDEGLSVEWLVPDIQGNGSAATVQLPDREGMILLDVGLQKPAAGDPVPIVRTPDGRALTLESCLQQLATHPGRWGIHVHIAEPTALRPSLATLATLSALGHLSRPVWVGATVSHGSFMVPGYVTGRELLTAVAEVFPHVTVAPGWPEEVLGSGYREQLLTDMLELCQGLWQPVSFQLQAGPLAQSPTGVVARLLKASPRATVTVEHSPGRGLYASVRAALLAARAVKKTRVYYRLPQSYRQDLLADVGTH", "length": 586 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A5PN38-1", "protein_name": "Protein FAM151A", "gene_name": "fam151a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEVKEEKSCSIGEGEEAEGKEAKTVLGIFTREQFIMLCVGLGLIALLLIITLTSVFVIAKSDASVDVDMEPFPSDGDMLDFLLQTGEIEEKDGLYATWYHAANSKSEMSKALNSDVMILEADVNVQGHNTVNETNIPIMAHPPDIYSDNTLEEWLDAVLKSKKGVKLDFKSISAVEPSLDLLRAKNQTGINRPVWINADILPGPNVPEFWPVVNASEFFELIQLKFPDVTISPGWKVLYLSIFPNVTYTRSMVEQMYSTIRHLPQKITFPVHALMAKNGWPHLSWLLSQSSRYSLTLWQGKENPTLNDLLFIRDNSNPQRIYYDIYEPVLSQFREAAKIKDRPRRFYPGGDIVDYFRPADSDGLNIQWDTVNDKDSLLSLLEDSPGGMLVIPVKSSDGHPNIPIIDGSEMPLKDCLDLILASTKPWGIYLQIKSQNQLSLSLELLRQAYDIDLLHHPTWVNMDISHGAVHIQGYMTGEEFLRTVDRIFPHVTLAPSWPKEALVEGYTPEMLEPMVQLFHRAWQDVSLQLQAEALDRSETWRLVLVQPRFSLTVEHQTENKDINAGIESLMAIRAANRQRSFYNIPKMYREHITDLSVRK", "length": 599 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q642A7-1", "protein_name": "Protein FAM151A", "gene_name": "Fam151a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSCKKCCSSSQTKWILAGSVSMTLVLAISMILGLTLYQRTRPGCENDAVCRPDADMLDYLQNIGQISHRDGLLVTWYHAANSKKEMEAALNSDVMVLEADVTVEGFNTANETEVPIMAHPPAIYSDNTLKEWLEAVLASSQKGIKLDFKSLKAVGPSLDLLRQLTEAGRIRRPVWINADILKGPNVPISTEVNATQFLALVQEKYPKATISPGFTTLYVHQLPNSTYTQAMVETMEELVRALPQKVTFPMRAVMTRAAWPHFSWLLSQSERYSLTLWQGASDPVSVEDLLFIRDNSAPHQIYYDLFEPVLSQFKQLALNTTRKRTFYTGGSLIPVLQQPKGDGLEVEWLALEVNDKGRKAAITVPDREGMILLDVGLQEPEVGNPVPVLRTPGGSVLTLESCLLHLAVHATRWSIHVNITEPAALRPSLATLAHLSTLGHLPWPVWVGATVSYGSFVVPGHIAGRELLTAVAEVFPHVTVAPAWPEEMLGSGYQEQMVTEMLELCQGLRQPVSFQLQAGPLGQSPANTVARLLAFSPRATVTVYHSSAGNSYADVWAGLWAARAVDRTRVYYRIPQEYRKDLLAHVDRHRPSSRTGPSYVEGFPGESR", "length": 608 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8QZW3-1", "protein_name": "Protein FAM151A", "gene_name": "Fam151a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCKKWCSSSQAKWILAGSVTVTLVLAISLILGLTLHQGTQPGCENDAICGPDADMLDYLMGMGQISHRDGLLVTWYHAANSKKEMAAALNSDVMVLEADVTVEGFNTANETKVPIMAHPPAIYSDNTLQEWLEAVLASSQKGIKLDFKSLKAVGPSLDLLRQLTEAGRIRRPVWINADILRGPNVPISIEINATQFLTLVQEKYPKATISPGFTTLYVPQLPNSTYTQAMVETMQELVGALPQKVTFPVRAVMTRAAWPHFSWLLSQSERYSLTLWQGASDPVSVEDLLFIRDNSAAHQIYYDLFEPVLSQFKQLALNTTRKRTYYTGGSLIPLLQQPKGDGLEVEWLVLEVNGSGRRAAITVPDREGMILLDIGLQEPEAGNPVPILHTPGGPALTLESCLLRLAVHPRRWGIHVNIVEPEALRPSLATLAHLSTLGHLPWPVWVGSTVSHGSFVVPGHIAGRELLTAVAEVFPHVTVAPGWPEEMLDSGYQEQMVTDMLELCQGLRQPVSFQLQAGPLSQSPANTVARLLASSPRATVTVYHSTAGNSHVDLWAGLWAARAVDRTRVYYRISQEYWKDLQADVSSNRPSSRIGPSSVEGFPGESR", "length": 608 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WW52-1", "protein_name": "Protein FAM151A", "gene_name": "FAM151A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVCREQLSKNQVKWVFAGITCVSVVVIAAIVLAITLRRPGCELEACSPDADMLDYLLSLGQISRRDALEVTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWLDAVLGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLISTEVNATQFLALVQEKYPKATLSPGWTTFYMSTSPNRTYTQAMVEKMHELVGGVPQRVTFPVRSSMVRAAWPHFSWLLSQSERYSLTLWQAASDPMSVEDLLYVRDNTAVHQVYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQLPGDDGLNVEWLVPDVQGSGKTATMTLPDTEGMILLNTGLEGTVAENPVPIVHTPSGNILTLESCLQQLATHPGHWGIHLQIAEPAALRPSLALLARLSSLGLLHWPVWVGAKISHGSFSVPGHVAGRELLTAVAEVFPHVTVAPGWPEEVLGSGYREQLLTDMLELCQGLWQPVSFQMQAMLLGHSTAGAIGRLLASSPRATVTVEHNPAGGDYASVRTALLAARAVDRTRVYYRLPQGYHKDLLAHVGRN", "length": 585 }, "evidence": [ { "id": "A0A9J7FIC5", "url": "https://omabrowser.org/oma/group/A0A9J7FIC5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FIC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIC5" }, { "id": "PF10223", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10223" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Menorin-like", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 309, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 193, "end_pos": 195 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 354, "end_pos": 356 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FLE4-1", "uniprot_ac": "A0A9J7FLE4", "uniprot_id": "A0A9J7FLE4_CRIGR", "mass": { "chemical_mass": 219516.0, "monoisotopic_mass": 219516.0 }, "refseq": { "ac": "XP_027259934", "name": "transcription factor 20 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259934" }, "gene_names": [ { "name": "Tcf20", "type": "recommended", "evidence": [ { "id": "A0A9J7FLE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4" } ] }, { "name": "Tcf20", "type": "synonym", "evidence": [ { "id": "XP_027259934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259934" } ] } ], "protein_names": [ { "name": "Transcription factor 20 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FLE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4/entry#names_and_taxonomy" } ] }, { "name": "transcription factor 20 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027259934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259934" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259934", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259934" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tcf20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4", "locus": {} } ], "crossref": [ { "id": "cd15699", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15699", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774117", "url": "https://www.ncbi.nlm.nih.gov/gene/100774117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774117", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774117", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FLE4", "url": "https://www.orthodb.org/?gene=A0A9J7FLE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14955:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14955:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259934", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259934", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAHMFQNFGGAGGGSGGTGSNSSGRRGTATAATAMASETSGHQGYQGFRKEAGDFYYMTGNKDPVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVSQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLSQATGQSASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQSQSMKNFEQTKIPPGTQQGQQQQQQQQQPQSQQQQQQQQQQQQQQQHPPQHVMQYTNAAPKLPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSSENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPAAREEAASPGAKDTPLSEGNAKVNEKTVGVIVSREAMTGRVEKSGGQDKGSQEEDPAASQRPPSNSGIKEASHTSLPQPDPPGGGSKGNKNGDNSSNHNGEGNGQGSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGFPQYPSGQEKGDFASHGERKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQDHQGMTSGLEGTARPNILVSQANELASRGILNKSIGSLLENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPASSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCHSTSIKHESYRGNVSPGVAAHDSISDYSSQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGRSRGPGADPHHMNPHMTFSERANRSSLHATFSPNSESLASAYHTNTRAHAYGDPNAGLNSQLHYKRQMYQQQQEEYKDWTSSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGLPAKGMELKHSSQKLQESCWDLSRQTSPGKSSGPPGMSNQKRYGPPHETDGHVLTDSTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLHPSKEGADKAYNSYTLSHSQDIKSIPKRDASKDFANPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSTEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKGEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGDDKVKTEAHAETAPTGKEPSGTMTSTASQKSGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQSKVKVRHKSTSNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSCEKAVLDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKLKPSSPWKVKGHRAEEIPGEWGQHPSCLPFRALSPPCRTRPRKAASAQSSRSGGEGGSVHVGMDSKHR", "length": 2021, "header": "tr|A0A9J7FLE4-1|A0A9J7FLE4_CRIGR Isoform 1 of Transcription factor 20 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcf20 PE=4 SV=1 CANONICAL=A0A9J7FLE4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4/entry#A0A9J7FIE7-1", "sequence": { "sequence": "MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAHMFQNFGGAGGGSGGTGSNSSGRRGTATAATAMASETSGHQGYQGFRKEAGDFYYMTGNKDPVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVSQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLSQATGQSASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQSQSMKNFEQTKIPPGTQQGQQQQQQQQQPQSQQQQQQQQQQQQQQQHPPQHVMQYTNAAPKLPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSSENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPAAREEAASPGAKDTPLSEGNAKVNEKTVGVIVSREAMTGRVEKSGGQDKGSQEEDPAASQRPPSNSGIKEASHTSLPQPDPPGGGSKGNKNGDNSSNHNGEGNGQGSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGFPQYPSGQEKGDFASHGERKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQDHQGMTSGLEGTARPNILVSQANELASRGILNKSIGSLLENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPASSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCHSTSIKHESYRGNVSPGVAAHDSISDYSSQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGRSRGPGADPHHMNPHMTFSERANRSSLHATFSPNSESLASAYHTNTRAHAYGDPNAGLNSQLHYKRQMYQQQQEEYKDWTSSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGLPAKGMELKHSSQKLQESCWDLSRQTSPGKSSGPPGMSNQKRYGPPHETDGHVLTDSTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLHPSKEGADKAYNSYTLSHSQDIKSIPKRDASKDFANPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSTEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKGEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGDDKVKTEAHAETAPTGKEPSGTMTSTASQKSGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQSKVKVRHKSTSNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSCEKAVLDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKNKTAKGSLSTEQSERG", "length": 1969, "header": "tr|A0A9J7FIE7-1|A0A9J7FLE4_CRIGR Computationally mapped isoform of Transcription factor 20 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcf20 PE=4 SV=1 CANONICAL=A0A9J7FLE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4/entry#A0A9J7FKC1-1", "sequence": { "sequence": "MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAHMFQNFGGAGGGSGGTGSNSSGRRGTATAATAMASETSGHQGYQGFRKEAGDFYYMTGNKDPVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVSQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLSQATGQSASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQSQSMKNFEQTKIPPGTQQGQQQQQQQQQPQSQQQQQQQQQQQQQQQHPPQHVMQYTNAAPKLPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSSENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPAAREEAASPGAKDTPLSEGNAKVNEKTVGVIVSREAMTGRVEKSGGQDKGSQEEDPAASQRPPSNSGIKEASHTSLPQPDPPGGGSKGNKNGDNSSNHNGEGNGQGSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGFPQYPSGQEKGDFASHGERKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQDHQGMTSGLEGTARPNILVSQANELASRGILNKSIGSLLENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPASSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCHSTSIKHESYRGNVSPGVAAHDSISDYSSQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGRSRGPGADPHHMNPHMTFSERANRSSLHATFSPNSESLASAYHTNTRAHAYGDPNAGLNSQLHYKRQMYQQQQEEYKDWTSSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGLPAKGMELKHSSQKLQESCWDLSRQTSPGKSSGPPGMSNQKRYGPPHETDGHVLTDSTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLHPSKEGADKAYNSYTLSHSQDIKSIPKRDASKDFANPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSTEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKGEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGDDKVKTEAHAETAPTGKEPSGTMTSTASQKSGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQSKVKVRHKSTSNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSCEKAVLDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKLKPSSPWKVKGHRAEEIPGEWGQHPSW", "length": 1980, "header": "tr|A0A9J7FKC1-1|A0A9J7FKC1_CRIGR Computationally mapped isoform of Transcription factor 20 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tcf20 PE=4 SV=1 CANONICAL=A0A9J7FLE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4/entry#A0A9J7FLE4-1", "sequence": { "sequence": "MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAHMFQNFGGAGGGSGGTGSNSSGRRGTATAATAMASETSGHQGYQGFRKEAGDFYYMTGNKDPVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVSQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLSQATGQSASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQSQSMKNFEQTKIPPGTQQGQQQQQQQQQPQSQQQQQQQQQQQQQQQHPPQHVMQYTNAAPKLPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSSENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPAAREEAASPGAKDTPLSEGNAKVNEKTVGVIVSREAMTGRVEKSGGQDKGSQEEDPAASQRPPSNSGIKEASHTSLPQPDPPGGGSKGNKNGDNSSNHNGEGNGQGSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGFPQYPSGQEKGDFASHGERKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQDHQGMTSGLEGTARPNILVSQANELASRGILNKSIGSLLENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPASSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCHSTSIKHESYRGNVSPGVAAHDSISDYSSQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGRSRGPGADPHHMNPHMTFSERANRSSLHATFSPNSESLASAYHTNTRAHAYGDPNAGLNSQLHYKRQMYQQQQEEYKDWTSSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGLPAKGMELKHSSQKLQESCWDLSRQTSPGKSSGPPGMSNQKRYGPPHETDGHVLTDSTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLHPSKEGADKAYNSYTLSHSQDIKSIPKRDASKDFANPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSTEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKGEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGDDKVKTEAHAETAPTGKEPSGTMTSTASQKSGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQSKVKVRHKSTSNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSCEKAVLDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKLKPSSPWKVKGHRAEEIPGEWGQHPSCLPFRALSPPCRTRPRKAASAQSSRSGGEGGSVHVGMDSKHR", "length": 2021, "header": "tr|A0A9J7FLE4-1|A0A9J7FLE4_CRIGR Isoform 1 of Transcription factor 20 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcf20 PE=4 SV=1 CANONICAL=A0A9J7FLE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4/entry#A0A9J7FLV2-1", "sequence": { "sequence": 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"MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAHMFQNFGGAGGGSGGTGSNSSGRRGTATAATAMASETSGHQGYQGFRKEAGDFYYMTGNKDPVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVSQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLSQATGQSASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQSQSMKNFEQTKIPPGTQQGQQQQQQQQQPQSQQQQQQQQQQQQQQQHPPQHVMQYTNAAPKLPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSSENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPAAREEAASPGAKDTPLSEGNAKVNEKTVGVIVSREAMTGRVEKSGGQDKGSQEEDPAASQRPPSNSGIKEASHTSLPQPDPPGGGSKGNKNGDNSSNHNGEGNGQGSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGFPQYPSGQEKGDFASHGERKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQDHQGMTSGLEGTARPNILVSQANELASRGILNKSIGSLLENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPASSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMGADARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCHSTSIKHESYRGNVSPGVAAHDSISDYSSQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGRSRGPGADPHHMNPHMTFSERANRSSLHATFSPNSESLASAYHTNTRAHAYGDPNAGLNSQLHYKRQMYQQQQEEYKDWTSSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGRCLMSSDGLPAKGMELKHSSQKLQESCWDLSRQTSPGKSSGPPGMSNQKRYGPPHETDGHVLTDSTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTDDKGRLHPSKEGADKAYNSYTLSHSQDIKSIPKRDASKDFANPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSTEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKGEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGDDKVKTEAHAETAPTGKEPSGTMTSTASQKSGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINAEEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRSTEMQSKVKVRHKSTSNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSCEKAVLDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG", "length": 1980, "header": "tr|A0A9J7JIK7-1|A0A9J7JIK7_CRIGR Computationally mapped isoform of Transcription factor 20 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tcf20 PE=4 SV=1 CANONICAL=A0A9J7FLE4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 410, "start_aa": "Thr", "end_pos": 410, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr410", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 446, "start_aa": "Thr", "end_pos": 446, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr446", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 586, "start_aa": "Thr", "end_pos": 586, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr586", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIE7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIE7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774117", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774117", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1066, "end_pos": 1068, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1391, "end_pos": 1393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1536, "end_pos": 1538, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1648, "end_pos": 1650, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1778, "end_pos": 1780, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1944, "end_pos": 1946, "annotation": 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"url": "https://prosite.expasy.org/PS51805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 1849, "end_pos": 1953, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 410, 446, 586 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1066, "end_pos": 1068 }, { "start_pos": 1391, "end_pos": 1393 }, { "start_pos": 1536, "end_pos": 1538 }, { "start_pos": 1648, "end_pos": 1650 }, { "start_pos": 1778, "end_pos": 1780 }, { "start_pos": 1944, "end_pos": 1946 }, { "start_pos": 297, "end_pos": 299 }, { "start_pos": 388, "end_pos": 390 }, { "start_pos": 54, "end_pos": 56 }, { "start_pos": 694, "end_pos": 696 }, { "start_pos": 743, 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"Domain_Extent_Annotation", "uniprotkb_annotation": "Small EDRK-rich factor-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 172, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"evidence": [ { "id": "A0A9J7FII2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ] }, { "name": "LOC100755428", "type": "synonym", "evidence": [ { "id": "XP_027260767", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260767" } ] } ], "protein_names": [ { "name": "Interferon-induced very large GTPase 1", "type": "synonym", "evidence": [ { "id": "A0A9J7FII2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced very large GTPase 1", "type": "synonym", "evidence": [ { "id": "XP_027260767", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260767" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027260767.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260767", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260767" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755428", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2", "locus": {} } ], "crossref": [ { "id": "100755428", "url": "https://www.ncbi.nlm.nih.gov/gene/100755428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755428", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755428", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FII2", "url": "https://www.orthodb.org/?gene=A0A9J7FII2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25974", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25974", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260767", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260767", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FII2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 2428, "header": "tr|A0A9J7FII2-1|A0A9J7FII2_CRIGR Isoform 1 of Interferon-induced very large GTPase 1 OS=Cricetulus griseus OX=10029 GN=LOC100755428 PE=3 SV=1 CANONICAL=A0A9J7FII2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755428", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755428", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1011, "end_pos": 1013, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1162, "end_pos": 1164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1189, "end_pos": 1191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1411, "end_pos": 1413, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1560, "end_pos": 1562, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1578, "end_pos": 1580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1657, "end_pos": 1659, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, 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"database": "PROSITE", "url": "https://prosite.expasy.org/PS51717" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VLIG-type G", "eco_id": "ECO_0000259", "start_pos": 1486, "end_pos": 1727, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1011, "end_pos": 1013 }, { "start_pos": 1162, "end_pos": 1164 }, { "start_pos": 1189, "end_pos": 1191 }, { "start_pos": 1411, "end_pos": 1413 }, { "start_pos": 1560, "end_pos": 1562 }, { "start_pos": 1578, "end_pos": 1580 }, { "start_pos": 1657, "end_pos": 1659 }, { "start_pos": 175, "end_pos": 177 }, { "start_pos": 1906, "end_pos": 1908 }, { "start_pos": 1979, "end_pos": 1981 }, { "start_pos": 1990, "end_pos": 1992 }, { "start_pos": 2209, "end_pos": 2211 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 500, "end_pos": 502 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"Heat shock factor protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FLJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#names_and_taxonomy" } ] }, { "name": "heat shock factor protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027260039", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260039" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260039", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260039" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hsf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FLJ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FLJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762942", "url": "https://www.ncbi.nlm.nih.gov/gene/100762942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762942", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FLJ4", "url": "https://www.orthodb.org/?gene=A0A9J7FLJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015:SF274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015:SF274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260039", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260039", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FII4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FII4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT91-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIM4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 553, "header": "tr|A0A9J7FLJ4-1|A0A9J7FLJ4_CRIGR Isoform 1 of Heat shock factor protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FII4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7FII4-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDKNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 524, "header": "tr|A0A9J7FII4-1|A0A9J7FLJ4_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7FKF9-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 531, "header": "tr|A0A9J7FKF9-1|A0A9J7FKF9_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7FKQ4-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDESTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 548, "header": "tr|A0A9J7FKQ4-1|A0A9J7FKQ4_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7FLJ4-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 553, "header": "tr|A0A9J7FLJ4-1|A0A9J7FLJ4_CRIGR Isoform 1 of Heat shock factor protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7FLZ7-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDKNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 502, "header": "tr|A0A9J7FLZ7-1|A0A9J7FLZ7_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GT91-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7GT91-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDIQELLSPQEPPRPIEAENSNSDSAGALHSSAPVPAGP", "length": 477, "header": "tr|A0A9J7GT91-1|A0A9J7GT91_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X15 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7GTH5-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDERPLSSSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSAGALHSSAPVPAGP", "length": 499, "header": "tr|A0A9J7GTH5-1|A0A9J7GTH5_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4/entry#A0A9J7JIM4-1", "sequence": { "sequence": "MDLALGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEHGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSSSAHSVPKYGRQYSLEHVHGPGPYSAPSPAYSSSSLYTSDAVTSSGPIISDITELTPTTPLASPGRSIDESSTLIRVKEEPPSPPRSPRVLEASPGRPSSMDTPLSPTAFIDSILRESEPNPAASNTAPVDTTGVHAPAPPPSTPEKCLSVACLDNLARAPQMSGVARLFPCPSSSFLHGRVQPGNELSDHLDAMDSNLDNLQTMLTSHGFSVDTSALLDLFSPSVTMPDMSLPDLDSSLASIQELLSPQEPPRPIEAENSNSDSGKQLVHYTAQPLFLLDPDAVDTGNSELPVLFELGESSYFSEGDDYTDDPTISLLTGSEPPKAKDPTVS", "length": 549, "header": "tr|A0A9J7JIM4-1|A0A9J7JIM4_CRIGR Computationally mapped isoform of Heat shock factor protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Hsf1 PE=3 SV=1 CANONICAL=A0A9J7FLJ4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 364, "start_aa": "Thr", "end_pos": 364, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr364", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FII4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FII4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762942", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FLJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLJ4" }, { "id": "PS00434", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00434" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HSF-type DNA-binding", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 81, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 364 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIK7-1", "uniprot_ac": "A0A9J7FIK7", "uniprot_id": "A0A9J7FIK7_CRIGR", "mass": { "chemical_mass": 54360.0, "monoisotopic_mass": 54360.0 }, "refseq": { "ac": "XP_027257764", "name": "LOW QUALITY PROTEIN: igE-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257764" }, "gene_names": [ { "name": "LOC113834239", "type": "recommended", "evidence": [ { "id": "A0A9J7FIK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7" } ] }, { "name": "LOC113834239", "type": "synonym", "evidence": [ { "id": "XP_027257764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257764" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: igE-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_027257764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257764" }, { "id": "A0A9J7FIK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027257764.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257764" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834239", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7", "locus": {} } ], "crossref": [ { "id": "113834239", "url": "https://www.ncbi.nlm.nih.gov/gene/113834239", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113834239", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834239", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIK7", "url": "https://www.orthodb.org/?gene=A0A9J7FIK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257764", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVAESQKMLKEVQDNISETERDERIGAQKRKDMSKEKGPPQDIKKGGEKIGNNRSHPGKFKRNKDSKPSLCPTTKLEALELSSSDSEILDSSKEAELEEELPKVKANMRPPPVNPAGVLPSAPPLFGTDSFLPLEERRKLQMAFPVFENXGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALFYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNTSACFNCGKTGHLKKDCRAPERIREVELCRRCGKGYHRASECKXRDIKGRLLPPREEPKASQPKNGPRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 486, "header": "tr|A0A9J7FIK7-1|A0A9J7FIK7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: igE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113834239 PE=4 SV=1 CANONICAL=A0A9J7FIK7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7/entry#A0A9J7FIK7-1", "sequence": { "sequence": "MVAESQKMLKEVQDNISETERDERIGAQKRKDMSKEKGPPQDIKKGGEKIGNNRSHPGKFKRNKDSKPSLCPTTKLEALELSSSDSEILDSSKEAELEEELPKVKANMRPPPVNPAGVLPSAPPLFGTDSFLPLEERRKLQMAFPVFENXGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALFYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNTSACFNCGKTGHLKKDCRAPERIREVELCRRCGKGYHRASECKXRDIKGRLLPPREEPKASQPKNGPRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 486, "header": "tr|A0A9J7FIK7-1|A0A9J7FIK7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: igE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113834239 PE=4 SV=1 CANONICAL=A0A9J7FIK7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "viral process", "id": "GO:0016032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FIK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIK7" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 382, "end_pos": 396, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 229, "end_pos": 231 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIL3-1", "uniprot_ac": "A0A9J7FIL3", "uniprot_id": "A0A9J7FIL3_CRIGR", "mass": { "chemical_mass": 52137.0, "monoisotopic_mass": 52137.0 }, "refseq": { "ac": "XP_027260099", "name": "coiled-coil domain-containing protein 166 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260099" }, "gene_names": [ { "name": "Ccdc166", "type": "recommended", "evidence": [ { "id": "A0A9J7FIL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3" } ] }, { "name": "Ccdc166", "type": "synonym", "evidence": [ { "id": "XP_027260099", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260099" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 166 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FIL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 166 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027260099", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260099" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260099", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260099" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc166", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FIL3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FIL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763932", "url": "https://www.ncbi.nlm.nih.gov/gene/100763932", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763932", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763932", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIL3", "url": "https://www.orthodb.org/?gene=A0A9J7FIL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14845:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14845:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14988", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14988", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260099", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260099", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPKKRRGVGRKQVGDNAEVQLTERAQYLLREYSLLSDNLVACEQWVDQVLQDNAFLDREALRLREENRLYASYVSTHAQRCANTIVRLEDQNRVDLAHIRWQRAELASLYHGREDGVRAQLMEMKRRAENMTQQVQELQPYKELQLEQMARIRTLERELLHMRVEHTQLLHRVKRRFLDDKAAFEREARLYVQSLTRRSEREAARALISHTQAIKSDNGRLRYELLRLLHRARVLQDMRQQLLEQRDQLRREHEDVRNLDRIHGWLHRGPGGPPLWQLSQTQEPNLYTGPLATLLESSYTTLGAQVMAQSRATPRASSVAQSHRISETSSVTPQESLKAGSVISSLTPGSRGPSLSISHRSSRMSSLAQSRMNSRVTSLALSTNTSDLLPRSREDSRISTQTNLREFSQETDTSAKSSTKHLSVVSQDRVPLSPQLEEETASTDDATEVVLGQA", "length": 455, "header": "tr|A0A9J7FIL3-1|A0A9J7FIL3_CRIGR Isoform 1 of Coiled-coil domain-containing protein 166 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc166 PE=4 SV=1 CANONICAL=A0A9J7FIL3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIL3/entry#A0A9J7FIL3-1", "sequence": { "sequence": "MAPKKRRGVGRKQVGDNAEVQLTERAQYLLREYSLLSDNLVACEQWVDQVLQDNAFLDREALRLREENRLYASYVSTHAQRCANTIVRLEDQNRVDLAHIRWQRAELASLYHGREDGVRAQLMEMKRRAENMTQQVQELQPYKELQLEQMARIRTLERELLHMRVEHTQLLHRVKRRFLDDKAAFEREARLYVQSLTRRSEREAARALISHTQAIKSDNGRLRYELLRLLHRARVLQDMRQQLLEQRDQLRREHEDVRNLDRIHGWLHRGPGGPPLWQLSQTQEPNLYTGPLATLLESSYTTLGAQVMAQSRATPRASSVAQSHRISETSSVTPQESLKAGSVISSLTPGSRGPSLSISHRSSRMSSLAQSRMNSRVTSLALSTNTSDLLPRSREDSRISTQTNLREFSQETDTSAKSSTKHLSVVSQDRVPLSPQLEEETASTDDATEVVLGQA", "length": 455, "header": "tr|A0A9J7FIL3-1|A0A9J7FIL3_CRIGR Isoform 1 of Coiled-coil domain-containing protein 166 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc166 PE=4 SV=1 CANONICAL=A0A9J7FIL3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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[ { "database": "UniProtKB", "id": "A0A9J7FIS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 59 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIU4-1", "uniprot_ac": "A0A9J7FIU4", "uniprot_id": "A0A9J7FIU4_CRIGR", "mass": { "chemical_mass": 52850.0, "monoisotopic_mass": 52850.0 }, "refseq": { "ac": "XP_027261175", "name": "ankyrin repeat domain-containing protein 18A isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261175" }, "gene_names": [ { "name": "LOC100772170", "type": "recommended", "evidence": [ { "id": "A0A9J7FIU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4" } ] }, { "name": "LOC100772170", "type": "synonym", "evidence": [ { "id": "XP_027261175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261175" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 18A isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FIU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 18A isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027261175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261175" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261175", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261175" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIU4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772170", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FIU4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FIU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772170", "url": "https://www.ncbi.nlm.nih.gov/gene/100772170", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772170", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIU4", "url": "https://www.orthodb.org/?gene=A0A9J7FIU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147:SF73", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147:SF73", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261175", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261175", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIU4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGKYSLERWRWPGCSGGFSVLCGKQKKSLVETPLGFCDIEAQGNNLSFGTQNPSYLDMAYFPDNDLHMAACAGDLPFVRLYFTLGKYDVNHRDKDNRNALHFACFYGHLDMVNYLWRRGCQINVCDKHNITPLMKAVQSWEEEIVCYLLERHANLHIRDSSGNTAFHYAVYGGKPAMAARLLQYGANIEERTKDNLTPLLLALRENRLHMAQFLIKMEASVHAVDSHRRNSLMYAVRCDSSVMVNLLLQQGVDMNFKDLFGWTALRYAIEGDREVRTVLLDYEYTLIQSLRQNNSGKTSFGSCIPEEKCQVSRPWDTCRGKLQTGCGTSPRDKCVVVNKAERSWRLEELLNRDTEFRVCPAGFRSCFGPIFSHYVPFPLFWKAPQSSENYSSIRPTNKADAGTTSSTATENMIEMQDPLTTNEAGVKKTETCQPAEPGAAMISLKKEISCNETIKNSQQDLTIHSV", "length": 467, "header": "tr|A0A9J7FIU4-1|A0A9J7FIU4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 18A isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772170 PE=4 SV=1 CANONICAL=A0A9J7FIU4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4/entry#A0A9J7FIU4-1", "sequence": { "sequence": "MGGKYSLERWRWPGCSGGFSVLCGKQKKSLVETPLGFCDIEAQGNNLSFGTQNPSYLDMAYFPDNDLHMAACAGDLPFVRLYFTLGKYDVNHRDKDNRNALHFACFYGHLDMVNYLWRRGCQINVCDKHNITPLMKAVQSWEEEIVCYLLERHANLHIRDSSGNTAFHYAVYGGKPAMAARLLQYGANIEERTKDNLTPLLLALRENRLHMAQFLIKMEASVHAVDSHRRNSLMYAVRCDSSVMVNLLLQQGVDMNFKDLFGWTALRYAIEGDREVRTVLLDYEYTLIQSLRQNNSGKTSFGSCIPEEKCQVSRPWDTCRGKLQTGCGTSPRDKCVVVNKAERSWRLEELLNRDTEFRVCPAGFRSCFGPIFSHYVPFPLFWKAPQSSENYSSIRPTNKADAGTTSSTATENMIEMQDPLTTNEAGVKKTETCQPAEPGAAMISLKKEISCNETIKNSQQDLTIHSV", "length": 467, "header": "tr|A0A9J7FIU4-1|A0A9J7FIU4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 18A isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772170 PE=4 SV=1 CANONICAL=A0A9J7FIU4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FK28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4/entry#A0A9J7FK28-1", "sequence": { "sequence": "MVNYLWRRGCQINVCDKHNITPLMKAVQSWEEEIVCYLLERHANLHIRDSSGNTAFHYAVYGGKPAMAARLLQYGANIEERTKDNLTPLLLALRENRLHMAQFLIKMEASVHAVDSHRRNSLMYAVRCDSSVMVNLLLQQGVDMNFKDLFGWTALRYAIEGDREVRTVLLDYEYTLIQSLRQNNSGKTSFGSCIPEEKCQVSRPWDTCRGKLQTGCGTSPRDKCVVVNKAERSWRLEELLNRDTEFRVCPAGFRSCFGPIFSHYVPFPLFWKAPQSSENYSSIRPTNKADAGTTSSTATENMIEMQDPLTTNEAGVKKTETCQPEPGAAMISLKKEISCNETIKNSQQDLTIHSV", "length": 355, "header": "tr|A0A9J7FK28-1|A0A9J7FK28_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 19 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100772170 PE=4 SV=1 CANONICAL=A0A9J7FIU4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIU4/entry#A0A9J7FNL2-1", "sequence": { "sequence": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FIY6-1", "uniprot_ac": "A0A9J7FIY6", "uniprot_id": "A0A9J7FIY6_CRIGR", "mass": { "chemical_mass": 40793.0, "monoisotopic_mass": 40793.0 }, "refseq": { "ac": "XP_027258075", "name": "uncharacterized protein C1orf141 homolog", 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 19% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258075" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIY6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf141", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIY6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FIY6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FIY6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750986", "url": "https://www.ncbi.nlm.nih.gov/gene/100750986", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750986", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750986", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIY6", "url": "https://www.orthodb.org/?gene=A0A9J7FIY6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36873", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36873", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36873:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36873:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258075", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKHLPTIHEALGSIPSPEQQAVYANPLNSLQSWPRNQCKCLPESSILYPIPAGQSKASKEKVSTPFTGQNERRAKKSMHSTDHSADSIENGRKYHPWVNNLITKEKKSDRDKQARTPCPVNQNVFLPLHIEDVLKNPEIKIIDLGPTDRVLYFMEESHTNPIIFHDTAYIEMLFLAKRFTPYMMTYTTKNVVLEKNLEMLKELFNNQSSYVSNPQSPKPVSKYKDLLIFSSQLVQERINEKRKKKQDSLVSKNRCPSTLYNLSRTLSSITKKFVGYFDKDATQEKSDEIDEFERTFSKTKPSATRKLTTLPIKSDSKPLKNIFEIRKLNNITPLDNLVSWKANDPKNRIHINI", "length": 354, "header": "tr|A0A9J7FIY6-1|A0A9J7FIY6_CRIGR Isoform 1 of Uncharacterized protein C1orf141 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf141 PE=4 SV=1 CANONICAL=A0A9J7FIY6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIY6/entry#A0A9J7FIY6-1", "sequence": { "sequence": "MVKHLPTIHEALGSIPSPEQQAVYANPLNSLQSWPRNQCKCLPESSILYPIPAGQSKASKEKVSTPFTGQNERRAKKSMHSTDHSADSIENGRKYHPWVNNLITKEKKSDRDKQARTPCPVNQNVFLPLHIEDVLKNPEIKIIDLGPTDRVLYFMEESHTNPIIFHDTAYIEMLFLAKRFTPYMMTYTTKNVVLEKNLEMLKELFNNQSSYVSNPQSPKPVSKYKDLLIFSSQLVQERINEKRKKKQDSLVSKNRCPSTLYNLSRTLSSITKKFVGYFDKDATQEKSDEIDEFERTFSKTKPSATRKLTTLPIKSDSKPLKNIFEIRKLNNITPLDNLVSWKANDPKNRIHINI", "length": 354, "header": "tr|A0A9J7FIY6-1|A0A9J7FIY6_CRIGR Isoform 1 of Uncharacterized protein C1orf141 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf141 PE=4 SV=1 CANONICAL=A0A9J7FIY6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258169", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258169" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ldlrad1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJ22", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJ22", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771340", "url": "https://www.ncbi.nlm.nih.gov/gene/100771340", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050685", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050685", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057430", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057430", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771340", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771340", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJ22", "url": "https://www.orthodb.org/?gene=A0A9J7FJ22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258169", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258169", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKIFPQGDAESNTAAGGKARPGEEGCGPFCCSRRGACLSAFLMLVLAMLATLLAVATILGRPPRIPGTQSCVTMTNRTGFLCHDRRHCIPAHGVCDGILTCPYGEDEDERLCRDVPRSLPSFLLAYCGDPASWIYSDQKCDGTNNCGDCSDELSPVTACPPCGPGWWRCTPTVFKYCSCIPRVLCQDHVQHCSDWSDEYVCPGP", "length": 205, "header": "tr|A0A9J7FJ22-1|A0A9J7FJ22_CRIGR Isoform 1 of Low-density lipoprotein receptor class A domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ldlrad1 PE=4 SV=1 CANONICAL=A0A9J7FJ22-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22/entry#A0A9J7FJ22-1", "sequence": { "sequence": "MNKIFPQGDAESNTAAGGKARPGEEGCGPFCCSRRGACLSAFLMLVLAMLATLLAVATILGRPPRIPGTQSCVTMTNRTGFLCHDRRHCIPAHGVCDGILTCPYGEDEDERLCRDVPRSLPSFLLAYCGDPASWIYSDQKCDGTNNCGDCSDELSPVTACPPCGPGWWRCTPTVFKYCSCIPRVLCQDHVQHCSDWSDEYVCPGP", "length": 205, "header": "tr|A0A9J7FJ22-1|A0A9J7FJ22_CRIGR Isoform 1 of Low-density lipoprotein receptor class A domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ldlrad1 PE=4 SV=1 CANONICAL=A0A9J7FJ22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ22/entry#A0A9J7GQ90-1", "sequence": { "sequence": "MNKIFPQGDAESNTAAGGKARPGEEGDVPRSLPSFLLAYCGDPASWIYSDQKCDGTNNCGDCSDELSPVTACPPCGPGWWRCTPTVFKYCSCIPRVLCQDHVQHCSDWSDEYVCPGP", "length": 117, "header": "tr|A0A9J7GQ90-1|A0A9J7GQ90_CRIGR Computationally mapped isoform of Low-density lipoprotein receptor class A domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ldlrad1 PE=4 SV=1 CANONICAL=A0A9J7FJ22-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614157.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505564" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772566", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJ50", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJ50", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772566", "url": "https://www.ncbi.nlm.nih.gov/gene/100772566", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772566", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772566", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHTKVNG", "url": "https://omabrowser.org/oma/group/FHTKVNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FJ50", "url": "https://www.orthodb.org/?gene=A0A9J7FJ50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF76", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF76", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505564", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLLLLLLLVLGLELILVCVHAEGKTGLIGKNFNPEKIKGKWYTIGLASDKREKIEEQGSMRVFVEYIRVFENSSLAFKFHTIVNGECTELYVVCDKTAEDGEYEVEYDGSNRFTILDTDYDDYIIIHLKNIKNGKKFQLMELYGRKPELSSNIKEKFEELSKKHGIVKENILDLTEADRCLQARDGEKA", "length": 190, "header": "tr|A0A9J7FJ50-1|A0A9J7FJ50_CRIGR Isoform 1 of Major urinary protein 20 OS=Cricetulus griseus OX=10029 GN=LOC100772566 PE=3 SV=1 CANONICAL=A0A9J7FJ50-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50/entry#A0A9J7FJ50-1", "sequence": { "sequence": "MKLLLLLLLVLGLELILVCVHAEGKTGLIGKNFNPEKIKGKWYTIGLASDKREKIEEQGSMRVFVEYIRVFENSSLAFKFHTIVNGECTELYVVCDKTAEDGEYEVEYDGSNRFTILDTDYDDYIIIHLKNIKNGKKFQLMELYGRKPELSSNIKEKFEELSKKHGIVKENILDLTEADRCLQARDGEKA", "length": 190, "header": "tr|A0A9J7FJ50-1|A0A9J7FJ50_CRIGR Isoform 1 of Major urinary protein 20 OS=Cricetulus griseus OX=10029 GN=LOC100772566 PE=3 SV=1 CANONICAL=A0A9J7FJ50-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772566", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772566", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BJP1-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "LOC513329", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLLLLCLGLTLVCAQEGNSDVVRSNFDIPEIAGEWYSILLASDNREKIEENGSMRVFVEYIDVLENSSLLFKFHTKVNGVCTELSLVSDSTGEDGVFTISYDGENKFRILQVNYSQHIIFYLENFSNSFKLLELYAREPDTSPELKSEFVEICQKYGVVKENVIDLTKVDRCLQERGNGVA", "length": 182 }, "evidence": [ { "id": "A0A9J7FJ50", "url": "https://omabrowser.org/oma/group/A0A9J7FJ50/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SN92-1", "protein_name": "Salivary lipocalin", "gene_name": "SAL1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKLLFLLCLGLTLASSHKEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE", "length": 191 }, "evidence": [ { "id": "A0A9J7FJ50", "url": "https://omabrowser.org/oma/group/A0A9J7FJ50/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P11590-1", "protein_name": "Major urinary protein 4", "gene_name": "Mup4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLLLCLGLTLVCIHAEEATSKGQNLNVEKINGEWFSILLASDKREKIEEHGSMRVFVEHIHVLENSLAFKFHTVIDGECSEIFLVADKTEKAGEYSVMYDGFNTFTILKTDYDNYIMFHLINEKDGKTFQLMELYGRKADLNSDIKEKFVKLCEEHGIIKENIIDLTKTNRCLKARE", "length": 178 }, "evidence": [ { "id": "A0A9J7FJ50", "url": "https://omabrowser.org/oma/group/A0A9J7FJ50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "pmid": "" }, { "name": "pheromone binding", "id": "GO:0005550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005550", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FJ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ50" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 178, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FJ56-1", "uniprot_ac": "A0A9J7FJ56", "uniprot_id": "A0A9J7FJ56_CRIGR", "mass": { "chemical_mass": 238024.0, "monoisotopic_mass": 238024.0 }, "refseq": { "ac": "XP_027260496", "name": "general transcription factor 3C polypeptide 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260496" }, "gene_names": [ { "name": "Gtf3c1", "type": "recommended", "evidence": [ { "id": "A0A9J7FJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ] }, { "name": "Gtf3c1", "type": "synonym", "evidence": [ { "id": "XP_027260496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260496" } ] } ], "protein_names": [ { "name": "General transcription factor 3C polypeptide 1 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56/entry#names_and_taxonomy" } ] }, { "name": "general transcription factor 3C polypeptide 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027260496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260496" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260496", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260496" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gtf3c1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56", "locus": {} } ], "crossref": [ { "id": "cd16169", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16169", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763706", "url": "https://www.ncbi.nlm.nih.gov/gene/100763706", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056428", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056428", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763706", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763706", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJ56", "url": "https://www.orthodb.org/?gene=A0A9J7FJ56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15180:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15180:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04182", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04182", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24101", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24101", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260496", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260496", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FML6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FML6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FML6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FML6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDALESLLDEVALEGLDGLCLPALWSRLESRSPPFPLPLEPYTQEFLWRALATHPGISFYEEPRERPDLQLQDRYEEIDLETGILESRRDPVTLEDVYPIHMILENKDGIQGSCRYFKERKDITNNIRTKSLEPRCTMVEAFSRWGKKLIIVASQDMRYRALIGLEGDPDLKLPDFSYCILERLGRSRWQGELQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIRLPTGAQQHSILLLLNRFHVDRRSKYDILMEKLSMMLSTRSNQIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLPLQEIHPECGPCKTKKGTDVMVRCLKLLKEFKRKMEDDHDDDDDEEVISKGVPPVDIVFERDMLTQTYELIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVKGFMEDEGRQRTTKYISCVFAEESDLSRQYAREKARGELLTTVSLASVQDESLMPEGEEAFLSDSESEEESGCSGKRKGRGSRGHSRASGGAGSQPHHSTPAKGGWKVLNLHPLKKPKAASLRTAELRARRSSGARDGLDTSGSSELSASFDPHNMESHSGDIAVIEEVRLDNPKESGGSQKAGRHGPGQDKPHKTYRLLKRRNLIIEAVTNLRLIESLFTIQKMIMDQEKQEGVSTKCCKKSIIRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPLVRSAIEQVRFRISNSSTANRVKVPQTPAPQEEAEEESQEPEVPSGSGDSDPNTSLKSESGRVKKTEEKMGITPLKNYKPVIVPGLGRSIGFLPKMPRLRVMHLFLWYLVYGHPAGHTGEQPTYHSERKTGKQESSRPGAQPSSGNDWDTSEARDNTESSSWEAEMELSTEIVYVDEISWMRYVPPIPIHRDFGFGWALVSDILLCLPLSIFVQVVQVSYKVDNLEDFLNDPLKKHTLIRFLPRHIRQQLLYKRRYVFSVVENLQRLCYMGLLQFGPTEKFQDKDQVFVFLKKNAVIVDTTICDPHYNLAHSSRPFERRLYVLDSMQDVESYWFDLQCICLNTPLGVVRCPCAQKICADQGSDPEGNLRKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLVPGDGLGAAGLDSSFYAHLKRNWVWTSYIINKARKNNTPENGLTGRLQTFLSKRPMPLGSGGSGRLPLWSEGKADAELCADKEEQFELDREPTSGRNRKVRGGKNQKRKRLKKEPIRKIKRRRRGEQPGAKSKKLRYQDEADQNALRMMTRLRVSWSMQEDGLLMLCRIASNVLNTKVKGPFVTWQVVRDILHATFEESLDKTSHSVGRRARYIVKNPQAFMNYKVCLAEVYQDKALVGDFMSRKGNYEDPKVCAKEFKEFVEKLKEKFSSGLRNPNLEIPNTLQELFAKYRVLAIGDEKDRVRKEDELNSVEDIHFLVLQNLIQSTLSLSNSQSNSCQSFQIFRLYREFREPVLVRAFMECQKRSLVNRRRVSHSQGPKKNRAVPFVPMSYQLSQSYYKLFTWRFPTTICTESFQFYDRLRSAGILDQPDHFSFKDLDSSDPPSDLVAFSLDSPGGHCVTTLALFSLGLLSVDVRIPEQIVVVDSSMVESEVMKSLGKDGGLDDDDEEEDLDEGSGAKRQGVEVKAHQASHTKYLLMRGYYTMPGVVSTRNLNPNDSIVVNSCQVKFRLRSTPAPTQLGPTGFTATPLEELQAGPSCLPASFTSLVDPQLRTCCPEEFAHQMAQSGYSPEDMVASLEILQAVAAADCFGVDREKLSRQFSALEKTVGERTRTFSDYVQDLLEQQQVMEVGGNTVRLVAMASAHPWLLHSMRLKDTEVDTKASGDDSQARLPEGSIGEDHTFEATAVPPDSSHSTRKRAHCSIQSNETDAEEAIRLPAKRPTLQDVRVLANPRLGAEEQTEAQALTLLAAPEDAGAGIPRQENQESVGVSGLEQLGCEFQLPEGSEDPRGLTDSNMAQAAWESSCERVCFIGRPWRGVDGRLNMPVCKGMMEAVLYHIMSRPGVPESCLLQYYQGVLQPVAVLELLRGLESLGCIQKRLLKKPAVVSLFSKPVVEGLGQTSEIEAVSCHESTVTFYEPTLDCTIRLGRVFPHDVNWNKWIHL", "length": 2106, "header": "tr|A0A9J7FJ56-1|A0A9J7FJ56_CRIGR Isoform 1 of General transcription factor 3C polypeptide 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Gtf3c1 PE=4 SV=1 CANONICAL=A0A9J7FJ56-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56/entry#A0A9J7FJ56-1", "sequence": { "sequence": "MDALESLLDEVALEGLDGLCLPALWSRLESRSPPFPLPLEPYTQEFLWRALATHPGISFYEEPRERPDLQLQDRYEEIDLETGILESRRDPVTLEDVYPIHMILENKDGIQGSCRYFKERKDITNNIRTKSLEPRCTMVEAFSRWGKKLIIVASQDMRYRALIGLEGDPDLKLPDFSYCILERLGRSRWQGELQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIRLPTGAQQHSILLLLNRFHVDRRSKYDILMEKLSMMLSTRSNQIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLPLQEIHPECGPCKTKKGTDVMVRCLKLLKEFKRKMEDDHDDDDDEEVISKGVPPVDIVFERDMLTQTYELIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVKGFMEDEGRQRTTKYISCVFAEESDLSRQYAREKARGELLTTVSLASVQDESLMPEGEEAFLSDSESEEESGCSGKRKGRGSRGHSRASGGAGSQPHHSTPAKGGWKVLNLHPLKKPKAASLRTAELRARRSSGARDGLDTSGSSELSASFDPHNMESHSGDIAVIEEVRLDNPKESGGSQKAGRHGPGQDKPHKTYRLLKRRNLIIEAVTNLRLIESLFTIQKMIMDQEKQEGVSTKCCKKSIIRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPLVRSAIEQVRFRISNSSTANRVKVPQTPAPQEEAEEESQEPEVPSGSGDSDPNTSLKSESGRVKKTEEKMGITPLKNYKPVIVPGLGRSIGFLPKMPRLRVMHLFLWYLVYGHPAGHTGEQPTYHSERKTGKQESSRPGAQPSSGNDWDTSEARDNTESSSWEAEMELSTEIVYVDEISWMRYVPPIPIHRDFGFGWALVSDILLCLPLSIFVQVVQVSYKVDNLEDFLNDPLKKHTLIRFLPRHIRQQLLYKRRYVFSVVENLQRLCYMGLLQFGPTEKFQDKDQVFVFLKKNAVIVDTTICDPHYNLAHSSRPFERRLYVLDSMQDVESYWFDLQCICLNTPLGVVRCPCAQKICADQGSDPEGNLRKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLVPGDGLGAAGLDSSFYAHLKRNWVWTSYIINKARKNNTPENGLTGRLQTFLSKRPMPLGSGGSGRLPLWSEGKADAELCADKEEQFELDREPTSGRNRKVRGGKNQKRKRLKKEPIRKIKRRRRGEQPGAKSKKLRYQDEADQNALRMMTRLRVSWSMQEDGLLMLCRIASNVLNTKVKGPFVTWQVVRDILHATFEESLDKTSHSVGRRARYIVKNPQAFMNYKVCLAEVYQDKALVGDFMSRKGNYEDPKVCAKEFKEFVEKLKEKFSSGLRNPNLEIPNTLQELFAKYRVLAIGDEKDRVRKEDELNSVEDIHFLVLQNLIQSTLSLSNSQSNSCQSFQIFRLYREFREPVLVRAFMECQKRSLVNRRRVSHSQGPKKNRAVPFVPMSYQLSQSYYKLFTWRFPTTICTESFQFYDRLRSAGILDQPDHFSFKDLDSSDPPSDLVAFSLDSPGGHCVTTLALFSLGLLSVDVRIPEQIVVVDSSMVESEVMKSLGKDGGLDDDDEEEDLDEGSGAKRQGVEVKAHQASHTKYLLMRGYYTMPGVVSTRNLNPNDSIVVNSCQVKFRLRSTPAPTQLGPTGFTATPLEELQAGPSCLPASFTSLVDPQLRTCCPEEFAHQMAQSGYSPEDMVASLEILQAVAAADCFGVDREKLSRQFSALEKTVGERTRTFSDYVQDLLEQQQVMEVGGNTVRLVAMASAHPWLLHSMRLKDTEVDTKASGDDSQARLPEGSIGEDHTFEATAVPPDSSHSTRKRAHCSIQSNETDAEEAIRLPAKRPTLQDVRVLANPRLGAEEQTEAQALTLLAAPEDAGAGIPRQENQESVGVSGLEQLGCEFQLPEGSEDPRGLTDSNMAQAAWESSCERVCFIGRPWRGVDGRLNMPVCKGMMEAVLYHIMSRPGVPESCLLQYYQGVLQPVAVLELLRGLESLGCIQKRLLKKPAVVSLFSKPVVEGLGQTSEIEAVSCHESTVTFYEPTLDCTIRLGRVFPHDVNWNKWIHL", "length": 2106, "header": "tr|A0A9J7FJ56-1|A0A9J7FJ56_CRIGR Isoform 1 of General transcription factor 3C polypeptide 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Gtf3c1 PE=4 SV=1 CANONICAL=A0A9J7FJ56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FML6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56/entry#A0A9J7FML6-1", "sequence": { "sequence": "MDALESLLDEVALEGLDGLCLPALWSRLESRSPPFPLPLEPYTQEFLWRALATHPGISFYEEPRERPDLQLQDRYEEIDLETGILESRRDPVTLEDVYPIHMILENKDGIQGSCRYFKERKDITNNIRTKSLEPRCTMVEAFSRWGKKLIIVASQDMRYRALIGLEGDPDLKLPDFSYCILERLGRSRWQGELQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIRLPTGAQQHSILLLLNRFHVDRRSKYDILMEKLSMMLSTRSNQIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLPLQEIHPECGPCKTKKGTDVMVRCLKLLKEFKRKMEDDHDDDDDEEVISKGVPPVDIVFERDMLTQTYELIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVKGFMEDEGRQRTTKYISCVFAEESDLSRQYAREKARGELLTTVSLASVQDESLMPEGEEAFLSDSESEEESGCSGKRKGRGSRGHSRASGGAGSQPHHSTPAKGGWKVLNLHPLKKPKAASLRTAELRARRSSGARDGLDTSGSSELSASFDPHNMESHSGDIAVIEEVRLDNPKESGGSQKAGRHGPGQDKPHKTYRLLKRRNLIIEAVTNLRLIESLFTIQKMIMDQEKQEGVSTKCCKKSIIRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPLVRSAIEQVRFRISNSSTANRVKVPQTPAPQEEAEEESQEPEVPSGSGDSDPNTSLKSESGRVKKTEEKMGITPLKNYKPVIVPGLGRSIGFLPKMPRLRVMHLFLWYLVYGHPAGHTGEQPTYHSERKTGKQESSRPGAQPSSGNDWDTSEARDNTESSSWEAEMELSTEIVYVDEISWMRYVPPIPIHRDFGFGWALVSDILLCLPLSIFVQVVQVSYKVDNLEDFLNDPLKKHTLIRFLPRHIRQQLLYKRRYVFSVVENLQRLCYMGLLQFGPTEKFQDKDQVFVFLKKNAVIVDTTICDPHYNLAHSSRPFERRLYVLDSMQDVESYWFDLQCICLNTPLGVVRCPCAQKICADQGSDPEGNLRKEQESAMDKHNLERKCAMLEYTTGSREVVDEGLVPGDGLGAAGLDSSFYAHLKRNWVWTSYIINKARKNNTPENGLTGRLQTFLSKRPMPLGSGGSGRLPLWSEGKADAELCADKEEQFELDREPTSGRNRKVRGGKNQKRKRLKKEPIRKIKRRRRGEQPGAKSKKLRYQDEADQNALRMMTRLRVSWSMQEDGLLMLCRIASNVLNTKVKGPFVTWQVVRDILHATFEESLDKTSHSVGRRARYIVKNPQAFMNYKVCLAEVYQDKALVGDFMSRKGNYEDPKVCAKEFKEFVEKLKEKFSSGLRNPNLEIPNTLQELFAKYRVLAIGDEKDRVRKEDELNSVEDIHFLVLQNLIQSTLSLSNSQSNSCQSFQIFRLYREFREPVLVRAFMECQKRSLVNRRRVSHSQGPKKNRAVPFVPMSYQLSQSYYKLFTWRFPTTICTESFQFYDRLRSAGILDQPDHFSFKDLDSSDPPSDLVAFSLDSPGGHCVTTLALFSLGLLSVDVRIPEQIVVVDSSMVESEVMKSLGKDGGLDDDDEEEDLDEGSGAKRQGVEVKAHQASHTKYLLMRGYYTMPGVVSTRNLNPNDSIVVNSCQVKFRLRSTPAPTQLGPTGFTATPLEELQAGPSCLPASFTSLVDPQLRTCCPEEFAHQMAQSGYSPEDMVASLEILQAVAAADCFGVDREKLSRQFSALEKTVGERTRTFSDYVQDLLEQQQVMEVGGNTVRLVAMASAHPWLLHSMRLKDTEVDTKASGDDSQARLPEGSIGEDHTFEATAVPPDSSHSTRKRAHCSIQSNETDAEEAIRLPAKRPTLQDVRVLANPRLGAEEQTEAQALTLLAAPEDAGAGIPRQENQESVGVSGLEQLGCEFQLPEGSEDPRGLTDSNMAQAAWESCERVCFIGRPWRGVDGRLNMPVCKGMMEAVLYHIMSRPGVPESCLLQYYQGVLQPVAVLELLRGLESLGCIQKRLLKKPAVVSLFSKPVVEGLGQTSEIEAVSCHESTVTFYEPTLDCTIRLGRVFPHDVNWNKWIHL", "length": 2105, "header": "tr|A0A9J7FML6-1|A0A9J7FML6_CRIGR Computationally mapped isoform of General transcription factor 3C polypeptide 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Gtf3c1 PE=4 SV=1 CANONICAL=A0A9J7FJ56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763706", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763706", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription factor TFIIIC complex", "id": "GO:0000127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "5S class rRNA transcription by RNA polymerase III", "id": "GO:0042791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042791", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1140, "end_pos": 1142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1660, "end_pos": 1662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1870, "end_pos": 1872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 666, "end_pos": 668, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" }, { "id": "PF04182", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04182" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B-block binding subunit of TFIIIC", "eco_id": "ECO_0000259", "start_pos": 174, "end_pos": 249, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" }, { "id": "PF24101", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24101" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GTF3C1 extended winged-helix", "eco_id": "ECO_0000259", "start_pos": 610, "end_pos": 718, "start_aa": "His", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ56" }, { "id": "PF23704", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23704" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "General transcription factor 3C polypeptide 1 winged-helix", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 70, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1140, "end_pos": 1142 }, { "start_pos": 1660, "end_pos": 1662 }, { "start_pos": 1870, "end_pos": 1872 }, { "start_pos": 666, "end_pos": 668 }, { "start_pos": 717, "end_pos": 719 }, { "start_pos": 755, "end_pos": 757 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647376", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAGAQRQPDAQNGATVGLAQLAEITECPGPGPGEKCLVPAHETCRTPSEDKYSVGHSFEPELQEEGINRGEEGLNPGVEAGEERGPKPTSSIVRPSHGPKRKPIKPLVPGLGTPALPGPSYHAHPRAEAELPPGLLLQKEEPEGSHSESSLSAKQHKKAKKRKSVGAPVPPALAGTSTPTETLGLERKAQRLRPLYQYINYCNPELNQAGDGDREPEVEPESELALAPEEAGVEQLQLQALLPVTGELGLGLAMPCPNTLAPLTHTLPPLGQEVGEQPGGLSSLRMSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "length": 324, "header": "tr|A0A9J7FJJ4-1|A0A9J7FJJ4_CRIGR Isoform 1 of Uncharacterized protein C16orf86 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH16orf86 PE=4 SV=1 CANONICAL=A0A9J7FJJ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4/entry#A0A9J7FJJ4-1", "sequence": { "sequence": "MASAGAQRQPDAQNGATVGLAQLAEITECPGPGPGEKCLVPAHETCRTPSEDKYSVGHSFEPELQEEGINRGEEGLNPGVEAGEERGPKPTSSIVRPSHGPKRKPIKPLVPGLGTPALPGPSYHAHPRAEAELPPGLLLQKEEPEGSHSESSLSAKQHKKAKKRKSVGAPVPPALAGTSTPTETLGLERKAQRLRPLYQYINYCNPELNQAGDGDREPEVEPESELALAPEEAGVEQLQLQALLPVTGELGLGLAMPCPNTLAPLTHTLPPLGQEVGEQPGGLSSLRMSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "length": 324, "header": "tr|A0A9J7FJJ4-1|A0A9J7FJJ4_CRIGR Isoform 1 of Uncharacterized protein C16orf86 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH16orf86 PE=4 SV=1 CANONICAL=A0A9J7FJJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4/entry#A0A9J7GU88-1", "sequence": { "sequence": "MASAGAQRQPDAQNGATVGLAQLAEITECPGPGPGEKCLVPAHETCRTPSEDKYSVGHSFEPELQEEGINRGEEGLNPGVEAGEERGPKPTSSIVRPSHGPKRKPIKPLVPGLGTPALPGPSYHAHPRAEAELPPGLLLQKEEPEGSHSESSLSAKQHKKAKKRKSVGAPVPPALAGTSTPTETLGLERKAQRLRPLYQYINYCNPELNQAGDGDREPEVEPESELALAPEEAGVEQLQLQALLPVTGQEVGEQPGGLSSLRMSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "length": 299, "header": "tr|A0A9J7GU88-1|A0A9J7GU88_CRIGR Computationally mapped isoform of Uncharacterized protein C16orf86 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH16orf86 PE=4 SV=1 CANONICAL=A0A9J7FJJ4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 91, "start_aa": "Thr", "end_pos": 91, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr91", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJJ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764389", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764389", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZAQ5-1", "protein_name": "Uncharacterized protein C16orf86 homolog", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASAGAKRQPEAQNGAAVGLAQVAEIPECPGTEECLVPAHETCSTPGEDRCPVGHSLEPELQEEGINLGEEGLNPGVEAGEERGPKPTSSIVRPAHGPKRKAEAELPPGLLLQKEEPEGSHSESSLSSKQHKKAKKRKSVGAPVPPAVASASAPTETLGLEPFAVPWVLAGKAQRLRPLYQYINYCNPELNQAGDGDREPEAEPESELALAPEEAGVEQLQLQTLLPMAGELGLGLALPCPNPLAPLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "length": 306 }, "evidence": [ { "id": "A0A9J7FJJ4", "url": "https://omabrowser.org/oma/group/A0A9J7FJJ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MWK0-1", "protein_name": "Chromosome 18 C16orf86 homolog", "gene_name": "C18H16orf86", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSAGAEKRPGAQEGIAVGQSQLTEVAGGHAQNSECPVMRDQCLVPAHESCQTQGEDKCPIRSTSEQKIQERLKLEEDRHKPEVEALEERGPRPMASTVRPSHGPKRKPVSLFPSLAGPSHQAHPRAESELPQGLLLQREEPENNQSEPSPTAKQHKKAKKRKSLGTPVLPVVASTVSAPSVTLGPERKAQRLRPLYQYINYCNPELNQAGEGDREAEAEVEPESELTMVPEEAGVEKLQALLPVAGELGSDLTLPCPSMSVPPTHTLVPLGEEASEEPEGLPSLGVSGCLKAEMDKSTQVDINKMLSVCNAPLVPPLSPQYK", "length": 323 }, "evidence": [ { "id": "A0A9J7FJJ4", "url": "https://omabrowser.org/oma/group/A0A9J7FJJ4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "I3LHH2-1", "protein_name": "Chromosome 6 C16orf86 homolog", "gene_name": "C6H16orf86", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASAGDERRPGTQEKTAVGLAQLTEVPTDQCLEPALVACQTQGEDKCPTGAVSEPELLEERLKMEEKRLKPVAEALEERGPRPITSIVKPNHGPKRKAEAELPQGLLLQKEELENSQSEPSPSAKQHKKAKKRKSLGTPVLPVVASTVSVPSETLGLEPPALLWVLAGKAQRLRPLYQYINYCNPELNQAGEGDREAEAEVEPEVELTLVPEEAGVEQLQALLPMAGELGPGLTLPCPNMFVCPAHPLVPLGEEAGEESGGLPSLGVSSHLKAEVDKSTHVDINKMLSVCAAPLVPPLSPQYK", "length": 303 }, "evidence": [ { "id": "A0A9J7FJJ4", "url": "https://omabrowser.org/oma/group/A0A9J7FJJ4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6ZW13-1", "protein_name": "Uncharacterized protein C16orf86", "gene_name": "C16orf86", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASAGAERRPGVQEATVVGQGQLTEEPGSAQTSECPVAGDQFLVPAHEARGTQSEDQRPAGAASESELQEEGPKLGEERPKPHAGALEERGPRPVVSIVRPRHGPKRKPVKSLSLPGLRAHLKAEAELPPKLPLQEEEPEDSQSEPSPSAKQHKKAKKRKSLGAPVLHAVASMVSAPLETLRLERKAQRLRPLYQYVNYCNPELNQAGKGDGEAEVEAEAELAPVPEEGGVEQLQALLPLAGELGPGLALPCPSPLVTPTHALAPLGEEAGEEPGGLPSLGVSDHKAEVDKSTQVDIDKMLSVCTAPLVPPLSPQYK", "length": 317 }, "evidence": [ { "id": "A0A9J7FJJ4", "url": "https://omabrowser.org/oma/group/A0A9J7FJJ4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4A5-1", "protein_name": "Uncharacterized protein C16orf86 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASEGAKRQPETQNGAAVGLAQVAESLECPGTEECLVPAHETCRSPGEDKCPVGHSLEPELQEEGIKVGEEGLNAGVEAGEERGPKPTSSIVRPAHGPKRKSEVELPPGVLQKKEEPEGSHSESSLSSKQHKKAKKRKSGGAPVPPAVASASAPAAETLGLEPFALPWVLAGKAQRLRPLYQYINYCNPELNQEEDGDREPEVEPEAELALVPEEPGVEQLQLQTLLPVAGELGLGLALPCPNPLVPLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK", "length": 307 }, "evidence": [ { "id": "A0A9J7FJJ4", "url": "https://omabrowser.org/oma/group/A0A9J7FJJ4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 91 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FJK5-1", "uniprot_ac": "A0A9J7FJK5", "uniprot_id": "A0A9J7FJK5_CRIGR", "mass": { "chemical_mass": 54942.0, "monoisotopic_mass": 54942.0 }, "refseq": { "ac": "XP_027261983", "name": "LOW QUALITY PROTEIN: atherin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261983" }, "gene_names": [ { "name": "Samd1", "type": "recommended", "evidence": [ { "id": "A0A9J7FJK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5" } ] }, { "name": "Samd1", "type": "synonym", "evidence": [ { "id": "XP_027261983", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261983" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: atherin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027261983", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261983" }, { "id": "A0A9J7FJK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261983", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261983" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Samd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5", "locus": {} } ], "crossref": [ { "id": "cd09583", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09583", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760482", "url": "https://www.ncbi.nlm.nih.gov/gene/100760482", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760482", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760482", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJK5", "url": "https://www.orthodb.org/?gene=A0A9J7FJK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36292:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36292:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21524", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21524", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24971", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24971", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261983", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261983", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPAARPPRGPAAPPPTPARAAAPAPPRPGRPARRRHSAPFSGPAQPGPRXQRAAPLAAPPPAPAAPPASAPPAGPRRAPPPAVAAREPPPPAPPQQQQPPPPQPQPPPXGGAARAGGPARPVSLREVVRYLGGSGGASGRLTRGRVQGLLEEEAARGRLERTRLGALALPRGDRPGRAPPAASARAARSKRGGEERVFEKEEEEDDEEEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKERVKEWSPCGPYQGQDEGRGPAPGSCTRQVFSMTATNKEGGSACVAAAPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPSDPVEWTVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHIKVLQQGHFEDDDPDGFLG", "length": 519, "header": "tr|A0A9J7FJK5-1|A0A9J7FJK5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: atherin isoform X2 OS=Cricetulus griseus OX=10029 GN=Samd1 PE=4 SV=1 CANONICAL=A0A9J7FJK5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJK5-1", "url": 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"site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 124, "start_aa": "Thr", "end_pos": 124, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr124", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258738", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258738", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIVTWEALVQDPPPWVRPFLHPKGPSLLPPSNRSNRPIPSAPTPPTPLIPPNPPSHSNLYPTAVKDTKAKEKKTPKVLPPGEDQLVDLLTEEPPPYPPLPPPPEAEADSAAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGGNGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPHWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 447, "header": "tr|A0A9J7FJS9-1|A0A9J7FJS9_CRIGR Isoform 1 of Uncharacterized protein LOC113834353 OS=Cricetulus griseus OX=10029 GN=LOC113834353 PE=4 SV=1 CANONICAL=A0A9J7FJS9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJS9/entry#A0A9J7FJS9-1", "sequence": { "sequence": 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"name": "trace amine-associated receptor 7e", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258757" }, "gene_names": [ { "name": "LOC100752958", "type": "recommended", "evidence": [ { "id": "A0A9J7FJT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJT9" } ] }, { "name": "LOC100752958", "type": "synonym", "evidence": [ { "id": "XP_027258757", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258757" } ] } ], "protein_names": [ { "name": "Trace amine-associated receptor 7e", "type": "synonym", "evidence": [ { "id": "A0A9J7FJT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJT9/entry#names_and_taxonomy" } ] }, { "name": "trace amine-associated receptor 7e", "type": "synonym", "evidence": [ { "id": "XP_027258757", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258757" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0001594", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FJT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJT9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259571" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJV9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam227a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJV9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FJV9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FJV9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751092", "url": "https://www.ncbi.nlm.nih.gov/gene/100751092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751092", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FJV9", "url": "https://www.orthodb.org/?gene=A0A9J7FJV9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33560", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33560", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33560:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33560:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14922", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14922", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259571", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSIKKMDTINVTALPMIAVDERMVISVNVRKALQSVLRKQLRDHPPTCIVGSLSEVNKKITEIDLGPSMLASTSAIEEYELEKMSLKEKTHGSLGDRVKRPKEESPCKGSELRNAKLIMTKRKTAEKNLLAELYQHPEFDETKPTKLPNGVDFCDMVGNVIRSEKNPLSGKSYCSDRELEKFLSSPFFSAMWLDSFWWIFHERYQPKKEIQNKLFDRIALNYAFLLFKTVRSHYVEALIKRLPSLLSKALYTSFCCCFPQSWFNTHEFKSAICDTMELWVSGTYPCPQSYDSWDYSELDPERFRREEMLQSSRLIRGREFSLFTCKKNSIQKVEQNKHKKFLPSQVSGEHRPDPSTPQSPETATTVGFLEYLSTSVEGTSCPVVPHFLKNGLLGLRLCTYERNMATATGSSSLYASQERDFSRGLTSEESTGYQHTMKDQPSSTLSSRKASQQVKRISEARACMSFCLKKSHPACKIPKMTLNKFNIYGNSPLLVYFFLNYSRLRPHGQDVLMNRSEKTKLIPDSVMTYADIICQVKKNMDTRRKKLRQLSQLHESEWTYFNSYLTELQENYMREVKIINKKVAEKRKANNVFLSPSILFDDLFDKKSRGNPHNEMAFLSRKKIKDVEERQKILSSSSSFQRPVDNYSLGLKSPYRIGSISSEAIASMTKVTQDMLFRLSPSIE", "length": 685, "header": "tr|A0A9J7FJV9-1|A0A9J7FJV9_CRIGR Isoform 1 of Protein FAM227A isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam227a PE=3 SV=1 CANONICAL=A0A9J7FJV9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJV9/entry#A0A9J7FJV9-1", "sequence": { "sequence": "MDSIKKMDTINVTALPMIAVDERMVISVNVRKALQSVLRKQLRDHPPTCIVGSLSEVNKKITEIDLGPSMLASTSAIEEYELEKMSLKEKTHGSLGDRVKRPKEESPCKGSELRNAKLIMTKRKTAEKNLLAELYQHPEFDETKPTKLPNGVDFCDMVGNVIRSEKNPLSGKSYCSDRELEKFLSSPFFSAMWLDSFWWIFHERYQPKKEIQNKLFDRIALNYAFLLFKTVRSHYVEALIKRLPSLLSKALYTSFCCCFPQSWFNTHEFKSAICDTMELWVSGTYPCPQSYDSWDYSELDPERFRREEMLQSSRLIRGREFSLFTCKKNSIQKVEQNKHKKFLPSQVSGEHRPDPSTPQSPETATTVGFLEYLSTSVEGTSCPVVPHFLKNGLLGLRLCTYERNMATATGSSSLYASQERDFSRGLTSEESTGYQHTMKDQPSSTLSSRKASQQVKRISEARACMSFCLKKSHPACKIPKMTLNKFNIYGNSPLLVYFFLNYSRLRPHGQDVLMNRSEKTKLIPDSVMTYADIICQVKKNMDTRRKKLRQLSQLHESEWTYFNSYLTELQENYMREVKIINKKVAEKRKANNVFLSPSILFDDLFDKKSRGNPHNEMAFLSRKKIKDVEERQKILSSSSSFQRPVDNYSLGLKSPYRIGSISSEAIASMTKVTQDMLFRLSPSIE", "length": 685, "header": "tr|A0A9J7FJV9-1|A0A9J7FJV9_CRIGR Isoform 1 of Protein FAM227A isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam227a PE=3 SV=1 CANONICAL=A0A9J7FJV9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FKA5-1", "uniprot_ac": "A0A9J7FKA5", "uniprot_id": "A0A9J7FKA5_CRIGR", "mass": { "chemical_mass": 55206.0, "monoisotopic_mass": 55206.0 }, "refseq": { "ac": "XP_027241535", "name": "interferon-induced protein with tetratricopeptide repeats 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241535" }, "gene_names": [ { "name": "LOC100772509", "type": "recommended", "evidence": [ { "id": "A0A9J7FKA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ] }, { "name": "LOC100772509", "type": "synonym", "evidence": [ { "id": "XP_027241535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241535" } ] } ], "protein_names": [ { "name": "Interferon-induced protein with tetratricopeptide repeats 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FKA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced protein with tetratricopeptide repeats 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027241535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241535" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616894.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027241535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241535" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772509", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FKA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FKA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772509", "url": "https://www.ncbi.nlm.nih.gov/gene/100772509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772509", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YERAKTC", "url": "https://omabrowser.org/oma/group/YERAKTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FKA5", "url": "https://www.orthodb.org/?gene=A0A9J7FKA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGK5", "url": "https://www.orthodb.org/?gene=A0A9J7JGK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10271:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027241535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDFEGFPQETKLLRDHAGGDQVKENLLQLRCHFTWGLLIEDVDIPDLEMRIQEEVQFLDIKNPAGMHNLLAYVRHLKGQHEEALESVKEAEALTQKEKLDKRSLVTWGNCAWVHYNMDSLSEAQAYLDKVENTCKEFASPFRYRMECAEIDCEEGWALLKCGGQNYRRAMACFVKALEMEPENPEYNTGYAVAAYREDFDDHNFSLEPLRKAVSLNPEDPYLKVYLALKLQDVGETPEAETHIEEALSSTSCQNYVFRYAAKYYRRKGCIDKALHLLHRALQASPDSGYLHYQIGLCYSKQMIQLKTSRNQQPRSQGNLQELAEQAICEFQQTLKLRPTVEMAYVCMAEAQAELHQYEEAEANFQKALDMKSVKCHIEQDIHFRYGRFQQFHQKSEDKAITHYLKGLKIEESSFARRKLLKALEKVVERRVDHNIRPVESMGLLGLVHKLKGNMQEALLCYERALRLTGEMNPVF", "length": 476, "header": "tr|A0A9J7FKA5-1|A0A9J7FKA5_CRIGR Isoform 1 of Interferon-induced protein with tetratricopeptide repeats 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100772509 PE=3 SV=1 CANONICAL=A0A9J7FKA5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5/entry#A0A9J7FKA5-1", "sequence": { "sequence": "MRDFEGFPQETKLLRDHAGGDQVKENLLQLRCHFTWGLLIEDVDIPDLEMRIQEEVQFLDIKNPAGMHNLLAYVRHLKGQHEEALESVKEAEALTQKEKLDKRSLVTWGNCAWVHYNMDSLSEAQAYLDKVENTCKEFASPFRYRMECAEIDCEEGWALLKCGGQNYRRAMACFVKALEMEPENPEYNTGYAVAAYREDFDDHNFSLEPLRKAVSLNPEDPYLKVYLALKLQDVGETPEAETHIEEALSSTSCQNYVFRYAAKYYRRKGCIDKALHLLHRALQASPDSGYLHYQIGLCYSKQMIQLKTSRNQQPRSQGNLQELAEQAICEFQQTLKLRPTVEMAYVCMAEAQAELHQYEEAEANFQKALDMKSVKCHIEQDIHFRYGRFQQFHQKSEDKAITHYLKGLKIEESSFARRKLLKALEKVVERRVDHNIRPVESMGLLGLVHKLKGNMQEALLCYERALRLTGEMNPVF", "length": 476, "header": "tr|A0A9J7FKA5-1|A0A9J7FKA5_CRIGR Isoform 1 of Interferon-induced protein with tetratricopeptide repeats 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100772509 PE=3 SV=1 CANONICAL=A0A9J7FKA5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5/entry#A0A9J7JGK5-1", "sequence": { "sequence": "MGDHAGGDQVKENLLQLRCHFTWGLLIEDVDIPDLEMRIQEEVQFLDIKNPAGMHNLLAYVRHLKGQHEEALESVKEAEALTQKEKLDKRSLVTWGNCAWVHYNMDSLSEAQAYLDKVENTCKEFASPFRYRMECAEIDCEEGWALLKCGGQNYRRAMACFVKALEMEPENPEYNTGYAVAAYREDFDDHNFSLEPLRKAVSLNPEDPYLKVYLALKLQDVGETPEAETHIEEALSSTSCQNYVFRYAAKYYRRKGCIDKALHLLHRALQASPDSGYLHYQIGLCYSKQMIQLKTSRNQQPRSQGNLQELAEQAICEFQQTLKLRPTVEMAYVCMAEAQAELHQYEEAEANFQKALDMKSVKCHIEQDIHFRYGRFQQFHQKSEDKAITHYLKGLKIEESSFARRKLLKALEKVVERRVDHNIRPVESMGLLGLVHKLKGNMQEALLCYERALRLTGEMNPVF", "length": 463, "header": "tr|A0A9J7JGK5-1|A0A9J7JGK5_CRIGR Computationally mapped isoform of Interferon-induced protein with tetratricopeptide repeats 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772509 PE=3 SV=1 CANONICAL=A0A9J7FKA5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772509", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772509", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FCM5-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 11", "gene_name": "ifit11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEQSYSQDSLQLKLDQLDCHFTWDIRKDDLDLTNVLNRLEEQVKMGLGREEGVARTHCSLGYAKCLLGNKEEALTHLSRSETLIKEKLGNNCDKTLIVTYGNFAWMNYQMENYTECESYLVKLQKIHEMFPAESVPEVLGEKGWAYLKFSYKYYDRAVEAFQKAVELDPENSEWNAGYATALYRIETALNPFRTEMDTPCIVDSPAIKQLRLAISINPDDDSLRALLGLRLFLCSKKLMKESEKLMETALNGSPEHPHVTRYVAKFFRNQGSVDRSIELLETALQKSPNSGFIHHQLAMCYKTKKIDLQKEKGDRHQINNARNQCIYYLEKATSLKDSFIIAMCELAMQYGEKHELSKAEGLFKKTFITAKEKNECIHIVHCYYAEFQQYSNRCELLAIEHYKKCLTMNPDSSEGNRSAYKLMNIAKKHLKANPNNWDAHEILGLIYQKKGEMFGDTKSYAGTGDEENDECLHNLLEINCKI", "length": 483 }, "evidence": [ { "id": "A0A9J7FKA5", "url": "https://omabrowser.org/oma/group/A0A9J7FKA5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1LPS6-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 1", "gene_name": "Ifit1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMNRMKHAQEPISYGSEFRVSIYTELRENADGDQVMENLLQLRCHFTWGLLFEKNDIPDLEVRISEQVQFLDIKNSLGMHNLQAYVRHLKGEQEEALQSLKEAEALIEGEQLGKRSLVTWGNCAWVHYHRGSLAEAQIYLDKVENVCREFSSPFHYRMECAEIDCEEGWALLKCGGSNYMRAMACFAKALQVDPENPEYNAGYAVVAYRQDFDDNHVSLEPLRKAVRLNPEDPHLKVLLALKLQDLGEQDEAETHIEEALSSTSCQSYVFRYAAKYFRRKGDINEALHLLHRALQTSPSSGYLHYQKGLCYKQQMIQLKTSGNRQARRQENIQELAHQAICEFQETLNLRPTFEMAYVCMAEMQAEIGQYEEAEGNFQEALNLNNLVAHIEQDIHFRYGRFQQFHKKSEDKAITHYLKGLKLEEKSFAWRKLLTALEKVAERRVRQNVRLVESTSLLGLVFKLKGQEMKALLYYEKALRLSGEMNPAF", "length": 488 }, "evidence": [ { "id": "A0A9J7FKA5", "url": "https://omabrowser.org/oma/group/A0A9J7FKA5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5T764-1", "protein_name": "Protein IFIT1 homolog B", "gene_name": "IFIT1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAYVKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETYAEIGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLNALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAADLNPIF", "length": 474 }, "evidence": [ { "id": "A0A9J7FKA5", "url": "https://omabrowser.org/oma/group/A0A9J7FKA5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64282-1", "protein_name": "Antiviral innate immune response effector IFIT1", "gene_name": "Ifit1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGENADGDQVMENLLQLRCHFTWKLLFENNDIPDLEVRISEQVQFLDIKNPLGMHNLLAYVRHLKGQQDEALQSLKEAEALIQSEQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRLECAEMDCEEGWALLKCGGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQISQLRTSRNRQPRRQDNVQELAQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAHIEQDIHLRYGRFLQFHKQSEDKAITLYLKGLKVEEKSFAWRKLLTALEKVAERRVCQNVHLVESTSLLGLVYKLKGQEKNALFYYEKALRLTGEMNPAF", "length": 463 }, "evidence": [ { "id": "A0A9J7FKA5", "url": "https://omabrowser.org/oma/group/A0A9J7FKA5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cellular response to interferon-alpha", "id": "GO:0035457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035457", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16166:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16166:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262378", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262378", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVFESLVVDVLNRLLGDYVVNLDKSQLSLGIWKGAVALKNLQIKENALSELDVPFKVKVGHIGSLKLKIPWKYLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKHLMEAKQQELKRIEEAKQKVVDQENPPEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQGKPLSFGISLQNLSMQTADQNWIPCLHDETMKLVRKLLRLDNLFAYWNVKSEMYYLNDYDESLEALRNGIVNENIVPEGYDFVFRPISANAKLQMNRRSDFDFSEPKINLAVELHTIVLELNKPQYFSLMELLESVDMMSQNLPYRKFKPDVPLHYHAKEWWAYAIYGILEVNVIPHLRMWSWKHIRDHRQKIKKYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKGGTKDPEDKAGWFSWLWTWSESDAKQQLEVKPGILEEMLTPEEKVSLYEAIGYSETAVDPTLPKTFEALKFFVHLKSMSIILRENHQKPELVDIVVEGLSTSIVQRPGAQAIKFETKIDAFHITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCVIEAEPLEIIYDARTVNSIVDFFRPPKDVHLAQLTSATLTKLEEFRDKTAAGLLYIIETQKVLDLRINVKASYVIVPQNGIFSPTSNLLLLDLGHLKVTSKSRSGLPEMKTSGASLEEIMHKAYDSFDIHLTSIQLLYSRMGDNWKEARKLNVSTQHILTPMHVNVELSKALVFMDIKMPKFKISGTLPLVSLRISDKKLQGIMELFESIPKPEPITDVSAPARSFQNQASTSLPVSHISQKLIPLLEQPCHSENDSEEEFFDAPCSPLEARSQTVCRGKSSRQKKDCLMNLTQLGMRFEVAEVLIQFYHLVGDCELPVLETGALGLGTEVEIRTFDLQANAFLKELWVKCPEYLDEYKKPIYLVTTLDNTMEDLLTLEFVRAEKNAPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLGEQSVPVSVAETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEMIMKPLVTETNAKLRNIIVLDSDKMAIYKKAVYITGKEVFSLKMISYMDATAGSAYTDMNVVDVRVNLTVGCIQVVFVTKFLYSILAFIDNFQEVKNALAEATAQAAGMAADGVMELARRSSRFALDVNIKAPVVVIPQSPLSHNVFVADFGLITMKNTFVTITETQSNLPPVIDLITIKLSEMRLYRSQFMNDGYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKAHLKPMEFILSQEDLTTIFQTLYGNIWYERDVYVQSNVNKDQEIVTGGTTGVSYHLGASTVVTAAVVEVHPQASPVNTTLNLSFKTDYLTMALYSPGPEQAFFTDVRDPSLELAEFKLENIISSLKMYTDGSTFSSFSLKNCVLDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRKIRDTCVTDAVVQEMYVCASVEFLMTVARVFFDAYMTGSELETNVQTWTTKEAPVQGSETYEINILIKNPEIVFVADMTRNDAPALVITTQCEICYKSDTDNNTMTAAIKDLQVQACPFLPVKRKDKITTVLQPCDLFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSVLYTTKETIPEEKTSSIAHLWDKKDTKNLKMWFLEESNETEKVVPTSELMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLAKSRLLGESKNWSTLINLHIQLELEVHYYNEIFGVWEPLLEPLEIDQTDDFRPWNLGIKMKKKAKESIVESDSEEENYRVPEYKTVIGFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGSSAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPLAKSYELKDKESLSMDYVRTKDSDHFSAMTSLSSRLFFILLTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDMFEGSKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLESYRSSLSLKPEDEDYQMCEGIDFEEIIEYDGQLLKKKCRSIYPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVIHLWPPILIRNLLPYKIAYYLEGIENTVFNLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKSEFHIKPNQQDISFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGLKMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYHISVAEEGSDKWLSLDLEQCIPFWPETASNILLIRVERSEDPPKRIHFNKQESCILLRLNNELGGIIAEVNLAEHSTVITFSDYHDGAATFLIINHTKNDLVQYKQSSLNEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGEVTHKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESSPLEDKVIELDNNIPVRLTPSGNDMKVLQPHVIAVRRNYLPALKVEYNTSAHQSSLRIQIYRIQIQNQIHGAIFPFVFYAIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFVYAIADLIPKAEVTEKTEVEYFNKDVETFEQEYETVSSVDQSQINLFEYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSQ", "length": 3166, "header": "tr|A0A9J7FLN3-1|A0A9J7FLN3_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13A isoform X4 OS=Cricetulus griseus OX=10029 GN=Vps13a PE=3 SV=1 CANONICAL=A0A9J7FLN3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3/entry#A0A9J7FKL1-1", "sequence": { "sequence": "MVFESLVVDVLNRLLGDYVVNLDKSQLSLGIWKGAVALKNLQIKENALSELDVPFKVKVGHIGSLKLKIPWKYLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKHLMEAKQQELKRIEEAKQKVVDQENPPEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQGKPLSFGISLQNLSMQTADQNWIPCLHDETMKLVRKLLRLDNLFAYWNVKSEMYYLNDYDESLEALRNGIVNENIVPEGYDFVFRPISANAKLQMNRRSDFDFSEPKINLAVELHTIVLELNKPQYFSLMELLESVDMMSQNLPYRKFKPDVPLHYHAKEWWAYAIYGILEVNVIPHLRMWSWKHIRDHRQKIKKYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKGGTKDPEDKAGWFSWLWTWSESDAKQQLEVKPGILEEMLTPEEKVSLYEAIGYSETAVDPTLPKTFEALKFFVHLKSMSIILRENHQKPELVDIVVEGLSTSIVQRPGAQAIKFETKIDAFHITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCVIEAEPLEIIYDARTVNSIVDFFRPPKDVHLAQLTSATLTKLEEFRDKTAAGLLYIIETQKVLDLRINVKASYVIVPQNGIFSPTSNLLLLDLGHLKVTSKSRSGLPEMKTSGASLEEIMHKAYDSFDIHLTSIQLLYSRMGDNWKEARKLNVSTQHILTPMHVNVELSKALVFMDIKMPKFKISGTLPLVSLRISDKKLQGIMELFESIPKPEPITDVSAPARSFQNQASTSLPVSHISQKLIPLLEQPCHSENDSEEEFFDAPCSPLEARSQTVCRGKSSRQKKDCLMNLTQLGMRFEVAEVLIQFYHLVGDCELPVLETGALGLGTEVEIRTFDLQANAFLKELWVKCPEYLDEYKKPIYLVTTLDNTMEDLLTLEFVRAEKNAPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLGEQSVPVSVAETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEMIMKPLVTETNAKLRNIIVLDSDKMAIYKKAVYITGKEVFSLKMISYMDATAGSAYTDMNVVDVRVNLTVGCIQVVFVTKFLYSILAFIDNFQEVKNALAEATAQAAGMAADGVMELARRSSRFALDVNIKAPVVVIPQSPLSHNVFVADFGLITMKNTFVTITETQSNLPPVIDLITIKLSEMRLYRSQFMNDGYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKAHLKPMEFILSQEDLTTIFQTLYGNIWYERDVYVQSNVNKDQEIVTGGTTGVSYHLGASTVVTAAVVEVHPQASPVNTTLNLSFKTDYLTMALYSPGPEQAFFTDVRDPSLELAEFKLENIISSLKMYTDGSTFSSFSLKNCVLDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRKIRDTCVTDAVVQEMYVCASVEFLMTVARVFFDAYMTGSELETNVQTWTTKEAPVQGSETYEINILIKNPEIVFVADMTRNDAPALVITTQCEICYKSDTDNNTMTAAIKDLQVQACPFLPVKRKDKITTVLQPCDLFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSVLYTTKETIPEEKTSSIAHLWDKKDTKNLKMWFLEESNETEKVVPTSELMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLAKSRLLGESKNWSTLINLHIQLELEVHYYNEIFGVWEPLLEPLEIDQTDDFRPWNLGIKMKKKAKESIVESDSEEENYRVPEYKTVIGFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGSSAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPLAKSYELKDKESLSMDYVRTKDSDHFSAMTSLSSRLFFILLTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDMFEGSKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLESYRSSLSLKPEDEDYQMCEGIDFEEIIEYDGQLLKKKCRSIYPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVIHLWPPILIRNLLPYKIAYYLEGIENTVFNLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKSEFHIKPNQQDISFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGLKMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYHISVAEEGSDKWLSLDLEQCIPFWPETASNILLIRVERSEDPPKRIHFNKQESCILLRLNNELGGIIAEVNLAEHSTVITFSDYHDGAATFLIINHTKNDLVQYKQSSLNEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGEVTHKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESSPLEDKVIELDNNIPVRLTPSGNDMKVLQPHVIAVRRNYLPALKVEYNTSAHQSSLRIQIYRIQIQNQIHGAIFPFVFYAIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFVYAIADLIPKAEVTEKTEVEYFNKDVETFEQEYETVSSVDQSQINLFEYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQKIQAYREWIMTHSNSSDEEEES", "length": 3077, "header": "tr|A0A9J7FKL1-1|A0A9J7FLN3_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13A isoform X4 OS=Cricetulus griseus OX=10029 GN=Vps13a PE=3 SV=1 CANONICAL=A0A9J7FLN3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3/entry#A0A9J7FLN3-1", "sequence": { "sequence": "MVFESLVVDVLNRLLGDYVVNLDKSQLSLGIWKGAVALKNLQIKENALSELDVPFKVKVGHIGSLKLKIPWKYLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKHLMEAKQQELKRIEEAKQKVVDQENPPEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQGKPLSFGISLQNLSMQTADQNWIPCLHDETMKLVRKLLRLDNLFAYWNVKSEMYYLNDYDESLEALRNGIVNENIVPEGYDFVFRPISANAKLQMNRRSDFDFSEPKINLAVELHTIVLELNKPQYFSLMELLESVDMMSQNLPYRKFKPDVPLHYHAKEWWAYAIYGILEVNVIPHLRMWSWKHIRDHRQKIKKYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKGGTKDPEDKAGWFSWLWTWSESDAKQQLEVKPGILEEMLTPEEKVSLYEAIGYSETAVDPTLPKTFEALKFFVHLKSMSIILRENHQKPELVDIVVEGLSTSIVQRPGAQAIKFETKIDAFHITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCVIEAEPLEIIYDARTVNSIVDFFRPPKDVHLAQLTSATLTKLEEFRDKTAAGLLYIIETQKVLDLRINVKASYVIVPQNGIFSPTSNLLLLDLGHLKVTSKSRSGLPEMKTSGASLEEIMHKAYDSFDIHLTSIQLLYSRMGDNWKEARKLNVSTQHILTPMHVNVELSKALVFMDIKMPKFKISGTLPLVSLRISDKKLQGIMELFESIPKPEPITDVSAPARSFQNQASTSLPVSHISQKLIPLLEQPCHSENDSEEEFFDAPCSPLEARSQTVCRGKSSRQKKDCLMNLTQLGMRFEVAEVLIQFYHLVGDCELPVLETGALGLGTEVEIRTFDLQANAFLKELWVKCPEYLDEYKKPIYLVTTLDNTMEDLLTLEFVRAEKNAPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLGEQSVPVSVAETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEMIMKPLVTETNAKLRNIIVLDSDKMAIYKKAVYITGKEVFSLKMISYMDATAGSAYTDMNVVDVRVNLTVGCIQVVFVTKFLYSILAFIDNFQEVKNALAEATAQAAGMAADGVMELARRSSRFALDVNIKAPVVVIPQSPLSHNVFVADFGLITMKNTFVTITETQSNLPPVIDLITIKLSEMRLYRSQFMNDGYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKAHLKPMEFILSQEDLTTIFQTLYGNIWYERDVYVQSNVNKDQEIVTGGTTGVSYHLGASTVVTAAVVEVHPQASPVNTTLNLSFKTDYLTMALYSPGPEQAFFTDVRDPSLELAEFKLENIISSLKMYTDGSTFSSFSLKNCVLDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRKIRDTCVTDAVVQEMYVCASVEFLMTVARVFFDAYMTGSELETNVQTWTTKEAPVQGSETYEINILIKNPEIVFVADMTRNDAPALVITTQCEICYKSDTDNNTMTAAIKDLQVQACPFLPVKRKDKITTVLQPCDLFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSVLYTTKETIPEEKTSSIAHLWDKKDTKNLKMWFLEESNETEKVVPTSELMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLAKSRLLGESKNWSTLINLHIQLELEVHYYNEIFGVWEPLLEPLEIDQTDDFRPWNLGIKMKKKAKESIVESDSEEENYRVPEYKTVIGFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGSSAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPLAKSYELKDKESLSMDYVRTKDSDHFSAMTSLSSRLFFILLTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDMFEGSKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLESYRSSLSLKPEDEDYQMCEGIDFEEIIEYDGQLLKKKCRSIYPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVIHLWPPILIRNLLPYKIAYYLEGIENTVFNLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKSEFHIKPNQQDISFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGLKMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYHISVAEEGSDKWLSLDLEQCIPFWPETASNILLIRVERSEDPPKRIHFNKQESCILLRLNNELGGIIAEVNLAEHSTVITFSDYHDGAATFLIINHTKNDLVQYKQSSLNEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGEVTHKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESSPLEDKVIELDNNIPVRLTPSGNDMKVLQPHVIAVRRNYLPALKVEYNTSAHQSSLRIQIYRIQIQNQIHGAIFPFVFYAIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFVYAIADLIPKAEVTEKTEVEYFNKDVETFEQEYETVSSVDQSQINLFEYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSQ", "length": 3166, "header": "tr|A0A9J7FLN3-1|A0A9J7FLN3_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13A isoform X4 OS=Cricetulus griseus OX=10029 GN=Vps13a PE=3 SV=1 CANONICAL=A0A9J7FLN3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3/entry#A0A9J7FQA9-1", "sequence": { "sequence": "MVFESLVVDVLNRLLGDYVVNLDKSQLSLGIWKGAVALKNLQIKENALSELDVPFKVKVGHIGSLKLKIPWKYLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKHLMEAKQQELKRIEEAKQKVVDQENPPEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQGKPLSFGISLQNLSMQTADQNWIPCLHDETMKLVRKLLRLDNLFAYWNVKSEMYYLNDYDESLEALRNGIVNENIVPEGYDFVFRPISANAKLQMNRRSDFDFSEPKINLAVELHTIVLELNKPQYFSLMELLESVDMMSQNLPYRKFKPDVPLHYHAKEWWAYAIYGILEVNVIPHLRMWSWKHIRDHRQKIKKYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKGGTKDPEDKAGWFSWLWTWSESDAKQQLEVKPGILEEMLTPEEKVSLYEAIGYSETAVDPTLPKTFEALKFFVHLKSMSIILRENHQKPELVDIVVEGLSTSIVQRPGAQAIKFETKIDAFHITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCVIEAEPLEIIYDARTVNSIVDFFRPPKDVHLAQLTSATLTKLEEFRDKTAAGLLYIIETQKVLDLRINVKASYVIVPQNGIFSPTSNLLLLDLGHLKVTSKSRSGLPEMKTSGASLEEIMHKAYDSFDIHLTSIQLLYSRMGDNWKEARKLNVSTQHILTPMHVNVELSKALVFMDIKMPKFKISGTLPLVSLRISDKKLQGIMELFESIPKPEPITDVSAPARSFQNQASTSLPVSHISQKLIPLLEQPCHSENDSEEEFFDAPCSPLEARSQTVCRGKSSRQKKDCLMNLTQLGMRFEVAEVLIQFYHLVGDCELPVLETGALGLGTEVEIRTFDLQANAFLKELWVKCPEYLDEYKKPIYLVTTLDNTMEDLLTLEFVRAEKNAPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLGEQSVPVSVAETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEMIMKPLVTETNAKLRNIIVLDSDKMAIYKKAVYITGKEVFSLKMISYMDATAGSAYTDMNVVDVRVNLTVGCIQVVFVTKFLYSILAFIDNFQEVKNALAEATAQAAGMAADGVMELARRSSRFALDVNIKAPVVVIPQSPLSHNVFVADFGLITMKNTFVTITETQSNLPPVIDLITIKLSEMRLYRSQFMNDGYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKAHLKPMEFILSQEDLTTIFQTLYGNIWYERDVYVQSNVNKDQEIVTGGTTGVSYHLGASTVVTAAVVEVHPQASPVNTTLNLSFKTDYLTMALYSPGPEQAFFTDVRDPSLELAEFKLENIISSLKMYTDGSTFSSFSLKNCVLDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRKIRDTCVTDAVVQEMYVCASVEFLMTVARVFFDAYMTGSELETNVQTWTTKEAPVQGSETYEINILIKNPEIVFVADMTRNDAPALVITTQCEICYKSDTDNNTMTAAIKDLQVQACPFLPVKRKDKITTVLQPCDLFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSVLYTTKETIPEEKTSSIAHLWDKKDTKNLKMWFLEESNETEKVVPTSELMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLAKSRLLGESKNWSTLINLHIQLELEVHYYNEIFGVWEPLLEPLEIDQTDDFRPWNLGIKMKKKAKESIVESDSEEENYRVPEYKTVIGFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGSSAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPLAKSYELKDKESLSMDYVRTKDSDHFSAMTSLSSRLFFILLTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDMFEGSKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLESYRSSLSLKPEDEDYQMCEGIDFEEIIEYDGQLLKKKCRSIYPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVIHLWPPILIRNLLPYKIAYYLEGIENTVFNLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKSEFHIKPNQQDISFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGLKMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYHISVAEEGSDKWLSLDLEQCIPFWPETASNILLIRVERSEDPPKRIHFNKQESCILLRLNNELGGIIAEVNLAEHSTVITFSDYHDGAATFLIINHTKNDLVQYKQSSLNEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGEVTHKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESSPLEDKVIELDNNIPVRLTPSGNDMKVLQPHVIAVRRNYLPALKVEYNTSAHQSSLRIQIYRIQIQNQIHGAIFPFVFYAIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFVYAIADLIPKAEVTEKTEVEYFNKDVETFEQEYETVSSVDQSQINLFEYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQASKSLI", "length": 3061, "header": "tr|A0A9J7FQA9-1|A0A9J7FQA9_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13A isoform X5 OS=Cricetulus griseus OX=10029 GN=Vps13a PE=3 SV=1 CANONICAL=A0A9J7FLN3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKL1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKL1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762383", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762383", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein retention in Golgi apparatus", "id": "GO:0045053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045053", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" } ], "pmid": "" }, { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" } ], "pmid": "" }, { "name": "protein targeting to vacuole", "id": "GO:0006623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006623", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1144, "end_pos": 1146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1292, "end_pos": 1294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1384, "end_pos": 1386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1388, "end_pos": 1390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1585, "end_pos": 1587, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1696, "end_pos": 1698, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1749, "end_pos": 1751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1834, "end_pos": 1836, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1939, "end_pos": 1941, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2079, "end_pos": 2081, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2126, "end_pos": 2128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2174, "end_pos": 2176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2211, "end_pos": 2213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2291, "end_pos": 2293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2296, "end_pos": 2298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2311, "end_pos": 2313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2410, "end_pos": 2412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2530, "end_pos": 2532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2627, "end_pos": 2629, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3074, "end_pos": 3076, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" }, { "start_pos": 835, "end_pos": 837, "annotation": "n_glycosylation_sequon" }, { "start_pos": 871, "end_pos": 873, "annotation": "n_glycosylation_sequon" }, { "start_pos": 984, "end_pos": 986, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FLN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" }, { "id": "PF12624", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chorein N-terminal", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 846, "start_aa": "Val", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FLN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" }, { "id": "PF25037", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Intermembrane lipid transfer protein VPS13-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 3028, "end_pos": 3143, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FLN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" }, { "id": "PF25033", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VPS13-like middle region", "eco_id": "ECO_0000259", "start_pos": 1058, "end_pos": 1853, "start_aa": "Phe", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FLN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN3" }, { "id": "PF25036", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Vacuolar protein sorting-associated protein 13 VPS13 adaptor binding", "eco_id": "ECO_0000259", "start_pos": 1940, "end_pos": 2446, "start_aa": "His", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1144, "end_pos": 1146 }, { "start_pos": 1292, "end_pos": 1294 }, { "start_pos": 1384, "end_pos": 1386 }, { "start_pos": 1388, "end_pos": 1390 }, { "start_pos": 1585, "end_pos": 1587 }, { "start_pos": 1696, "end_pos": 1698 }, { "start_pos": 1749, "end_pos": 1751 }, { "start_pos": 181, "end_pos": 183 }, { "start_pos": 1834, "end_pos": 1836 }, { "start_pos": 1939, "end_pos": 1941 }, { "start_pos": 2079, "end_pos": 2081 }, { "start_pos": 2126, "end_pos": 2128 }, { "start_pos": 2174, "end_pos": 2176 }, { "start_pos": 2211, "end_pos": 2213 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"gene_names": [ { "name": "Mgat4d", "type": "recommended", "evidence": [ { "id": "A0A9J7FKM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ] }, { "name": "Mgat4d", "type": "synonym", "evidence": [ { "id": "XP_027261951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261951" } ] } ], "protein_names": [ { "name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FKM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2/entry#names_and_taxonomy" } ] }, { "name": "alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027261951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261951" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027261951.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261951" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mgat4d", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FKM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FKM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774333", "url": "https://www.ncbi.nlm.nih.gov/gene/100774333", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774333", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774333", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FKM2", "url": "https://www.orthodb.org/?gene=A0A9J7FKM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12062:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12062:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04666", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04666", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261951", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGRKTICGRSVGGRVLLWWDQFGCHRHNVGVGAITTETRARGVRDAGALLRQPWVRDAAATLKAKNVNLLFAFVAVLLFCFSCFCISKMNQTSNELINCRNHILGFKENMLRLKNKHENNHQNLVQVLNQVKYEITQTANTSGNLVERKVNTLSGKEILPNGFEDLKFFLPYLRTMGKIYPDVATGRGKAGVSFALGITTIDRRQHSYLKQTLTSILSRMTPEEEKDSVVIVSVADTDDYLNYVLDMVKTKFKRQVQSGSLEVISIPTFFYPSILLGKKAKEDSDSWQMKQVLDCCILMLYAQPKATYYLQLEDDIIARKMYFTKMKDFVNSLTSKNWLFIEFSVLGLIGKLFQSKDLLDFVHFFLMFYKVKPIDMLLEDIFLVKMCNLGEHFRRCMYRKKDVRVQYRPSLFQHVGIQSSFPGRQQHLKVRL", "length": 433, "header": "tr|A0A9J7FKM2-1|A0A9J7FKM2_CRIGR Isoform 1 of Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D isoform X2 OS=Cricetulus griseus OX=10029 GN=Mgat4d PE=4 SV=1 CANONICAL=A0A9J7FKM2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2/entry#A0A9J7FKM2-1", "sequence": { "sequence": "MTGRKTICGRSVGGRVLLWWDQFGCHRHNVGVGAITTETRARGVRDAGALLRQPWVRDAAATLKAKNVNLLFAFVAVLLFCFSCFCISKMNQTSNELINCRNHILGFKENMLRLKNKHENNHQNLVQVLNQVKYEITQTANTSGNLVERKVNTLSGKEILPNGFEDLKFFLPYLRTMGKIYPDVATGRGKAGVSFALGITTIDRRQHSYLKQTLTSILSRMTPEEEKDSVVIVSVADTDDYLNYVLDMVKTKFKRQVQSGSLEVISIPTFFYPSILLGKKAKEDSDSWQMKQVLDCCILMLYAQPKATYYLQLEDDIIARKMYFTKMKDFVNSLTSKNWLFIEFSVLGLIGKLFQSKDLLDFVHFFLMFYKVKPIDMLLEDIFLVKMCNLGEHFRRCMYRKKDVRVQYRPSLFQHVGIQSSFPGRQQHLKVRL", "length": 433, "header": "tr|A0A9J7FKM2-1|A0A9J7FKM2_CRIGR Isoform 1 of Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D isoform X2 OS=Cricetulus griseus OX=10029 GN=Mgat4d PE=4 SV=1 CANONICAL=A0A9J7FKM2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acetylglucosaminyltransferase activity", "id": "GO:0008375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008375", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FKM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM2" }, { "id": "PF04666", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04666" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MGAT4 conserved region", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 430, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027260250.1. 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"MFAPAINQLMTAGGPQEGYCASWGCETTGEAYWKPSSSWDFITLKWREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLYRAGKDPVTLFSLYRQITPLSQQSVGPNPVIADQRAPTQFQVPEPPTVPKAITPTPGAVIFSPTPDALNIEKTRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGMAILGNYSNQTSAPTSSGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLGKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLNQRRQLFESQQGWFEGWFAKSPWLTTLINGFSMDNSVPRYHLASKNNAAHSGYFYTVGEFRADGMEQAISDHTARAYRAEF", "length": 545, "header": "tr|A0A9J7FKP8-1|A0A9J7FKP8_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113834553 PE=4 SV=1 CANONICAL=A0A9J7FKP8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKP8/entry#A0A9J7FKP8-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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ab initio :: 28% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262573" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FL04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163108", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04", "locus": {} } ], "crossref": [ { "id": "A0A9J7FL04", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FL04", "database": "AlphaFoldDB", "categories": [] }, { "id": "103163108", "url": "https://www.ncbi.nlm.nih.gov/gene/103163108", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163108", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163108", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FL04", "url": "https://www.orthodb.org/?gene=A0A9J7FL04", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11005", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11005", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262573", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FL04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWWLLKTICLVHVIGNILCLLKPKPKNPEANMNVSEIISYWGYKWEVYEVVSGDGYILPIYRIPRGKNEIMDSSPKTVVYLQHGLTLSASAWILNPPSSSLGFLLADANFDVWLGNSRGNNYAMKHVYLDPNCKAFWDFSFNEQIKFDIPAIIDFIVNKTGQKQIYYVGHSQGTLLAYGAFATNPQLAQKIKANLALTPVVTTRYLSGAFRTIAYVHPTVIKVGRGCVVNNKPPLTSLASLRVLKPLADPNELCGLWARAGSYHFRDTCSSSLTPGTAMVHAERCA", "length": 286, "header": "tr|A0A9J7FL04-1|A0A9J7FL04_CRIGR Isoform 1 of Tear acid lipase-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163108 PE=3 SV=1 CANONICAL=A0A9J7FL04-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FL04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04/entry#A0A9J7FL04-1", "sequence": { "sequence": "MWWLLKTICLVHVIGNILCLLKPKPKNPEANMNVSEIISYWGYKWEVYEVVSGDGYILPIYRIPRGKNEIMDSSPKTVVYLQHGLTLSASAWILNPPSSSLGFLLADANFDVWLGNSRGNNYAMKHVYLDPNCKAFWDFSFNEQIKFDIPAIIDFIVNKTGQKQIYYVGHSQGTLLAYGAFATNPQLAQKIKANLALTPVVTTRYLSGAFRTIAYVHPTVIKVGRGCVVNNKPPLTSLASLRVLKPLADPNELCGLWARAGSYHFRDTCSSSLTPGTAMVHAERCA", "length": 286, "header": "tr|A0A9J7FL04-1|A0A9J7FL04_CRIGR Isoform 1 of Tear acid lipase-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163108 PE=3 SV=1 CANONICAL=A0A9J7FL04-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FL04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FL04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL04" }, { "id": "PF04083", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04083" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Partial AB-hydrolase lipase", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 95, "start_aa": "Val", "end_aa": "Asn", 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"LOC113834683", "type": "synonym", "evidence": [ { "id": "XP_027261897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261897" } ] } ], "protein_names": [ { "name": "Spidroin-2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FL17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17/entry#names_and_taxonomy" } ] }, { "name": "spidroin-2-like", "type": "synonym", "evidence": [ { "id": "XP_027261897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261897" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261897" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FL17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834683", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17", "locus": {} } ], "crossref": [ { "id": "A0A9J7FL17", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FL17", "database": "AlphaFoldDB", "categories": [] }, { "id": "113834683", "url": "https://www.ncbi.nlm.nih.gov/gene/113834683", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113834683", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834683", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027261897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FL17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVAARAGDLRAARGGRSPRRGGDSPTGRGAASRSPSRPARLSPPPAPPARPPGIALFALGAGRTAHGGRARVPAGTWGHNTQKQGRVCWALAPSTGLGSRLGRTRLGTGALAAPAYTNPGTGPAGTKPRPREALTLAEEASRQGWLRPWPAARPRPPGAPSVQDAAPFARSWRCSPGRAESAQVELGAAASPPPGPRTTTELHGPRSGPARKAGARPAGQLRAGRALHPGPRHRSGWGAVGGGARCTGTPTPTVAAFVWPRGPGAVRLVLPGPAPRSALPCPARRRLQSPRAGLAPGASTLPGVAGGCAGAAEEGAARVWRRREEEEEEEEKRKRKFGAGGRRAGRGERAGHGRGERGRRRPGAGAGRGQDEPHAKLGPGAAGGGAAGVRRRRERRSRRARGGGERKEREEKKKKRESCHLPICSSGARAAAAAAELRRGGRSGAGTVAFYPEKEALRAAEPPSRQQVGGLAGGGERRTRCTRGGGGGAGRRAREPRAREGGPSGEPEPAAAAAAEQHGLAGSLQPDPERAEGARRRSGGGGADRLARAVIGLCKAGRRGGGGCGQEERRRRRRRRRLQRSEGTRWKWELMSEKKKKSLDLYSAN", "length": 605, "header": "tr|A0A9J7FL17-1|A0A9J7FL17_CRIGR Isoform 1 of Spidroin-2-like OS=Cricetulus griseus OX=10029 GN=LOC113834683 PE=4 SV=1 CANONICAL=A0A9J7FL17-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FL17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL17/entry#A0A9J7FL17-1", "sequence": { "sequence": "MVAARAGDLRAARGGRSPRRGGDSPTGRGAASRSPSRPARLSPPPAPPARPPGIALFALGAGRTAHGGRARVPAGTWGHNTQKQGRVCWALAPSTGLGSRLGRTRLGTGALAAPAYTNPGTGPAGTKPRPREALTLAEEASRQGWLRPWPAARPRPPGAPSVQDAAPFARSWRCSPGRAESAQVELGAAASPPPGPRTTTELHGPRSGPARKAGARPAGQLRAGRALHPGPRHRSGWGAVGGGARCTGTPTPTVAAFVWPRGPGAVRLVLPGPAPRSALPCPARRRLQSPRAGLAPGASTLPGVAGGCAGAAEEGAARVWRRREEEEEEEEKRKRKFGAGGRRAGRGERAGHGRGERGRRRPGAGAGRGQDEPHAKLGPGAAGGGAAGVRRRRERRSRRARGGGERKEREEKKKKRESCHLPICSSGARAAAAAAELRRGGRSGAGTVAFYPEKEALRAAEPPSRQQVGGLAGGGERRTRCTRGGGGGAGRRAREPRAREGGPSGEPEPAAAAAAEQHGLAGSLQPDPERAEGARRRSGGGGADRLARAVIGLCKAGRRGGGGCGQEERRRRRRRRRLQRSEGTRWKWELMSEKKKKSLDLYSAN", "length": 605, "header": "tr|A0A9J7FL17-1|A0A9J7FL17_CRIGR Isoform 1 of Spidroin-2-like OS=Cricetulus griseus OX=10029 GN=LOC113834683 PE=4 SV=1 CANONICAL=A0A9J7FL17-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 253, "start_aa": "Thr", "end_pos": 253, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr253", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262718" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FL24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc186", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL24", "locus": {} } ], "crossref": [ { "id": "A0A9J7FL24", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FL24", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752682", "url": "https://www.ncbi.nlm.nih.gov/gene/100752682", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752682", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FL24", "url": "https://www.orthodb.org/?gene=A0A9J7FL24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18911:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18911:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27942", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27942", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FL24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIKGGFEEMQSELLPVSMSETEHMASISSDADTGKSPELEEDSGNPFSGDESNKLETKSELLSLNSDKILCQPNEHSNQIEQENHITDCGGGENSCAKTDTCSENSEQADDFPAGDFAKQPSKTSDPEPTTVTQILAELRSSAFTEASNAKPSSGASLYDTDCTRTLLSQIKTASASEDLLGEIETELLSAEFTEEHQVPNGVNKGEQALALFEKCVQGKYLQQELTIKKLIKENKNHQELILNICSEKDNLREELKKRTETEKQHMNTIKQLELRIEELNKEVKASRDQLVAQDATAKNAIQQIHKEMAQRMDQANKKCEEARQEKEVMVMKYVRGEKESLDLRKEKETLERKLRDANKELEKNTNKIKQLSQEKGRLQQLYESKEGETSRLIKETDRLKEEISSYVIKVKWAQNKLKAEMDSHKETKDKLKETTTKLTRAKEEADQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLELHHAKIKELEDLKRTFKEGMDELRTLRTKAKCLEDERLRTEDELSKYREIINRQKSEIQNLLDKVKMADQVQEQLQSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSESSSLQSQVDSLSCSESQLQSQCQQMTQTNANLESRLHREEELRREEVQSLQAELSATQAEVKALGTQVEELKDELVTQRRKLAANVKDLSKQLQQARRKLDQTENGNYDREVSSMGSRSSSSGSLNARSSVEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEMRKKTKIIQSYILREESGTLSSEASDFNKVHLSRRGGIMASLYTSHPADSGLTLELSLEINRKLQAVLEDTLLKNITLKENLQTLGTEIERLIKHQHELEQRMKKT", "length": 918, "header": "tr|A0A9J7FL24-1|A0A9J7FL24_CRIGR Isoform 1 of Coiled-coil domain-containing protein 186 OS=Cricetulus griseus OX=10029 GN=Ccdc186 PE=4 SV=1 CANONICAL=A0A9J7FL24-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FL24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL24/entry#A0A9J7FL24-1", "sequence": { "sequence": "MKIKGGFEEMQSELLPVSMSETEHMASISSDADTGKSPELEEDSGNPFSGDESNKLETKSELLSLNSDKILCQPNEHSNQIEQENHITDCGGGENSCAKTDTCSENSEQADDFPAGDFAKQPSKTSDPEPTTVTQILAELRSSAFTEASNAKPSSGASLYDTDCTRTLLSQIKTASASEDLLGEIETELLSAEFTEEHQVPNGVNKGEQALALFEKCVQGKYLQQELTIKKLIKENKNHQELILNICSEKDNLREELKKRTETEKQHMNTIKQLELRIEELNKEVKASRDQLVAQDATAKNAIQQIHKEMAQRMDQANKKCEEARQEKEVMVMKYVRGEKESLDLRKEKETLERKLRDANKELEKNTNKIKQLSQEKGRLQQLYESKEGETSRLIKETDRLKEEISSYVIKVKWAQNKLKAEMDSHKETKDKLKETTTKLTRAKEEADQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLELHHAKIKELEDLKRTFKEGMDELRTLRTKAKCLEDERLRTEDELSKYREIINRQKSEIQNLLDKVKMADQVQEQLQSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSESSSLQSQVDSLSCSESQLQSQCQQMTQTNANLESRLHREEELRREEVQSLQAELSATQAEVKALGTQVEELKDELVTQRRKLAANVKDLSKQLQQARRKLDQTENGNYDREVSSMGSRSSSSGSLNARSSVEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEMRKKTKIIQSYILREESGTLSSEASDFNKVHLSRRGGIMASLYTSHPADSGLTLELSLEINRKLQAVLEDTLLKNITLKENLQTLGTEIERLIKHQHELEQRMKKT", "length": 918, "header": "tr|A0A9J7FL24-1|A0A9J7FL24_CRIGR Isoform 1 of Coiled-coil domain-containing protein 186 OS=Cricetulus griseus OX=10029 GN=Ccdc186 PE=4 SV=1 CANONICAL=A0A9J7FL24-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FN96-1", "uniprot_ac": "A0A9J7FN96", "uniprot_id": "A0A9J7FN96_CRIGR", "mass": { "chemical_mass": 115851.0, "monoisotopic_mass": 115851.0 }, "refseq": { "ac": "XP_027261996", "name": "MHC class II regulatory factor RFX1 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261996" }, "gene_names": [ { "name": "Rfx1", "type": "recommended", "evidence": [ { "id": "A0A9J7FN96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96" } ] }, { "name": "Rfx1", "type": "synonym", "evidence": [ { "id": "XP_027261996", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261996" } ] } ], "protein_names": [ { "name": "MHC class II regulatory factor RFX1 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027261996", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261996" }, { "id": "A0A9J7FN96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261996" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rfx1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96", "locus": {} } ], "crossref": [ { "id": "A0A9J7FN96", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FN96", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767562", "url": "https://www.ncbi.nlm.nih.gov/gene/100767562", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057321", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057321", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767562", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767562", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FN96", "url": "https://www.orthodb.org/?gene=A0A9J7FN96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04589", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04589", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25340", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25340", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261996", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FL57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FN96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQSYVTELQAAPQASQPPQAPPQALPQPPPPTAPQPPAAATPQPQYVTELQSPQPQPQPPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSTAQGTKGGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQESSGSKFPARKAEQREPRPTPPPEPPPRLPGPGPACCGQASQLGSPEQPPPHYEPGVEQWVELVGVLPPHLLLPQQRVVFEPLPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 1076, "header": "tr|A0A9J7FN96-1|A0A9J7FN96_CRIGR Isoform 1 of MHC class II regulatory factor RFX1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rfx1 PE=4 SV=1 CANONICAL=A0A9J7FN96-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FL57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#A0A9J7FL57-1", "sequence": { "sequence": "MRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSTAQGTKGGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQESSGSKFPARKAEQREPRPTPPPEPPPRLPGPGPACCGQASQLGSPEQPPPHYEPGVEQWVELVGVLPPHLLLPQQRVVFEPLPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 974, "header": "tr|A0A9J7FL57-1|A0A9J7FN96_CRIGR Computationally mapped isoform of MHC class II regulatory factor RFX1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rfx1 PE=4 SV=1 CANONICAL=A0A9J7FN96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FN39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#A0A9J7FN39-1", "sequence": { "sequence": "MATQSYVTELQAAPQASQPPQAPPQALPQPPPPTAPQPPAAATPQPQYVTELQSPQPQPQPPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQRSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQESSGSKFPARKAEQREPRPTPPPEPPPRLPGPGPACCGQASQLGSPEQPPPHYEPGVEQWVELVGVLPPHLLLPQQRVVFEPLPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 1040, "header": "tr|A0A9J7FN39-1|A0A9J7FN39_CRIGR Computationally mapped isoform of MHC class II regulatory factor RFX1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rfx1 PE=4 SV=1 CANONICAL=A0A9J7FN96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FN96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#A0A9J7FN96-1", "sequence": { "sequence": "MATQSYVTELQAAPQASQPPQAPPQALPQPPPPTAPQPPAAATPQPQYVTELQSPQPQPQPPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSTAQGTKGGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQESSGSKFPARKAEQREPRPTPPPEPPPRLPGPGPACCGQASQLGSPEQPPPHYEPGVEQWVELVGVLPPHLLLPQQRVVFEPLPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 1076, "header": "tr|A0A9J7FN96-1|A0A9J7FN96_CRIGR Isoform 1 of MHC class II regulatory factor RFX1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rfx1 PE=4 SV=1 CANONICAL=A0A9J7FN96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#A0A9J7FPR6-1", "sequence": { "sequence": "MATQSYVTELQAAPQASQPPQAPPQALPQPPPPTAPQPPAAATPQPQYVTELQSPQPQPQPPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSTAQGTKGGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQEVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 965, "header": "tr|A0A9J7FPR6-1|A0A9J7FPR6_CRIGR Computationally mapped isoform of MHC class II regulatory factor RFX1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rfx1 PE=4 SV=1 CANONICAL=A0A9J7FN96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN96/entry#A0A9J7GWD6-1", "sequence": { "sequence": "MATQSYVTELQAAPQASQPPQAPPQALPQPPPPTAPQPPAAATPQPQYVTELQSPQPQPQPPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSETSPSSTASQTGVPTQVVQQVQGSQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSTAQGTKGGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGAPAGTVQQLQVHSVQQSVPVSQERSVVQATPQTKAGPVQQLTVQGLQPVHVTQESSGSKFPARKAEQREPRPTPPPEPPPRLPGPGPACCGQASQLGSPEQPPPHYEPGVEQWVELVGVLPPHLLLPQQRVVFEPLPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLQQVPVSHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPIYTQPAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGSGGGGSSGSSSGGGGGSGSGAGTYVIQGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQFANLTTSLNPLDPDKDEEEEEEEESEDDLPQDISLAAGSESPALGPEALEPPAKLARSDTRGLFVQALPSS", "length": 955, "header": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262534", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262534" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773095", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FLA6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FLA6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03506", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03506", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773095", "url": "https://www.ncbi.nlm.nih.gov/gene/100773095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19353:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19353:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262534", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262534", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FLA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSLLIGELAPEQPSFEPTKNKELTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGTSLVPFFLCAVLLSVVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLFFALGKVLSVELGKQKKKHMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVVQRKKWVDLAWMLSFYARVFFTYMPLLGLKGFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNVDWVSTQLQATCNVHQSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYKSKPLLSAFADIVYSLKESGQLWLDAYLHQ", "length": 360, "header": "tr|A0A9J7FLA6-1|A0A9J7FLA6_CRIGR Isoform 1 of Acyl-CoA (8-3)-desaturase isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773095 PE=4 SV=1 CANONICAL=A0A9J7FLA6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FLA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6/entry#A0A9J7FLA6-1", "sequence": { "sequence": "MNSLLIGELAPEQPSFEPTKNKELTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGTSLVPFFLCAVLLSVVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLFFALGKVLSVELGKQKKKHMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVVQRKKWVDLAWMLSFYARVFFTYMPLLGLKGFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNVDWVSTQLQATCNVHQSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYKSKPLLSAFADIVYSLKESGQLWLDAYLHQ", "length": 360, "header": "tr|A0A9J7FLA6-1|A0A9J7FLA6_CRIGR Isoform 1 of Acyl-CoA (8-3)-desaturase isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773095 PE=4 SV=1 CANONICAL=A0A9J7FLA6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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} ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water", "id": "GO:0016717", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016717", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FLA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA6" }, { "id": "PF00487", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00487" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fatty acid desaturase", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 332, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FPI3-1", "uniprot_ac": "A0A9J7FPI3", "uniprot_id": "A0A9J7FPI3_CRIGR", "mass": { "chemical_mass": 231763.0, "monoisotopic_mass": 231763.0 }, "refseq": { "ac": "XP_027262222", "name": "uncharacterized protein KIAA2026 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262222" }, "gene_names": [ { "name": "Kiaa2026", "type": "recommended", "evidence": [ { "id": "A0A9J7FPI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3" } ] }, { "name": "Kiaa2026", "type": "synonym", "evidence": [ { "id": "XP_027262222", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262222" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA2026 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FPI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA2026 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027262222", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262222" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262222" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa2026", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3", "locus": {} } ], "crossref": [ { "id": "cd04369", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04369", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763428", "url": "https://www.ncbi.nlm.nih.gov/gene/100763428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056522", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056522", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763428", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763428", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FPI3", "url": "https://www.orthodb.org/?gene=A0A9J7FPI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31095", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31095", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31095:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31095:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23450", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23450", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262222", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FLG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSDSNVPSISRLPTPSLQHPSQCEAGIVKPIPDYCSRMELYFSYEGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2134, "header": "tr|A0A9J7FPI3-1|A0A9J7FPI3_CRIGR Isoform 1 of Uncharacterized protein KIAA2026 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FLG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7FLG0-1", "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2061, "header": "tr|A0A9J7FLG0-1|A0A9J7FPI3_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA2026 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7FNF4-1", "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSDSNVPSISRLPTPSLQHPSQCEAGIVKPIPDYCSRMELYFSYEGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2067, "header": "tr|A0A9J7FNF4-1|A0A9J7FNF4_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA2026 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7FNJ6-1", "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2091, "header": "tr|A0A9J7FNJ6-1|A0A9J7FNJ6_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA2026 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7FPI3-1", "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSDSNVPSISRLPTPSLQHPSQCEAGIVKPIPDYCSRMELYFSYEGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2134, "header": "tr|A0A9J7FPI3-1|A0A9J7FPI3_CRIGR Isoform 1 of Uncharacterized protein KIAA2026 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7FQ33-1", "sequence": { "sequence": "MEGTDRRTERHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSDSNVPSISRLPTPSLQHPSQCEAGIVKPIPDYCSRMELYFSYEGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEISKSVDAAEPLDNLEKEHVDSDDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 1946, "header": "tr|A0A9J7FQ33-1|A0A9J7FQ33_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA2026 homolog isoform X7 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI3/entry#A0A9J7JK58-1", "sequence": { "sequence": "MSGPETPPGEMERAAEEERPPPTAGDGDGNEEEVAAAARASGLDRRRSASSLDDEEEEVAEATVVAGGGCKEQDLTYELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGEEDGAEGRRNGGRGSRVLPQQPGQGMCLLKMEEKFSRGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALLSRHLREKTTIAVTSRGYYGLEEEKGTACTSTRRRSTPRSLTGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQEKKEAEEACQKEVEEWERKLLAQAAPACMENMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRPTLHRRPALPYRTWEAVLRQTVQQWYTAVGQTENPDDCAEKLGLCPQFFKVLGEVNPLEEKPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQRPFQAPEFPVPPIKVKRVPRIKLEKFKCDYVSTSNGDHRCNRESLPSAFKKEQEIDFGPARCPAKMNFDNHDISVEMEVKSNCDIKLHRPCEIEKTDSCKENLEKPRSPGEVTGFGEPLSPGEIRFIENQEKYGEASTIKTEPSPLKENALKSCQIHINGSHIDHQDINCHKVVRDLLLEHSLQNHKKLKLTKMRTKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSYKPEIQNKLLIIKKKGKHKKHKSGKKSVSKKAITKKRKTVAKSPAVPEFQLICTNLDELRELITKIENELKDLENSRKKSDSNVPSISRLPTPSLQHPSQCEAGIVKPIPDYCSRMELYFSYEGKWYHRRQAVKELHSTLVRLLNELLPWEPKLMKAFQRNRSRLKKDYDDFRRQPDHGQFTRELWTTEECEGNPEREPPTAEINDMKLSEIGYPLARSKLLKKELSSKDVVKTLPKTLKRQSKQSSYLDDSTKELSPRKKAKLSTNETSVENLEVDMQIDCLNESKHTELPFLESFASKDSVPVSTLQKGTKPIQALLAKNIGNKVTLTNQLPPSTGRSVPAVEKPALSPSETSPIKPALSCLAGTKGPLQMVYKMPCGQWLPVDLHNSSVKIQMQPVVDSKTGEKIMQQVLILPKNFVIQHKEGKAVAKELAAPQQKGAEQCSLVSVPVTSGGTVSTQLPNTVFSKTITPSSNMSARSQPLSPVTSVNNVLASPVKTSQSEAGKVKNAVSSATFPQPITSPTISSTVQPLLPATTLNESTDPGTSLTCFSQQTVDSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSSSSAFTFAPQLQAFLVPKSTSSPAFSQGAGMTTTSTPPSFSQTPTCVSISCGFHPSVGKNLKPMLGQPSSSGYVGPIIEKASCMPSSPMKPSISSSSMLPSTTNSSVSVISLSTGNFGQTNTNVIQTSSKAQQVDYFTKSYQVTRSEATTAINGDVLSETPVQKLMLVPSPSVLPSSAPSVNMAPVPTSTSVSTQKVVFINAPVPSGTAASAIVAESLKQTLPPPLNKTYVKTPEQPQIVLIPSTLGAPIKINSSPTVSQIKDVKIGLNIGQAIINPPGNLPAISSVNILQSVMPKEDKSSKGYVSPMSTSGNSVLASSSIVSQNLPSVNESVVSTTRAANMFSGTGTNVPLSSLSVTSSSASSVTRPPVLVSGTDSSSRIMPVLSNRLCTSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKPLTSALQIPVTVALPTPVTTSPKIINTATHSATVPGATHPVSLSKRQSRTSLQFQSPGTSTTVPTNANTNKPQTELSSLSPSPGKIINTSNVTSIPNQLMSPSLVKTTSGNNSTAGGSAIHTGTPPLNITSVAGASFSEPCVQQKIVINTSTPLAPGTQIMMNGARFIVPPQGLGAGSHILLISTNPKYGPPLVLNNAQGLPATPVDNPVQKIIQTSNHSLSGQPLKPSVRNSTKIVNCLGSPSSLSAVYSTPQMVNTPAKVYVPPAPTVPLTSVIKSSPATLLAKTSLVSAISSNNPPLPSSTSVFHLDTSVKKLLVSPEGAILNTINTPASKVSSLSPSLPQVVVSASQNPASVFPAFQSSGSEKPDKAAS", "length": 2114, "header": "tr|A0A9J7JK58-1|A0A9J7JK58_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA2026 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa2026 PE=4 SV=1 CANONICAL=A0A9J7FPI3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2030, "start_aa": "Thr", "end_pos": 2030, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2030", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 23, "start_aa": "Thr", "end_pos": 23, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr23", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 806, "start_aa": "Thr", "end_pos": 806, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr806", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLG0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLG0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763428", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763428", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1001, "end_pos": 1003, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1018, "end_pos": 1020, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1123, "end_pos": 1125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1209, "end_pos": 1211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1273, "end_pos": 1275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1441, "end_pos": 1443, 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"UniProtKB", "id": "A0A9J7FLS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLS7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLS7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FLS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLS7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": 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"A0A9J7FLU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU4" } ] }, { "name": "LOC113834829", "type": "synonym", "evidence": [ { "id": "XP_027263207", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263207" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027263207", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263207" }, { "id": "A0A9J7FLU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263207", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263207" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLU4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834829", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FLU4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FLU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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"MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRTGKDPVTLFSLYRQITPLSQQSVGPNIVIADQRSPTHFQVPKPPTVPKAITPTPGAVTFSPTPDALNIEITRDPPGTRDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPSSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLEKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVIQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7FLU4-1|A0A9J7FLU4_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113834829 PE=4 SV=1 CANONICAL=A0A9J7FLU4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FLU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU4/entry#A0A9J7FLU4-1", "sequence": { 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"glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027263884.1. 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CANONICAL=A0A9J7FM82-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 547, "start_aa": "Thr", "end_pos": 547, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr547", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027260518" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 11% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260518" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH16orf82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86", "locus": {} } ], "crossref": [ { "id": "A0A9J7FM86", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FM86", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765025", "url": "https://www.ncbi.nlm.nih.gov/gene/100765025", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765025", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FM86", "url": "https://www.orthodb.org/?gene=A0A9J7FM86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40139", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40139", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40139:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40139:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260518", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FM86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FM86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRREEGNRPQATFRGLQGPLLDKPIPLPPAIKVEKGGSSVWNAQERRPSPSLPILEFQPHVGSSHAAIIQKPLRIVYSTLGTPHSLESLQRNTQHLNPEACSISSKASSGYEADEESSKASLVNSKQSVRLTKRLTTKIDSTHSSEQSINSHPGALKIQRLNSQGQDTQQAGGEK", "length": 175, "header": "tr|A0A9J7FM86-1|A0A9J7FM86_CRIGR Isoform 1 of Protein TNT isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH16orf82 PE=4 SV=1 CANONICAL=A0A9J7FM86-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FM86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86/entry#A0A9J7FM86-1", "sequence": { "sequence": "MRREEGNRPQATFRGLQGPLLDKPIPLPPAIKVEKGGSSVWNAQERRPSPSLPILEFQPHVGSSHAAIIQKPLRIVYSTLGTPHSLESLQRNTQHLNPEACSISSKASSGYEADEESSKASLVNSKQSVRLTKRLTTKIDSTHSSEQSINSHPGALKIQRLNSQGQDTQQAGGEK", "length": 175, "header": "tr|A0A9J7FM86-1|A0A9J7FM86_CRIGR Isoform 1 of Protein TNT isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH16orf82 PE=4 SV=1 CANONICAL=A0A9J7FM86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM86" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765025", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FMA3-1", "uniprot_ac": "A0A9J7FMA3", "uniprot_id": "A0A9J7FMA3_CRIGR", "mass": { "chemical_mass": 78905.0, "monoisotopic_mass": 78905.0 }, "refseq": { "ac": "XP_007645846", "name": "UV radiation resistance-associated gene protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645846" }, "gene_names": [ { "name": "Uvrag", "type": "recommended", "evidence": [ { "id": "A0A9J7FMA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3" } ] }, { "name": "Uvrag", "type": "synonym", "evidence": [ { "id": "XP_007645846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645846" } ] } ], "protein_names": [ { "name": "UV radiation resistance-associated gene protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645846" }, { "id": "A0A9J7FMA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614327.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645846" } ] }, { "annotation": "Involved in maintaining chromosomal stability. Promotes DNA double-strand break (DSB) repair by association with DNA-dependent protein kinase complex DNA-PK and activating it in non-homologous end joining (NHEJ). Required for centrosome stability and proper chromosome segregation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LIV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LIV8#function" }, { "database": "UniProtKB", "id": "ARBA00055895", "url": "https://www.uniprot.org/uniprotkb/ARBA00055895#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Uvrag", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FMA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FMA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751375", "url": "https://www.ncbi.nlm.nih.gov/gene/100751375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751375", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FMA3", "url": "https://www.orthodb.org/?gene=A0A9J7FMA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15157:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15157:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LIV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LIV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LIV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LIV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGWNTGDLKERTRGLPGSVSGRQAWCTRLGDQACGPVSLLLLINNRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCDNEKIYKEFYRSEVIKNSLNPTWRSLDFGIMPDRLDTSVSCFVVKIWGGKEDAYHLLIEWKVYLDGLKYLGQQIHARNQNEIIFGLNDGYYGAPFEHKGHSNTQKNILQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTVQRIGKEIEEKLRLTSTSNELKKESECLRLKILVLRNELERQKKALGREVAFLHKQQMALQDKGSAFSTEHGKLQHQKESLSELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFMEHGLMVRCDRHHTSSAIPVPKRQSSMFGGADVGFSGGIPSPDKGHRKRASSENERLQYKTPPPSYNSALTQPGVAMPTMGDSERKVTPLSSSLDTSLDFSKENKKIGVDLGNSVSAAHGNSDSSQQGEALPGHLAAVNGTALPSEQAGSASALLPGQCHPAPSAELCCAVEQAEEIIGLEATGFTSGDQLEALSCIPVDSAVAVECDEQVLGEFEEFSRRIYALSENVSSFRRPRRSSDK", "length": 704, "header": "tr|A0A9J7FMA3-1|A0A9J7FMA3_CRIGR Isoform 1 of UV radiation resistance-associated gene protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Uvrag PE=4 SV=1 CANONICAL=A0A9J7FMA3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LIV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3/entry#A0A8C2LIV8-1", "sequence": { "sequence": "MSSCASLGGPVPLPPPGPSAALPPGAPARALHVELPSQQRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCDNEKIYKEFYRSEVIKNSLNPTWRSLDFGIMPDRLDTSVSCFVVKIWGGKEDAYHLLIEWKVYLDGLKYLGQQIHARNQNEIIFGLNDGYYGAPFEHKGHSNTQKNILQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTVQRIGKEIEEKLRLTSTSNELKKESECLRLKILVLRNELERQKKALGREVAFLHKQQMALQDKGSAFSTEHGKLQHQKESLSELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFMEHGLMVRCDRHHTSSAIPVPKRQSSMFGGADVGFSGGIPSPDKGHRKRASSENERLQYKTPPPSYNSALTQPGVAMPTMGDSERKVTPLSSSLDTSLDFSKENKKIGVDLGNSVSAAHGNSDSSQQGEALPGHLAAVNGTALPSEQAGSASALLPGQCHPAPSAELCCAVEQAEEIIGLEATGFTSGDQLEALSCIPVDSAVAVECDEQVLGEFEEFSRRIYALSENVSSFRRPRRSSDK", "length": 697, "header": "tr|A0A8C2LIV8-1|A0A8C2LIV8_CRIGR Computationally mapped isoform of UV radiation resistance-associated gene protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Uvrag PE=4 SV=1 CANONICAL=A0A9J7FMA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3/entry#A0A9J7FMA3-1", "sequence": { "sequence": "MIGWNTGDLKERTRGLPGSVSGRQAWCTRLGDQACGPVSLLLLINNRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCDNEKIYKEFYRSEVIKNSLNPTWRSLDFGIMPDRLDTSVSCFVVKIWGGKEDAYHLLIEWKVYLDGLKYLGQQIHARNQNEIIFGLNDGYYGAPFEHKGHSNTQKNILQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTVQRIGKEIEEKLRLTSTSNELKKESECLRLKILVLRNELERQKKALGREVAFLHKQQMALQDKGSAFSTEHGKLQHQKESLSELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFMEHGLMVRCDRHHTSSAIPVPKRQSSMFGGADVGFSGGIPSPDKGHRKRASSENERLQYKTPPPSYNSALTQPGVAMPTMGDSERKVTPLSSSLDTSLDFSKENKKIGVDLGNSVSAAHGNSDSSQQGEALPGHLAAVNGTALPSEQAGSASALLPGQCHPAPSAELCCAVEQAEEIIGLEATGFTSGDQLEALSCIPVDSAVAVECDEQVLGEFEEFSRRIYALSENVSSFRRPRRSSDK", "length": 704, "header": "tr|A0A9J7FMA3-1|A0A9J7FMA3_CRIGR Isoform 1 of UV radiation resistance-associated gene protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Uvrag PE=4 SV=1 CANONICAL=A0A9J7FMA3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751375", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 13, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA3" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA3", 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"MEETTGYRLTLCLQKLSDAEFLKFKELLRNAPEKHKLKPIPWTTIKRTSRKDMEMLLNTHYPERVWGISLRLFLDINREDLWIMTQELKRDKQRPYKETMKTIFKYIWTQENYIHFQNEEYQVIIKKQYSALQETFDHQLKPVTAVVLGNIGEGKSTFLRKAMLDWASGNLWQNRFQYVFFFSLISLNNITELSLAQLLLSKLSESSEALDDILSNPKRILFILEGFDYLNFDLELRTNLCSDWRKHLPTQIVLGSLLQKVMLPESSLLLELGPQSEPKIYPLLQYPKNIIIGGFNSAMQLYCMLFFNIDKGLEVFKYIQTSKPLFSLCSNPYACWMVCSTLKQQCDRGDRIILPLGTDTILYTMFMLSSFRSVYANCSSKENRARLKTLCTLAVEGMWKRVFVFNSEDLRRNRICESEQTVWLQVNFLNTRGDCFVFYNPALQWYFAALFYFLREDKDKPHPIIGSLPQLLKEIYACGETQWSMTGIFVFGIATEIVAAMLKPHFGFIPSKEVRQEILKCFRSLSQGDCSGKLSPQRLFDGLLDSQEEPFETQVLDLFEEMTIDISSTDELSLAKIYLLKSQKLKKLHLHIQHRIFSEIYNPEEGDLEEFTQEKTKIKKEWSELCRIFQNLQVLDLDSCNFSETAIQDLCSSMSPPLMMPLNAFKLQRMSCSFMTNFGNGALFPTLLRLPHLKSLNLYGTNLSSDVVENMCSVLKCPTCRVEELLLGNCDISSEACGVIATSLTKCKVKHLSLVENPLKNEGVMLLCQILKHPSCVLKTLMLSYCCLTFIACGHLYEALLCNRSLSLLDLGSNFLEDTGVNILCEALKDPTCCLQELWLSGCYLTTACCEGISAVLLRNKNLKTLKLGNNSIQDTGVQQLCEALRNPECKLQCLGLDMCEFTTGSCADLALALTKCKTLTSLNLDWMTFDPDGLELLCEALNHKACNLKVLGLDKSASSKESQMLLEGVEKKNLIILHYPWINEERKKRGVCLVWNSKN", "length": 1000, "header": "tr|A0A9J7FMA9-1|A0A9J7FMA9_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 9 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nlrp9 PE=3 SV=1 CANONICAL=A0A9J7FMA9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9/entry#A0A9J7FMA9-1", "sequence": { "sequence": "MEETTGYRLTLCLQKLSDAEFLKFKELLRNAPEKHKLKPIPWTTIKRTSRKDMEMLLNTHYPERVWGISLRLFLDINREDLWIMTQELKRDKQRPYKETMKTIFKYIWTQENYIHFQNEEYQVIIKKQYSALQETFDHQLKPVTAVVLGNIGEGKSTFLRKAMLDWASGNLWQNRFQYVFFFSLISLNNITELSLAQLLLSKLSESSEALDDILSNPKRILFILEGFDYLNFDLELRTNLCSDWRKHLPTQIVLGSLLQKVMLPESSLLLELGPQSEPKIYPLLQYPKNIIIGGFNSAMQLYCMLFFNIDKGLEVFKYIQTSKPLFSLCSNPYACWMVCSTLKQQCDRGDRIILPLGTDTILYTMFMLSSFRSVYANCSSKENRARLKTLCTLAVEGMWKRVFVFNSEDLRRNRICESEQTVWLQVNFLNTRGDCFVFYNPALQWYFAALFYFLREDKDKPHPIIGSLPQLLKEIYACGETQWSMTGIFVFGIATEIVAAMLKPHFGFIPSKEVRQEILKCFRSLSQGDCSGKLSPQRLFDGLLDSQEEPFETQVLDLFEEMTIDISSTDELSLAKIYLLKSQKLKKLHLHIQHRIFSEIYNPEEGDLEEFTQEKTKIKKEWSELCRIFQNLQVLDLDSCNFSETAIQDLCSSMSPPLMMPLNAFKLQRMSCSFMTNFGNGALFPTLLRLPHLKSLNLYGTNLSSDVVENMCSVLKCPTCRVEELLLGNCDISSEACGVIATSLTKCKVKHLSLVENPLKNEGVMLLCQILKHPSCVLKTLMLSYCCLTFIACGHLYEALLCNRSLSLLDLGSNFLEDTGVNILCEALKDPTCCLQELWLSGCYLTTACCEGISAVLLRNKNLKTLKLGNNSIQDTGVQQLCEALRNPECKLQCLGLDMCEFTTGSCADLALALTKCKTLTSLNLDWMTFDPDGLELLCEALNHKACNLKVLGLDKSASSKESQMLLEGVEKKNLIILHYPWINEERKKRGVCLVWNSKN", "length": 1000, "header": "tr|A0A9J7FMA9-1|A0A9J7FMA9_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 9 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nlrp9 PE=3 SV=1 CANONICAL=A0A9J7FMA9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GUE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9/entry#A0A9J7GUE8-1", "sequence": { "sequence": "MEETTGYRLTLCLQKLSDAEFLKFKELLRNAPEKHKLKPIPWTTIKRTSRKDMEMLLNTHYPERVWGISLRLFLDINREDLWIMTQELKRDKQRPYKETMKTIFKYIWTQENYIHFQNEEYQVIIKKQYSALQETFDHQLKPVTAVVLGNIGEGKSTFLRKAMLDWASGNLWQNRFQYVFFFSLISLNNITELSLAQLLLSKLSESSEALDDILSNPKRILFILEGFDYLNFDLELRTNLCSDWRKHLPTQIVLGSLLQKVMLPESSLLLELGPQSEPKIYPLLQYPKNIIIGGFNSAMQLYCMLFFNIDKGLEVFKYIQTSKPLFSLCSNPYACWMVCSTLKQQCDRGDRIILPLGTDTILYTMFMLSSFRSVYANCSSKENRARLKTLCTLAVEGMWKRVFVFNSEDLRRNRICESEQTVWLQVNFLNTRGDCFVFYNPALQWYFAALFYFLREDKDKPHPIIGSLPQLLKEIYACGETQWSMTGIFVFGIATEIVAAMLKPHFGFIPSKEVRQEILKCFRSLSQGDCSGKLSPQRLFDGLLDSQEEPFETQVLDLFEEMTIDISSTDELSLAKIYLLKSQKLKKLHLHIQHRIFSEIYNPEEGDLEEFTQEKTCSFMTNFGNGALFPTLLRLPHLKSLNLYGTNLSSDVVENMCSVLKCPTCRVEELLLGNCDISSEACGVIATSLTKCKVKHLSLVENPLKNEGVMLLCQILKHPSCVLKTLMLSYCCLTFIACGHLYEALLCNRSLSLLDLGSNFLEDTGVNILCEALKDPTCCLQELWLSGCYLTTACCEGISAVLLRNKNLKTLKLGNNSIQDTGVQQLCEALRNPECKLQCLGLDMCEFTTGSCADLALALTKCKTLTSLNLDWMTFDPDGLELLCEALNHKACNLKVLGLDKSASSKESQMLLEGVEKKNLIILHYPWINEERKKRGVCLVWNSKN", "length": 945, "header": "tr|A0A9J7GUE8-1|A0A9J7GUE8_CRIGR Computationally mapped isoform of NACHT, LRR and PYD domains-containing protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nlrp9 PE=4 SV=1 CANONICAL=A0A9J7FMA9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758096", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758096", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "canonical inflammasome complex", "id": "GO:0061702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061702", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, "end_pos": 643, "annotation": "n_glycosylation_sequon" }, { "start_pos": 702, "end_pos": 704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FMA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMA9" }, { "id": "PS50837", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NACHT", "eco_id": "ECO_0000259", "start_pos": 143, "end_pos": 274, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 641, "end_pos": 643 }, { "start_pos": 702, "end_pos": 704 }, { "start_pos": 803, "end_pos": 805 }, { "start_pos": 870, "end_pos": 872 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FMD2-1", "uniprot_ac": "A0A9J7FMD2", "uniprot_id": "A0A9J7FMD2_CRIGR", "mass": { "chemical_mass": 58276.0, "monoisotopic_mass": 58276.0 }, "refseq": { "ac": "XP_027261296", "name": "F-box/WD repeat-containing protein 11 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261296" }, "gene_names": [ { "name": "LOC100753568", "type": "recommended", "evidence": [ { "id": "A0A9J7FMD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" } ] }, { "name": "LOC100753568", "type": "synonym", "evidence": [ { "id": "XP_027261296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261296" } ] } ], "protein_names": [ { "name": "F-box/WD repeat-containing protein 11 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027261296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261296" }, { "id": "A0A9J7FMD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261296" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753568", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FMD2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FMD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753568", "url": "https://www.ncbi.nlm.nih.gov/gene/100753568", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056829", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056829", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753568", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753568", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FMD2", "url": "https://www.orthodb.org/?gene=A0A9J7FMD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14604", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14604", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14604:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14604:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12125", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12125", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261296", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERDSVIEDKTMELMISNGTSSVIVSRKRPSEGNYQKEKDLCIQYFDRWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITVLPEQGLDHIAENILSYLEARSLCAAELVCKDWQRVISEGKLWKKLIERKVRADPLWKALCERRGWVQYLFKNRPTDGPPNSYSFYRSLYPKITQDIETLESNWRCGRHNLQKIQYGFENRGVCCLQYDDDKIICGLRDSCIKIWDKTSLKCLKVLTGHTGSVLCLQYEEPVIVTGSSDSTVKVWDVNTGTVLNTLIHHKEAVLHLRFSNGLMVTCSKDCSIAVWNMASATDITLHSVLIGHLAAVNVVDFDNKYIVSASGDRTIKVWSTSTCEFIRTLNGHKQALTCLQYRDRLVISGSSDNTIRLWDIECGTCLRVLEGHEELVRCIHFDNKRIVSGAYDGKIKVWDLQAALDPQAAANTLCLFTLVKHSRCMFCLQFDKFQIISGSHDDTICIWDFLNVPPSAQNETLSPSRTYTCISR", "length": 509, "header": "tr|A0A9J7FMD2-1|A0A9J7FMD2_CRIGR Isoform 1 of F-box/WD repeat-containing protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100753568 PE=4 SV=1 CANONICAL=A0A9J7FMD2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2/entry#A0A9J7FMD2-1", "sequence": { "sequence": "MERDSVIEDKTMELMISNGTSSVIVSRKRPSEGNYQKEKDLCIQYFDRWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITVLPEQGLDHIAENILSYLEARSLCAAELVCKDWQRVISEGKLWKKLIERKVRADPLWKALCERRGWVQYLFKNRPTDGPPNSYSFYRSLYPKITQDIETLESNWRCGRHNLQKIQYGFENRGVCCLQYDDDKIICGLRDSCIKIWDKTSLKCLKVLTGHTGSVLCLQYEEPVIVTGSSDSTVKVWDVNTGTVLNTLIHHKEAVLHLRFSNGLMVTCSKDCSIAVWNMASATDITLHSVLIGHLAAVNVVDFDNKYIVSASGDRTIKVWSTSTCEFIRTLNGHKQALTCLQYRDRLVISGSSDNTIRLWDIECGTCLRVLEGHEELVRCIHFDNKRIVSGAYDGKIKVWDLQAALDPQAAANTLCLFTLVKHSRCMFCLQFDKFQIISGSHDDTICIWDFLNVPPSAQNETLSPSRTYTCISR", "length": 509, "header": "tr|A0A9J7FMD2-1|A0A9J7FMD2_CRIGR Isoform 1 of F-box/WD repeat-containing protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100753568 PE=4 SV=1 CANONICAL=A0A9J7FMD2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753568", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753568", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 495, "end_pos": 497, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FMD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD2" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 95, "end_pos": 133, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 495, "end_pos": 497 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FMY7-1", "uniprot_ac": "A0A9J7FMY7", "uniprot_id": "A0A9J7FMY7_CRIGR", "mass": { "chemical_mass": 79102.0, "monoisotopic_mass": 79102.0 }, "refseq": { "ac": "XP_027264008", "name": "WD repeat-containing protein 93 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264008" }, "gene_names": [ { "name": "Wdr93", "type": "recommended", "evidence": [ { "id": "A0A9J7FMY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7" } ] }, { "name": "Wdr93", "type": "synonym", "evidence": [ { "id": "XP_027264008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264008" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 93 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027264008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264008" }, { "id": "A0A9J7FMY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264008" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7", "locus": {} } ], "crossref": [ { "id": "100761600", "url": "https://www.ncbi.nlm.nih.gov/gene/100761600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761600", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FMY7", "url": "https://www.orthodb.org/?gene=A0A9J7FMY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12219:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12219:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264008", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K710", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K710", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K710-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K710-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSTATFHFFTNSISPIPVDAKSPPGAACILGIRWTGSHNFSLYSLNKNLKDKTDCENVWPCAAPITVSQISSSSSYLVLACEDGVLILWDLAQGFLFGVIALPEGCFCQSIHFLRFFLVHEGRNVYPEVQVKYEMMCVVLCTDASLHLVTASRTTGPTSKVLVERSKKYPEETICTVASVPALPGMVLIFSRNQSVSLMDVAKSEIICAFAAPVQPVEAMPWKPLFVVSPHHPYFLLHGVHPNDNATPTVDAKVTTDSVFCFNFDDYPLLKDISKNCTISQKDLECNQAFPQVLPLEKRCEQFLQKSFQKVARTQMKGRDQWAQLRKYSLVLQKENLKK", "length": 697, "header": "tr|A0A9J7FMY7-1|A0A9J7FMY7_CRIGR Isoform 1 of WD repeat-containing protein 93 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7FMD7-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSTATFHFFTNSISPIPVDAKSPPGAACILGIRWTGSHNFSLYSLNKNLKDKTGFLFGVIALPEGCFCQSIHFLRFFLVHEGRNVYPEVQVKYEMMCVVLCTDASLHLVTASRTTGPTSKVLVERSKKYPEETICTVASVPALPGMVLIFSRNQSVSLMDVAKSEIICAFAAPVQPVEAMPWKPLFVVSPHHPYFLLHGVHPNDNATPTVDAKVTTDSVFCFNFDDYPLLKDISKNCTISQKDLECNQAFPQVLPLEKRCEQFLQKSFQKVARTQMKGRDQWAQLRKYSLVLQKENLKK", "length": 657, "header": "tr|A0A9J7FMD7-1|A0A9J7FMY7_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7FMY7-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSTATFHFFTNSISPIPVDAKSPPGAACILGIRWTGSHNFSLYSLNKNLKDKTDCENVWPCAAPITVSQISSSSSYLVLACEDGVLILWDLAQGFLFGVIALPEGCFCQSIHFLRFFLVHEGRNVYPEVQVKYEMMCVVLCTDASLHLVTASRTTGPTSKVLVERSKKYPEETICTVASVPALPGMVLIFSRNQSVSLMDVAKSEIICAFAAPVQPVEAMPWKPLFVVSPHHPYFLLHGVHPNDNATPTVDAKVTTDSVFCFNFDDYPLLKDISKNCTISQKDLECNQAFPQVLPLEKRCEQFLQKSFQKVARTQMKGRDQWAQLRKYSLVLQKENLKK", "length": 697, "header": "tr|A0A9J7FMY7-1|A0A9J7FMY7_CRIGR Isoform 1 of WD repeat-containing protein 93 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7FQV2-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLEEMGPGEKEHL", "length": 260, "header": "tr|A0A9J7FQV2-1|A0A9J7FQV2_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X10 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7FS08-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSTATFHFFTNSISPIPVDAKSPPGAACILGIRWTGSHNFSLYSLNKNLKDKTDCENVWPCAAPITVSQISSSSSYLVLACEDGVLILWDLAQGFLFGVIALPEGCFCQSIHFLRFFLVHEGRNVYPEVQVKYEMMCVVLCTDASLHLVTASRTTGPTSKVLVERSKKYPEETICTVASVPALPGMVLIFSRNQSVSLMDVAKSEIICAFAAPVQPVEAMPWKPLFVVSPHHPYFLLHGVHPNDNATPTVDAKVTTDSVFCFNFDDYPLLKDISKNCTISQKDLECNQAFPQVLPLEKRCEQFLQKSFQKVARTQMKGRDQWAQLRKYSLVLQKENLKK", "length": 611, "header": "tr|A0A9J7FS08-1|A0A9J7FS08_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X6 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7GXS3-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSTATFHFFTNSISPIPVDAKSPPGAACILGIRWTGSHNFSLYSLNKNLKDKTGTLAAKTEAVPWLRALRTCASPAELSECGGTRAVQAEMGSQWVSKVCPWLVPCQSPVPRAPQSVV", "length": 476, "header": "tr|A0A9J7GXS3-1|A0A9J7GXS3_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X7 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7JLC8-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETNLRPSLSPYAIQDLNICFKTDLKLSPPVYVMKIKPPKPIAGTTFKSPLEIFSKVEDYCGLGSGQNHYIKDVQWEQHMEIFNASYKKYLEGEWEEEPLSHVPLLY", "length": 366, "header": "tr|A0A9J7JLC8-1|A0A9J7JLC8_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X8 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K710-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7/entry#A0A9J7K710-1", "sequence": { "sequence": "MSSSKGSRKQRPSVFAKGPLEIPSPTEADLPKDDEKDFDFWDMYQELDTLPLPYRMINKLVNLLFDYSWEVIEEREALREIEKNRILPTTYPPGAEIQLNKMPGGMAVSQDYLFIGGVKGFSIYNLHNFKRMYVWEKLKVDVISIWAMDLGNEVLIIPVDELGIVRLFYLYKDSLFLLKAINEMDDISKQSTCVKMELSPSGDYAAFLLQGAGDIWLEVYKLPKETWLKEVEHPQFTLNPKKKTKQLQLSTPDSALTESVETGTLCNLDLPLPL", "length": 274, "header": "tr|A0A9J7K710-1|A0A9J7K710_CRIGR Computationally mapped isoform of WD repeat-containing protein 93 isoform X9 OS=Cricetulus griseus OX=10029 GN=Wdr93 PE=4 SV=1 CANONICAL=A0A9J7FMY7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMD7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "electron transport chain", "id": "GO:0022900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022900", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 343, "end_pos": 345 }, { "start_pos": 397, "end_pos": 399 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 603, "end_pos": 605 }, { "start_pos": 634, "end_pos": 636 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FMG0-1", "uniprot_ac": "A0A9J7FMG0", "uniprot_id": "A0A9J7FMG0_CRIGR", "mass": { "chemical_mass": 72043.0, "monoisotopic_mass": 72043.0 }, "refseq": { "ac": "XP_027264045", "name": "protein regulator of cytokinesis 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264045" }, "gene_names": [ { "name": "Prc1", "type": "recommended", "evidence": [ { "id": "A0A9J7FMG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ] }, { "name": "Prc1", "type": "synonym", "evidence": [ { "id": "XP_027264045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264045" } ] } ], "protein_names": [ { "name": "Protein regulator of cytokinesis 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FMG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#names_and_taxonomy" } ] }, { "name": "protein regulator of cytokinesis 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027264045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264045" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264045" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FMG0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FMG0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770968", "url": "https://www.ncbi.nlm.nih.gov/gene/100770968", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770968", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770968", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FMG0", "url": "https://www.orthodb.org/?gene=A0A9J7FMG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19321", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19321", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19321:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19321:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264045", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6X0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSKDPSLSDSSTVGLQRELSKASRADATSRILNSTNIQS", "length": 620, "header": "tr|A0A9J7FMG0-1|A0A9J7FMG0_CRIGR Isoform 1 of Protein regulator of cytokinesis 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7FMG0-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSKDPSLSDSSTVGLQRELSKASRADATSRILNSTNIQS", "length": 620, "header": "tr|A0A9J7FMG0-1|A0A9J7FMG0_CRIGR Isoform 1 of Protein regulator of cytokinesis 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7FNX1-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSEGPVPL", "length": 563, "header": "tr|A0A9J7FNX1-1|A0A9J7FNX1_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7FQV9-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSARTFKGFQS", "length": 566, "header": "tr|A0A9J7FQV9-1|A0A9J7FQV9_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7FQX3-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSKDPSLSDSSTVGLQRELSKASRADATSRILNSTNIQS", "length": 583, "header": "tr|A0A9J7FQX3-1|A0A9J7FQX3_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7FS24-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSDPSLSDSSTVGLQRELSKASRADATSRILNSTNIQS", "length": 619, "header": "tr|A0A9J7FS24-1|A0A9J7FS24_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7GV28-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSKDPSLSDSSTVGLQRELSKASRADATSRILNSTNIQS", "length": 571, "header": "tr|A0A9J7GV28-1|A0A9J7GV28_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7JLD8-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKMNTTTMSSATPNSSIRPAFGGTMYRSPVSRLPPSGSKSVITSMCSGKKTPRAARLRANKENMELNGSMLSGGYSGSTPLQHNCSIKSIASTYSEFSRELSKASRADATSRILNSTNIQS", "length": 606, "header": "tr|A0A9J7JLD8-1|A0A9J7JLD8_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7JWJ3-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKSVITSMCSGKKTPRAARLRANKENMELNGSMLSARTFKGFQS", "length": 529, "header": "tr|A0A9J7JWJ3-1|A0A9J7JWJ3_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0/entry#A0A9J7K6X0-1", "sequence": { "sequence": "MRRSEVLAEESIVCLQKALIHLREIWELIGIPEEQRLQRTEVVKKHIKDLLDRMIAEEESLRERLLKSISFCQKELSTLCNELQVKPFQEEKETTVLQLEKDLRTQVELLRKQKKERKQELNLLQEQDQELCEILCMPTYDVDSTSVPTLEELNLFRQHVATLRETKESRHEQFVSIKKQIILCMEELEHTPDTSFEKDIVCEDESAFCLSLENIATLQKLLQQLEIKKSKNEAECEGLRAQIRELWDRLQIPEEEREPVAAIMTGSKAKVRNALQLEVDRLEELKMQNIKQVIETIRVELAQFWDQCFYSKEQRQAFAPYYSEDYTENLLHLHDAEIIRLRNYYEVHKELFEGVQKWEESWKLFLEFERKASDPSRFTNRGGNLLKEEKERAKLQKTLPKLEEELKARIEKWEQEQSMAFMVNGQKFMEYVTEQWELHRLEKEKAKQERQLKNKRQTEAEMLYGSAPRTPSKRPGLTPNKPGKVRKSVITSMCSGKKTPRAARLRANKENMELNGSMLSEGPVPL", "length": 526, "header": "tr|A0A9J7K6X0-1|A0A9J7K6X0_CRIGR Computationally mapped isoform of Protein regulator of cytokinesis 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Prc1 PE=4 SV=1 CANONICAL=A0A9J7FMG0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770968", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770968", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "pmid": "" }, { "name": "mitotic spindle midzone", "id": "GO:1990023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitotic spindle midzone assembly", "id": "GO:0051256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051256", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 499, "end_pos": 501, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 489, "end_pos": 491 }, { "start_pos": 499, "end_pos": 501 }, { "start_pos": 552, "end_pos": 554 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 614, "end_pos": 616 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48287:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48287:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016823002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRSGKLHSGVSAKLKRWKKGHSSDSNPATCRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGTLSLGKSQTPETAMDQDLEVPFSEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKSFMNIMSAQASSGSTSALRWVLSCLATLLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPTHHPAAVSTAKFCIQEIEKSGGSKEATTTLHMLTLLKDVLPCCPEGLVKSCSETLLRVMTLNHVLVTACAMQAFHSLFHAKPSTSTLSAGLNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRMQRDLGLGHLARFFGTVVTCLLSPHSQVVAAATQTLKEMLKECVAPHIADIGSVTSSASGPPQYIAKMFRAVEEGLTYKFHASWSSVLQLLAVFFEACGKQGHPVMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATTLKSKAMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKNFLPILFNLYGQPVAAGEAAVPRRAVLETIKIYLTITESQLVNGFLEKATEKVLDPASSDFTRLSVLDLVVALAPHADEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPADRFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLIHIVKKLSAEHEDFIAALIPEVILCTKEVSVGARKNAFNLLVEMGHAFLRFGSSQEEALQRYLVLIYPGLLGAVTTVSCSILALTHLLFEFKGLMGTSTMEQLLENVCLLLASRTRDVVKSALGFIKVAVVVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFIRKFGFELVKDLLPAEYHKVLVNIRKAETRAKKHRALSQDATEEEEEEEEEEEPIQSKGDSIEEILADSEDEDEEEERGRSKEQRKLTRQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPRQGKKKDHGFKVSADGRLIIREEEDGDKVEEDGTKGEDEEMIDPLEDAGVRSKKKLKRQREAEEDELEIPPQYQAGGSGIHRPVGKKATPGAEYKAKKAKGDVKKKGRLDPYAYIPLNRTKLNRRKKVKLQGQFKGLVKAAQRGSQRGHKLRRKDPRP", "length": 1293, "header": "tr|A0A9J7FMP5-1|A0A9J7FMP5_CRIGR Isoform 1 of RRP12-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Rrp12 PE=3 SV=1 CANONICAL=A0A9J7FMP5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5/entry#A0A9J7FMP5-1", "sequence": { "sequence": "MGRSGKLHSGVSAKLKRWKKGHSSDSNPATCRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGTLSLGKSQTPETAMDQDLEVPFSEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKSFMNIMSAQASSGSTSALRWVLSCLATLLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPTHHPAAVSTAKFCIQEIEKSGGSKEATTTLHMLTLLKDVLPCCPEGLVKSCSETLLRVMTLNHVLVTACAMQAFHSLFHAKPSTSTLSAGLNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRMQRDLGLGHLARFFGTVVTCLLSPHSQVVAAATQTLKEMLKECVAPHIADIGSVTSSASGPPQYIAKMFRAVEEGLTYKFHASWSSVLQLLAVFFEACGKQGHPVMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATTLKSKAMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKNFLPILFNLYGQPVAAGEAAVPRRAVLETIKIYLTITESQLVNGFLEKATEKVLDPASSDFTRLSVLDLVVALAPHADEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPADRFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLIHIVKKLSAEHEDFIAALIPEVILCTKEVSVGARKNAFNLLVEMGHAFLRFGSSQEEALQRYLVLIYPGLLGAVTTVSCSILALTHLLFEFKGLMGTSTMEQLLENVCLLLASRTRDVVKSALGFIKVAVVVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFIRKFGFELVKDLLPAEYHKVLVNIRKAETRAKKHRALSQDATEEEEEEEEEEEPIQSKGDSIEEILADSEDEDEEEERGRSKEQRKLTRQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPRQGKKKDHGFKVSADGRLIIREEEDGDKVEEDGTKGEDEEMIDPLEDAGVRSKKKLKRQREAEEDELEIPPQYQAGGSGIHRPVGKKATPGAEYKAKKAKGDVKKKGRLDPYAYIPLNRTKLNRRKKVKLQGQFKGLVKAAQRGSQRGHKLRRKDPRP", "length": 1293, "header": "tr|A0A9J7FMP5-1|A0A9J7FMP5_CRIGR Isoform 1 of RRP12-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Rrp12 PE=3 SV=1 CANONICAL=A0A9J7FMP5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757192", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757192", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1253, "end_pos": 1255, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5" }, { "id": "PF08161", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08161" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRP12 HEAT", "eco_id": "ECO_0000259", "start_pos": 427, "end_pos": 700, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMP5" }, { "id": "PF25772", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25772" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRP12 N-terminal HEAT", "eco_id": "ECO_0000259", "start_pos": 110, "end_pos": 357, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 1253, "end_pos": 1255 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FMV4-1", "uniprot_ac": "A0A9J7FMV4", "uniprot_id": "A0A9J7FMV4_CRIGR", "mass": { "chemical_mass": 97767.0, "monoisotopic_mass": 97767.0 }, "refseq": { "ac": "XP_027263736", "name": "vomeronasal type-2 receptor 116-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263736" }, "gene_names": [ { "name": "LOC100766163", "type": "recommended", "evidence": [ { "id": "A0A9J7FMV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4" } ] }, { "name": "LOC100766163", "type": "synonym", "evidence": [ { "id": "XP_027263736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263736" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FMV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "XP_027263736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263736" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263736", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263736" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766163", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FMV4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FMV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766163", "url": "https://www.ncbi.nlm.nih.gov/gene/100766163", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766163", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766163", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FMV4", "url": "https://www.orthodb.org/?gene=A0A9J7FMV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF409", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF409", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263736", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263736", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMV4-1", "database": "UniProtKB", 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260997" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bend7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMY9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FMY9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FMY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754282", "url": "https://www.ncbi.nlm.nih.gov/gene/100754282", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018379", 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"MGSSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSSGGGSSGGERRKRSRERGGERGSGRRGAEAEARGGAHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSIEETNKLRAKLGLKPLEVNAVKKEAGTKEEPVAADVINPMALRQREELREKLAAAKEKRLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQRRQDLYSARDLQGLTVEHAIDSFREGETVVLTLKDKGVLQEGEDVLVNVNMVDKERADKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHSFRLEQGGMADGLRERELEEIRAKLRLQAQSLSSVGPRLASEYLSPEEMVTFKKTKRRVKKIRKKEKEVVMRADDLLPLGDQTQDGDFGSRLRGRGRRRVPEVEEEALEDEEKDPVAQPPPSDDTRVENMDISDEEDGGALPSGSPEVLEEDEAELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEEEDPERKGAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWSTVNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSLPSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSGSGKSMNANTITK", "length": 806, "header": "tr|A0A9J7FN07-1|A0A9J7FN07_CRIGR Isoform 1 of U4/U6.U5 tri-snRNP-associated protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sart1 PE=3 SV=1 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN07" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769602", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "maturation of 5S rRNA", "id": "GO:0000481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000481", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN07" } ], "pmid": "" }, { "name": "mRNA cis splicing, via spliceosome", "id": "GO:0045292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045292", "evidence": [ { "database": "UniProtKB", 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501127", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501127" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pmfbp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN65", "locus": {} } ], "crossref": [ { "id": "A0A9J7FN65", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FN65", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760575", "url": "https://www.ncbi.nlm.nih.gov/gene/100760575", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037391", 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"pmid": "" }, { "name": "U2 snRNA binding", "id": "GO:0030620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030620", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN93" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN93" } ], "pmid": "" }, { "name": "U3 snoRNA binding", "id": "GO:0034511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034511", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN93" } ], "pmid": "" }, { "name": "U1 snRNA binding", "id": "GO:0030619", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030619", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FN93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN93" } ], "pmid": "" } ] } ] }, 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predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261332", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261332" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FND3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FND3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Brd7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FND3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FND3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FND3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05513", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05513", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758832", "url": "https://www.ncbi.nlm.nih.gov/gene/100758832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051831", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051831", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758832", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LFK7", "url": "https://www.orthodb.org/?gene=A0A8C2LFK7", "database": "OrthoDB", "categories": 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"MGKKHKKHKSDRHFYEEYVEKPLKLVLKVGGSEVTELSTGSSGHDSSLFEDRSDHDKHKDRKRKKRKKGEKQAPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDFQCHAPVRLDLPPEKPLTSSLARQEGWSCSELSVLKVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDRTDASQSGEDSGCWQREREDSGDAETQAFRSPTKDNKKKDKDVLDDKWRSGNSEREHEQIERVVQESGGKLTRRPANSQCEFERRKPDGTTTLGLLHPVEPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPNNFSISEFLATCQDYPYVMADSLLDVLTKGGHSRSLQDLDVLSPEDEGQTRALDTAREAEIAQVEPTGRLESSSQDRLTALQAVTNFGAPAEVFDSEEAEVFQRKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMYLAEQVTNNLKELTQQVTPGDVVSIHGVRKAMGISVPSPIMGNSFVDLTEECEEPKEACAVECGPDRS", "length": 661, "header": "tr|A0A9J7FND3-1|A0A9J7FND3_CRIGR Isoform 1 of Bromodomain-containing protein 7 isoform X3 OS=Cricetulus griseus OX=10029 GN=Brd7 PE=4 SV=1 CANONICAL=A0A9J7FND3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LFK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FND3/entry#A0A8C2LFK7-1", "sequence": { "sequence": "MGKKHKKHKSDRHFYEEYVEKPLKLVLKVGGSEVTELSTGSSGHDSSLFEDRSDHDKHKDRKRKKRKKGEKQAPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDFQCHAPVRLDLPPEKPLTSSLARQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDRTDASQSGEDSGCWQREREDSGDAETQAFRSPTKDNKKKDKDVLDDKWRSGNSEREHEQIERVVQESGGKLTRRPANSQCEFERRKPDGTTTLGLLHPVEPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPNNFSISEFLATCQDYPYVMADSLLDVLTKGGHSRSLQDLDVLSPEDEGQTRALDTAREAEIAQVEPTGRLESSSQDRLTALQAVTNFGAPAEVFDSEEAEVFQRKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMYLAEQVTNNLKELTQQVTPGDVVSIHGVRKAMGISVPSPIMGNSFVDLTEECEEPKEACAVECGPDRS", "length": 651, "header": "tr|A0A8C2LFK7-1|A0A8C2LFK7_CRIGR Computationally mapped isoform of Bromodomain-containing protein 7 isoform X4 OS=Cricetulus griseus OX=10029 GN=Brd7 PE=4 SV=1 CANONICAL=A0A9J7FND3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FND3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FND3/entry#A0A9J7FND3-1", "sequence": { "sequence": "MGKKHKKHKSDRHFYEEYVEKPLKLVLKVGGSEVTELSTGSSGHDSSLFEDRSDHDKHKDRKRKKRKKGEKQAPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDFQCHAPVRLDLPPEKPLTSSLARQEGWSCSELSVLKVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDRTDASQSGEDSGCWQREREDSGDAETQAFRSPTKDNKKKDKDVLDDKWRSGNSEREHEQIERVVQESGGKLTRRPANSQCEFERRKPDGTTTLGLLHPVEPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPNNFSISEFLATCQDYPYVMADSLLDVLTKGGHSRSLQDLDVLSPEDEGQTRALDTAREAEIAQVEPTGRLESSSQDRLTALQAVTNFGAPAEVFDSEEAEVFQRKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMYLAEQVTNNLKELTQQVTPGDVVSIHGVRKAMGISVPSPIMGNSFVDLTEECEEPKEACAVECGPDRS", "length": 661, "header": "tr|A0A9J7FND3-1|A0A9J7FND3_CRIGR Isoform 1 of Bromodomain-containing protein 7 isoform X3 OS=Cricetulus griseus OX=10029 GN=Brd7 PE=4 SV=1 CANONICAL=A0A9J7FND3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 407, "start_aa": "Thr", "end_pos": 407, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr407", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 611, "start_aa": "Thr", "end_pos": 611, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr611", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FND3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FND3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7FNL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQPEVPAPLANLKIQYTKIFINNEWHDSVSGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLFKLADLMERDRLLLATLEAINGGKVFASSYLFDLGGCIKALKYCAGWADKVHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDTAIEFAHNGVFYHQGQCCVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLNTGINQGPQIDKEQHEKILDLIESGKKEGAKLECGGGRWGNKGYFVQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTSYGLAAGVFTKDVDKAITVSSALQAGVVWVNCYMMLSPQCPFGGFKMSGNGRELGEHGIYEYTELKTVAMKISQKNS", "length": 498, "header": "tr|A0A9J7FNL7-1|A0A9J7FNL7_CRIGR Isoform 1 of aldehyde dehydrogenase (NAD(+)) OS=Cricetulus griseus OX=10029 GN=LOC100768654 PE=3 SV=1 CANONICAL=A0A9J7FNL7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FNL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7/entry#A0A9J7FNL7-1", "sequence": { "sequence": "MSQPEVPAPLANLKIQYTKIFINNEWHDSVSGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLFKLADLMERDRLLLATLEAINGGKVFASSYLFDLGGCIKALKYCAGWADKVHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDTAIEFAHNGVFYHQGQCCVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLNTGINQGPQIDKEQHEKILDLIESGKKEGAKLECGGGRWGNKGYFVQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTSYGLAAGVFTKDVDKAITVSSALQAGVVWVNCYMMLSPQCPFGGFKMSGNGRELGEHGIYEYTELKTVAMKISQKNS", "length": 498, "header": "tr|A0A9J7FNL7-1|A0A9J7FNL7_CRIGR Isoform 1 of aldehyde dehydrogenase (NAD(+)) OS=Cricetulus griseus OX=10029 GN=LOC100768654 PE=3 SV=1 CANONICAL=A0A9J7FNL7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 225, "start_aa": "Thr", "end_pos": 225, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr225", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768654", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768654", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NJC7-1", "protein_name": "retinal dehydrogenase", "gene_name": "ALDH1A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKKQGSPSNPAPVLPALPEPLKDLKIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPALCCGNTVVVKPAEQTPLSALYMGSLIKEAGFPPGVVNIVPGFGPTAGAAISHHMDIDKVSFTGSTEVGKLIKEAAGKTNLKRVTLELGGKSPNIIFADADLDEAVEFAHIGLFYHQGQCCIAGSRIFVEEPIYDEFVRRSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTVTIKIPQKNS", "length": 509 }, "evidence": [ { "id": "A0A9J7FNL7", "url": "https://omabrowser.org/oma/group/A0A9J7FNL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "I3LRS5-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSSAMPDIPVPLTNLKFQYTKIFINNEWHNSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGQLINKLADLIERDRLLLATMESMNGGKLFSNAYLMDLGGCIRTLRYCAGWADKIHGRTIPMDGNFFTYTRSEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLDAAVEFAHHGLFYHQGQCCIAASRLFVEESIYNEFVRKSVERAKKYVLGNPLTPGVNQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTLYGLSAGIFTKDIDKAITVSSALQSGTVWVNCYGVLSAHCPFGGFKMSGNGRELGEYGLHEYTEIKTVTIKISQKNS", "length": 501 }, "evidence": [ { "id": "A0A9J7FNL7", "url": "https://omabrowser.org/oma/group/A0A9J7FNL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSSGTPDLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKISQKNS", "length": 501 }, "evidence": [ { "id": "A0A9J7FNL7", "url": "https://omabrowser.org/oma/group/A0A9J7FNL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P54114-1", "protein_name": "Aldehyde dehydrogenase [NAD(P)+] 2", "gene_name": "ALD3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPTLYTDIEIPQLKISLKQPLGLFINNEFCPSSDGKTIETVNPATGEPITSFQAANEKDVDKAVKAARAAFDNVWSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPFHSNAKQDLAQIIELTRYYAGAVDKFNMGETIPLTFNKFAYTLKVPFGVVAQIVPWNYPLAMACRKMQGALAAGNTVIIKPAENTSLSLLYFATLIKKAGFPPGVVNVIPGYGSVVGKALGTHMDIDKISFTGSTKVGGSVLEASGQSNLKDITLECGGKSPALVFEDADLDKAIEWVANGIFFNSGQICTANSRVYVQSSIYDKFVEKFKETAKKEWDVAGKFDPFDEKCIVGPVISSTQYDRIKSYIERGKKEEKLDMFQTSEFPIGGAKGYFIPPTIFTDVPETSKLLRDEIFGPVVVVSKFTNYDDALKLANDTCYGLASAVFTKDVKKAHMFARDIKAGTVWINQTNQEEAKVPFGGFKMSGIGRESGDTGVDNYLQIKSVHVDLSLDK", "length": 506 }, "evidence": [ { "id": "A0A9J7FNL7", "url": "https://omabrowser.org/oma/group/A0A9J7FNL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aldehyde dehydrogenase (NAD+) activity", "id": "GO:0004029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004029", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FNL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNL7" }, { "id": "PF00171", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aldehyde dehydrogenase", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 489, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "1.2.1.3", "ec_name": "acetaldehyde + NAD(+) + H2O = acetate + NADH + 2 H(+).", "evidence": [ { "id": "1.2.1.3", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:1.2.1.3" }, { "id": "1.2.1.3", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=1.2.1.3" } ] } ], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 225 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 386, "end_pos": 388 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 420, "end_pos": 422 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FNQ2-1", "uniprot_ac": "A0A9J7FNQ2", "uniprot_id": "A0A9J7FNQ2_CRIGR", "mass": { "chemical_mass": 40238.0, "monoisotopic_mass": 40238.0 }, "refseq": { "ac": "XP_027264320", "name": "sorting nexin-15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264320" }, "gene_names": [ { "name": "Snx15", "type": "recommended", "evidence": [ { "id": "A0A9J7FNQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" } ] }, { "name": "Snx15", "type": "synonym", "evidence": [ { "id": "XP_027264320", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264320" } ] } ], "protein_names": [ { "name": "Sorting nexin-15 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FNQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2/entry#names_and_taxonomy" } ] }, { "name": "sorting nexin-15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027264320", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264320" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264320", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264320" } ] }, { "annotation": "May be involved in several stages of intracellular trafficking. Overexpression of SNX15 disrupts the normal trafficking of proteins from the plasma membrane to recycling endosomes or the TGN.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LLF8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLF8#function" }, { "database": "UniProtKB", "id": "ARBA00053809", "url": "https://www.uniprot.org/uniprotkb/ARBA00053809#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Snx15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FNQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FNQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02677", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02677", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768682", "url": "https://www.ncbi.nlm.nih.gov/gene/100768682", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768682", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LLF8", "url": "https://www.orthodb.org/?gene=A0A8C2LLF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FNQ2", "url": "https://www.orthodb.org/?gene=A0A9J7FNQ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15508", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15508", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15508:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15508:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04212", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04212", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264320", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264320", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LLF8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LLF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFPLRGARGRGLSAAHHLGAGLRTAVDCRLACVLVRPGTNVVQMQSTDFSKQENYGLTQFISKKDPEDIKEVVVWKRYSDFRKLHGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVPIPALNNSPQLKEFFRGGEVTRPSEVSRNLCILPPPLIPTPPPDEARLLQPLPAERRGQEELDVPVDPLPSSPAQEALDLLFSCDSTEEASSSPARGPLSEAELALFDPYSKEESTGPSPTHTGELAAMEVQSKRLDQEPWEPGGQEKEESEDGEPAPAYLSQATELITQALRNEKAGAYAAALQGYRDGVHILLQGVSGDPSPARREGVKKKAAEYLRRAETLHGQLP", "length": 364, "header": "tr|A0A9J7FNQ2-1|A0A9J7FNQ2_CRIGR Isoform 1 of Sorting nexin-15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Snx15 PE=4 SV=1 CANONICAL=A0A9J7FNQ2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LLF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2/entry#A0A8C2LLF8-1", "sequence": { "sequence": 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"MILICQFISKKDPEDIKEVVVWKRYSDFRKLHGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVPIPALNNSPQLKEFFRGGEVTRPSEVSRNLCILPPPLIPTPPPDEARLLQPLPAERRGQEELDVPVDPLPSSPAQEALDLLFSCDSTEEASSSPARGPLSEAELALFDPYSKEESTGPSPTHTGELAAMEVQSKRLDQEPWEPGGQEKEESEDGEPAPAYLSQATELITQALRNEKAGAYAAALQGYRDGVHILLQGVSGDPSPARREGVKKKAAEYLRRAETLHGQLP", "length": 310, "header": "tr|A0A9J7JKP4-1|A0A9J7JKP4_CRIGR Computationally mapped isoform of Sorting nexin-15 isoform X4 OS=Cricetulus griseus OX=10029 GN=Snx15 PE=4 SV=1 CANONICAL=A0A9J7FNQ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FNQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNQ2" }, { "id": "PS50195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PX", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 157, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"A0A9J7FNR2_CRIGR", "mass": { "chemical_mass": 21683.0, "monoisotopic_mass": 21683.0 }, "refseq": { "ac": "XP_027262455", "name": "oocyte-secreted protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262455" }, "gene_names": [ { "name": "LOC100756603", "type": "recommended", "evidence": [ { "id": "A0A9J7FNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2" } ] }, { "name": "LOC100756603", "type": "synonym", "evidence": [ { "id": "XP_027262455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262455" } ] } ], "protein_names": [ { "name": "Oocyte-secreted protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2/entry#names_and_taxonomy" } ] }, { "name": "oocyte-secreted protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027262455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262455" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027262455.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262455", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262455" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756603", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FNR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FNR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756603", "url": "https://www.ncbi.nlm.nih.gov/gene/100756603", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756603", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756603", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FNR2", "url": "https://www.orthodb.org/?gene=A0A9J7FNR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14380", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14380", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14380:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14380:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027262455", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262455", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FNR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSFPGLQGFLLLLFFMRTCADDWSAFRLQCTNHWFYLRIKATLFPNIFMDPDEVFLGIGCPVSTSWPNDIYDFTYRTYSCGIVNKVLHDVTLLQTKLTYISKNSTLRAEMPLSCVLHSRYPLLCEAEIRGDFTGNPPEWEVDMTTKSVPEVPTNYSTSSEEDYFYQDYQIPGTSCLKPVEKRSAGNSS", "length": 189, "header": "tr|A0A9J7FNR2-1|A0A9J7FNR2_CRIGR Isoform 1 of Oocyte-secreted protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756603 PE=3 SV=1 CANONICAL=A0A9J7FNR2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FNR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNR2/entry#A0A9J7FNR2-1", "sequence": { "sequence": "MKSFPGLQGFLLLLFFMRTCADDWSAFRLQCTNHWFYLRIKATLFPNIFMDPDEVFLGIGCPVSTSWPNDIYDFTYRTYSCGIVNKVLHDVTLLQTKLTYISKNSTLRAEMPLSCVLHSRYPLLCEAEIRGDFTGNPPEWEVDMTTKSVPEVPTNYSTSSEEDYFYQDYQIPGTSCLKPVEKRSAGNSS", "length": 189, "header": "tr|A0A9J7FNR2-1|A0A9J7FNR2_CRIGR Isoform 1 of Oocyte-secreted protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756603 PE=3 SV=1 CANONICAL=A0A9J7FNR2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MDTQRDVMMDQHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQNVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEGEILSNGNDQRSVSIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAAYLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSHNQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQRDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKYTSEDVVTLRVTDPSQASFFVVYNMVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLLKFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRHCCTSVPHHTRAVQDFAPA", "length": 573, "header": "tr|A0A9J7FNT4-1|A0A9J7FNT4_CRIGR Isoform 1 of DET1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Det1 PE=4 SV=1 CANONICAL=A0A9J7FNT4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FNT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4/entry#A0A9J7FNT4-1", "sequence": { "sequence": "MDTQRDVMMDQHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQNVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEGEILSNGNDQRSVSIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAAYLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSHNQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQRDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKYTSEDVVTLRVTDPSQASFFVVYNMVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLLKFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRHCCTSVPHHTRAVQDFAPA", "length": 573, "header": "tr|A0A9J7FNT4-1|A0A9J7FNT4_CRIGR Isoform 1 of DET1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Det1 PE=4 SV=1 CANONICAL=A0A9J7FNT4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4/entry#A0A9J7FSJ0-1", "sequence": { "sequence": 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"A0A9J7FNT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4" } ], "pmid": "" }, { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 389, "end_pos": 391 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FNT9-1", "uniprot_ac": "A0A9J7FNT9", "uniprot_id": "A0A9J7FNT9_CRIGR", "mass": { "chemical_mass": 44998.0, "monoisotopic_mass": 44998.0 }, "refseq": { "ac": "XP_027262559", "name": "tear acid lipase-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262559" }, "gene_names": [ { "name": "LOC100757710", "type": "recommended", "evidence": [ { "id": "A0A9J7FNT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9" } ] }, { "name": "LOC100757710", "type": "synonym", "evidence": [ { "id": "XP_027262559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262559" } ] } ], "protein_names": [ { "name": "Lipase", "type": "recommended", "evidence": [ { "id": "A0A9J7FNT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9/entry#names_and_taxonomy" } ] }, { "name": "tear acid lipase-like protein", "type": "synonym", "evidence": [ { "id": "XP_027262559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262559" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262559" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FNT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757710", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FNT9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FNT9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757710", "url": "https://www.ncbi.nlm.nih.gov/gene/100757710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757710", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FNT9", "url": "https://www.orthodb.org/?gene=A0A9J7FNT9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11005", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11005", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FNT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWWLLSTMCLVHVCGNIFCLFETTMNPEVHMNVSEIIIRWGYASEEYEAVTDDGYILPINRIPHGKNNTNSTGPKKVVLCQHGLFATPGVWVSNPPNNSLAFILADAGYDVWMGNSRGSTWAKKHLYLDPNSKEFWAFSYDEMIKYDIPATINFILKKTGQKQIYYVGHNQGTLIALGAFSTNQQLAEKIKMCFLLAPVATVKYDEDFPHLLSYICPTSLKLIFGEKELLPMAVFNKQSGYTCNVIVTDTTCFAIKVLITGYVSQHLNKSRTDVYITHSLARTSVQNLLHYSQAVNTGVFGAYDWGSPSLNMLHYNQTTPPLYNLEDMKVPTAMWSGRNDFLADDIDVAHLVSKLPNLIYHKIIADFSHLDFVVGLSAYDEVSKGILKLLHESETENLH", "length": 399, "header": "tr|A0A9J7FNT9-1|A0A9J7FNT9_CRIGR Isoform 1 of Lipase OS=Cricetulus griseus OX=10029 GN=LOC100757710 PE=3 SV=1 CANONICAL=A0A9J7FNT9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FNT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT9/entry#A0A9J7FNT9-1", "sequence": { "sequence": "MWWLLSTMCLVHVCGNIFCLFETTMNPEVHMNVSEIIIRWGYASEEYEAVTDDGYILPINRIPHGKNNTNSTGPKKVVLCQHGLFATPGVWVSNPPNNSLAFILADAGYDVWMGNSRGSTWAKKHLYLDPNSKEFWAFSYDEMIKYDIPATINFILKKTGQKQIYYVGHNQGTLIALGAFSTNQQLAEKIKMCFLLAPVATVKYDEDFPHLLSYICPTSLKLIFGEKELLPMAVFNKQSGYTCNVIVTDTTCFAIKVLITGYVSQHLNKSRTDVYITHSLARTSVQNLLHYSQAVNTGVFGAYDWGSPSLNMLHYNQTTPPLYNLEDMKVPTAMWSGRNDFLADDIDVAHLVSKLPNLIYHKIIADFSHLDFVVGLSAYDEVSKGILKLLHESETENLH", "length": 399, "header": "tr|A0A9J7FNT9-1|A0A9J7FNT9_CRIGR Isoform 1 of Lipase OS=Cricetulus griseus OX=10029 GN=LOC100757710 PE=3 SV=1 CANONICAL=A0A9J7FNT9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 87, "start_aa": "Thr", "end_pos": 87, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"Protein" ] } ], "sequence": { "sequence": "MAFQDLLDQVGSLGRFQILQMTFVFICNVIVGPHSLLENFTAAIPSHRCWVSILDNDTFSDNKSGILSQDDLLRISIPLDSNMRPDKCHRFVQPQWHLLHQNGTFSNVTEPEIEPCVDGWVYDQSTFLSTIVTEWDLVCEYQSLDSIAKFLYLTGMFVGNTLYSHLTDRFGRKLLFICALVQLAVTETCVAFAPTFKIYCFLRFLTGISIFSIMTNGTLLVIEWTKPKFQAMATALLLCAMAIGHIVLAGLAFVLQNWHHLQLVLSVPVFLLLVPTRWLSESARWLVVTNKPQKSLKELRRVAHINGMKSSGDTLTMEVVITTMKEELETSQTKSSLWDLFRTPNMRKRMCLLCLVRFMTWVSMFGLMLNFQYLKTNAFLSLCLNGIISILSSLLGTFLLNHMGRKISQLFVISLFGISFLAIAFVPQEMKILRTVLATLEGGLSFISACSILVHSNELLPTTIRATALGIIGISGNIGAALSPLFMILVTYFDSLPWIIYGVFPIIGSLFVLLLPETKNQPLPDSIQDVEYEGRFSKQAKQKDTFIKVTQF", "length": 552, "header": "tr|A0A9J7FP33-1|A0A9J7FP33_CRIGR Isoform 1 of Solute carrier family 22 member 19 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773384 PE=4 SV=1 CANONICAL=A0A9J7FP33-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FP33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33/entry#A0A9J7FP33-1", "sequence": { "sequence": "MAFQDLLDQVGSLGRFQILQMTFVFICNVIVGPHSLLENFTAAIPSHRCWVSILDNDTFSDNKSGILSQDDLLRISIPLDSNMRPDKCHRFVQPQWHLLHQNGTFSNVTEPEIEPCVDGWVYDQSTFLSTIVTEWDLVCEYQSLDSIAKFLYLTGMFVGNTLYSHLTDRFGRKLLFICALVQLAVTETCVAFAPTFKIYCFLRFLTGISIFSIMTNGTLLVIEWTKPKFQAMATALLLCAMAIGHIVLAGLAFVLQNWHHLQLVLSVPVFLLLVPTRWLSESARWLVVTNKPQKSLKELRRVAHINGMKSSGDTLTMEVVITTMKEELETSQTKSSLWDLFRTPNMRKRMCLLCLVRFMTWVSMFGLMLNFQYLKTNAFLSLCLNGIISILSSLLGTFLLNHMGRKISQLFVISLFGISFLAIAFVPQEMKILRTVLATLEGGLSFISACSILVHSNELLPTTIRATALGIIGISGNIGAALSPLFMILVTYFDSLPWIIYGVFPIIGSLFVLLLPETKNQPLPDSIQDVEYEGRFSKQAKQKDTFIKVTQF", "length": 552, "header": "tr|A0A9J7FP33-1|A0A9J7FP33_CRIGR Isoform 1 of Solute carrier family 22 member 19 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773384 PE=4 SV=1 CANONICAL=A0A9J7FP33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33/entry#A0A9J7GV20-1", "sequence": { "sequence": "MAFQDLLDQVGSLGRFQILQMTFVFICNVIVGPHSLLENFTAAIPSHRCWVSILDNDTFSDNKSGILSQDDLLRISIPLDSNMRPDKCHRFVQPQWHLLHQNGTFSNVTEPEIEPCVDGWVYDQSTFLSTIVTEWDLVCEYQSLDSIAKFLYLTGMFVGNTLYSHLTDRFGRKLLFICALVQLAVTETCVAFAPTFKIYCFLRFLTGISIFSIMTNGTLLVIEWTKPKFQAMATALLLCAMAIGHIVLAGLAFVLQNWHHLQLVLSVPVFLLLVPTRWLSESARWLVVTNKPQKSLKELRRVAHINGMKSSGDTLTMEVVITTMKEELETSQTKSSLWDLFRTPNMRKRMCLLCLVRFMTWVSMFGLMLNFQYLKTNAFLSLCLNGIISILSSLLGTFLLNHMGRKISQLFVISLFGISFLAIAFVPQEMKILRTVLATLEGGLSFISACSILVHSNELLPTTIRATALGIIGISGNIGAALSPLFMILVTYFDSLPWIIYGVFPIIGSLFVLLLPETKNQPLPDSIQDVEYDWRFSKQAKQKDTFIKVTQF", "length": 552, "header": "tr|A0A9J7GV20-1|A0A9J7GV20_CRIGR Computationally mapped isoform of Solute carrier family 22 member 19 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100773384 PE=4 SV=1 CANONICAL=A0A9J7FP33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33/entry#A0A9J7GYZ9-1", "sequence": { "sequence": "MAFQDLLDQVGSLGRFQILQMTFVFICNVIVGPHSLLENFTAAIPSHRCWVSILDNDTFSDNKSGILSQDDLLRISIPLDSNMRPDKCHRFVQPQWHLLHQNGTFSNVTEPEIEPCVDGWVYDQSTFLSTIVTEWDLVCEYQSLDSIAKFLYLTGMFVGNTLYSHLTDRFGRKLLFICALVQLAVTETCVAFAPTFKIYCFLRFLTGISIFSIMTNGTLLVIEWTKPKFQAMATALLLCAMAIGHIVLAGLAFVLQNWHHLQLVLSVPVFLLLVPTRWLSESARWLVVTNKPQKSLKELRRVAHINGMKSSGDTLTMEVVITTMKEELETSQTKSSLWDLFRTPNMRKRMCLLCLVRFMTWVSMFGLMLNFQYLKTNAFLSLCLNGIISILSSLLGTFLLNHMGRKISQLFVISLFGISFLAIAFVPQEMKILRTVLATLEGGLSFISACSILVHSNELLPTTIRATALGIIGISGNIGAALSPLFMILVTYFDSLPWIIYGVFPIIGSLFVLLLPETKNQPLPDSIQDVEYEFSKQAKQKDTFIKVTQF", "length": 550, "header": "tr|A0A9J7GYZ9-1|A0A9J7GYZ9_CRIGR Computationally mapped isoform of Solute carrier family 22 member 19 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100773384 PE=4 SV=1 CANONICAL=A0A9J7FP33-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773384", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FP33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP33" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 520, "start_aa": "Thr", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 107, "end_pos": 109 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 56, "end_pos": 58 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 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"A0A9J7FP44-1", "uniprot_ac": "A0A9J7FP44", "uniprot_id": "A0A9J7FP44_CRIGR", "mass": { "chemical_mass": 28305.0, "monoisotopic_mass": 28305.0 }, "refseq": { "ac": "XP_027261538", "name": "chemokine-like factor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261538" }, "gene_names": [ { "name": "LOC103163017", "type": "recommended", "evidence": [ { "id": "A0A9J7FP44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44" } ] }, { "name": "LOC103163017", "type": "synonym", "evidence": [ { "id": "XP_027261538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261538" } ] } ], "protein_names": [ { "name": "Chemokine-like factor", "type": "synonym", "evidence": [ { "id": "A0A9J7FP44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44/entry#names_and_taxonomy" } ] }, { "name": "chemokine-like factor", "type": "synonym", "evidence": [ { "id": "XP_027261538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261538" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261538" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163017", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44", "locus": {} } ], "crossref": [ { "id": "A0A9J7FP44", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FP44", "database": "AlphaFoldDB", "categories": [] }, { "id": "103163017", "url": "https://www.ncbi.nlm.nih.gov/gene/103163017", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163017", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163017", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FP44", "url": "https://www.orthodb.org/?gene=A0A9J7FP44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027261538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261538", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FP44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPAYTGRESRRDSRFDTSYPPSRASLQSQFEYPHSRSESLASISSAASRKGPPPSATPSIRSIQSVFKEQIARKVLPKKFTQSQKAPLPPHLQGHASIKGRPEGLAKVPERVRDSFKNFFFSPTGMLKVLRMCVIAASVFCFIIGGAHKVFIAITIEETCIVLFFIVIYLLTLQHWLTCVNWPLLDFINSFISTVFLGGVALIIFQEKERKRLHYVGGILCLFATVLCIIDGFLVIKNMRKDKKKGPGYIH", "length": 252, "header": "tr|A0A9J7FP44-1|A0A9J7FP44_CRIGR Isoform 1 of Chemokine-like factor OS=Cricetulus griseus OX=10029 GN=LOC103163017 PE=4 SV=1 CANONICAL=A0A9J7FP44-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FP44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP44/entry#A0A9J7FP44-1", "sequence": { "sequence": "MNPAYTGRESRRDSRFDTSYPPSRASLQSQFEYPHSRSESLASISSAASRKGPPPSATPSIRSIQSVFKEQIARKVLPKKFTQSQKAPLPPHLQGHASIKGRPEGLAKVPERVRDSFKNFFFSPTGMLKVLRMCVIAASVFCFIIGGAHKVFIAITIEETCIVLFFIVIYLLTLQHWLTCVNWPLLDFINSFISTVFLGGVALIIFQEKERKRLHYVGGILCLFATVLCIIDGFLVIKNMRKDKKKGPGYIH", "length": 252, "header": "tr|A0A9J7FP44-1|A0A9J7FP44_CRIGR Isoform 1 of Chemokine-like factor OS=Cricetulus griseus OX=10029 GN=LOC103163017 PE=4 SV=1 CANONICAL=A0A9J7FP44-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 58, "start_aa": "Thr", "end_pos": 58, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr58", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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predicted by automated computational analysis. 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##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263327", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263327" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774538", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FPQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FPQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15223", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15223", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774538", "url": "https://www.ncbi.nlm.nih.gov/gene/100774538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774538", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774538", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FPQ9", "url": "https://www.orthodb.org/?gene=A0A9J7FPQ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263327", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263327", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLIMFQDLTSSNSSRFQVSEFILMGFPGIHSWQHWLSLPLALLYVLALIANILIITTIYQEESLHQPMYHFLGILAIVDMGLATTIMPKILAILWFNAKTISLPECFAQMYAIHSFIAMESGIFVCMAIDRYVAICRPLRYPSIVTESFVIKATLIMFLRSCGSFISVPVLAAQRNYCSRNQIEHCLCSNLGVTSLSCDDRTVNSISQLVIAWAIMGGDLGLIMISYALILRAVLKLNSAEAASKALSTCTSHLILIFFFYTVIVVLSITHGSQMKVPLIPVLLNVLHNVIPPALNPMVYALKNRELKQGLYRVIGLELKGNHE", "length": 324, "header": "tr|A0A9J7FPQ9-1|A0A9J7FPQ9_CRIGR Isoform 1 of Olfactory receptor 56B2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774538 PE=3 SV=1 CANONICAL=A0A9J7FPQ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9/entry#A0A9J7FPQ9-1", "sequence": { "sequence": "MLIMFQDLTSSNSSRFQVSEFILMGFPGIHSWQHWLSLPLALLYVLALIANILIITTIYQEESLHQPMYHFLGILAIVDMGLATTIMPKILAILWFNAKTISLPECFAQMYAIHSFIAMESGIFVCMAIDRYVAICRPLRYPSIVTESFVIKATLIMFLRSCGSFISVPVLAAQRNYCSRNQIEHCLCSNLGVTSLSCDDRTVNSISQLVIAWAIMGGDLGLIMISYALILRAVLKLNSAEAASKALSTCTSHLILIFFFYTVIVVLSITHGSQMKVPLIPVLLNVLHNVIPPALNPMVYALKNRELKQGLYRVIGLELKGNHE", "length": 324, "header": "tr|A0A9J7FPQ9-1|A0A9J7FPQ9_CRIGR Isoform 1 of Olfactory receptor 56B2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774538 PE=3 SV=1 CANONICAL=A0A9J7FPQ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to lipid", "id": "GO:0071396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071396", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FPQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPQ9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 300, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FPR7-1", "uniprot_ac": "A0A9J7FPR7", "uniprot_id": "A0A9J7FPR7_CRIGR", "mass": { "chemical_mass": 166632.0, "monoisotopic_mass": 166632.0 }, "refseq": { "ac": "XP_027263156", "name": "protein CC2D2B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263156" }, "gene_names": [ { "name": "Cc2d2b", "type": "recommended", "evidence": [ { "id": "A0A9J7FPR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ] }, { "name": "Cc2d2b", "type": "synonym", "evidence": [ { "id": "XP_027263156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263156" } ] } ], "protein_names": [ { "name": "Protein CC2D2B isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7FPR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7/entry#names_and_taxonomy" } ] }, { "name": "protein CC2D2B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027263156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263156" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027263156.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263156", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263156" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cc2d2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7", "locus": {} } ], "crossref": [ { "id": "100763170", "url": "https://www.ncbi.nlm.nih.gov/gene/100763170", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052434", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052434", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056288", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056288", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056290", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056290", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763170", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FPR7", "url": "https://www.orthodb.org/?gene=A0A9J7FPR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20837", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20837", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20837:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20837:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24656", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24656", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263156", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263156", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1437, "header": "tr|A0A9J7FPR7-1|A0A9J7FPR7_CRIGR Isoform 1 of Protein CC2D2B isoform X4 OS=Cricetulus griseus OX=10029 GN=Cc2d2b PE=4 SV=1 CANONICAL=A0A9J7FPR7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FPR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7/entry#A0A9J7FPR7-1", "sequence": { "sequence": "MKKISKRREEIFKKMSEAAYSSTEEIMDRHLFKDIDAEENRNITETLRGKVREKLKNAKISQGDKSSSQLLAETKSHQWSKLTPQTEVLLDEGLSFFILSGEEDSAVSRSAQQKSVSDSYFKPSAFGGSLQTAAEGQDEDFVEEVILMDLFEVKAAEYEDDQEQMKRQEAIVFVPSSSPVANQRKLPKGMMPRILEDEGFYIKKKPATYKKIRNKMENRLLSLQEGKCWFEESGEIMSLPSPIRQSWNFRISMSKESLNPALKTIHRKAVKSDLGCCFRSRMDGQREMYQLDLNIVGLQFSHHPLFNQEQVLCARLLQLCESFQDRQKQGLSQLLYEKLKALTETTKLARNKPEISQFTRESLEDYYWQISDTKRLYHEEREKDHSLLHRVLQTWKQMKSLRQKQGFTSTPVKLQFHKIKMNTWDEQNQAGMLSGEENEETPFQNEDTWVGLPYIASDLEGMDMERIKPMTLVPQLSFTAELTNVSKCSLSEQKRRAKIQKLKYFIKIFYNDKQVSCTSVSPLQFDFKVMFQQIFNVQLLYWPETICLEVYEISKRTSLLVKLYLPLPNKTELKDKTDLEYTEFSSDKLARPMDGGVGSNVPFNLEGSENEKVCLLTSGKLSYSLSWALDENGIPLTPVSQSFRSAYCSVLRNVDARGVPGLPWPMNSQKLCDWADDIRIDPNDPEYSDITELIMYLRHKGQEIPKYFRLEQLQDEFNFVSEEEMKRSKRFQLLQLRNAGQLDLFLLQQMPLYDKEIPDIVFQEYESQAQKDMSISDVNSITAQRINSVNFLRKVRSLIMKRIIKVSKFNLSDIVADYEEIVSTSQLTDVICKFIEPRRKLKPQRKERRKVTAQTVSDGDIKILVRILRAYNIPTRKKISHRTLGMATYSRSSMVHRRHQEAIKFVASSDFLNEDTVHPFIEVSFQHTVYQTNTASGSHPCWNEEIKVDFISPGHDYGFSTLSKIKDNIHINVFDEVVIEKHEDHCLKSCSTHAYIQKNWLGSISFPFSALLQQSEISGTFQVNIPPILLGYTWSNTYVPPREDCSGQNPKECTFLNIFATIEPQISYITFNPKLDEFSDQIDVLQRAQIFTRNCKAMFPNRRVVTTVFNGEGMQVFVTRFIKALNPPQQLLDIFLHDSNATLDLIARFVSLIPFTTETLDENDGFDIWMTSECCISLAIGNKEEHAILLCNFFLYFGKKALVLLGTSVLEGHVAYVLTQETGESLLWNPSTGQCYKQFDPFCPLQSVDCLFNDRNVWFNIQQNNTPMAVHFDYSKESFWKQLLPKDFQWTKAQSVQPEEIVYCDTNKGMVEDLKSRMERALKCKMMEWRPKHPTRWNRQCTSVLRQILPKLEFYTGSFASFEDSELERLLQFYWVTGFPIQMPYTDVQSVIDAVYQTGVHSSEFPQTEFALAVYIHPYPNNILSVWVYLASLARYQ", "length": 1437, "header": "tr|A0A9J7FPR7-1|A0A9J7FPR7_CRIGR Isoform 1 of Protein CC2D2B isoform X4 OS=Cricetulus griseus OX=10029 GN=Cc2d2b PE=4 SV=1 CANONICAL=A0A9J7FPR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7/entry#A0A9J7GV65-1", "sequence": { "sequence": "MKKISKRREEIFKKMSEAAYSSTEEIMDRHLFKEENRNITETLRGKVREKLKNAKISQGDKSSSQLLAETKSHQWSKTEVLLDEGLSFFILSGEEDSAVSRSAQQKSVSDSYFKPSAFGGSLQTAAEGQDEDFVEEVILMDLFEVKAAEYEDDQEQMKRQEAIVFVPSSSPVANQRKLPKGMMPRILEDEGFYIKKKPATYKKIRNKMENRLLSLQEGKCWFEESGEIMSLPSPIRQSWNFRISMSKESLNPALKTIHRKAVKSDLGCCFRSRMDGQREMYQLDLNIVGLQFSHHPLFNQEQVLCARLLQLCESFQDRQKQGLSQLLYEKLKALTETTKLARNKPEISQFTRESLEDYYWQISDTKRLYHEEREKDHSLLHRVLQTWKQMKSLRQKQGFTSTPVKLQFHKIKMNTWDEQNQAGMLSGEENEETPFQNEDTWVGLPYIASDLEGMDMERIKPMTLVPQLSFTAELTNVSKCSLSEQKRRAKIQKLKYFIKIFYNDKQVSCTSVSPLQFDFKVMFQQIFNVQLLYWPETICLEVYEISKRTSLLVKLYLPLPNKTELKDKTDLEYTEFSSDKLARPMDGGVGSNVPFNLEGSENEKVCLLTSGKLSYSLSWALDENGIPLTPVSQSFRSAYCSVLRNVDARGVPGLPWPMNSQKLCDWADDIRIDPNDPEYSDITELIMYLRHKGQEIPKYFRLEQLQDEFNFVSEEEMKRSKRFQLLQLRNAGQLDLFLLQQMPLYDKEIPDIVFQEYESQAQKDMSISDVNSITAQRINSVNFLRKVRSLIMKRIIKVSKFNLSDIVADYEEIVSTSQLTDVICKFIEPRRKLKPQRKERRKVTAQTVSDGDIKILVRILRAYNIPTRKKISHRTLGMATYSRSSMVHRRHQEAIKFVASSDFLNEDTVHPFIEVSFQHTVYQTNTASGSHPCWNEEIKVDFISPGHDYGFSTLSKIKDNIHINVFDEVVIEKHEDHCLKSCSTHAYIQKNWLGSISFPFSALLQQSEISGTFQVNIPPILLGYTWSNTYVPPREDCSGQNPKECTFLNIFATIEPQISYITFNPKLDEFSDQIDVLQRAQIFTRNCKAMFPNRRVVTTVFNGEGMQVFVTRFIKALNPPQQLLDIFLHDSNATLDLIARFVSLIPFTTETLDENDGFDIWMTSECCISLAIGNKEEHAILLCNFFLYFGKKALVLLGTSVLEGHVAYVLTQETGESLLWNPSTGQCYKQFDPFCPLQSVDCLFNDRNVWFNIQQNNTPMAVHFDYSKESFWKQLLPKDFQWTKAQSVQPEEIVYCDTNKGMVEDLKSRMERALKCKMMEWRPKHPTRWNRQCTSVLRQILPKLEFYTGSFASFEDSELERLLQFYWVTGFPIQMPYTDVQSVIDAVYQTGVHSSEFPQTEFALAVYIHPYPNNILSVWVYLASLARYQ", "length": 1429, "header": "tr|A0A9J7GV65-1|A0A9J7GV65_CRIGR Computationally mapped isoform of Protein CC2D2B isoform X3 OS=Cricetulus griseus OX=10029 GN=Cc2d2b PE=4 SV=1 CANONICAL=A0A9J7FPR7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763170", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "pmid": "" }, { "name": "protein localization to ciliary transition zone", "id": "GO:1904491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1140, "end_pos": 1142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1264, "end_pos": 1266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 810, "end_pos": 812, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FPR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR7" }, { "id": "SM00239", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00239" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 862, "end_pos": 1020, "start_aa": "Lys", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1140, "end_pos": 1142 }, { "start_pos": 1264, "end_pos": 1266 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 810, "end_pos": 812 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FPS4-1", "uniprot_ac": "A0A9J7FPS4", "uniprot_id": "A0A9J7FPS4_CRIGR", "mass": { "chemical_mass": 146389.0, "monoisotopic_mass": 146389.0 }, "refseq": { "ac": "XP_027265667", "name": "SUMO-interacting motif-containing protein 1 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265667" }, "gene_names": [ { "name": "Simc1", "type": "recommended", "evidence": [ { "id": "A0A9J7FPS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4" } ] }, { "name": "Simc1", "type": "synonym", "evidence": [ { "id": "XP_027265667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265667" } ] } ], "protein_names": [ { "name": "SUMO-interacting motif-containing protein 1 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027265667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265667" }, { "id": "A0A9J7FPS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265667" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Simc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4", "locus": {} } ], "crossref": [ { "id": "100768496", "url": "https://www.ncbi.nlm.nih.gov/gene/100768496", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768496", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768496", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FPS4", "url": "https://www.orthodb.org/?gene=A0A9J7FPS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23187", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23187", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23187:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23187:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027265667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265667", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRETRTRAKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPPNLQTCTSLSGKEVMETPGDIGSQSAAPRIVNNDPVDLDLLEENMFEGSRPPPSINQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNNSSSSNQRSSLPCPQQDMPCQPQGLLCPLQALSCPLRASPCPPRASSCPPQALSCPPQASSCPSQTVQCQLQALPHPPQEVPCPPQNVPCPQQNMPSTRQNISWHPQHPLYPPQDTLGLPQDVPGQPQNLSYPQDVPQLQDIPWSLQDMPLSLQDVLQSLQEMPPLLGDVPQSPEVMQVPGYVTQSPEVMQVPGGVIRSSGVAQLSGGVTQSSGIAQSSGGLTQSSGVAQSSGGVTQSSGGVMWSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGVTQSSGGVTQSSEGLIQSSGGVTQSSGGVMQSSGGVTQSSGVAQSSGGVTQSSGGVILSSGGVTQSSGDVTQSSGGVTQSSGGVTLSSGGVTQSSGGVTQSSGGVTRSSGGVTQSSGGVMWSSGGVTLSSRGVTQTSGGVTQSSGGVMQSLGGVTPSSGGVMRSSGGVTLSSGGVTLSSGGVTPSSGGVTPSSGGVTPSSGGVTPSSGGVTQSSGGVTPSSGGVMQSSGGVTPSSGGVMRSSGGVTPSSGGVTPSSGGVTPSSGGVMKLSTVSQSSVDMMQSPGSVSQSSGDVMQSPGSVPQSSGEVIESPGGMLQSPGEVMQSPGGVLQSPGGVPQSVGDTPHLPDVSHSSLRLLNLARDKPKTSPDEVQNHDTPMDISAPSSPNCSTNPQSEFSLEKVPWLSATDSLARKERSLPQLANPGPAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTQPQDGTQTSSGTGVMKAASDHLSPQPNLTRNTNQLVVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLTHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASQH", "length": 1394, "header": "tr|A0A9J7FPS4-1|A0A9J7FPS4_CRIGR Isoform 1 of SUMO-interacting motif-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FPS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#A0A9J7FPS4-1", "sequence": { "sequence": "MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRETRTRAKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPPNLQTCTSLSGKEVMETPGDIGSQSAAPRIVNNDPVDLDLLEENMFEGSRPPPSINQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNNSSSSNQRSSLPCPQQDMPCQPQGLLCPLQALSCPLRASPCPPRASSCPPQALSCPPQASSCPSQTVQCQLQALPHPPQEVPCPPQNVPCPQQNMPSTRQNISWHPQHPLYPPQDTLGLPQDVPGQPQNLSYPQDVPQLQDIPWSLQDMPLSLQDVLQSLQEMPPLLGDVPQSPEVMQVPGYVTQSPEVMQVPGGVIRSSGVAQLSGGVTQSSGIAQSSGGLTQSSGVAQSSGGVTQSSGGVMWSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGVTQSSGGVTQSSEGLIQSSGGVTQSSGGVMQSSGGVTQSSGVAQSSGGVTQSSGGVILSSGGVTQSSGDVTQSSGGVTQSSGGVTLSSGGVTQSSGGVTQSSGGVTRSSGGVTQSSGGVMWSSGGVTLSSRGVTQTSGGVTQSSGGVMQSLGGVTPSSGGVMRSSGGVTLSSGGVTLSSGGVTPSSGGVTPSSGGVTPSSGGVTPSSGGVTQSSGGVTPSSGGVMQSSGGVTPSSGGVMRSSGGVTPSSGGVTPSSGGVTPSSGGVMKLSTVSQSSVDMMQSPGSVSQSSGDVMQSPGSVPQSSGEVIESPGGMLQSPGEVMQSPGGVLQSPGGVPQSVGDTPHLPDVSHSSLRLLNLARDKPKTSPDEVQNHDTPMDISAPSSPNCSTNPQSEFSLEKVPWLSATDSLARKERSLPQLANPGPAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTQPQDGTQTSSGTGVMKAASDHLSPQPNLTRNTNQLVVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLTHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASQH", "length": 1394, "header": "tr|A0A9J7FPS4-1|A0A9J7FPS4_CRIGR Isoform 1 of SUMO-interacting motif-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#A0A9J7FSY5-1", "sequence": { "sequence": "MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRETRTRAKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPPNLQTCTSLSGKEVMETPGDIGSQSAAPRIVNNDPVDLDLLEENMFEGSRPPPSINQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNNSSSSNQRSSLPCPQQDMPCQPQGLLCPLQALSCPLRASPCPPRASSCPPQALSCPPQASSCPSQTVQCQLQALPHPPQEVPCPPQNVPCPQQNMPSTRQNISWHPQHPLYPPQDTLGLPQDVPGQPQNLSYPQDVPQLQDIPWSLQDMPLSLQDVLQSLQEMPPLLGDVPQSPEVMQVPGYVTQSPEVMQVPGGVIRSSGVAQLSGGVTQSSGIAQSSGGLTQSSGVAQSSGGVTQSSGGVMWSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGVTQSSGGVTQSSEGLIQSSGGVTQSSGGVMQSSGGVTQSSGVAQSSGGVTQSSGGVILSSGGVTQSSGDVTQSSGGVTQSSGGVTLSSGGVTQSSGGVTQSSGGVTRSSGGVTQSSGGVMWSSGGVTLSSRGVTQTSGGVTQSSGGVMQSLGGVTPSSGGVMRSSGGVTLSSGGVTLSSGGVTPSSGGVTPSSGGVTPSSGGVTPSSGGVTQSSGGVTPSSGGVMQSSGGVTPSSGGVMRSSGGVTPSSGGVTPSSGGVTPSSGGVMKLSTVSQSSVDMMQSPGSVSQSSGDVMQSPGSVPQSSGEVIESPGGMLQSPGEVMQSPGGVLQSPGGVPQSVGDTPHLPDVSHSSLRLLNLARDKPKTSPDEVQNHDTPMDISAPSSPNCSTNPQSEFSLEKVPWLSATDSLARKERSLPQLANPGPAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEADTRGSKRALRETRHTVKSSWTYNTTSAFTVKSAIRRLKEPKDQ", "length": 1129, "header": "tr|A0A9J7FSY5-1|A0A9J7FSY5_CRIGR Computationally mapped isoform of SUMO-interacting motif-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FT40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#A0A9J7FT40-1", "sequence": { "sequence": "MEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTQPQDGTQTSSGTGVMKAASDHLSPQPNLTRNTNQLVVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLTHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASQH", "length": 313, "header": "tr|A0A9J7FT40-1|A0A9J7FT40_CRIGR Computationally mapped isoform of SUMO-interacting motif-containing protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#A0A9J7FU81-1", "sequence": { "sequence": "MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRETRTRAKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPPNLQTCTSLSGKEVMETPGDIGSQSAAPRIVNNDPVDLDLLEENMFEGSRPPPSINQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNNSSSSNQRSSLPCPQQDMPCQPQGLLCPLQALSCPLRASPCPPRASSCPPQALSCPPQASSCPSQTVQCQLQALPHPPQEVPCPPQNVPCPQQNMPSTRQNISWHPQHPLYPPQDTLGLPQDVPGQPQNLSYPQDVPQLQDIPWSLQDMPLSLQDVLQSLQEMPPLLGDVPQSPEVMQVPGYVTQSPEVMQVPGGVIRSSGVAQLSGGVTQSSGIAQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGVTQSSGGVTQSSEGLIQSSGGVTQSSGGVMQSSGGVTQSSGVAQSSGGVTQSSGGVILSSGGVTQSSGDVTQSSGGVTQSSGGVTLSSGGVTQSSGGVTQSSGGVTRSSGGVTQSSGGVMWSSGGVTLSSRGVTQTSGGVTQSSGGVMQSLGGVTPSSGGVMRSSGGVTLSSGGVTLSSGGVTPSSGGVTPSSGGVTPSSGGVTPSSGGVTQSSGGVTPSSGGVMQSSGGVTPSSGGVMRSSGGVTPSSGGVTPSSGGVTPSSGGVMKLSTVSQSSVDMMQSPGSVSQSSGDVMQSPGSVPQSSGEVIESPGGMLQSPGEVMQSPGGVLQSPGGVPQSVGDTPHLPDVSHSSLRLLNLARDKPKTSPDEVQNHDTPMDISAPSSPNCSTNPQSEFSLEKVPWLSATDSLARKERSLPQLANPGPAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTQPQDGTQTSSGTGVMKAASDHLSPQPNLTRNTNQLVVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLTHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASQH", "length": 1374, "header": "tr|A0A9J7FU81-1|A0A9J7FU81_CRIGR Computationally mapped isoform of SUMO-interacting motif-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4/entry#A0A9J7JMI1-1", "sequence": { "sequence": "MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRETRTRAKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPPNLQTCTSLSGKEVMETPGDIGSQSAAPRIVNNDPVDLDLLEENMFEGSRPPPSINQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNNSSSSNQRSSLPCPQQDMPCQPQGLLCPLQALSCPLRASPCPPRASSCPPQALSCPPQASSCPSQTVQCQLQALPHPPQEVPCPPQNVPCPQQNMPSTRQNISWHPQHPLYPPQDTLGLPQDVPGQPQNLSYPQDVPQLQDIPWSLQDMPLSLQDVLQSLQEMPPLLGDVPQSPEVMQVPGYVTQSPEVMQVPGGVIRSSGVAQLSGGVTQSSGIAQSSGGLTQSSGVAQSSGGVTQSSGGVMWSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGLTQSSGGVTQSSGGVTQSSEGLIQSSGGVTQSSGGVMQSSGGVTQSSGVAQSSGGVTQSSGGVILSSGGVTQSSGDVTQSSGGVTQSSGGVTLSSGGVTQSSGGVTQSSGGVTRSSGGVTQSSGGVMWSSGGVTLSSRGVTQTSGGVTQSSGGVMQSLGGVTPSSGGVMRSSGGVTLSSGGVTLSSGGVTPSSGGVTPSSGGVTPSSGGVTPSSGGVTQSSGGVTPSSGGVMQSSGGVTPSSGGVMRSSGGVTPSSGGVTPSSGGVTPSSGGVMKLSTVSQSSVDMMQSPGSVSQSSGDVMQSPGSVPQSSGEVIESPGGMLQSPGEVMQSPGGVLQSPGGVPQSVGDTPHLPDVSHSSLRLLNLARDKPKTSPDEVQNHDTPMDISAPSSPNCSTNPQSEFSLEKVPWLSATDSLARKERSLPQLANPGPAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRIEEQPLPHAPPWMFFRLTALIQAPPDCTSKTGS", "length": 1170, "header": "tr|A0A9J7JMI1-1|A0A9J7JMI1_CRIGR Computationally mapped isoform of SUMO-interacting motif-containing protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Simc1 PE=4 SV=1 CANONICAL=A0A9J7FPS4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 698, "start_aa": "Thr", "end_pos": 698, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr698", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 705, "start_aa": "Thr", "end_pos": 705, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr705", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 712, "start_aa": "Thr", "end_pos": 712, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr712", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 719, "start_aa": "Thr", "end_pos": 719, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr719", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 733, "start_aa": "Thr", "end_pos": 733, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr733", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 747, "start_aa": "Thr", "end_pos": 747, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr747", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 761, "start_aa": "Thr", "end_pos": 761, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr761", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 768, "start_aa": "Thr", "end_pos": 768, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr768", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 775, "start_aa": "Thr", "end_pos": 775, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr775", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768496", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768496", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SUMO polymer binding", "id": "GO:0032184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032184", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1180, "end_pos": 1182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1274, "end_pos": 1276, 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQ20-1", "uniprot_ac": "A0A9J7FQ20", "uniprot_id": "A0A9J7FQ20_CRIGR", "mass": { "chemical_mass": 33194.0, "monoisotopic_mass": 33194.0 }, "refseq": { "ac": "XP_007605754", "name": "uncharacterized protein C9orf153 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605754" }, "gene_names": [ { "name": "CUNH9orf153", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20" } ] }, { "name": "CUNH9orf153", "type": "synonym", "evidence": [ { "id": "XP_007605754", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605754" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C9orf153 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7FQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C9orf153 homolog", "type": "synonym", "evidence": [ { "id": "XP_007605754", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605754" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617837.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_007605754.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007605754", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605754" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH9orf153", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQ20", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQ20", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772327", "url": "https://www.ncbi.nlm.nih.gov/gene/100772327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772327", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772327", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQ20", "url": "https://www.orthodb.org/?gene=A0A9J7FQ20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37353:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37353:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17673", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17673", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007605754", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605754", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPESEWRLHWAIGPSSWLPELYDSAKNFSKESKKSNFQKICRTSLEEARQLLDKNLNATSSCDTDKRKDKPLPAIQTREKEEKDEKKGEDEEHGEEEEKEKEEEEKEKPKSMADVLHHSLLKGFLFPLEQIAKTQKRLVQVGIPPPVHTFPYEFRADEVEVTQKKPTSRKRTSSATFHKLLLDSVTPDRLVYEDKLIRFFPPEPGKQFLDLVDLEWRYFKGLASWGRVRRGLSFIDIQFTSEKRFVESQGMSGMLSPPLVRKTLMYPQTECHKDGFYHFKWNT", "length": 283, "header": "tr|A0A9J7FQ20-1|A0A9J7FQ20_CRIGR Isoform 1 of Uncharacterized protein C9orf153 homolog OS=Cricetulus griseus OX=10029 GN=CUNH9orf153 PE=4 SV=1 CANONICAL=A0A9J7FQ20-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20/entry#A0A9J7FQ20-1", "sequence": { "sequence": "MPESEWRLHWAIGPSSWLPELYDSAKNFSKESKKSNFQKICRTSLEEARQLLDKNLNATSSCDTDKRKDKPLPAIQTREKEEKDEKKGEDEEHGEEEEKEKEEEEKEKPKSMADVLHHSLLKGFLFPLEQIAKTQKRLVQVGIPPPVHTFPYEFRADEVEVTQKKPTSRKRTSSATFHKLLLDSVTPDRLVYEDKLIRFFPPEPGKQFLDLVDLEWRYFKGLASWGRVRRGLSFIDIQFTSEKRFVESQGMSGMLSPPLVRKTLMYPQTECHKDGFYHFKWNT", "length": 283, "header": "tr|A0A9J7FQ20-1|A0A9J7FQ20_CRIGR Isoform 1 of Uncharacterized protein C9orf153 homolog OS=Cricetulus griseus OX=10029 GN=CUNH9orf153 PE=4 SV=1 CANONICAL=A0A9J7FQ20-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ20" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772327", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FS29-1", "uniprot_ac": "A0A9J7FS29", "uniprot_id": "A0A9J7FS29_CRIGR", "mass": { "chemical_mass": 65542.0, "monoisotopic_mass": 65542.0 }, "refseq": { "ac": "XP_027264873", "name": "PWWP domain-containing protein 2B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264873" }, "gene_names": [ { "name": "Pwwp2b", "type": "recommended", "evidence": [ { "id": "A0A9J7FS29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" } ] }, { "name": "Pwwp2b", "type": "synonym", "evidence": [ { "id": "XP_027264873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264873" } ] } ], "protein_names": [ { "name": "PWWP domain-containing protein 2B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027264873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264873" }, { "id": "A0A9J7FS29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264873" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pwwp2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29", "locus": {} } ], "crossref": [ { "id": "A0A9J7FS29", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FS29", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20153", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20153", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772421", "url": "https://www.ncbi.nlm.nih.gov/gene/100772421", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772421", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772421", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FS29", "url": "https://www.orthodb.org/?gene=A0A9J7FS29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23068:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23068:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264873", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPRAGCRLPVRVEQVVNGALVVTVSCGERSFAGILLDCTKKSGLFGLSPSTLLPLADNPSVINCHGQVPEAGTGEVMQLGMGPLPPHNKDQSPEKDQPPKTAGPEPPPPLIPPLPSGNLPPFPPYFEGAPFPHPLWLRNTYQQWVPQPPPRTIKRTRRRLSRNRDPGRLILSTIRLRPRQVLCEKCKSTVSPQEASPGPLTTARPRRRLGSGPDSEHRKPEEPEDSDSIAAATPRRSKREKREEDRVPGERVPRSPVIKISYSTPQGKGEVVKIPSRVHGSVEPFCPQKSLQNGSQDLEVARDVEPKGGGDRPPSGHSIPKLKLTRPVPPISDLPPPKIRLKPHRLRDGEHEPLYRAELVQEMNGCPRGPLASSPALFADGSTHGLEDLSSGSSGEDDDLKRFPQGKHGRDSLAFLVDCPGRRADCTSESVCSTDSLDELKSSGSEVTSPDTGDLSSGDSASVPSSSADTRQTVPPLTVRLHTQSVSQCVTEDGRTVAVGDVVWGKIHGFPWWPARVLDISLGQKEDGEPSWQEAKVSWFGSPTTSFLSISKLSPFSEFFKLRFNRKKKGMYRKAITEAANATQHVAPEIRELLTQFEM", "length": 600, "header": "tr|A0A9J7FS29-1|A0A9J7FS29_CRIGR Isoform 1 of PWWP domain-containing protein 2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2b PE=4 SV=1 CANONICAL=A0A9J7FS29-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29/entry#A0A9J7FQ22-1", "sequence": { "sequence": "MEPRAGCRLPVRVEQVVNGALVVTVSCGERSFAGILLDCTKKSGLFGLSPSTLLPLADNPSVINCHGQVPEAGTGEVMQLGMGPLPPHNKDQSPEKDQPPKTAGPEPPPPLIPPLPSGNLPPFPPYFEGAPFPHPLWLRNTYQQWVPQPPPRTIKRTRRRLSRNRDPGRLILSTIRLRPRQVLCEKCKSTVSPQEASPGPLTTARPRRRLGSGPDSEHRKPEEPEDSDSIAAATPRRSKREKREEDRVPGERVPRSPVIKISYSTPQGKGEVVKIPSRVHGSVEPFCPQKSLQNGSQDLEVARDVEPKGGGDRPPSGHSIPKLKLTRPVPPISDLPPPKIRLKPHRLRDGEHEPLYRAELVQEMNGCPRGPLASSPALFADGSTHGLEDLSSGSSGEDDDLKRFPQGKHGRDSLAFLVDCPGRRADCTSESVCSTDSLDELKSSGSEVTSPDTGDLSSGDSASVPSSSADTRQTVPPLTVRLHTQSVSQCVTEDGRTVAVGDVVWGRRQ", "length": 509, "header": "tr|A0A9J7FQ22-1|A0A9J7FS29_CRIGR Computationally mapped isoform of PWWP domain-containing protein 2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2b PE=4 SV=1 CANONICAL=A0A9J7FS29-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29/entry#A0A9J7FS29-1", "sequence": { "sequence": "MEPRAGCRLPVRVEQVVNGALVVTVSCGERSFAGILLDCTKKSGLFGLSPSTLLPLADNPSVINCHGQVPEAGTGEVMQLGMGPLPPHNKDQSPEKDQPPKTAGPEPPPPLIPPLPSGNLPPFPPYFEGAPFPHPLWLRNTYQQWVPQPPPRTIKRTRRRLSRNRDPGRLILSTIRLRPRQVLCEKCKSTVSPQEASPGPLTTARPRRRLGSGPDSEHRKPEEPEDSDSIAAATPRRSKREKREEDRVPGERVPRSPVIKISYSTPQGKGEVVKIPSRVHGSVEPFCPQKSLQNGSQDLEVARDVEPKGGGDRPPSGHSIPKLKLTRPVPPISDLPPPKIRLKPHRLRDGEHEPLYRAELVQEMNGCPRGPLASSPALFADGSTHGLEDLSSGSSGEDDDLKRFPQGKHGRDSLAFLVDCPGRRADCTSESVCSTDSLDELKSSGSEVTSPDTGDLSSGDSASVPSSSADTRQTVPPLTVRLHTQSVSQCVTEDGRTVAVGDVVWGKIHGFPWWPARVLDISLGQKEDGEPSWQEAKVSWFGSPTTSFLSISKLSPFSEFFKLRFNRKKKGMYRKAITEAANATQHVAPEIRELLTQFEM", "length": 600, "header": "tr|A0A9J7FS29-1|A0A9J7FS29_CRIGR Isoform 1 of PWWP domain-containing protein 2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2b PE=4 SV=1 CANONICAL=A0A9J7FS29-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ22" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ22" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772421", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772421", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" } ], "pmid": "" }, { "name": "positive regulation of transcription elongation by RNA polymerase II", "id": "GO:0032968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032968", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FS29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS29" }, { "id": "PS50812", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50812" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PWWP", "eco_id": "ECO_0000259", "start_pos": 500, "end_pos": 560, "start_aa": "Val", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 }, { "start_pos": 582, "end_pos": 584 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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spacing factor 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263494" }, "gene_names": [ { "name": "Rsf1", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26" } ] }, { "name": "Rsf1", "type": "synonym", "evidence": [ { "id": "XP_027263494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263494" } ] } ], "protein_names": [ { "name": "Remodeling and spacing factor 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FQ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26/entry#names_and_taxonomy" } ] }, { "name": "remodeling and spacing factor 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027263494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263494" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263494", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263494" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rsf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26", "locus": {} } ], "crossref": [ { "id": "cd15543", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15543", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769141", "url": "https://www.ncbi.nlm.nih.gov/gene/100769141", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769141", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769141", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQ26", "url": "https://www.orthodb.org/?gene=A0A9J7FQ26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14296:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14296:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263494", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263494", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATAAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDIGNGEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKEGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQEDSSRESPTVEDEETKKEEETPKQEGSKENEKTKGNAQPVDPIQRSVDNVLEEAAVKIEKEDEKELMKLPVIVKLEKTLPESEEKKIIREESDSFKENVKPIKGEKKECRVDSKDLKGSSERLGAQEPERVEFGGNIRSSQDITEKSSEETEKLKNDQQAKIPLKKREIKLSDDFDRPLCKSATPTKEFLKDEIKQEEETCKRVSTISSLSHEGKQLVNGEISDDKVAPNFKVEQMETQLCDTKDDGSAIPSKDGNNVMEGNGTECLNSVITGTKIHELEKEVSLEKGTDSSESALENHCQKGALEESEPPDVEMPLEPSDIATDLSLKHAVSATELCTSKVEEKTPKSKKENHAPGIECLEKVEKAKKTAVDKERLSPIPEEVVRSPLESEKPGHCEVAETSLPPEITDPSKKLASEKKGVECLHRGLSEGQSPENAIPEILKEDSESMKVDMASLDNAQASGLEDTSETKGSVQKNKFRYKLIPEGDSTSSENTEITSERQKEGIKLTIRISSRKKKPDCPPQIVDSESKEDKVGKEKEKISVGRTLRRSPRISRPTAKVAEIRDQKADKKKGEGEDGVEEEPTALQRTDKKEHLKKTEKDTNSKVSKVKPKGKVRWTGSRTRGRWKYSSNDESEGSDSEKSSAASEEEGGKESEEAVLPDDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERRKERLVYVGISIENIIPPQEPEFSEEQEEKKKDAKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNEDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSIRRGKEIRRVHKRRLSSSESEESYMSKNSEDDGLTKESKRSVRKRGRSTDEYSEADEDDEEEGKPSRKRLHRIETDEESCDNAHGDAEQPAHNQPRVLPSEQESSKKPYRIESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAIENLMGKPTEKSQTPKDNSTASASLAPNGTSGGQEVGAPEEDEDELLRVTDLVDYVCNSEQL", "length": 1434, "header": "tr|A0A9J7FQ26-1|A0A9J7FQ26_CRIGR Isoform 1 of Remodeling and spacing factor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rsf1 PE=4 SV=1 CANONICAL=A0A9J7FQ26-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ26/entry#A0A9J7FQ26-1", "sequence": { "sequence": 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"MGDPKEAGAEASPPGAAARGGLSLLSQAESEEPSSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESSSSDQTHDSEGASWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSDSPLNENSDESYSEEEEEMPDSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVKTDHAFQLIRKELVEECDQPKNNEATPAADSSPNLNQEEVIKLLSIFESRLSFLLLQSIKLLSSSKKKMSSNTEEDTVLQTNKQIYSQLLRATANRNSTLLERIDVIICLLEQLASGSSGSSGSAVA", "length": 1240, "header": "tr|A0A9J7FS23-1|A0A9J7FS23_CRIGR Isoform 1 of Erythroid differentiation-related factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Edrf1 PE=4 SV=1 CANONICAL=A0A9J7FS23-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23/entry#A0A9J7FQ49-1", "sequence": { "sequence": "MGDPKEAGAEASPPGAAARGGLSLLSQAESEEPSSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESSSSDQTHDSEGASWPAPFEMPSSVSEDPSASSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSDSPLNENSDESYSEEEEEMPDSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVKTDHAFQLIRKELVEECDQPKNNEATPAADSSPNLNQEEVIKLLSIFESRLSFLLLQSIKLLSSSKKKMSSNTEEDTVLQTNKQIYSQLLRATANRNSTLLERIDVIICLLEQLASGSSGSSGSAVA", "length": 1206, "header": "tr|A0A9J7FQ49-1|A0A9J7FS23_CRIGR Computationally mapped isoform of Erythroid differentiation-related factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Edrf1 PE=4 SV=1 CANONICAL=A0A9J7FS23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23/entry#A0A9J7FS23-1", "sequence": { "sequence": "MGDPKEAGAEASPPGAAARGGLSLLSQAESEEPSSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESSSSDQTHDSEGASWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSDSPLNENSDESYSEEEEEMPDSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVKTDHAFQLIRKELVEECDQPKNNEATPAADSSPNLNQEEVIKLLSIFESRLSFLLLQSIKLLSSSKKKMSSNTEEDTVLQTNKQIYSQLLRATANRNSTLLERIDVIICLLEQLASGSSGSSGSAVA", "length": 1240, "header": "tr|A0A9J7FS23-1|A0A9J7FS23_CRIGR Isoform 1 of Erythroid differentiation-related factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Edrf1 PE=4 SV=1 CANONICAL=A0A9J7FS23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23/entry#A0A9J7FS58-1", "sequence": { "sequence": "MGDPKEAGAEASPPGAAARGGLSLLSQAESEEPSSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESSSSDQTHDSEGASWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSDSPLNENSDESYSEEEEEMPDSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVKTDHAFQLIRKELVEECDQPKNNEATPAADSSPNLNQEEVIKLLSIFESRLSFLLLQSIKLLSSSKKKMSNTEEDTVLQTNKQIYSQLLRATANRNSTLLERIDVIICLLEQLASGSSGSSGSAVA", "length": 1239, "header": "tr|A0A9J7FS58-1|A0A9J7FS58_CRIGR Computationally mapped isoform of Erythroid differentiation-related factor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Edrf1 PE=4 SV=1 CANONICAL=A0A9J7FS23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23/entry#A0A9J7FTY7-1", "sequence": { "sequence": "MGDPKEAGAEASPPGAAARGGLSLLSQAESEEPSSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESSSSDQTHDSEGASWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSDSPLNENSDESYSEEEEEMPDSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTT", "length": 1094, "header": "tr|A0A9J7FTY7-1|A0A9J7FTY7_CRIGR Computationally mapped isoform of Erythroid differentiation-related factor 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Edrf1 PE=4 SV=1 CANONICAL=A0A9J7FS23-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1139, "start_aa": "Thr", "end_pos": 1139, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1139", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ49" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ49" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756396", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756396", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K4K6-1", "protein_name": "Erythroid differentiation regulatory factor 1", "gene_name": "Edrf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMGDPKEAGAEASPSGAAARGGLSLLSQTESEEPSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQQESASSDQTHESEGASWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASSSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEESSDSPLNENSDESYSEEEEEEEMADSDENGSYGTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPVVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMSSQNSNVGKLKTLSGALDIMVRTEHAFQLIRKELVEECDQPKNDEATPAADSSPNLNREEVIKLLSIFESRLSFLLLQSIKLMSSSKRKMSNTEDDAALQTNKQIYSQLLRATANRNSTLLERIEVVICLLEQLASGSSGSSGSAVP", "length": 1241 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0R4IK17-1", "protein_name": "Erythroid differentiation-related factor 1 isoform X1", "gene_name": "edrf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVLNMSSQDKTDTDLRQEEEHSSSEDNKQEGVICLGNNEVKSRAVVKYSAAPPPSSYALLQEKTDLKLPPANWLRENAQLGPAGTTILGSSRKSKPFSSFGMAFDFIDCIGDDVDVVSDSENIKKLLKIPYSKSHVSMAVHRVGSTLLLDELDIQELFMRSSQTNDWTWLKEFYQRLIDQKWQRKKKSKEHWNEKAILSKFLYYSINSDGTAVSVPSDTEQTGDEGCGAGTDGPSWPATFSSSTTDSEESALPKEEQVDTYALGHVSSVPKEQNLPTLFNEGENSQGLRNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLMCNVPELVMCFHVNGIVQKYEMIKTEDIPNLENSTFSTRVVKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEEAAEEKCQNPFTLPVAVLLYKVASNMMLKKSQNRKIYGTIRTLLLNCIKLLDEDRHPQIIASAHYMLAELFQLDDVSEDEGNGESLRGGGSEDSYSDEDEEDEEEDEDERCSFSTASEPQHDSKAVAVIKSVGELSVPEKYKSTHQIRPNFAYPVSQDKEEKCRLVLSYVLKGLKAVDSSIKKESDLPAADPSTPIPLKYEERSPNGAREVEQEIALLLDRVGPCNEELKVPTRSGMLPGTWQHRMKLQLFLKASKAYYVLSDAATNLLKYGRALRYIKLALQCHDAYCSISGGLHAQVLLFHCQCLSLCGDVQLMLAQNASNRAAYLEEYSYQTKDDQEILHCLHRESSCQAFSMATDLALDPEYQLIVSCKCYEAAHDLLTSGVLKDQAQEQLGQVLKRLGNIRNEMGVFYMNQAAAMQAEKEGGRKKDCTNAKKTRSKSIIFFSGPDQKNPENQATMRRSVCVAEQELWKKSFSCFEKGMQYFSAISDSVNTALLLCNIGRLMRICAQAHCVITSEQSRGEFSPEETLYYNKAIDYYQRALKALGCRESHSAVWDSVNWELSTTYFTLATLLQDYAPLSRKAQEQIEREVTETMMKSLRYCDLQTESARQPLYQYRAATIHHRLASMYHSCYRNQVGDESDRKQHKALAEQHYSKAVRLFVNLSDAPCELLRTLLERVAFAEFTMAGQNSSAVKLKTLTGALEIMCETRHAFRLIHKELLEQQENITKAEEKPEEVPEGSESSSSSELNTEEVLKLIGIFEPSFSFLLLQVIKLSSASKRKLSGKEEEQVKIYKSVYSRLLRAEKSDPLIQRVSLFLELLDQLNPPSGSEEPRSSS", "length": 1270 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XFQ7-1", "protein_name": "Erythroid differentiation regulatory factor 1", "gene_name": "EDRF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAELCGLEAAASLRGDAEEPKQGSVLFLGGNEVKSSAVVKYSSAPPQAAFAWLQEKTDLKLPPANWLRESAKLGPAGTTVLGNNKKSTPFSSFGMAYDFIDSIGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSSSKQHEESAVPGESDEAGRASWPAPFEMPSSLSEDPGASNQGSVPLEPSYIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEDIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMLKKNQNKKHYGTIRTLLLNCLKLLDNGRHPQIIASANYMLSELFQLDEPKKEDNTDFPINGNSDESYSEEEEEMPDSDENGSYSNSSDPPDDNKAVAIIKSVGELSVPEKYKSVHRIRPSCAFPVCHGAEERCRLVLSYVLEGLKSVDSSVKKESDLPAADPSTPIPLKYEDESTSGGPECLEKQMALFLDKMGSFQKDKHSSQSGMIPGSWQYKMKLQLILKSSKAYYVLSDAAMILQKYGRALRYIKLALQCHDTYCCLSASMLPEVLVFLCQCLTLCGDIQLMLAQNANNRAAYLEEYNYQTKEDQEILHSLHRESSCQVFAWATDLSTDLECQLSVSCKCYEAAYEILLFSNLKKQNPEQRVQVLKRMGNIRNEIGVFYMNQAAAVQTERVVSKNVSTTEQQLWKKSFSCFEKGIQNFESIDDATNAALLLCNTGRLMRICAQAHCATEGDFKREFSPEEALYYNKAIDYYLKALRSLGKREMHPAVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKYCDVDTVSPRQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAVRLFQLLKDAPCELLRVQLERVAFAEFQMASQNSSAGKLKTLFGALDIMAKTKCAFQLIRKDLAAESEQISKGESNAESLSPNESSTALNKEEVMKLLSIFESRMSFLLLQSIKLLTSTKKKTGGVNEEEVTLKTNKQVYSLLLRATANKSMTLLERIEVILNLLEQLSQNSEASNGGIQ", "length": 1229 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TFU8-1", "protein_name": "Erythroid differentiation regulatory factor 1", "gene_name": "EDRF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADSKEAGAEAPPAGAAARGGLSLLSQGESEEPSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSRKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSATEQQESSSSDQTNDSDGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGHVASAPKEQNLTPLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTVRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEESSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPNTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHKMKLQLILKSSKAYYVLSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNASNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQSERLVSKTVSTAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRICAQAHCGAGDEFKREFSPEEGLYYNKAVDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLASMYHSCLRNQVGDEQLRKQHRVLADLHYSKAGKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVRTKHAFQLIRKELVEEFEQPKSEETPPAADSSPSLNREEVTKLLSIFESRLSFLLLQSIKLLSSTKKKTSSILDEDIVLKTNKQVYSQLLRATANKNASLLERVDLLIHLLDQLACGRGSSAVVQ", "length": 1237 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SDM8-1", "protein_name": "Erythroid differentiation regulatory factor 1", "gene_name": "EDRF1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGDSKEAVAEAPPIGATARDGLSLLSQGETEEPSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSAAEQQESSSSDQTNDSDGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTVRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLVEPKKEESSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPNTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHKMKLQLILKSSKAYYVLSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFNDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQSERAVSKSVSTAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRICAQAHCGAAEDFKREFSPEEGLYYNKAVDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRMLADLHYSKAVKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVRTKHAFQLIRKELLEEFDQPKSEETPPAAESPPGLNREEVLKLLSIFESRLSFLLLQSVKLLSSTKKKTSSNLEEDVVLKTNKQIYSQLLRATANKNASLLERIDLLLHLLEQLAHGAAGGAVQ", "length": 1236 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3B7T1-1", "protein_name": "Erythroid differentiation-related factor 1", "gene_name": "EDRF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDAKEAGAEGPPAGAAARGGLSLLSQGESEESSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVSSTAEQQESSSSDQTNDSEGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGHVASAPKEQNLITLFNDGEHSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCLKLLDKSRHPQIIASANYMLSELFQLDEPKKEENSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDDSKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESSRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHKMKLQLILKSSKAYYVLSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFHYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQSERLVSKSVSAAEQQLWKKSFSCFEKGIHNFESIEDATNAALLLCNTGRLMRICAQAHCGAGDELKREFSPEEGLYYNKAIDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVRTEHAFQLIQKELIEEFGQPKSGDAAAAADASPSLNREEVMKLLSIFESRLSFLLLQSIKLLSSTKKKTSNNIEDDTILKTNKHIYSQLLRATANKTATLLERINVIVHLLGQLAAGSAASSNAVQ", "length": 1238 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6GQV7-1", "protein_name": "Erythroid differentiation-related factor 1", "gene_name": "Edrf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDPKEAGAEASPSGAAARGGLSLLSQADSEEPSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQEESSSSQQTHESEGAAWPAPFEMPSSVSEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEESSDSPLNENSDESYSEEEEEMADSDENGSYSTSSDPADDNKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADPSTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSIQKGSCSGQSGMTPGSWQHKMKLQLILKSSKAYYILSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQGERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQAHCGAEDEFKREFSPEEGLYYSKAVDYYLKALRSLGTRDMHPIVWDSVNWELSTTYFTMATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKHCDVDSATARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQHRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMSSQNSNVGKLKTLSGALDIMVRTEHAFQLIRKELVEECDQPKNDEATPAADSSPNLNREEVIKLLSIFESRLSFLLLQSIKLMSSSKRKMSSNAEEDIVLQTNKQIYSQLLRATANRNSTLLERIEVVICLLEQLASGSSRSSGSAVP", "length": 1239 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSP0-1", "protein_name": "Erythroid differentiation-related factor 1", "gene_name": "Dmel\\CG6511", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEDRNEEIEPCRSIGPHELDVVKSQAVIKLSPVPVPAHFKRLECNTNLNLPPLNWLTTSHSSHGLHQALYQSAGFASFRLGQMFPDCVGEVDVVSDAENIKQLLKLPYSAKSAISMVVHKVGNTLLLDEFDIQKYLLRKADDDWKWLRSFILEHVLTYGDTQHNYCLKERSREALQTKNLLSKFLYHSLKQTGDELDYDVANTPTQLTSRKQGLPITGPVLPEPKIEENVPDPKSSHAFNRNVVWTFEDIRMLIGTDMPIFGGPNRPCISLRLRDAAQPINVLTGIDYWLDNLMCNVPEVVMCYHLDGIVQKYEIIKTEDLPYLENSQFSPQVVRNVAQNILAFLKANATKAGHTYWLFKGRNDDVVKLYDLTTLCQSQASEKSDEDPPEQQVNPFTVPVGMLLYSVARNMKNTLPHISPKAAGNIRALLDNCIKLLPKEQYPQIVSSSHYILSDLHVPAGIDPKAPKFEEVDSDDQSLYDDDEEEDEEDYEDDVLDYSSEKSYQSSEQSGGKANVAVRHICDALRDFKSHAKKSKPAPLIATTAERCSFSLEHISAGLSCLQYFNGSQEEKLKESETNAKQEEKRRILHEEQNPNMAKPCSAIPLPYEQLKVSQQPTQVVKKPNSKTQAKRSKSKELTTTTKSKSANASNQQMSAKFNTQHFGSWNVHLKLLLLEKACLTFATLAEHYYESRRYGSTLRSIELACRCQQVLNKYMANVVSQYSCLLGRAGDCFFQISKNWESIEEYIQQFGELDPSMDFIGDELAQELEGEEEELPSLAPSNNVEQVMLHSCKCYEQALEHAQKAESNELLRRLGNVRNELGLKYMYWAQEEYSELMKKKESTKDAGNDQTEDSPTADPSEPLYVKLTVNSYDCLRRGIEAFTAVKDNVNLAFLYCNIGRFMRLRAHLIMPNESAITLESQKAFYNEAFSYYVKAKDCLDTRKANPELWDLVHWELSTATFTLAKQLQDHSAADKSSLVDASKEVLELLQKSLRLCDVEHPGARQVLYSFRSGLIHKRIASFHYSQLRSHGCCDFSQLPKSTLQLCKYHYEKATQILESLKEVGDLLVVQLERISLHEFLAELSTHTAQKIKQMQAALEICLQCHLIFAHVIDTNSGQVADDEFAGHLTLFESRLQNALKTLTKLTLAGKDPKQLSKLYKRMYMETLTGKHGLGAQQSSTACLKHLHMLLARLRAMCETQLAPRPAVRVF", "length": 1211 }, "evidence": [ { "id": "A0A9J7FS23", "url": "https://omabrowser.org/oma/group/A0A9J7FS23/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1210, "end_pos": 1212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FS23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23" }, { "id": "PF23788", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23788" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EDRF1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 561, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FS23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS23" }, { "id": "PF23723", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23723" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EDRF1 TPR repeats region", "eco_id": "ECO_0000259", "start_pos": 837, "end_pos": 1229, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1139 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1210, "end_pos": 1212 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQ65-1", "uniprot_ac": "A0A9J7FQ65", "uniprot_id": "A0A9J7FQ65_CRIGR", "mass": { "chemical_mass": 50039.0, "monoisotopic_mass": 50039.0 }, "refseq": { "ac": "XP_027264967", "name": "non-structural maintenance of chromosomes element 3 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264967" }, "gene_names": [ { "name": "LOC100763256", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ] }, { "name": "LOC100763256", "type": "synonym", "evidence": [ { "id": "XP_027264967", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264967" } ] } ], "protein_names": [ { "name": "Non-structural maintenance of chromosomes element 3 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FQ65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65/entry#names_and_taxonomy" } ] }, { "name": "non-structural maintenance of chromosomes element 3 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027264967", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264967" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 36% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264967", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264967" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763256", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQ65", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQ65", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763256", "url": "https://www.ncbi.nlm.nih.gov/gene/100763256", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763256", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763256", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQ65", "url": "https://www.orthodb.org/?gene=A0A9J7FQ65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF91", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF91", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264967", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264967", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSGACWLEGGGARNGCVCRVHPRPCHVTLGRWPILDRLSGATYKLAQDRQASKPIAARVVELVPSQKEQLQAIGTTQGGGGECLCQLIGSLRGPLIQALGTQAVASSLQEKGERHNKTQTVKYNQEAWFVVIVPNALDPAPPPRPTPSRALGAKDPQSPGAAGYRSVSPPPGHMLQKPRSRSRPGAQPESGTSWEVPSRSGHPDAKQDTTGTLSSSSRLVQATPAPELRTQKQLELKVAELVQFLLIKDQRKIPIKRTGILKHVIRDYKDIFPDLLKLAAERLHYVFGYKLVELEPKSNAYILINALEPVEEDSEVRGNQGAPTTGLLMIILGLIFMNGHSIPETEVWDFLRRLGVYPTKKHSVFGDPKKLITEDFVRQRYLESRRIPHTDPVDCELQWGPRANLETSKMKVLKFVAKVHNQDPKVWPTQYCEALADEQSRVGLKPSGSAPTS", "length": 454, "header": "tr|A0A9J7FQ65-1|A0A9J7FQ65_CRIGR Isoform 1 of Non-structural maintenance of chromosomes element 3 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763256 PE=4 SV=1 CANONICAL=A0A9J7FQ65-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65/entry#A0A9J7FQ65-1", "sequence": { "sequence": "MCSGACWLEGGGARNGCVCRVHPRPCHVTLGRWPILDRLSGATYKLAQDRQASKPIAARVVELVPSQKEQLQAIGTTQGGGGECLCQLIGSLRGPLIQALGTQAVASSLQEKGERHNKTQTVKYNQEAWFVVIVPNALDPAPPPRPTPSRALGAKDPQSPGAAGYRSVSPPPGHMLQKPRSRSRPGAQPESGTSWEVPSRSGHPDAKQDTTGTLSSSSRLVQATPAPELRTQKQLELKVAELVQFLLIKDQRKIPIKRTGILKHVIRDYKDIFPDLLKLAAERLHYVFGYKLVELEPKSNAYILINALEPVEEDSEVRGNQGAPTTGLLMIILGLIFMNGHSIPETEVWDFLRRLGVYPTKKHSVFGDPKKLITEDFVRQRYLESRRIPHTDPVDCELQWGPRANLETSKMKVLKFVAKVHNQDPKVWPTQYCEALADEQSRVGLKPSGSAPTS", "length": 454, "header": "tr|A0A9J7FQ65-1|A0A9J7FQ65_CRIGR Isoform 1 of Non-structural maintenance of chromosomes element 3 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763256 PE=4 SV=1 CANONICAL=A0A9J7FQ65-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 147, "start_aa": "Thr", "end_pos": 147, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr147", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763256", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763256", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FQ65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ65" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 235, "end_pos": 435, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 147 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQ67-1", "uniprot_ac": "A0A9J7FQ67", "uniprot_id": "A0A9J7FQ67_CRIGR", "mass": { "chemical_mass": 57271.0, "monoisotopic_mass": 57271.0 }, "refseq": { "ac": "XP_027263722", "name": "tripartite motif-containing protein 30A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263722" }, "gene_names": [ { "name": "LOC100762680", "type": "recommended", "evidence": [ { "id": "A0A9J7FQ67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67" } ] }, { "name": "LOC100762680", "type": "synonym", "evidence": [ { "id": "XP_027263722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263722" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 30A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FQ67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 30A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027263722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263722" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263722" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQ67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762680", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQ67", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQ67", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15822", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15822", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16591", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16591", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762680", "url": "https://www.ncbi.nlm.nih.gov/gene/100762680", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762680", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQ67", "url": "https://www.orthodb.org/?gene=A0A9J7FQ67", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ67-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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:: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263728", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263728" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQF4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771630", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQF4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15822", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15822", "database": "CDD", "categories": [ "Protein 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263746", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263746" } ] }, { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770321", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQG5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQG5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15227", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15227", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770321", "url": "https://www.ncbi.nlm.nih.gov/gene/100770321", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770321", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770321", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQG5", "url": "https://www.orthodb.org/?gene=A0A9J7FQG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263746", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263746", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANSTLVTEFLLEVFAETWELRLLLSVLFLLVYLGSLLGNFTIIIATTVDPTLNTPMYFFLRNLSILDMCYVSVTVPNACVNSLTDHRNISMTGCAAQIFLVFFCACVEILFLAVMAQDRYVAICKPLLYPMIMSHQVCIQMTLASLFSCLVIAGMHTIKTFQLSFCHSNMVPQFFCDIPSLLRLSCSDTFINKLLILLTAIGVSGSCFIFIAISYVRILSTVMRVPVKGERGKAFSTCVPHIIVVSLFLSSGAYVYLRTPVTSEVVQEMTLSVLYTIVPPFLNPIIYSLRNKQIKEAVRKVILRIFFRV", "length": 310, "header": "tr|A0A9J7FQG5-1|A0A9J7FQG5_CRIGR Isoform 1 of Olfactory receptor 14C36 OS=Cricetulus griseus OX=10029 GN=LOC100770321 PE=3 SV=1 CANONICAL=A0A9J7FQG5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5/entry#A0A9J7FQG5-1", "sequence": { "sequence": "MANSTLVTEFLLEVFAETWELRLLLSVLFLLVYLGSLLGNFTIIIATTVDPTLNTPMYFFLRNLSILDMCYVSVTVPNACVNSLTDHRNISMTGCAAQIFLVFFCACVEILFLAVMAQDRYVAICKPLLYPMIMSHQVCIQMTLASLFSCLVIAGMHTIKTFQLSFCHSNMVPQFFCDIPSLLRLSCSDTFINKLLILLTAIGVSGSCFIFIAISYVRILSTVMRVPVKGERGKAFSTCVPHIIVVSLFLSSGAYVYLRTPVTSEVVQEMTLSVLYTIVPPFLNPIIYSLRNKQIKEAVRKVILRIFFRV", "length": 310, "header": "tr|A0A9J7FQG5-1|A0A9J7FQG5_CRIGR Isoform 1 of Olfactory receptor 14C36 OS=Cricetulus griseus OX=10029 GN=LOC100770321 PE=3 SV=1 CANONICAL=A0A9J7FQG5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770321", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770321", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FQG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FQK0-1", "uniprot_ac": "A0A9J7FQK0", "uniprot_id": "A0A9J7FQK0_CRIGR", "mass": { "chemical_mass": 86821.0, "monoisotopic_mass": 86821.0 }, "refseq": { "ac": "XP_027265911", "name": "ras association domain-containing protein 10 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265911" }, "gene_names": [ { "name": "Rassf10", "type": "recommended", "evidence": [ { "id": "A0A9J7FQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0" } ] }, { "name": "Rassf10", "type": "synonym", "evidence": [ { "id": "XP_027265911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265911" } ] } ], "protein_names": [ { "name": "Ras association domain-containing protein 10 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0/entry#names_and_taxonomy" } ] }, { "name": "ras association domain-containing protein 10 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027265911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265911" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027265911.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265911" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rassf10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FQK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FQK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16132", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16132", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763598", "url": "https://www.ncbi.nlm.nih.gov/gene/100763598", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763598", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763598", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQK0", "url": "https://www.orthodb.org/?gene=A0A9J7FQK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15286:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15286:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265911", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVRTHISELHPQTIAYLSAHDPAVVEEDWKAWRPRLQTGAGQVVDHNVPTKNCWVPQFPRLCKVQCTEGTVLKDQDHAHLGALGKEQVRLRCFQPGLHARQGGAEGVAELMPGEVRTPRLVAERSWSPSLLEWRTGQQPEPRADPAAGLGGASLGDAPAVLSAAAQGAGGGKRWSQVGRSKTQRPRAPRAEPESLEPEPRHAASGEPAVQAENSRCCGSRRLISVHSGGERLVTPGTGSRILLQFGSCQVAGAGPAAPVAPSRTRPSRPSCTMDPSEKKISVWICQEEKLVSGLSRRTTCSDVVRVLLEDGCRRRRRQRRGQRRGMEEDPSSQLELPEPPDENDEDDEDAMPQGMLCGPPHCYCIVEKWRGFERILPNKTRILRLWTAWGEEQENVRFVLVRSEASLPNAGPRSAEARVVLSRERPCLARGAPARPSLALTQEKQRRVVRKAFRKLAKLNRRRQQQPPSPCSSTSSSTASSCSSPPWTHESASVERMETLVHLVLSQDHTIRQQVQRLRELDREIDRYEAKVHLDRMRRHGVNYVQDTYLVGADIDLDGPTPGEEPEEATLAEKGTEAVAALDLDGEAQAAALEELAQRCDDLVRLQEERAQQEELLERLSSEIQEELNQRWMKRRSEELASREESPEPYGGPDGELLLEQERVRTQLSTSLYIGLRLSTDLEAVKADLDYSQQQRDIKERELQGLLQTLRTLEQTVVNDGALGSGGPSREPQPQTCAEMWVDQARGLAKSCPGNDEDSDTGLSSMHSQDSDSVPPVCESLV", "length": 783, "header": "tr|A0A9J7FQK0-1|A0A9J7FQK0_CRIGR Isoform 1 of Ras association domain-containing protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rassf10 PE=4 SV=1 CANONICAL=A0A9J7FQK0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQK0/entry#A0A9J7FQK0-1", "sequence": { "sequence": "MEVRTHISELHPQTIAYLSAHDPAVVEEDWKAWRPRLQTGAGQVVDHNVPTKNCWVPQFPRLCKVQCTEGTVLKDQDHAHLGALGKEQVRLRCFQPGLHARQGGAEGVAELMPGEVRTPRLVAERSWSPSLLEWRTGQQPEPRADPAAGLGGASLGDAPAVLSAAAQGAGGGKRWSQVGRSKTQRPRAPRAEPESLEPEPRHAASGEPAVQAENSRCCGSRRLISVHSGGERLVTPGTGSRILLQFGSCQVAGAGPAAPVAPSRTRPSRPSCTMDPSEKKISVWICQEEKLVSGLSRRTTCSDVVRVLLEDGCRRRRRQRRGQRRGMEEDPSSQLELPEPPDENDEDDEDAMPQGMLCGPPHCYCIVEKWRGFERILPNKTRILRLWTAWGEEQENVRFVLVRSEASLPNAGPRSAEARVVLSRERPCLARGAPARPSLALTQEKQRRVVRKAFRKLAKLNRRRQQQPPSPCSSTSSSTASSCSSPPWTHESASVERMETLVHLVLSQDHTIRQQVQRLRELDREIDRYEAKVHLDRMRRHGVNYVQDTYLVGADIDLDGPTPGEEPEEATLAEKGTEAVAALDLDGEAQAAALEELAQRCDDLVRLQEERAQQEELLERLSSEIQEELNQRWMKRRSEELASREESPEPYGGPDGELLLEQERVRTQLSTSLYIGLRLSTDLEAVKADLDYSQQQRDIKERELQGLLQTLRTLEQTVVNDGALGSGGPSREPQPQTCAEMWVDQARGLAKSCPGNDEDSDTGLSSMHSQDSDSVPPVCESLV", "length": 783, "header": "tr|A0A9J7FQK0-1|A0A9J7FQK0_CRIGR Isoform 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"https://www.ncbi.nlm.nih.gov/protein/XP_016833082", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LED5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LED5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LED5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LED5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2456, "header": "tr|A0A9J7FTM8-1|A0A9J7FTM8_CRIGR Isoform 1 of Centrosomal protein of 295 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LED5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A8C2LED5-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYESSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2436, "header": "tr|A0A8C2LED5-1|A0A8C2LED5_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X10 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FR50-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYESSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2455, "header": "tr|A0A9J7FR50-1|A0A9J7FTM8_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FSE2-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2408, "header": "tr|A0A9J7FSE2-1|A0A9J7FSE2_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X7 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FTM8-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2456, "header": "tr|A0A9J7FTM8-1|A0A9J7FTM8_CRIGR Isoform 1 of Centrosomal protein of 295 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FU73-1", "sequence": { "sequence": "MRQETTVPNAYPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2427, "header": "tr|A0A9J7FU73-1|A0A9J7FU73_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X5 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FUD6-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTDYINSCLR", "length": 2413, "header": "tr|A0A9J7FUD6-1|A0A9J7FUD6_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X6 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FVJ5-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2455, "header": "tr|A0A9J7FVJ5-1|A0A9J7FVJ5_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X3 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7FWC8-1", "sequence": { "sequence": "MKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2161, "header": "tr|A0A9J7FWC8-1|A0A9J7FWC8_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X9 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7GTY7-1", "sequence": { "sequence": "MGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2205, "header": "tr|A0A9J7GTY7-1|A0A9J7GTY7_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X8 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JN54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8/entry#A0A9J7JN54-1", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2437, "header": "tr|A0A9J7JN54-1|A0A9J7JN54_CRIGR Computationally mapped isoform of Centrosomal protein of 295 kDa isoform X4 OS=Cricetulus griseus OX=10029 GN=Cep295 PE=4 SV=1 CANONICAL=A0A9J7FTM8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FR50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FR50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755683", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755683", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4L9P8-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "Cep295", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRKVMNGKLRLSPNEEAFILKEDYERRRKLRLLQVREQERGIAFQIREDIKQRRNQQVSHLAEELRAEWEEAQSQKIQNLEKLYLASLRHMGDGHQQAKENEPDLDALSRRAAERKTKAEARHKEALKAQKKQKEMLMKQKTRHIKARKEAVLVEKERSAKMARLPPPVPSPFENIDINRIPSLKTNRSTYHHISAFVSRQMGTKQPDAHLAAEEEARRVERLRKQAAQERMEQSERAHARGSQAMKKIHLAQNQERLMEELKQLQREDLACKRQTAAQMPSQLLELPYRRSEMKEDWQRELEFAFEDVYSADRKVKGNLILHLKPEPLPTMSDQLQDEELDLSMEQENEVPLATKTQQIPSRILLKRLLNKIRNQKSLWTIKSFSEDDNQVTASIISEIERKVPSTDSGTITTGETAVSFEQEQVMGSDRLMIESGPPSSEDKPLCYKSVTGKEQAMGVSPPATTVAQSSVLLHPQEEAARLRMSARHKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFQAQLEETRKQADHLEVRPAPVSHAMISDEERHRQMIRNYQYQLLQQNRLHKQTVETARKRLLEYQTVLKERCPSMSARSLIPDSVVSEPPQQAQKPAVASDYWDPSQRPKLSPSKYQPVQPSQIPALDQNHIQVPRQGHIPQRQGETARAKQSVESQERQWQFSQVETQQRDYEFIFKDSHSLSRTSSYVRPQTLQAAGEVSKPLRAIICQTSDSQQISSEDSENISSKPTEPSSSLPLMPECSSSSLSVKLESETIQKAFTTVNRSVISQMHGQPLSSSETGTTQQGDIRFLQGQLELQKKVLQERQEAQEKLLSCTQKELEEQTGIPVFFPSPVGNMFSSLPSASAESGNIQTSSTKSDATVSSDSMDNPYSQPISLRQTNLEFLQEQFSVEKDNLQARREAQEVSFTHTQSKLDKIVRSEQTGSSWPQLVALESFSSLTSADTQSRKIQKPPLPTNKKGLLPSQSEILSSQDGSSGFLQQTLPLQNTLKLLQEQLTIQRGMIQPRLNAQETLLLHKERCSVDSKAGPVNSLSSAVAQHSEAGPQSLQELYSSKKENTVLSSHLITPEVQEESHGSPQHSLPRQEHFASLQEQAHIQRVILGARKQIQEFAHKQNEFKKGLYSQQTGALSSPSQGTGWEISQESLSVRSDSTDPLSHFKIPGFQERLVRALQPTFPLRDNLQEHQEWVDPEKESFQFSPQTQENRSSQQTGFSSFTPSLRQPSCVSLPSVDSGITQHPLSTERDSKVTSSHLQIPELQHRLLKISQLIQPQQDSLKALQEQLATSRTIIHSRQEALEETLREWKEKIFPEQVGPFSPLMTQHSFASFPVSDIERAQELCSTNSEGAISSGYSEMLELPDRALGLSCTALPQQGNLTVHPGHLHAQTNSFHSTEKAQEKLVFPRPCKLEEISAEHSIQPPHDDLQALQQQLDVHREAIRSCQDIQEELLLQRLNKLEQRVSSKQISSSPLLSQVALPIANSEGTLQSSPAKNDDTEMLRSHSEYLNFSQPLQDNVTEQLDLEVVFHKELLLHKQKSQTKSESPEHAAPFNDAVIPRLQDRLLSYFQPALTQQDSMSPQKQLNLQREALYSRQKAQEELLVQRQTALQQQVQKHRETLKGFSNVSQTRAASGENDLEMQKTEQLTGWFPHIQGWPWGDSSQGSSSGDQPGAAAVHAEHSGESLGKELSGRASKPPVSKVKCVFDLNQHELSTIQEVESPTSGRTSMPGKAEFYRDRDPLRVSVSREQSYLGSPVAHDPFGCHQPSVQENSKSHDTAKAVKVKKSDIEDHALLSHAISEEEEEEEACTNLSPLMKPDDEVETQEISQELLSSMTVSTGSFLSYEITDLSLTDPESFSEQTEHQEQESSSKEEETGSLSCAVPSTQVTYQQQHSLGAHNSLLPTEEENASDQTHVHQIIDKDINEANLIPDKRDFQVPAVDLDFPELEHLFPHLHRQLFKPLEPHLDLDLSSPGTSQEDRDFYQQNSESSSEKHVKALSTSTLCFTALTAGSHSPNSRLNQQLDVNLAHATTEGSEQSFQQLLPEFSSQESQHTDLPSIYSIEARGTSQSMENQNYSEILQNKKKSIYFQPSTENLSPACSSSDTTLFDQLHPQHSTPCGSVSSEGSVKQLEGREEMLGFEELSRRAVPMSQRLTEDENVVLPINPYVGTVEMETSIQGSNSLSIQNEKPIQNVIKTETTKAVRNVCQLAQEEHMLKSESCPFRRPIPVWETETGYGIMEEPDLTLLSTSDISITDTDLANLTIEDNEAQCSQAGAVQPSSSVETTFCGAASEPWADQPTVASSAIPGSLGEAFMKRKKTFMERSYQRQREIWNKTPLPQAKVSKEKLSTSSSLSHLKEAVSGDETAKRNRSQCI", "length": 2395 }, "evidence": [ { "id": "A0A9J7FTM8", "url": "https://omabrowser.org/oma/group/A0A9J7FTM8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1STL9-1", "protein_name": "Centrosomal protein 295", "gene_name": "CEP295", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGGITNSENKELGKTIFGKFENMGEGHQQAKENEPDLNALAHRAAERKKKAEVRHREALKVQKNQKEMLMKQKTWHIKARKEALLVEKERSAKITSLPPPPPSLFENMEVTRQPNVKTNSSTYHHLRTFVNREVDTKQPDPHLAAEEEAKRLQELQKQAAEERMEQSEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVARMPPHLVELPYKRNEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPVVTDQIQDEELDLSMEQGSSAETENIPVTKAETICSSEADVPVAMKTHQIPSKILFKKLLNKIRSQKSLWTIKSMSEEESEMITTVSETESKALTIETGATVSEDGTLSSGQEQVVESDMLTVDSGPLTSEDKPLTSNTDSEKEQEVNETRPITAVAQSSVLLHPHEEAARIRMAARQRQIMEIEEQKQKQLELLEKIEQQKLRLETDCFRAQLEEEKRKKTQQPGVGTVPASCTISSDEDNHRQMIRNYQQQLLQQNRIHKQSVETARKRLLEYQTMLKGKYPCVSAAPWIPGSVTSAPPQKAEPPAVASEHEDQAWRPTLSPNKHQPMQPVQISKLEPDFQVLRQHCFPRRQAETTETITSDVLAKQALESREQPKQLSQTETQQRDSKLVPEDSHTLTRAFAYDKPLILQEDKERAEIPKATTFQTLDSQPVFSESKERTASKVIEPSSFLPLVAEHSFSSLPTKVESGKIQEPFSTVSKNTVSVSHSVIGQMQDKSLQCLENITAQQGKLKALQEQLDLQKEVLRSRQEAQEQLLLCKQKELEGQTGLSIFLPLLPLDSFVSLPSTKAELGRFQESSPTKKETAASSGHPVVPQLQDGLNFKFPQERLNIQTDSLQGRREAQEVSCVHKQSELGGRVWAEQTESPSPPSQLTQHTFASLPSAGTQSGKILEQYSSKSEKECLSGPSEIPKSQDGSSSFLQQFLPLRDSLKLLQEQLTAQRDALQARHEAQAELLFHQQRDLGDTKSAQLSSSFPPMVAHHSVASQASARTEPRRVENFCFSEESVIPSSHPVIPTFQTESPSFAQLSLPQRENLTALQDQSHIQRVILGARQETQEFVHKESELEKNSFSEQTGPSISLSQGTESERFREFMSIKSDRAVPLSHWKIPRFQERHLGLSQHIQPRQDNLEGCQEWLDTEDEAHHFSQKTQGDVSSEHTGPSFLSQLGQLSLTLLPSAESLPTQELLSAESGSRIPSSHFQIPQLRDRLLKISQLIQPQQDNLRALQEQLATQREAIMQARQEAREELHVHKQSEWKGRLPPEQAGPSSSLSLVIQHPFAPLPLHEAGRIREPCSAKSDNTVSSSHSDRPRLLDRLLGLPQPVEPQQDHPATFQQEHLAAHTDSLPCSKKTQKELVLPRQYKFEEESSEPFIQPHHGDLKELQQQLDLQTKAAQSRQDLREELLLQRLSKLEKRVSSEQASASSSLSQVAVSVADSEKIQKAFLTGSDNTLPSSHPEIPGSQDRLLSLAQASLPWQDHVSAQLGLRREELHVNEKAQEELLLNKQTKLTEGESSEHTVPSLFPPMGKEHSFSPLPFAEVKPKNICEFYSAKNEHATSSSASMSPRLQDRFLSFSQPTLAQQDSLGLHKQLELQREVLHNSQKAQEELLVQRQIALQQQIQKHQETLKHFFKDSQTSKPTVENDFESQKHRECFPHLQDLAKDIQENIDPTVRSPCDNQLLSEDSNAKQSGEHLDRELGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPASGRISILGKPEFHQDRDPLRVSISREQSFLGGPLDHGPFGHLHPVAQENICGDDSDKAVKVKEAVVENHAVFSHAVEEEERTYQSPNVKPDTKTDTQEIYHEPLSSITISTGSFLSYENTDLSLTDPESFSEHVDYRKQESPTDKEEETNMLSSVVPSTQVIYQRQDSQDIHKPLLPAVETFTSGQIHIQQMMDKYINEANLKTEKTDLRVDFDFPELEHTFPNLHRQLFKPLEPHPDFDFSSSFSGISQDSKDFYQKSDSPCESLRATPSPKSTAAFRALRRTSLHSSLNNSPNQQLDPNLPHAAAQSFAMENIEGSGQSFQQLVPECSSQEGSQHANLPSIFSIEARDSSQGMENQNYSSKQNEILQNKQKSVHFQLSVGNLQSSVFSSSGDAHVFHHLNLQHSTPCGSTSSECSIKDQLEGRIERLGFEELSQREADAMLRGQGFIKDDKNETCGVLNIDPHVEETDSQLCVRTAEMGTSIQTPYAVTVENEKCLKNSTKAGTPGTTGNLSQLAQSELFVSSGSFSLQSSVPVWETESGFGIMEEPELTMISTSDISTAEMGFADLTLEEKENEAKNCFQVSEFLPLPSERENSDHPAASEHSVKKLTTSTETLSKFTATPGSLQDAFIKRKKSFIERSSQRQKEIKNKIRVSVNSQTKIVKEKPTGSFVSHLKGVTKVRMSFPEDRKTAQTHMHQRALRLYHQLPEVKHQKEEKAKQDAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2522 }, "evidence": [ { "id": "A0A9J7FTM8", "url": "https://omabrowser.org/oma/group/A0A9J7FTM8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8BQ48-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "Cep295", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRKGMNTKLRLSPSEEAFILKEDYERRRKLRLLQVREQERGIAFQIREGIKQRRSQQVSHLAEELRAKWEEAQSQKIQNLEKLYLASLRHMGDGHRQAKENEPDLDALSRRAAERKRKAEVRHKEALKVQKNQKEMLMKQKTRHIKARKEAVLVEKQRSAKMARLPPPVPSPFENIDVNRIPSLKTNSSTYHHISTFVSRQMGTKQPDAHLAAEEEARRVERLRKQAAQERVKQFERAHVRGSQAMKKIHLAQNQERLMEELKQLQKEDLARRRQTVAQMPPQMLELPYRRSEMKEDRQRELEFAFEDMYNADRKVKGNLILHLKPEPLPTISDQLQDEELDLSMEQENQVPLAAKIQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDEGEVTSSIIEIESKVPSVDSGAIITEERTAASFEQEQVTDSDRLTIESGPLSSEDKPLYYKAGTGREQAMAVSPPATAVAQSSVLLHPQEEAVRIRMSLRRKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFRAQLEEQRKQADQPEVCCAPMSHAMISDEDSHRQMIRNYQHQLLQQNRLHKETVETARKRLLEYQTVLKERSPSLSASALVPDSVVSGPPQQSYKPAAASDSWDPSQRLKLSPSKYQPVQPSQIPALEQSHIQVPRHGHITQRQGKMAVSEMLGKQPVESQERQWQFSQVETHQGDYEFVLKDSHSLSRTLSYVRPQTLQDAREVSKPPRVIICQSLDSQQISSEDSENISSKPSEPSPFLPLVPERPFTSLPVKFHSGTIHKPFTTINQSVISQMHDQPLSSSETITAQQGDLRFLQEQLELQKKVLQARQEAREKLLLCTQKELGQQTGLPVFLPSPAGNIFSSLPSASAESGNFQTSSTKSDATVSSDNMDRLWDSSQPISSQQTHLEFLQEQSSVETDNLQARREAQEVLFAHTQNTLEKIVRSEQAGSSLPHQVAQQSFSSLTLADTQSKKIQKQPLPANKKGLLPSQSEVSKAQDGSSGFLQQTLPLQNTLKLLQEQLTRQRSMIPPRRDGQETLLLYKESCSEDSEAGPVESLSSVVVQHADASRAVSEVPKRLQDVYSSEEENRVLSSHLITHGFPQHSLQRQEHFTPLQEETHIQRLILGARKNNEEFAPKQNELEKGLCSQQTDALSSPSQVTDWGTSRGSVSVRSDRTDPLRHFKIPAFRERLVRVSQHTFPLQDNLQEHQEWVDTEKESFQSSPLTPENPSSQQTGFSSFKASLRLPSCVSLPSADSGITQHPLSTESDSKVKSSHLQIPELQHRLSKISQLIPPQQDSLKALQEQLATQREAIIHSRQEAHEETLREWKEKIFPEQVGPFSPLIPQHSLASFPVSDTERAQELCSTNSDTISSGYPEMLELPDRTLGLSHTALPQQNNLTAHPEHLHAQTNFFHSTEKAQEGLVFPRPCQFEEMSAEHFIQPQHDDLKALQQQLDMQREAIRSGQEMQEKMLLQRLNKLEQRISSKQISSSLFSSQVALPIANSDGTLQSFPTKSNETELLGSQDEYLSFSQPRLPLQNNMTEQLDLEKVFHKELLLHKQKSQNKSESSEHSLPPLFLSKEIEHPFISLPFAESKSKSICELYLSDKKHAAPNDAVIPRLQDRLLSCSQPVLTQQDNMSLQKQLNLQRETLHSRQKAQEELLVQRQTSLQQQIQRHRETLKNFFNVSQARNPTDENDLEMQKREQLGGWFPHTQGLTWGDAGQGSANGEQPRADVHAEHNGESLAKELSGRASKPPVSKVKCVLDLNQHELSTIQEVESPASGRISMPGKAEFYQDRDPLRVSVSREQSFLESPLAHDPFGCHQPPAQENSKSHDDNAEAVKVKKSDVEDHAVLSHAVSKEEACTNLGPLGKPDDEAETQEISQEPLSSVTVSTGSFLSYEITDLSLTDPESFSEQTEHLEQESTNKQEETDPLSIAVPSVIYQQQHSLGAHNSLLPMEEESTSDHTHVQQIMDNDVNEANLIPDKRDFQVPAVDLDFRELEHIFPHLHRQLFKPLEPHLDFDLSSPGTSQEDSDFYQSSESSSEKHVKALSTGTICFPALTAKSHSPNPRLNQLDINLAHATTEGSEQSFQQLRPEFSSQESQHADLPSIYSIEARGPSQRMENQNYSEMLQNKKKSLSLQPSTEDLTPACSSSDTALFDQLHLQHSTPCASVSSECSVKLLESREEVLGFEELSRRAVTMSQRLTEDENVVLPINPHVGRVEKEASVQGSNPLSIQNEKPIQNFIETDTTEAVGNVCQLAQAEHILKSCPFRSPIPIWETDTGYGIMEEPDLTLVSNSDISITETDLANLTLEDREDNEAQFFQAGVVLPTSSMETSVCGAVSEPYVDQPTVAPSATSGSLQEAFMTRQTLTERSYQRQREIWNKTRLPQTKVSKEKLPTGCTGS", "length": 2412 }, "evidence": [ { "id": "A0A9J7FTM8", "url": "https://omabrowser.org/oma/group/A0A9J7FTM8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0D2-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "CEP295", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRKVVNTHKLRLSPNEEAFILKEDYERRRKLRLLQVREQERDIALQIREDIKQRRNQQFTRLAEELRAEWEESQTQKIQNLEKLYLASLRSMGEGHRQAKENEPDLDALAQRAAERKRKADLRHKEALKVQKNQKEILLKQKTWHIKARKEALLVEKERSAKITSLPPPPPTLFENIEVKRISAVKTNSSTYHHLHTFVNRETDTKRPDARLAAEEEAKRLEELQKQAAQERMERFEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVAQMPPQLVELPYKRSEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPTVTNQIQDEELDLSMEQENLGAAEDLPVTEAEICSSETDVPLVMKTQQIPSKVLFKKLLNKIRSQKSLWTIKSMSEDESEMITTVSEIESKAPTVESGTIASKERTLSSGQEQVVESDTLTIESGPLASEDKPLSCGTNSGKEQEINETLPITTVAQSSVLLHPQEAAARIRMSARQKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFRAQLEEEKRKKTQPTGVGIAPASCPVISDEDSHRQMIRNYQHQLLQQNRLHRQSVETARKQLLEYQTMLKGRCPSVSAPSLITDSVISVPSWKSERPTAISEHWDQGQRLKLSPNKYQPIQPIQTSKLEQDHFQVARQNHFPQRQVETTETLRASDILTNQALESQEHLRQFSQTETQQRDYKLVPKDSETLSRALSHDRQLISQDARKISETFGATTFQSLESQQLFSENSENISYHLTEPSSFVPLVPQHSFSSLPVKVESGKIQEPFSAMSKSTVSTSHSIISQMHDRPLLPSENITAQQGNMKALQEQLDLQKKVLQATQEAQEQLLLCKQKEVEQQTGLSVFLPLVTPDSSALLPSAKADLGRIQESSPTKNNIAVSSDHHVISQLQDKRLSLSQPILSQQNNFKFLQEQLNIQKDSLQARREAQEVLYVHKQSELDRRVCSEQAEPSFPFQVAQHTFTSLPSADTKSGKIQEQHSSKSEKGLVSCQSDIPISQDGSLSFLQQFLPLHDSLKLLQEQLTKQRDTLQARHEAQVELLLHRQRDLGDSKSGLVSSSSSPVVVQHSVASQASAKAEPRRIQELYLSEKENVGPSCHLIIPTFQDKSLSFPQHSLAQQENLTILQEQSQIQRVILGAKEGTQEFVHTESELEKRISSEQTGTSSSLSQVDESERFQECISIKSDSTIPLSHPKIPRCQERLLRVSQHMLPLQDNLEEHQAWLDTEKEAFHFSQKTQENTSSEQTGSSSFIPQLVQLSFTSLASAESGTILEPLFTESESKIFSSHLQIPQLQDRLLRISQLIQPQQDNLKALQEQLATQREAIILARQEAREELLLHQSEWEGRISPEQVDTSSLPLVPQHSFASLPLNESERNQEPCSINSDNIVSSGHSEIPTLPDGLLGLSHLVLPQQDNLIALEEHLHAQTDFLPSIEKTQKELVLSKPCKFEEKVSSEHFIQSHHGDLQALQQQLDTQKKAIRSIQEVQEELLLQRLSELEKRVSSEQVCSSSFVSQVPVADSERTQKSFPTKSNDTLPSSHREIPRLQDRLLSLSKPILPQQDNMTAQLDAQREVMYSYEKPQEELSLNKQRKLNKSESAEHTIPSLFLPKETEHSFIPLPFAEAKPKSTCELYSSQNEHAAPPSNPVIPGFQDRLLSFSQSVLTQQDNLGLQKQLDLQREVLHYSQKAQEKLLVQRQTALQQQIQKHEETLKDFFKDSQISKPTVENDLKTQKMGQLRDWFPNTQDLAGNDQENIRHADRNNSDDNHLASEDTSAKQSGEHLEKDLGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPAIGRTSILGKPGIYEDRDPLRVSISREQSFFGSPLAHDPFSCLQLVGQENVCGDDYDEAVKLKESVVENHAVLSYAVEEEHAYLGPTVKPDDKAKTLSYEPLSSATVSTGSLLSYENTDLSLTDPESFSEHMDDSKQESTTSKEEETNIISSIVPSTQDIYQRQNSSDVHKSLLPAVDETTCGHTHFQQMIDKYINEANLIPEKTDLQELEHIFPNLHHQLFKPLEPHPDFDLSSSSSGISPDNRDFYQRSDSSSESHCATGLSKSTVYFTALRRTSMHSSLNTSPNQQPDTNLAHVGAHSFATENIIGGSEQCFEQLQPEYSSQEESQHADLPSIFSIEARDSSQGMKNQNYPSEEHTEILQNKKKIVHFQLSIGNLSSVYSSSDEANVFDQLNVQHSTPCGSNSSECSTKHQLESRKESMGFEELSKRGVVTMLQSQGLIEDNKNETCRVLDINPQVEETDSRLCVRTVEMGTSIQAPYSLTTQNEKYFENSAETDIPKITKKLSQLGESELFASSGSFSLQSSIPVWETETGHGIMEEPELTLISTTDTSIAEMDFANLTLEEKSENEAKCFFQVSEFLPLVSATEASDYPAVSELSIEKPRTASTETPRRLTPVPGSLQEAFIKRKKSFMERSHQRQKEIRNKIHVSENSQIKTVKEKPSISSSVSRLKGVNKVRASFPEDRKTTQALRHQRGLRLYNQLAEVKQQKEEKTKQEAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2601 }, "evidence": [ { "id": "A0A9J7FTM8", "url": "https://omabrowser.org/oma/group/A0A9J7FTM8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of centriole replication", "id": "GO:0046599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046599", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "positive regulation of establishment of protein localization", "id": "GO:1904951", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904951", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "positive regulation of centriole elongation", "id": "GO:1903724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903724", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" }, { "name": "positive regulation of centrosome duplication", "id": "GO:0010825", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010825", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1312, "end_pos": 1314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1631, "end_pos": 1633, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1694, "end_pos": 1696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1705, "end_pos": 1707, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1753, "end_pos": 1755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1871, "end_pos": 1873, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1990, "end_pos": 1992, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2159, "end_pos": 2161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2184, "end_pos": 2186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2190, "end_pos": 2192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2335, "end_pos": 2337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2397, "end_pos": 2399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 867, "end_pos": 869, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FTM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTM8" }, { "id": "PF28375", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28375" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosomal protein of 295 kDa-like", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 659, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": 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] }, { "id": "A0A9J7FTC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPTVAVETACMAALRPVSNRSFQREEAGGSANSSVTTRTPVPAVSSGSPERLVSLPQVAEPPEKNLWEQICEEYEAEFPTLPEEYKVKQEGAVTVSSVTPLEELVPHGFNMEHYLPVHPLPVLPPEPCPPKKAETVEPKTCSPRDYLEMFIFPVLLPGMANLLHQAKREKCFERKKTKFIACDFLTEWLYNQNPKRAGEPFTEFFSIPFVKKWLQCHPRPPIPLSLLLTEEEAAISIQSFWRAYLVRCDPEIQELRQWQKKLREDKHIRQRVKIFWAKQEHKMKCKMEDEEVPAAPVPPSP", "length": 302, "header": "tr|A0A9J7FTC0-1|A0A9J7FTC0_CRIGR Isoform 1 of IQ domain-containing protein K isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763057 PE=4 SV=1 CANONICAL=A0A9J7FTC0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC0/entry#A0A9J7FRH2-1", "sequence": { "sequence": "MLPTVAVETACMAALRPVSNRSFQREEAGGSANSSVTTRTPVPAVSSGSPERLVSLPQVAEPPEKNLWEQICEEYEAEFPTLPEEYKVKQEGAVTVSSVTPLEELVPHGFNMEHYLPVHPLPVLPPEPCPPKKAETVEPKTCSPRDYLEMFIFPVLLPGMANLLHQAKREKCFERKKTKFIACDFLTEWLYNQNPKRAGEPFTEFFSIPFVKKWLQCHPRPPIPLSLLLTEEEAAISIQSFWRAYLQL", "length": 248, "header": "tr|A0A9J7FRH2-1|A0A9J7FTC0_CRIGR Computationally mapped isoform of IQ domain-containing protein K isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763057 PE=4 SV=1 CANONICAL=A0A9J7FTC0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC0/entry#A0A9J7FTC0-1", "sequence": { "sequence": "MLPTVAVETACMAALRPVSNRSFQREEAGGSANSSVTTRTPVPAVSSGSPERLVSLPQVAEPPEKNLWEQICEEYEAEFPTLPEEYKVKQEGAVTVSSVTPLEELVPHGFNMEHYLPVHPLPVLPPEPCPPKKAETVEPKTCSPRDYLEMFIFPVLLPGMANLLHQAKREKCFERKKTKFIACDFLTEWLYNQNPKRAGEPFTEFFSIPFVKKWLQCHPRPPIPLSLLLTEEEAAISIQSFWRAYLVRCDPEIQELRQWQKKLREDKHIRQRVKIFWAKQEHKMKCKMEDEEVPAAPVPPSP", "length": 302, "header": "tr|A0A9J7FTC0-1|A0A9J7FTC0_CRIGR Isoform 1 of IQ domain-containing protein K isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763057 PE=4 SV=1 CANONICAL=A0A9J7FTC0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC0/entry#A0A9J7FTH7-1", "sequence": { "sequence": "MLPTVAVETACMAALRPVSNRSFQREEAGGSANSSVTTRTPVPAVSSGSPERLVSLPQVAEPPEKNLWEQICEEYEAEFPTLPEEYKVKQEGAVTVSSVTPLEELVPHGFNMEHYLPVHPLPVLPPEPCPPKKAETVEPKTCSPRDYLEMFIFPVLLPGMANLLHQAKREKCFERKKTKFIACDFLTEWLYNPRPPIPLSLLLTEEEAAISIQSFWRAYLVRCDPEIQELRQWQKKLREDKHIRQRVKIFWAKQEHKMKCKMEDEEVPAAPVPPSP", "length": 276, "header": "tr|A0A9J7FTH7-1|A0A9J7FTH7_CRIGR Computationally mapped isoform of IQ domain-containing protein K isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100763057 PE=4 SV=1 CANONICAL=A0A9J7FTC0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRH2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRH2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763057", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763057", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FS38-1", "uniprot_ac": "A0A9J7FS38", "uniprot_id": "A0A9J7FS38_CRIGR", "mass": { "chemical_mass": 291523.0, "monoisotopic_mass": 291523.0 }, "refseq": { "ac": "XP_027266458", "name": "piezo-type mechanosensitive ion channel component 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266458" }, "gene_names": [ { "name": "Piezo1", "type": "recommended", "evidence": [ { "id": "A0A9J7FS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38" } ] }, { "name": "Piezo1", "type": "synonym", "evidence": [ { "id": "XP_027266458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266458" } ] } ], "protein_names": [ { "name": "Piezo-type mechanosensitive ion channel component 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38/entry#names_and_taxonomy" } ] }, { "name": "piezo-type mechanosensitive ion channel component 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027266458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266458" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266458" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FS38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Piezo1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38", "locus": {} } ], "crossref": [ { "id": "100754271", "url": "https://www.ncbi.nlm.nih.gov/gene/100754271", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031805", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031805", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754271", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754271", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FS38", "url": "https://www.orthodb.org/?gene=A0A9J7FS38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47049:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47049:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12166", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12166", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15917", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15917", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24871", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24871", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K799", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K799", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K799-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K799-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPHVLGAGLYWLLLPCTLLAASLLRFNALSLVYLLFLLLLPWLPGPSRHSIPGHTGRLLRALLCLSLLFLVAHLAFQICLHTIPHLKQLLEQNCSLWETVSRHIGVTRLDLKDLKDILNTTRLVAPDLGVLVVSSLCLGLCGRLTRKARQSQRTQELQDDDDMDAAPAVRLQGAPALGTKRRLWLTSRFRVTAHWLLVASGRMLTIVLLALAGIAHPSAFSSVYLLVFLAICTWWACHFPLSSLGFNTLFVMVSCFGAGHLICLYCYQIPFVQDMLPPGSIWARVFGLKNFIDLPNCSSPNVLILNTNHSWPIYVSPGILLLLYYTATSLLKLRKSRPSDLRKESPREDEEQELELDQLEPEPQARDDTQCVMPTSTGPDIDNCTVHVLTSQSPVRQRPTRPRLAELKEMSPLHGLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGLTLYCLRYVWAMELPELPTTLGPVSLHQLGLEHTRYPCLDLGAMLLYLLTFWLLLRQFVKEKLLKKAKVPAALLEVTVADTEPTQTQTLLRSVGELVTGIYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLRVFWWLVVAYTMLVLIAVYTFQFQDFPTYWRNLTGFTDEQLGDLGLEQFSVSELFSSILIPGFFLLACILQLHYFHRPFMQLTDLEHVPPPGTRRPRWSHRQDAVSETPLLQQQEEEEVFRDDGLGVDGPHQATQVPEGAASKWGLVADRLLDLAASFSDVLTRVQVFVRRLLELHIFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCIIIVCKMLYQLKIVNPHEYSSNCTEPFPNSTNLQPMEINQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQILLLLVFESVVYRRQEHYRRQHQRAPLPAQAVCANGTRQRLDQDLLSCVKYFINFFFYKFGLEICFLMAVNVIGQRMNFMVILHGCWLVAILTRRSREAIARLWPNYCLFLTLFLLYQYLLCLGMPPALCIDYPWRWSQAIPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAEHTEEWQRMAGINTDHLEPLRGEPNPVPNFIHCRSYLDMLKVAIFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTTLLQKDTRAQLVLWDCLILYNVTVIISKNMLSLLSCVFVEQMQSNFCWVIQLFSLVCTVKGYYNPKEMMSRDRDCLLPVEEAGIIWDSVCFFFLLLQRRIFLSHYFLHVSAELKATALQASRGFALYNAANLKSINFHRQVEEKSLAQLKRQMKRIRAKQEKYRQSQANRGQLQSTDSQGPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEETLPEDPRPAAQNAFQMAYQAWVTNAQTVLRQRREQARQEQAGQMASGGDLSQEVEPVEVLEDEMAGHSHMMQRVLSTMQFLWVLGQATVDGLTRWLCTFTKHHRTMSDVLRAERYLLTRELLRGGEVHRGVLDQLYVSEAETTLPAGPMETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIITDTGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAEQFEAQQGRTLRLLSAMYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLIFLWAMLTIPRPSKRFWMTAIVFTEVMVVTKYLFQFGFFPWNSYMVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLLALFFHRSQLLCYGLWDHEEDSFSKDNCRNSEKDQEAEEESEAMLESQPEAGTGHPEELVLTGTPKDHIQGKGNVKSKDGIQEALEDLKPQNTRHIGIRFRRRKKTPRPKGAAATEAEEEEEEEEEGKEAAGRKSPHHTQGGLKVQERMKAAGRRLQSFCLSLAQSIYQPLRRFFHDILHTKYRAATDVYVLMFLADIVDFIIIVFGFWAFGKHSAATDIASSLSDDQVPEAFLFMLLVQFSTMVIDRALYLRKTVLGKLAFQVVLVVAIHLWMFFILPAVTERMFNQNAVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHVNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIVKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFIIAIIWFPLLFMSLIRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIVPFTPQAYEELCQQFDSYPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNGTADITLRFTWNFQRDLAKGGKVEYTNEKHTLELAPNSTARRQLAQLLEGRLDQSVVIPNLFPKYIRAPNGPEANPVKQLQPDEEADYLGVRIQLRREQVGTGASGEQADTKASDFLEWWVIELQDCQADCNLLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVIGKFMRGFFSDISHSIMFEELPYVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "length": 2546, "header": "tr|A0A9J7FS38-1|A0A9J7FS38_CRIGR Isoform 1 of Piezo-type mechanosensitive ion channel component 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Piezo1 PE=3 SV=1 CANONICAL=A0A9J7FS38-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38/entry#A0A9J7FRJ7-1", "sequence": { "sequence": "MEPHVLGAGLYWLLLPCTLLAASLLRFNALSLVYLLFLLLLPWLPGPSRHSIPGHTGRLLRALLCLSLLFLVAHLAFQICLHTIPHLKQLLEQNCSLWETVSRHIGVTRLDLKDLKDILNTTRLVAPDLGVLVVSSLCLGLCGRLTRKARQSQRTQELQDDDDMDAAPAVRLQGAPALGTKRRLWLTSRFRVTAHWLLVASGRMLTIVLLALAGIAHPSAFSSVYLLVFLAICTWWACHFPLSSLGFNTLFVMVSCFGAGHLICLYCYQIPFVQDMLPPGSIWARVFGLKNFIDLPNCSSPNVLILNTNHSWPIYVSPGILLLLYYTATSLLKLRKSRPSDLRKESPREDEEQELELDQLEPEPQARDDTQCVMPTSTGPDIDNCTVHVLTSQSPVRQRPTRPRLAELKEMSPLHGLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGLTLYCLRYVWAMELPELPTTLGPVSLHQLGLEHTRYPCLDLGAMLLYLLTFWLLLRQFVKEKLLKKAKVPAALLEVTVADTEPTQTQTLLRSVGELVTGIYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLRVFWWLVVAYTMLVLIAVYTFQFQDFPTYWRNLTGFTDEQLGDLGLEQFSVSELFSSILIPGFFLLACILQLHYFHRPFMQLTDLEHVPPPGTRRPRWSHRQDAVSETPLLQQQEEEEVFRDDGLGVDGPHQATQVPEGAASKWGLVADRLLDLAASFSDVLTRVQVFVRRLLELHIFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCIIIVCKMLYQLKIVNPHEYSSNCTEPFPNSTNLQPMEINQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQILLLLVFESVVYRRQEHYRRQHQRAPLPAQAVCANGTRQRLDQDLLSCVKYFINFFFYKFGLEICFLMAVNVIGQRMNFMVILHGCWLVAILTRRSREAIARLWPNYCLFLTLFLLYQYLLCLGMPPALCIDYPWRWSQAIPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAEHTEEWQRMAGINTDHLEPLRGEPNPVPNFIHCRSYLDMLKVAIFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTTLLQKDTRAQLVLWDCLILYNVTVIISKNMLSLLSCVFVEQMQSNFCWVIQLFSLVCTVKGYYNPKEMMSRDRDCLLPVEEAGIIWDSVCFFFLLLQRRIFLSHYFLHVSAELKATALQASRGFALYNAANLKSINFHRQVEEKSLAQLKRQMKRIRAKQEKYRQSQANRGQLQSTDSQGPSQEPVIHSGDYFLFESDSEEEEETLPEDPRPAAQNAFQMAYQAWVTNAQTVLRQRREQARQEQAGQMASGGDLSQEVEPVEVLEDEMAGHSHMMQRVLSTMQFLWVLGQATVDGLTRWLCTFTKHHRTMSDVLRAERYLLTRELLRGGEVHRGVLDQLYVSEAETTLPAGPMETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIITDTGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAEQFEAQQGRTLRLLSAMYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLIFLWAMLTIPRPSKRFWMTAIVFTEVMVVTKYLFQFGFFPWNSYMVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLLALFFHRSQLLCYGLWDHEEDSFSKDNCRNSEKDQEAEEESEAMLESQPEAGTGHPEELVLTGTPKDHIQGKGNVKSKDGIQEALEDLKPQNTRHIGIRFRRRKKTPRPKGAAATEAEEEEEEEEEGKEAAGRKSPHHTQGGLKVQERMKAAGRRLQSFCLSLAQSIYQPLRRFFHDILHTKYRAATDVYVLMFLADIVDFIIIVFGFWAFGKHSAATDIASSLSDDQVPEAFLFMLLVQFSTMVIDRALYLRKTVLGKLAFQVVLVVAIHLWMFFILPAVTERMFNQNAVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHVNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIVKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFIIAIIWFPLLFMSLIRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIVPFTPQAYEELCQQFDSYPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNGTADITLRFTWNFQRDLAKGGKVEYTNEKHTLELAPNSTARRQLAQLLEGRLDQSVVIPNLFPKYIRAPNGPEANPVKQLQPDEEADYLGVRIQLRREQVGTGASGEQADTKASDFLEWWVIELQDCQADCNLLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVIGKFMRGFFSDISHSIMFEELPYVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "length": 2522, "header": "tr|A0A9J7FRJ7-1|A0A9J7FS38_CRIGR Computationally mapped isoform of Piezo-type mechanosensitive ion channel component 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Piezo1 PE=3 SV=1 CANONICAL=A0A9J7FS38-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38/entry#A0A9J7FS38-1", "sequence": { "sequence": "MEPHVLGAGLYWLLLPCTLLAASLLRFNALSLVYLLFLLLLPWLPGPSRHSIPGHTGRLLRALLCLSLLFLVAHLAFQICLHTIPHLKQLLEQNCSLWETVSRHIGVTRLDLKDLKDILNTTRLVAPDLGVLVVSSLCLGLCGRLTRKARQSQRTQELQDDDDMDAAPAVRLQGAPALGTKRRLWLTSRFRVTAHWLLVASGRMLTIVLLALAGIAHPSAFSSVYLLVFLAICTWWACHFPLSSLGFNTLFVMVSCFGAGHLICLYCYQIPFVQDMLPPGSIWARVFGLKNFIDLPNCSSPNVLILNTNHSWPIYVSPGILLLLYYTATSLLKLRKSRPSDLRKESPREDEEQELELDQLEPEPQARDDTQCVMPTSTGPDIDNCTVHVLTSQSPVRQRPTRPRLAELKEMSPLHGLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGLTLYCLRYVWAMELPELPTTLGPVSLHQLGLEHTRYPCLDLGAMLLYLLTFWLLLRQFVKEKLLKKAKVPAALLEVTVADTEPTQTQTLLRSVGELVTGIYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLRVFWWLVVAYTMLVLIAVYTFQFQDFPTYWRNLTGFTDEQLGDLGLEQFSVSELFSSILIPGFFLLACILQLHYFHRPFMQLTDLEHVPPPGTRRPRWSHRQDAVSETPLLQQQEEEEVFRDDGLGVDGPHQATQVPEGAASKWGLVADRLLDLAASFSDVLTRVQVFVRRLLELHIFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCIIIVCKMLYQLKIVNPHEYSSNCTEPFPNSTNLQPMEINQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQILLLLVFESVVYRRQEHYRRQHQRAPLPAQAVCANGTRQRLDQDLLSCVKYFINFFFYKFGLEICFLMAVNVIGQRMNFMVILHGCWLVAILTRRSREAIARLWPNYCLFLTLFLLYQYLLCLGMPPALCIDYPWRWSQAIPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAEHTEEWQRMAGINTDHLEPLRGEPNPVPNFIHCRSYLDMLKVAIFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTTLLQKDTRAQLVLWDCLILYNVTVIISKNMLSLLSCVFVEQMQSNFCWVIQLFSLVCTVKGYYNPKEMMSRDRDCLLPVEEAGIIWDSVCFFFLLLQRRIFLSHYFLHVSAELKATALQASRGFALYNAANLKSINFHRQVEEKSLAQLKRQMKRIRAKQEKYRQSQANRGQLQSTDSQGPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEETLPEDPRPAAQNAFQMAYQAWVTNAQTVLRQRREQARQEQAGQMASGGDLSQEVEPVEVLEDEMAGHSHMMQRVLSTMQFLWVLGQATVDGLTRWLCTFTKHHRTMSDVLRAERYLLTRELLRGGEVHRGVLDQLYVSEAETTLPAGPMETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIITDTGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAEQFEAQQGRTLRLLSAMYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLIFLWAMLTIPRPSKRFWMTAIVFTEVMVVTKYLFQFGFFPWNSYMVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLLALFFHRSQLLCYGLWDHEEDSFSKDNCRNSEKDQEAEEESEAMLESQPEAGTGHPEELVLTGTPKDHIQGKGNVKSKDGIQEALEDLKPQNTRHIGIRFRRRKKTPRPKGAAATEAEEEEEEEEEGKEAAGRKSPHHTQGGLKVQERMKAAGRRLQSFCLSLAQSIYQPLRRFFHDILHTKYRAATDVYVLMFLADIVDFIIIVFGFWAFGKHSAATDIASSLSDDQVPEAFLFMLLVQFSTMVIDRALYLRKTVLGKLAFQVVLVVAIHLWMFFILPAVTERMFNQNAVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHVNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIVKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFIIAIIWFPLLFMSLIRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIVPFTPQAYEELCQQFDSYPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNGTADITLRFTWNFQRDLAKGGKVEYTNEKHTLELAPNSTARRQLAQLLEGRLDQSVVIPNLFPKYIRAPNGPEANPVKQLQPDEEADYLGVRIQLRREQVGTGASGEQADTKASDFLEWWVIELQDCQADCNLLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVIGKFMRGFFSDISHSIMFEELPYVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "length": 2546, "header": "tr|A0A9J7FS38-1|A0A9J7FS38_CRIGR Isoform 1 of Piezo-type mechanosensitive ion channel component 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Piezo1 PE=3 SV=1 CANONICAL=A0A9J7FS38-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38/entry#A0A9J7FW23-1", "sequence": { "sequence": "MEPHVLGAGLYWLLLPCTLLAASLLRFNALSLVYLLFLLLLPWLPGPSRHSIPGHTGRLLRALLCLSLLFLVAHLAFQICLHTIPHLKQLLEQNCSLWETVSRHIGVTRLDLKDLKDILNTTRLVAPDLGVLVVSSLCLGLCGRLTRKARQSQRTQELDDDDMDAAPAVRLQGAPALGTKRRLWLTSRFRVTAHWLLVASGRMLTIVLLALAGIAHPSAFSSVYLLVFLAICTWWACHFPLSSLGFNTLFVMVSCFGAGHLICLYCYQIPFVQDMLPPGSIWARVFGLKNFIDLPNCSSPNVLILNTNHSWPIYVSPGILLLLYYTATSLLKLRKSRPSDLRKESPREDEEQELELDQLEPEPQARDDTQCVMPTSTGPDIDNCTVHVLTSQSPVRQRPTRPRLAELKEMSPLHGLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGLTLYCLRYVWAMELPELPTTLGPVSLHQLGLEHTRYPCLDLGAMLLYLLTFWLLLRQFVKEKLLKKAKVPAALLEVTVADTEPTQTQTLLRSVGELVTGIYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLRVFWWLVVAYTMLVLIAVYTFQFQDFPTYWRNLTGFTDEQLGDLGLEQFSVSELFSSILIPGFFLLACILQLHYFHRPFMQLTDLEHVPPPGTRRPRWSHRQDAVSETPLLQQQEEEEVFRDDGLGVDGPHQATQVPEGAASKWGLVADRLLDLAASFSDVLTRVQVFVRRLLELHIFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCIIIVCKMLYQLKIVNPHEYSSNCTEPFPNSTNLQPMEINQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQILLLLVFESVVYRRQEHYRRQHQRAPLPAQAVCANGTRQRLDQDLLSCVKYFINFFFYKFGLEICFLMAVNVIGQRMNFMVILHGCWLVAILTRRSREAIARLWPNYCLFLTLFLLYQYLLCLGMPPALCIDYPWRWSQAIPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAEHTEEWQRMAGINTDHLEPLRGEPNPVPNFIHCRSYLDMLKVAIFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTTLLQKDTRAQLVLWDCLILYNVTVIISKNMLSLLSCVFVEQMQSNFCWVIQLFSLVCTVKGYYNPKEMMSRDRDCLLPVEEAGIIWDSVCFFFLLLQRRIFLSHYFLHVSAELKATALQASRGFALYNAANLKSINFHRQVEEKSLAQLKRQMKRIRAKQEKYRQSQANRGQLQSTDSQGPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEETLPEDPRPAAQNAFQMAYQAWVTNAQTVLRQRREQARQEQAGQMASGGDLSQEVEPVEVLEDEMAGHSHMMQRVLSTMQFLWVLGQATVDGLTRWLCTFTKHHRTMSDVLRAERYLLTRELLRGGEVHRGVLDQLYVSEAETTLPAGPMETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIITDTGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAEQFEAQQGRTLRLLSAMYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLIFLWAMLTIPRPSKRFWMTAIVFTEVMVVTKYLFQFGFFPWNSYMVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLLALFFHRSQLLCYGLWDHEEDSFSKDNCRNSEKDQEAEEESEAMLESQPEAGTGHPEELVLTGTPKDHIQGKGNVKSKDGIQEALEDLKPQNTRHIGIRFRRRKKTPRPKGAAATEAEEEEEEEEEGKEAAGRKSPHHTQGGLKVQERMKAAGRRLQSFCLSLAQSIYQPLRRFFHDILHTKYRAATDVYVLMFLADIVDFIIIVFGFWAFGKHSAATDIASSLSDDQVPEAFLFMLLVQFSTMVIDRALYLRKTVLGKLAFQVVLVVAIHLWMFFILPAVTERMFNQNAVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHVNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIVKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFIIAIIWFPLLFMSLIRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIVPFTPQAYEELCQQFDSYPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNGTADITLRFTWNFQRDLAKGGKVEYTNEKHTLELAPNSTARRQLAQLLEGRLDQSVVIPNLFPKYIRAPNGPEANPVKQLQPDEEADYLGVRIQLRREQVGTGASGEQADTKASDFLEWWVIELQDCQADCNLLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVIGKFMRGFFSDISHSIMFEELPYVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "length": 2545, "header": "tr|A0A9J7FW23-1|A0A9J7FW23_CRIGR Computationally mapped isoform of Piezo-type mechanosensitive ion channel component 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Piezo1 PE=3 SV=1 CANONICAL=A0A9J7FS38-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K799-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS38/entry#A0A9J7K799-1", "sequence": { "sequence": "MEPHVLGAGLYWLLLPCTLLAASLLRFNALSLVYLLFLLLLPWLPGPSRHSIPGHTGRLLRALLCLSLLFLVAHLAFQICLHTIPHLKQLLEQNCSLWETVSRHIGVTRLDLKDLKDILNTTRLVAPDLGVLVVSSLCLGLCGRLTRKARQSQRTQELQDDDDMDAAPAVRLQGAPALGTKRRLWLTSRFRVTAHWLLVASGRMLTIVLLALAGIAHPSAFSSVYLLVFLAICTWWACHFPLSSLGFNTLFVMVSCFGAGHLICLYCYQIPFVQDMLPPGSIWARVFGLKNFIDLPNCSSPNVLILNTNHSWPIYVSPGILLLLYYTATSLLKLRKSRPSDLRKESPREDEEQELELDQLEPEPQARDDTQCVMPTSTGPDIDNCTVHVLTSQSPVRQRPTRPRLAELKEMSPLHGLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGLTLYCLRYVWAMELPELPTTLGPVSLHQLGLEHTRYPCLDLGAMLLYLLTFWLLLRQFVKEKLLKKAKVPAALLEVTVADTEPTQTQTLLRSVGELVTGIYAKYWIYVCAGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLRVFWWLVVAYTMLVLIAVYTFQFQDFPTYWRNLTGFTDEQLGDLGLEQFSVSELFSSILIPGFFLLACILQLHYFHRPFMQLTDLEHVPPPGTRRPRWQDAVSETPLLQQQEEEEVFRDDGLGVDGPHQATQVPEGAASKWGLVADRLLDLAASFSDVLTRVQVFVRRLLELHIFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMASCLSTVWTCIIIVCKMLYQLKIVNPHEYSSNCTEPFPNSTNLQPMEINQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQILLLLVFESVVYRRQEHYRRQHQRAPLPAQAVCANGTRQRLDQDLLSCVKYFINFFFYKFGLEICFLMAVNVIGQRMNFMVILHGCWLVAILTRRSREAIARLWPNYCLFLTLFLLYQYLLCLGMPPALCIDYPWRWSQAIPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAEHTEEWQRMAGINTDHLEPLRGEPNPVPNFIHCRSYLDMLKVAIFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTTLLQKDTRAQLVLWDCLILYNVTVIISKNMLSLLSCVFVEQMQSNFCWVIQLFSLVCTVKGYYNPKEMMSRDRDCLLPVEEAGIIWDSVCFFFLLLQRRIFLSHYFLHVSAELKATALQASRGFALYNAANLKSINFHRQVEEKSLAQLKRQMKRIRAKQEKYRQSQANRGQLQSTDSQGPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEETLPEDPRPAAQNAFQMAYQAWVTNAQTVLRQRREQARQEQAGQMASGGDLSQEVEPVEVLEDEMAGHSHMMQRVLSTMQFLWVLGQATVDGLTRWLCTFTKHHRTMSDVLRAERYLLTRELLRGGEVHRGVLDQLYVSEAETTLPAGPMETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIITDTGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAEQFEAQQGRTLRLLSAMYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLIFLWAMLTIPRPSKRFWMTAIVFTEVMVVTKYLFQFGFFPWNSYMVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLLALFFHRSQLLCYGLWDHEEDSFSKDNCRNSEKDQEAEEESEAMLESQPEAGTGHPEELVLTGTPKDHIQGKGNVKSKDGIQEALEDLKPQNTRHIGIRFRRRKKTPRPKGAAATEAEEEEEEEEEGKEAAGRKSPHHTQGGLKVQERMKAAGRRLQSFCLSLAQSIYQPLRRFFHDILHTKYRAATDVYVLMFLADIVDFIIIVFGFWAFGKHSAATDIASSLSDDQVPEAFLFMLLVQFSTMVIDRALYLRKTVLGKLAFQVVLVVAIHLWMFFILPAVTERMFNQNAVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHVNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIVKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFIIAIIWFPLLFMSLIRSVVGVVNQPIDVTVTLKLGGYEPLFTMSAQQPSIVPFTPQAYEELCQQFDSYPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNGTADITLRFTWNFQRDLAKGGKVEYTNEKHTLELAPNSTARRQLAQLLEGRLDQSVVIPNLFPKYIRAPNGPEANPVKQLQPDEEADYLGVRIQLRREQVGTGASGEQADTKASDFLEWWVIELQDCQADCNLLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVIGKFMRGFFSDISHSIMFEELPYVDRILKLCQDIFLVRETRELELEEELYAKLIFLYRSPETMIKWTREKE", "length": 2543, "header": "tr|A0A9J7K799-1|A0A9J7K799_CRIGR Computationally mapped isoform of Piezo-type mechanosensitive ion channel component 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Piezo1 PE=3 SV=1 CANONICAL=A0A9J7FS38-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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"protein_names": [ { "name": "LOW QUALITY PROTEIN: olfactory receptor 14A2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027263744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263744" }, { "id": "A0A9J7FRL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 3 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263744" } ] }, { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756904", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3", "locus": {} } ], "crossref": [ { "id": "cd15227", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15227", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756904", "url": "https://www.ncbi.nlm.nih.gov/gene/100756904", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756904", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756904", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FRL3", "url": "https://www.orthodb.org/?gene=A0A9J7FRL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263744", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FRL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNVTAITGFILMGFSDIQDLQTLCGVFFLVMYLAALISNLIIITLITLDLQLQTPMYFFLKNLSMLDALFVSVPIPNYFVNSLTYNNSISIIGCIFQVFLMTSFAAGEVFILTVMPYDHYVAICSPLYYQAIMSSDTCVLMVAVSWTIGVMIGAIYTAGTFSMPFCGSNVIPQIFCDIPSLLRISCSKTLVVIYSSLGIGVCIGVFCFICVVISYSYIFSTVLKIPTTKGQSKAFATCIPHLTVFTLFIATACFVYMKLPSHVPSITDRVYNVLYTVLPPTLNPLIYSLKNTDVKCALRRLQQNLCPRGSLHVTPXSVCQXYSASXFTSKFFNF", "length": 335, "header": "tr|A0A9J7FRL3-1|A0A9J7FRL3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 14A2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756904 PE=3 SV=1 CANONICAL=A0A9J7FRL3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRL3/entry#A0A9J7FRL3-1", "sequence": { "sequence": "MSNVTAITGFILMGFSDIQDLQTLCGVFFLVMYLAALISNLIIITLITLDLQLQTPMYFFLKNLSMLDALFVSVPIPNYFVNSLTYNNSISIIGCIFQVFLMTSFAAGEVFILTVMPYDHYVAICSPLYYQAIMSSDTCVLMVAVSWTIGVMIGAIYTAGTFSMPFCGSNVIPQIFCDIPSLLRISCSKTLVVIYSSLGIGVCIGVFCFICVVISYSYIFSTVLKIPTTKGQSKAFATCIPHLTVFTLFIATACFVYMKLPSHVPSITDRVYNVLYTVLPPTLNPLIYSLKNTDVKCALRRLQQNLCPRGSLHVTPXSVCQXYSASXFTSKFFNF", "length": 335, "header": "tr|A0A9J7FRL3-1|A0A9J7FRL3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 14A2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756904 PE=3 SV=1 CANONICAL=A0A9J7FRL3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "PTHR15319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15319:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15319:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20641", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20641", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7JF62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFPSSLRPSLFMAGPLGMTDGPDLSFMCSWRDALTMPGSQPQNCKDGTLPLAKNLLWEPTTPGPLPLLPPGPDPWEPGMTPRDLLFRGGHRYQFRPQVGLDVTEQLSRFLWDHGDIAFTPLGRLMLENFRLEGNKGYSKKMTIVSAKRLLQDLGGHQPWGCPWAFLSHRLRRFSILGGPVLSSSVSLLLGRLLHEELAMRWEQLLLDEAFTGGALAWLPGRTARAGQLVYPSGGALDKLNFQEVSVNSGGNLRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAIWKTDKQGPPASLQVLQVEKGATGVSLSPHLPGEMAICSRSGAVCLWTPQDGLQLVYKDPETLAFRDPSPWRWVDFTAHPRVLTVGDRTGLKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQPGPTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLAHLLPPASPGSPWPLLLGGQGGQLQLLHIAGEGTSMPHLAGPPQSLPSIIDSLPAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPALLLFQLSAAGDVFYQHLRLQAASSLGEGEPPDHLASECPAPRALTPSVDQSSWTPQASARCRRWLEALMELSPACPVWAAPTFSHRRFLGHVEQQKSQTMSQKLRSAMAKGKLLRPEDLGTLPRAELPPAPQCSQQDELTERLAEAWEGGAAAWWKRLQGQTSGSQAQIKRPKRRTQLASTFSSLTSCLDFPDTSSPPCSQNLATSEAWPQPPGTLPSQELTQEPWAQGVRRERRQTLRDYMAKLPLQKDTPGPVATPPSQASSLQATPLRRQTPVLSGSHPPRKKPRMGF", "length": 842, "header": "tr|A0A9J7FRQ2-1|A0A9J7FRQ2_CRIGR Isoform 1 of TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1 OS=Cricetulus griseus OX=10029 GN=Taf1c PE=4 SV=1 CANONICAL=A0A9J7FRQ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2/entry#A0A9J7FRQ2-1", "sequence": { "sequence": "MDFPSSLRPSLFMAGPLGMTDGPDLSFMCSWRDALTMPGSQPQNCKDGTLPLAKNLLWEPTTPGPLPLLPPGPDPWEPGMTPRDLLFRGGHRYQFRPQVGLDVTEQLSRFLWDHGDIAFTPLGRLMLENFRLEGNKGYSKKMTIVSAKRLLQDLGGHQPWGCPWAFLSHRLRRFSILGGPVLSSSVSLLLGRLLHEELAMRWEQLLLDEAFTGGALAWLPGRTARAGQLVYPSGGALDKLNFQEVSVNSGGNLRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAIWKTDKQGPPASLQVLQVEKGATGVSLSPHLPGEMAICSRSGAVCLWTPQDGLQLVYKDPETLAFRDPSPWRWVDFTAHPRVLTVGDRTGLKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQPGPTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLAHLLPPASPGSPWPLLLGGQGGQLQLLHIAGEGTSMPHLAGPPQSLPSIIDSLPAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPALLLFQLSAAGDVFYQHLRLQAASSLGEGEPPDHLASECPAPRALTPSVDQSSWTPQASARCRRWLEALMELSPACPVWAAPTFSHRRFLGHVEQQKSQTMSQKLRSAMAKGKLLRPEDLGTLPRAELPPAPQCSQQDELTERLAEAWEGGAAAWWKRLQGQTSGSQAQIKRPKRRTQLASTFSSLTSCLDFPDTSSPPCSQNLATSEAWPQPPGTLPSQELTQEPWAQGVRRERRQTLRDYMAKLPLQKDTPGPVATPPSQASSLQATPLRRQTPVLSGSHPPRKKPRMGF", "length": 842, "header": "tr|A0A9J7FRQ2-1|A0A9J7FRQ2_CRIGR Isoform 1 of TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1 OS=Cricetulus griseus OX=10029 GN=Taf1c PE=4 SV=1 CANONICAL=A0A9J7FRQ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2/entry#A0A9J7FRR8-1", "sequence": { "sequence": "MDFPSSLRPSLFMAGPLGMTDGPDLSFMCSWRDALTMPGSQPQNCKDGTLPLAKNLLWEPTTPGPLPLLPPGPDPWEPGMTPRDLLFRGGHRYQFRPQVGLDVTEQLSRFLWDHGDIAFTPLGRLMLENFRLEGNKGYSKKMTIVSAKRLLQDLGGHQPWGCPWAFLSHRLRRFSILGGPVLSSSVSLLLGRLLHEELAMRWEQLLLDEAFTGGALAWLPGRTARAGQLVYPSGGALDKLNFQEVSVNSGGNLRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAIWKTDKQGPPASLQVLQVEKGATGVSLSPHLPGEMAICSRSGAVCLWTPQDGLQLVYKDPETLAFRDPSPWRWVDFTAHPRVLTVGDRTGLKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQPGPTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLAHLLPPASPGSPWPLLLGGQGGQLQLLHIAEGTSMPHLAGPPQSLPSIIDSLPAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPALLLFQLSAAGDVFYQHLRLQAASSLGEGEPPDHLASECPAPRALTPSVDQSSWTPQASARCRRWLEALMELSPACPVWAAPTFSHRRFLGHVEQQKSQTMSQKLRSAMAKGKLLRPEDLGTLPRAELPPAPQCSQQDELTERLAEAWEGGAAAWWKRLQGQTSGSQAQIKRPKRRTQLASTFSSLTSCLDFPDTSSPPCSQNLATSEAWPQPPGTLPSQELTQEPWAQGVRRERRQTLRDYMAKLPLQKDTPGPVATPPSQASSLQATPLRRQTPVLSGSHPPRKKPRMGF", "length": 841, "header": "tr|A0A9J7FRR8-1|A0A9J7FRR8_CRIGR Computationally mapped isoform of TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X2 OS=Cricetulus griseus OX=10029 GN=Taf1c PE=4 SV=1 CANONICAL=A0A9J7FRQ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GY69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2/entry#A0A9J7GY69-1", "sequence": { "sequence": "MRWEQLLLDEAFTGGALAWLPGRTARAGQLVYPSGGALDKLNFQEVSVNSGGNLRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAIWKTDKQGPPASLQVLQVEKGATGVSLSPHLPGEMAICSRSGAVCLWTPQDGLQLVYKDPETLAFRDPSPWRWVDFTAHPRVLTVGDRTGLKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQPGPTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLAHLLPPASPGSPWPLLLGGQGGQLQLLHIAGEGTSMPHLAGPPQSLPSIIDSLPAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPALLLFQLSAAGDVFYQHLRLQAASSLGEGEPPDHLASECPAPRALTPSVDQSSWTPQASARCRRWLEALMELSPACPVWAAPTFSHRRFLGHVEQQKSQTMSQKLRSAMAKGKLLRPEDLGTLPRAELPPAPQCSQQDELTERLAEAWEGGAAAWWKRLQGQTSGSQAQIKRPKRRTQLASTFSSLTSCLDFPDTSSPPCSQNLATSEAWPQPPGTLPSQELTQEPWAQGVRRERRQTLRDYMAKLPLQKDTPGPVATPPSQASSLQATPLRRQTPVLSGSHPPRKKPRMGF", "length": 643, "header": "tr|A0A9J7GY69-1|A0A9J7GY69_CRIGR Computationally mapped isoform of TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X4 OS=Cricetulus griseus OX=10029 GN=Taf1c PE=4 SV=1 CANONICAL=A0A9J7FRQ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2/entry#A0A9J7JF62-1", "sequence": { "sequence": "MSGAPAPFWAPDQDGTLPLAKNLLWEPTTPGPLPLLPPGPDPWEPGMTPRDLLFRGGHRYQFRPQVGLDVTEQLSRFLWDHGDIAFTPLGRLMLENFRLEGNKGYSKKMTIVSAKRLLQDLGGHQPWGCPWAFLSHRLRRFSILGGPVLSSSVSLLLGRLLHEELAMRWEQLLLDEAFTGGALAWLPGRTARAGQLVYPSGGALDKLNFQEVSVNSGGNLRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAIWKTDKQGPPASLQVLQVEKGATGVSLSPHLPGEMAICSRSGAVCLWTPQDGLQLVYKDPETLAFRDPSPWRWVDFTAHPRVLTVGDRTGLKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQPGPTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLAHLLPPASPGSPWPLLLGGQGGQLQLLHIAGEGTSMPHLAGPPQSLPSIIDSLPAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPALLLFQLSAAGDVFYQHLRLQAASSLGEGEPPDHLASECPAPRALTPSVDQSSWTPQASARCRRWLEALMELSPACPVWAAPTFSHRRFLGHVEQQKSQTMSQKLRSAMAKGKLLRPEDLGTLPRAELPPAPQCSQQDELTERLAEAWEGGAAAWWKRLQGQTSGSQAQIKRPKRRTQLASTFSSLTSCLDFPDTSSPPCSQNLATSEAWPQPPGTLPSQELTQEPWAQGVRRERRQTLRDYMAKLPLQKDTPGPVATPPSQASSLQATPLRRQTPVLSGSHPPRKKPRMGF", "length": 809, "header": "tr|A0A9J7JF62-1|A0A9J7JF62_CRIGR Computationally mapped isoform of TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3 OS=Cricetulus griseus OX=10029 GN=Taf1c PE=4 SV=1 CANONICAL=A0A9J7FRQ2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 424, "start_aa": "Thr", "end_pos": 424, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr424", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 808, "start_aa": "Thr", "end_pos": 808, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr808", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774138", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774138", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA polymerase I core promoter sequence-specific DNA binding", "id": "GO:0001164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001164", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FRQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" }, { "id": "PF20643", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20643" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TAF1C C-terminal", "eco_id": "ECO_0000259", "start_pos": 763, "end_pos": 842, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FRQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" }, { "id": "PF20641", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20641" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TAF1C beta-propeller", "eco_id": "ECO_0000259", "start_pos": 283, "end_pos": 419, "start_aa": "Ala", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FRQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRQ2" }, { "id": "PF20642", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20642" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TAF1C helical bundle", "eco_id": "ECO_0000259", "start_pos": 527, "end_pos": 736, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 424, 808 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FRR4-1", "uniprot_ac": "A0A9J7FRR4", "uniprot_id": "A0A9J7FRR4_CRIGR", "mass": { "chemical_mass": 42117.0, "monoisotopic_mass": 42117.0 }, "refseq": { "ac": "XP_027266577", "name": "estradiol 17-beta-dehydrogenase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266577" }, "gene_names": [ { "name": "Hsd17b2", "type": "recommended", "evidence": [ { "id": "A0A9J7FRR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRR4" } ] }, { "name": "Hsd17b2", "type": "synonym", "evidence": [ { "id": "XP_027266577", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266577" } ] } ], "protein_names": [ { "name": "Estradiol 17-beta-dehydrogenase 2", "type": "synonym", "evidence": [ { "id": "A0A9J7FRR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRR4/entry#names_and_taxonomy" } ] }, { "name": "estradiol 17-beta-dehydrogenase 2", "type": "synonym", "evidence": [ { "id": "XP_027266577", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266577" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003618267.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003515557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515557" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FRY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Odf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRY9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FRY9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FRY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770509", "url": "https://www.ncbi.nlm.nih.gov/gene/100770509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770509", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RAPKYSM", "url": "https://omabrowser.org/oma/group/RAPKYSM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRY9", "url": "https://www.orthodb.org/?gene=A0A9J7FRY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003515557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FRY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEIWVGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLGPAYSILGRYQAKTLLTPGPGDYFPEKSTKHVFDSAPSHSISARTKTFRVDSTPGPAAYMLPVVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKTPGPAAYRQTDVQVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVILNKPCAPIVTFGIKHSDYMTPLVVDVE", "length": 254, "header": "tr|A0A9J7FRY9-1|A0A9J7FRY9_CRIGR Isoform 1 of Outer dense fiber protein 3 OS=Cricetulus griseus OX=10029 GN=Odf3 PE=4 SV=1 CANONICAL=A0A9J7FRY9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FRY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRY9/entry#A0A9J7FRY9-1", "sequence": { "sequence": "MAEEIWVGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLGPAYSILGRYQAKTLLTPGPGDYFPEKSTKHVFDSAPSHSISARTKTFRVDSTPGPAAYMLPVVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKTPGPAAYRQTDVQVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVILNKPCAPIVTFGIKHSDYMTPLVVDVE", "length": 254, "header": "tr|A0A9J7FRY9-1|A0A9J7FRY9_CRIGR Isoform 1 of Outer dense fiber protein 3 OS=Cricetulus griseus OX=10029 GN=Odf3 PE=4 SV=1 CANONICAL=A0A9J7FRY9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 35, "start_aa": "Thr", "end_pos": 35, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263848", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263848" } ] }, { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FSC6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FSC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15953", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15953", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772975", "url": "https://www.ncbi.nlm.nih.gov/gene/100772975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772975", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772975", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSC6", "url": "https://www.orthodb.org/?gene=A0A9J7FSC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263848", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263848", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLIFNHSSSMTFTLMGVPGLESQHLWLSVPFFSLLLAILIGNGAILFLVITEPTLHTPMYLLLALLMVADLASTLALVPKVLCLFWFDDRDIGVHACFTQMFFIHGASVVRSALLVTMAFDRFVAVCEPLRYNTILSHSLVGRLGLVALAKGVILILPMPLLLQRLTFCHTIIPHTYCDHMAVVKMACSNTRPNRIYGLFVILLVVGLDLLLIGFSYALILQAVVHLNSRDAIFKALNTCSAHLFVILITYVPALFSSITHRIGHNIPSHAHIILANLYLLVPSVFNPIIYGIKMKEIRDKVAKCLCR", "length": 308, "header": "tr|A0A9J7FSC6-1|A0A9J7FSC6_CRIGR Isoform 1 of Olfactory receptor 52P1 OS=Cricetulus griseus OX=10029 GN=LOC100772975 PE=3 SV=1 CANONICAL=A0A9J7FSC6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6/entry#A0A9J7FSC6-1", "sequence": { "sequence": "MLIFNHSSSMTFTLMGVPGLESQHLWLSVPFFSLLLAILIGNGAILFLVITEPTLHTPMYLLLALLMVADLASTLALVPKVLCLFWFDDRDIGVHACFTQMFFIHGASVVRSALLVTMAFDRFVAVCEPLRYNTILSHSLVGRLGLVALAKGVILILPMPLLLQRLTFCHTIIPHTYCDHMAVVKMACSNTRPNRIYGLFVILLVVGLDLLLIGFSYALILQAVVHLNSRDAIFKALNTCSAHLFVILITYVPALFSSITHRIGHNIPSHAHIILANLYLLVPSVFNPIIYGIKMKEIRDKVAKCLCR", "length": 308, "header": "tr|A0A9J7FSC6-1|A0A9J7FSC6_CRIGR Isoform 1 of Olfactory receptor 52P1 OS=Cricetulus griseus OX=10029 GN=LOC100772975 PE=3 SV=1 CANONICAL=A0A9J7FSC6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FSC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSC6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 291, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FSD3-1", "uniprot_ac": "A0A9J7FSD3", "uniprot_id": "A0A9J7FSD3_CRIGR", "mass": { "chemical_mass": 40569.0, "monoisotopic_mass": 40569.0 }, "refseq": { "ac": "XP_027267526", "name": "neurotrimin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267526" }, "gene_names": [ { "name": "Ntm", "type": "recommended", "evidence": [ { "id": "A0A9J7FSD3", "database": 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Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267526" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ntm", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FSD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FSD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753468", "url": "https://www.ncbi.nlm.nih.gov/gene/100753468", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753468", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753468", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSD3", "url": "https://www.orthodb.org/?gene=A0A9J7FSD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FVD0", "url": "https://www.orthodb.org/?gene=A0A9J7FVD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JNS3", "url": "https://www.orthodb.org/?gene=A0A9J7JNS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFELNEPTSSTLLQEVKTTAMTPWKGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF", "length": 367, "header": "tr|A0A9J7FSD3-1|A0A9J7FSD3_CRIGR Isoform 1 of Neurotrimin isoform X1 OS=Cricetulus griseus OX=10029 GN=Ntm PE=3 SV=1 CANONICAL=A0A9J7FSD3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3/entry#A0A9J7FSD3-1", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFELNEPTSSTLLQEVKTTAMTPWKGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF", "length": 367, "header": "tr|A0A9J7FSD3-1|A0A9J7FSD3_CRIGR Isoform 1 of Neurotrimin isoform X1 OS=Cricetulus griseus OX=10029 GN=Ntm PE=3 SV=1 CANONICAL=A0A9J7FSD3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3/entry#A0A9J7FVD0-1", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF", "length": 344, "header": "tr|A0A9J7FVD0-1|A0A9J7FVD0_CRIGR Computationally mapped isoform of Neurotrimin isoform X4 OS=Cricetulus griseus OX=10029 GN=Ntm PE=3 SV=1 CANONICAL=A0A9J7FSD3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3/entry#A0A9J7FWQ6-1", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFELNEPTSSTLLQGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF", "length": 356, "header": "tr|A0A9J7FWQ6-1|A0A9J7FWQ6_CRIGR Computationally mapped isoform of Neurotrimin isoform X2 OS=Cricetulus griseus OX=10029 GN=Ntm PE=3 SV=1 CANONICAL=A0A9J7FSD3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3/entry#A0A9J7JNS3-1", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFEVKTTAMTPWKGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF", "length": 355, "header": "tr|A0A9J7JNS3-1|A0A9J7JNS3_CRIGR Computationally mapped isoform of Neurotrimin isoform X3 OS=Cricetulus griseus OX=10029 GN=Ntm PE=3 SV=1 CANONICAL=A0A9J7FSD3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753468", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753468", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": 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305, "end_pos": 307 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FSH4-1", "uniprot_ac": "A0A9J7FSH4", "uniprot_id": "A0A9J7FSH4_CRIGR", "mass": { "chemical_mass": 113876.0, "monoisotopic_mass": 113876.0 }, "refseq": { "ac": "XP_027267610", "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267610" }, "gene_names": [ { "name": "Ccdc15", "type": "recommended", "evidence": [ { "id": "A0A9J7FSH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4" } ] }, { "name": "Ccdc15", "type": "synonym", "evidence": [ { "id": "XP_027267610", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267610" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027267610", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267610" }, { "id": "A0A9J7FSH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027267610.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267610", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267610" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FSH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FSH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755146", "url": "https://www.ncbi.nlm.nih.gov/gene/100755146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755146", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSH4", "url": "https://www.orthodb.org/?gene=A0A9J7FSH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14817:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14817:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267610", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267610", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGGMAPLKKPRNPTKLPLALDPTKSKDVLAVLAERNLPIVPVGAWVEPASPSCSEIPAQTSAYMIEEEIKEQQRRKQESLKHFQRQVRHRVNQQVKLRKKQQLQKSCKAAEKEGSVAMQCSDSAHLTPKRTSVFPSNLNAAMGSYMLSSSQVLGDATEVGENQNHLFEQQAQALSQTMKQARHQLASFKTVSKKKTSVFLNGRRKSSPTQEKALLRKPACIKINKETREEPPCKIHEGPLTTVHYQNFMENQDLGCGEIVTGEKERDLLLGHQQVLLSEDKEKALSKVQKVKFKNPLVVVIKEDEQKQLNLHSLQAVLPESQDYFVEVQGNRPESQSDVIDVLNVEPKASSIEPKAPGVEPITQATGTEFKTTEPEGQALRTEIKGIFKTQTVELDGNIELEAQDHLPPNQAFLSRYKDFLPKCQEQDSLPKDHRGLSKYWNVLPKCQDQNFLPADQVPRNQLALPEEQSHLLKCQNEDLSPEEQSFLPRHQYILPIYQDQRGLHVLPKCQHHDVLSKDQNNLHKYQEQDFPLQNQEVNFKDPFSDKTNGKGREIFFQATYQCLPSKSQVQDFIRDQDMFLKQLSTFVEGEREDEELPLECHQYAPPQVQDQIFHREQYRSCEQTSCDMIDERWRKELYPESYRCGLHEIQDSGSAINQSLHFRQEPSVNTAERCQEDLHLGGCERLPPRHQRGTCNRRQQVSEEYRSGLSTEYQTLLAFQSGVDQEEEKKERQKQYLRHRRLFMDIEREQVKEQNRQREQKKRIERIKKKKEQQRYAEEQRLLRMRCHEEPYSEEKINDALAQLQLEEIKGAREKQHQREKEYIRYVEALRAQVQEKMKLYNITLPPLCCCGPDFWDAHPDTCANNCIFYKNYKAYNRALHSVINSSDISEGIATLRNAIRNFASVHRGTSKKGSVASSCCSPSSFMPVITCPESLSALLRAACTRTAQSWSDPIMIPTISMTPHGAAGVHLTKMTTKSYWELWTTPS", "length": 990, "header": "tr|A0A9J7FSH4-1|A0A9J7FSH4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc15 PE=4 SV=1 CANONICAL=A0A9J7FSH4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4/entry#A0A9J7FSH4-1", "sequence": { "sequence": "MPGGMAPLKKPRNPTKLPLALDPTKSKDVLAVLAERNLPIVPVGAWVEPASPSCSEIPAQTSAYMIEEEIKEQQRRKQESLKHFQRQVRHRVNQQVKLRKKQQLQKSCKAAEKEGSVAMQCSDSAHLTPKRTSVFPSNLNAAMGSYMLSSSQVLGDATEVGENQNHLFEQQAQALSQTMKQARHQLASFKTVSKKKTSVFLNGRRKSSPTQEKALLRKPACIKINKETREEPPCKIHEGPLTTVHYQNFMENQDLGCGEIVTGEKERDLLLGHQQVLLSEDKEKALSKVQKVKFKNPLVVVIKEDEQKQLNLHSLQAVLPESQDYFVEVQGNRPESQSDVIDVLNVEPKASSIEPKAPGVEPITQATGTEFKTTEPEGQALRTEIKGIFKTQTVELDGNIELEAQDHLPPNQAFLSRYKDFLPKCQEQDSLPKDHRGLSKYWNVLPKCQDQNFLPADQVPRNQLALPEEQSHLLKCQNEDLSPEEQSFLPRHQYILPIYQDQRGLHVLPKCQHHDVLSKDQNNLHKYQEQDFPLQNQEVNFKDPFSDKTNGKGREIFFQATYQCLPSKSQVQDFIRDQDMFLKQLSTFVEGEREDEELPLECHQYAPPQVQDQIFHREQYRSCEQTSCDMIDERWRKELYPESYRCGLHEIQDSGSAINQSLHFRQEPSVNTAERCQEDLHLGGCERLPPRHQRGTCNRRQQVSEEYRSGLSTEYQTLLAFQSGVDQEEEKKERQKQYLRHRRLFMDIEREQVKEQNRQREQKKRIERIKKKKEQQRYAEEQRLLRMRCHEEPYSEEKINDALAQLQLEEIKGAREKQHQREKEYIRYVEALRAQVQEKMKLYNITLPPLCCCGPDFWDAHPDTCANNCIFYKNYKAYNRALHSVINSSDISEGIATLRNAIRNFASVHRGTSKKGSVASSCCSPSSFMPVITCPESLSALLRAACTRTAQSWSDPIMIPTISMTPHGAAGVHLTKMTTKSYWELWTTPS", "length": 990, "header": "tr|A0A9J7FSH4-1|A0A9J7FSH4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc15 PE=4 SV=1 CANONICAL=A0A9J7FSH4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755146", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755146", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 659, "end_pos": 661, "annotation": "n_glycosylation_sequon" }, { "start_pos": 844, "end_pos": 846, "annotation": 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"https://www.uniprot.org/uniprotkb/A0A9J7FSJ4/entry#names_and_taxonomy" } ] }, { "name": "von Willebrand factor A domain-containing protein 5A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027267647", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267647" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267647", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267647" } ] }, { "annotation": "May play a role in tumorigenesis as a tumor suppressor. Altered expression of this protein and disruption of the molecular pathway it is involved in may contribute directly to or modify tumorigenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4#function" }, { "database": "UniProtKB", "id": "ARBA00057497", "url": "https://www.uniprot.org/uniprotkb/ARBA00057497#function" }, { "database": "UniProtKB", "id": "A0A9J7FTR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTR5#function" }, { "database": "UniProtKB", "id": "A0A9J7FVR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763569", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4", "locus": {} } ], "crossref": [ { "id": "100763569", "url": "https://www.ncbi.nlm.nih.gov/gene/100763569", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763569", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763569", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSJ4", "url": "https://www.orthodb.org/?gene=A0A9J7FSJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45737", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45737", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45737:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45737:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267647", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267647", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSJ4-1", "url": 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"MNCKTLQKRAVTMEHCCGLITGDKVPVPLKNISVALSIEEFVADVSVALNYENEEEVPVEASFVFPMDEDSAVYSFEALVDDKKIVAELQEKTQAHSSYKNAISQGHQAYLLEEDDYSRDVFSCNIGNLLPGAKVGVTLRYVQELPLETDGALRYVLPAILNPRYQLSEQSENSCLNIQTPMVPSGDLPYTLSMVATITSQHGIERVQSNCSLSPIQYLADDKTSAQISLAEGHKFDRDLELLIYYSEVHSPSVAVEMGMQGMKPDSLMGAPSAMVSFYPDIPEVKSSKACGEFVFLMDRSGSMESPMNNQKNSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSTYEKFFPESVKYTQETMDEAVGRVKDLEADLGGTEILKPLRKIYKAHSIPGHPLQLFVFTDGEVSDTFTVINEVQLNSKKHRCFSFGIGEGASTSLIKGIARVSGGTAEFITGKDRIQTKALGSLKFALNCSMDDFSLSWDLPPGLLVTMLSPEQTVIFRGQRLIMYAQLTGTMPEVECSGEVCLKYTLQGRSLENRVAFPLQPKTNASFAIHRLAAKSLIQTKDLGSHETSKSAKEDILNISIQSGVLSSLTAFIAINKELNQPVQGPLTHRDIPRPVTYTSPCAYKVKTRHKPPVCAKVDVIPFGFICSSPSRRNVESLKEMKKSPSSTKKPNLKNDHKGFGENVFVQLVSLQKANGSWELHEDFAKILGTNLEDIMAANPAKDGDPSAWATVLAVLWLHANGKDLKCEWELLERKAVAWLHAHAGSFIPMLVQAANNILKLPVTPAVFGL", "length": 798, "header": "tr|A0A9J7FSJ4-1|A0A9J7FSJ4_CRIGR Isoform 1 of von Willebrand factor A domain-containing protein 5A OS=Cricetulus griseus OX=10029 GN=LOC100763569 PE=4 SV=1 CANONICAL=A0A9J7FSJ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4/entry#A0A9J7FSJ4-1", "sequence": { "sequence": "MNCKTLQKRAVTMEHCCGLITGDKVPVPLKNISVALSIEEFVADVSVALNYENEEEVPVEASFVFPMDEDSAVYSFEALVDDKKIVAELQEKTQAHSSYKNAISQGHQAYLLEEDDYSRDVFSCNIGNLLPGAKVGVTLRYVQELPLETDGALRYVLPAILNPRYQLSEQSENSCLNIQTPMVPSGDLPYTLSMVATITSQHGIERVQSNCSLSPIQYLADDKTSAQISLAEGHKFDRDLELLIYYSEVHSPSVAVEMGMQGMKPDSLMGAPSAMVSFYPDIPEVKSSKACGEFVFLMDRSGSMESPMNNQKNSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSTYEKFFPESVKYTQETMDEAVGRVKDLEADLGGTEILKPLRKIYKAHSIPGHPLQLFVFTDGEVSDTFTVINEVQLNSKKHRCFSFGIGEGASTSLIKGIARVSGGTAEFITGKDRIQTKALGSLKFALNCSMDDFSLSWDLPPGLLVTMLSPEQTVIFRGQRLIMYAQLTGTMPEVECSGEVCLKYTLQGRSLENRVAFPLQPKTNASFAIHRLAAKSLIQTKDLGSHETSKSAKEDILNISIQSGVLSSLTAFIAINKELNQPVQGPLTHRDIPRPVTYTSPCAYKVKTRHKPPVCAKVDVIPFGFICSSPSRRNVESLKEMKKSPSSTKKPNLKNDHKGFGENVFVQLVSLQKANGSWELHEDFAKILGTNLEDIMAANPAKDGDPSAWATVLAVLWLHANGKDLKCEWELLERKAVAWLHAHAGSFIPMLVQAANNILKLPVTPAVFGL", "length": 798, "header": "tr|A0A9J7FSJ4-1|A0A9J7FSJ4_CRIGR Isoform 1 of von Willebrand factor A domain-containing protein 5A OS=Cricetulus griseus OX=10029 GN=LOC100763569 PE=4 SV=1 CANONICAL=A0A9J7FSJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4/entry#A0A9J7FTR5-1", "sequence": { "sequence": "MNCKTLQKRAVTMEHCCGLITGDKVPVPLKNISVALSIEEFVADVSVALNYENEEEVPVEASFVFPMDEDSAVYSFEALVDDKKIVAELQEKTQAHSSYKNAISQGHQAYLLEEDDYSRDVFSCNIGNLLPGAKVGVTLRYVQELPLETDGALRYVLPAILNPRYQLSEQSENSCLNIQTPMVPSGDLPYTLSMVATITSQHGIERVQSNCSLSPIQYLADDKTSAQISLAEGHKFDRDLELLIYYSEVHSPSVAVEMGMQGMKPDSLMGAPSAMVSFYPDIPEVKSSKACGEFVFLMDRSGSMESPMNNQKNSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSTYEKFFPESVKYTQETMDEAVGRVKDLEADLGGTEILKPLRKIYKAHSIPGHPLQLFVFTDGEVSDTFTVINEVQLNSKKHRCFSFGIGEGASTSLIKGIARVSGGTAEFITGKDRIQTKALGSLKFALNCSMDDFSLSWDLPPGLLVTMLSPEQTVIFRGQRLIMYAQLTGTMPEVECSGEVCLKYTLQGRSLENRVAFPLQPKTNASFAIHRLAAKSLIQTKDLGSHETSKSAKEDILNISIQSGVLSSLTAFIAINKELNQPVQGPLTHRDIPRPVTYTSPCAYKVKTRHKPPVCAKVGFGENVFVQLVSLQKANGSWELHEDFAKILGTNLEDIMAANPAKDGDPSAWATVLAVLWLHANGKDLKCEWELLERKAVAWLHAHAGSFIPMLVQAANNILKLPVTPAVFGL", "length": 758, "header": "tr|A0A9J7FTR5-1|A0A9J7FTR5_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 5A OS=Cricetulus griseus OX=10029 GN=LOC100763569 PE=4 SV=1 CANONICAL=A0A9J7FSJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4/entry#A0A9J7FVR4-1", "sequence": { "sequence": "MEHCCGLITGDKVPVPLKNISVALSIEEFVADVSVALNYENEEEVPVEASFVFPMDEDSAVYSFEALVDDKKIVAELQEKTQAHSSYKNAISQGHQAYLLEEDDYSRDVFSCNIGNLLPGAKVGVTLRYVQELPLETDGALRYVLPAILNPRYQLSEQSENSCLNIQTPMVPSGDLPYTLSMVATITSQHGIERVQSNCSLSPIQYLADDKTSAQISLAEGHKFDRDLELLIYYSEVHSPSVAVEMGMQGMKPDSLMGAPSAMVSFYPDIPEVKSSKACGEFVFLMDRSGSMESPMNNQKNSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSTYEKFFPESVKYTQETMDEAVGRVKDLEADLGGTEILKPLRKIYKAHSIPGHPLQLFVFTDGEVSDTFTVINEVQLNSKKHRCFSFGIGEGASTSLIKGIARVSGGTAEFITGKDRIQTKALGSLKFALNCSMDDFSLSWDLPPGLLVTMLSPEQTVIFRGQRLIMYAQLTGTMPEVECSGEVCLKYTLQGRSLENRVAFPLQPKTNASFAIHRLAAKSLIQTKDLGSHETSKSAKEDILNISIQSGVLSSLTAFIAINKELNQPVQGPLTHRDIPRPVTYTSPCAYKVKTRHKPPVCAKVDVIPFGFICSSPSRRNVESLKEMKKSPSSTKKPNLKNDHKGFGENVFVQLVSLQKANGSWELHEDFAKILGTNLEDIMAANPAKDGDPSAWATVLAVLWLHANGKDLKCEWELLERKAVAWLHAHAGSFIPMLVQAANNILKLPVTPAVFGL", "length": 786, "header": "tr|A0A9J7FVR4-1|A0A9J7FVR4_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 5A OS=Cricetulus griseus OX=10029 GN=LOC100763569 PE=4 SV=1 CANONICAL=A0A9J7FSJ4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 792, "start_aa": "Thr", "end_pos": 792, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr792", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763569", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763569", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" }, { "start_pos": 703, "end_pos": 705, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FSJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4" }, { "id": "PS51468", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51468" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VIT", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 143, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FSJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSJ4" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 293, "end_pos": 474, "start_aa": "Glu", "end_aa": "Leu", 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSK5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 184 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027265257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265257" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265257", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265257" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSK5#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7FUD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD9#function" }, { "database": "UniProtKB", "id": "A0A9J7GVV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVV5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSK5", "url": 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"MAGLSFADSASLHQGHPLLPSTSFRESVTFKDVVVNFTQEEWKHLDPTQRDLFRDVTLENYTHLVSIGLQVSKPDMISQLEQGTEPWIEESCIPVGSMGDWKIRPENSVSPLELDISEQHQSSKAVVNNCKRDDYSFSVVEMWKSDGSLQNLQANQQTLPREIKITEKTAPTCESSFRVSSSLVTQTEVVVEQTSIKTRAKQNSLPIKKEKLCKCNECGKAFTYCSALIRHQRTHTGEKPYKCNECNKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKSFSQRGHFMEHQKIHTGEKPFKCEECEKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCSDCGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHKKIHTGERPYKCNECGRAFNQKIHLTQHKRIHTGAKPYSCPKCGKTFRHCSSLAQHQKTHTEEKAYQCNKCEKTFSQNSHLTQHQQIHTEEKPYKCNECDKSFTQSMHLTEHQSIHTGEKPYNCHECPKTFSQSTYLIQHQKIHSGEKLFGCDDCGKAFRYRSALTKHQRLHPGIAALGTS", "length": 748, "header": "tr|A0A9J7FSK5-1|A0A9J7FSK5_CRIGR Isoform 1 of Zinc finger protein 184 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf184 PE=3 SV=1 CANONICAL=A0A9J7FSK5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSK5-1", "url": 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SV=1 CANONICAL=A0A9J7FSK5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSK5/entry#A0A9J7FUD9-1", "sequence": { "sequence": "MISQLEQGTEPWIEESCIPVGSMGDWKIRPENSVSPLELDISEQHQSSKAVVNNCKRDDYSFSVVEMWKSDGSLQNLQANQQTLPREIKITEKTAPTCESSFRVSSSLVTQTEVVVEQTSIKTRAKQNSLPIKKEKLCKCNECGKAFTYCSALIRHQRTHTGEKPYKCNECNKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKSFSQRGHFMEHQKIHTGEKPFKCEECEKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCSDCGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHKKIHTGERPYKCNECGRAFNQKIHLTQHKRIHTGAKPYSCPKCGKTFRHCSSLAQHQKTHTEEKAYQCNKCEKTFSQNSHLTQHQQIHTEEKPYKCNECDKSFTQSMHLTEHQSIHTGEKPYNCHECPKTFSQSTYLIQHQKIHSGEKLFGCDDCGKAFRYRSALTKHQRLHPGIAALGTS", "length": 673, "header": "tr|A0A9J7FUD9-1|A0A9J7FUD9_CRIGR Computationally mapped isoform of Zinc finger protein 184 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf184 PE=3 SV=1 CANONICAL=A0A9J7FSK5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSK5/entry#A0A9J7GVV5-1", "sequence": { "sequence": "MWKSDGSLQNLQANQQTLPREIKITEKTAPTCESSFRVSSSLVTQTEVVVEQTSIKTRAKQNSLPIKKEKLCKCNECGKAFTYCSALIRHQRTHTGEKPYKCNECNKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKSFSQRGHFMEHQKIHTGEKPFKCEECEKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCSDCGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHKKIHTGERPYKCNECGRAFNQKIHLTQHKRIHTGAKPYSCPKCGKTFRHCSSLAQHQKTHTEEKAYQCNKCEKTFSQNSHLTQHQQIHTEEKPYKCNECDKSFTQSMHLTEHQSIHTGEKPYNCHECPKTFSQSTYLIQHQKIHSGEKLFGCDDCGKAFRYRSALTKHQRLHPGIAALGTS", "length": 607, "header": "tr|A0A9J7GVV5-1|A0A9J7GVV5_CRIGR Computationally mapped isoform of Zinc finger protein 184 isoform X3 OS=Cricetulus griseus OX=10029 GN=Znf184 PE=3 SV=1 CANONICAL=A0A9J7FSK5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265392" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761821", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8", "locus": {} } ], "crossref": [ { "id": "100761821", "url": "https://www.ncbi.nlm.nih.gov/gene/100761821", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761821", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761821", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSR8", "url": "https://www.orthodb.org/?gene=A0A9J7FSR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDSEDPPGSPHFSWGAKMILDSIYCLKQDHTISFGGWLHNYFFXSFFGTTEAFLLAAMAYDRFIAICNPLLYSASMSHWVCGLLVSGSYSWGAVNAVTQTTMTFTLSFCGSNEINDFFCDVLPLLTLSCSETFVNQLVLLGLCGSIIISTFLTGFVSYIYIISTILKICTVQGRQKAFSTCASHLIGMCLFFGTVFFMYAQPSAVSSMEQSKVVSVFYTIVIPMLNLLIYSLRNKDVKQALIRSKQRFST", "length": 251, "header": "tr|A0A9J7FSR8-1|A0A9J7FSR8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100761821 PE=3 SV=1 CANONICAL=A0A9J7FSR8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8/entry#A0A9J7FSR8-1", "sequence": { "sequence": "MTDSEDPPGSPHFSWGAKMILDSIYCLKQDHTISFGGWLHNYFFXSFFGTTEAFLLAAMAYDRFIAICNPLLYSASMSHWVCGLLVSGSYSWGAVNAVTQTTMTFTLSFCGSNEINDFFCDVLPLLTLSCSETFVNQLVLLGLCGSIIISTFLTGFVSYIYIISTILKICTVQGRQKAFSTCASHLIGMCLFFGTVFFMYAQPSAVSSMEQSKVVSVFYTIVIPMLNLLIYSLRNKDVKQALIRSKQRFST", "length": 251, "header": "tr|A0A9J7FSR8-1|A0A9J7FSR8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100761821 PE=3 SV=1 CANONICAL=A0A9J7FSR8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761821", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761821", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSR8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 231, "start_aa": "Phe", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"name": "Nxpe1", "type": "synonym", "evidence": [ { "id": "XP_027267879", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267879" } ] } ], "protein_names": [ { "name": "NXPE family member 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027267879", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267879" }, { "id": "A0A9J7FST3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FST3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267879" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FST3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FST3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nxpe1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FST3", "locus": {} } ], "crossref": [ { "id": "100769997", "url": "https://www.ncbi.nlm.nih.gov/gene/100769997", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769997", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769997", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FST3", "url": "https://www.orthodb.org/?gene=A0A9J7FST3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16165", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16165", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16165:SF3", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267364" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Timm29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FSX0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FSX0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770805", "url": "https://www.ncbi.nlm.nih.gov/gene/100770805", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770805", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770805", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSX0", "url": "https://www.orthodb.org/?gene=A0A9J7FSX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21435:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21435:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267364", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFRWPTDGGKRMATAALKRLGSAGRSEARGEANAAATVAAKPGLWARLGTWTRALLRDYAEACRDAAAAARARPGRAAVYVGLLGGAAACCALAPGEATFEEALLDASGSLLLLAPATRNRHSEAFLQRLLWLRGRGRLRHVNLGLCSLVYEAPFDAQASLYQARCRYLQPRWIDFPGRVLDVGFLGRWWILENRMQDCDINDDEFLHLPAHLRVVGPHQLHSEANERLFEEKYKPIVLTDDQVDQALWEEQVLQKEKKDRLALSEANSLVQAEVSR", "length": 278, "header": "tr|A0A9J7FSX0-1|A0A9J7FSX0_CRIGR Isoform 1 of Mitochondrial import inner membrane translocase subunit Tim29 isoform X2 OS=Cricetulus griseus OX=10029 GN=Timm29 PE=4 SV=1 CANONICAL=A0A9J7FSX0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0/entry#A0A9J7FSX0-1", "sequence": { "sequence": "MLFRWPTDGGKRMATAALKRLGSAGRSEARGEANAAATVAAKPGLWARLGTWTRALLRDYAEACRDAAAAARARPGRAAVYVGLLGGAAACCALAPGEATFEEALLDASGSLLLLAPATRNRHSEAFLQRLLWLRGRGRLRHVNLGLCSLVYEAPFDAQASLYQARCRYLQPRWIDFPGRVLDVGFLGRWWILENRMQDCDINDDEFLHLPAHLRVVGPHQLHSEANERLFEEKYKPIVLTDDQVDQALWEEQVLQKEKKDRLALSEANSLVQAEVSR", "length": 278, "header": "tr|A0A9J7FSX0-1|A0A9J7FSX0_CRIGR Isoform 1 of Mitochondrial import inner membrane translocase subunit Tim29 isoform X2 OS=Cricetulus griseus OX=10029 GN=Timm29 PE=4 SV=1 CANONICAL=A0A9J7FSX0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"id": "GO:0045039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045039", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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{ "ac": "XP_007627337", "name": "UPF0722 protein C11orf88 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627337" }, "gene_names": [ { "name": "Hoatz", "type": "recommended", "evidence": [ { "id": "A0A9J7FSY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3" } ] }, { "name": "Hoatz", "type": "synonym", "evidence": [ { "id": "XP_007627337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627337" } ] } ], "protein_names": [ { "name": "Cilia- and flagella-associated protein HOATZ", "type": "recommended", "evidence": [ { "id": "A0A9J7FSY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3/entry#names_and_taxonomy" } ] }, { "name": "UPF0722 protein C11orf88 homolog", "type": "synonym", "evidence": [ { "id": "XP_007627337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627337" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007627337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627337" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hoatz", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FSY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FSY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754486", "url": "https://www.ncbi.nlm.nih.gov/gene/100754486", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754486", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754486", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TVCSERQ", "url": "https://omabrowser.org/oma/group/TVCSERQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FSY3", "url": "https://www.orthodb.org/?gene=A0A9J7FSY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47231:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47231:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007627337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627337", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METGHKSSSSCRKDTHEICSPGLLVFTGCSEQDANLAKQFWLGASMYPPAESQLVLTRNSSQRLPVARNSKDLVREKNSAWSFPFDQNKETDVFAKVQKIQESEEKAKFLEKAKKRDEIIQLLRKQREERILKELVSLPHKPKAKVPEAKEVSSESDKQEQEEVKALE", "length": 168, "header": "tr|A0A9J7FSY3-1|A0A9J7FSY3_CRIGR Isoform 1 of Cilia- and flagella-associated protein HOATZ OS=Cricetulus griseus OX=10029 GN=Hoatz PE=3 SV=1 CANONICAL=A0A9J7FSY3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3/entry#A0A9J7FSY3-1", "sequence": { "sequence": "METGHKSSSSCRKDTHEICSPGLLVFTGCSEQDANLAKQFWLGASMYPPAESQLVLTRNSSQRLPVARNSKDLVREKNSAWSFPFDQNKETDVFAKVQKIQESEEKAKFLEKAKKRDEIIQLLRKQREERILKELVSLPHKPKAKVPEAKEVSSESDKQEQEEVKALE", "length": 168, "header": "tr|A0A9J7FSY3-1|A0A9J7FSY3_CRIGR Isoform 1 of Cilia- and flagella-associated protein HOATZ OS=Cricetulus griseus OX=10029 GN=Hoatz PE=3 SV=1 CANONICAL=A0A9J7FSY3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754486", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754486", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AAL4-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "Hoatz", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METGPRGCPSVRKEPQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNSKVLVSERNSVKPFPFDHNKEEILFAKAQKVQESEEKANYLQKAKKRDEILQLLRKQREERILKELISLPYKPKAKMPKSEEVLSESDLKDQEEVKALE", "length": 168 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A5PN52-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "hoatz", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEELDEEVLDGLTEVEKLYTVFHGASQEDVAYAKLFWNSLSLQPPIESRLVSSDIRQRLKVAKTPNTTNAAANQAPWSKRNEEIQQDAYLRQKQEEKQRYMEMAKNRDQIIALLKKQRDERIKKEMIAYKHKPKKGKLEEKRLAPKTLSSDVDEDQKEVQKLQ", "length": 164 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1SUZ8-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "HOATZ", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METRPSSGPSSRTESCEICPQGLLVFTGSSDLDANLAKQFWIGASMYPPNESQLVLSRGSSQRLRVARASKSSAPEKSYFQPFFLEKSKNRDGVTETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERISKELVSLPYKPEAKVHKAKKVISESDKKDREEVKALD", "length": 168 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q32P68-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "HOATZ", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METRPSSSLSSPEESCEAFPQGLLVFTGSSDRDANLAKQFWIGASMYPHNESQLVLSRGSSQRLPVARPSRSSAPEKTYFQPFFLEESKSRDVTAETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERILKELISLPHKPKGKVHKAKKVISESDKEDQEEVKALD", "length": 168 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PI97-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "HOATZ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEEVKTLD", "length": 169 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80Y73-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "Hoatz", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METGPRGCPSGRKESQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNSKVVLREKSSVQPFPFDQDKDAIIFAKAQRIQESEERAKYLQKAKTRDEILQLLRKQREERISKELISLPYKPKDKVPKSKEVLSESGLRDQEEVKALE", "length": 168 }, "evidence": [ { "id": "A0A9J7FSY3", "url": "https://omabrowser.org/oma/group/A0A9J7FSY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT04-1", "uniprot_ac": "A0A9J7FT04", "uniprot_id": "A0A9J7FT04_CRIGR", "mass": { "chemical_mass": 37359.0, "monoisotopic_mass": 37359.0 }, "refseq": { "ac": "XP_003509151", "name": "olfactory receptor 7G2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509151" }, "gene_names": [ { "name": "LOC100765072", "type": "recommended", "evidence": [ { "id": "A0A9J7FT04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" } ] }, { "name": "LOC100765072", "type": "synonym", "evidence": [ { "id": "XP_003509151", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509151" } ] } ], "protein_names": [ { "name": "Olfactory receptor 7G2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FT04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 7G2-like", "type": "synonym", "evidence": [ { "id": "XP_003509151", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509151" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614649.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003509151.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509151", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509151" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765072", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT04", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT04", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765072", "url": "https://www.ncbi.nlm.nih.gov/gene/100765072", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765072", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765072", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT04", "url": "https://www.orthodb.org/?gene=A0A9J7FT04", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509151", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509151", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFYCLFSVLIGKMELKNQTAILEFHLIGLTNNHELDPIIYSIFLSIYLVTILGNLIILLAICSDSQLHSPMYFFLSILSINDICLSTSTIPKMLVNIQTQKDTINYIQCISQLFFVSVFSGMENFLLAVMAYDGYVAICKPLRYKVTMNPCCCVLFVLLCLFLSIIDALLHSLMVLHLSFCIDLEIPNFFCELAQILKLSCSDTFINNLLILIAVFIFAGGAFCGVIFSYIYILFSVLRLTSQRGKNKAFSTCTSHLFVVSLFYGTGLGVYLNSSVTDSPRKLAVASVMYTVVPQMLNPFIYSLRNRDIKKSFGKFTGWIFYVLPCVHCHP", "length": 331, "header": "tr|A0A9J7FT04-1|A0A9J7FT04_CRIGR Isoform 1 of Olfactory receptor 7G2-like OS=Cricetulus griseus OX=10029 GN=LOC100765072 PE=3 SV=1 CANONICAL=A0A9J7FT04-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04/entry#A0A9J7FT04-1", "sequence": { "sequence": "MFYCLFSVLIGKMELKNQTAILEFHLIGLTNNHELDPIIYSIFLSIYLVTILGNLIILLAICSDSQLHSPMYFFLSILSINDICLSTSTIPKMLVNIQTQKDTINYIQCISQLFFVSVFSGMENFLLAVMAYDGYVAICKPLRYKVTMNPCCCVLFVLLCLFLSIIDALLHSLMVLHLSFCIDLEIPNFFCELAQILKLSCSDTFINNLLILIAVFIFAGGAFCGVIFSYIYILFSVLRLTSQRGKNKAFSTCTSHLFVVSLFYGTGLGVYLNSSVTDSPRKLAVASVMYTVVPQMLNPFIYSLRNRDIKKSFGKFTGWIFYVLPCVHCHP", "length": 331, "header": "tr|A0A9J7FT04-1|A0A9J7FT04_CRIGR Isoform 1 of Olfactory receptor 7G2-like OS=Cricetulus griseus OX=10029 GN=LOC100765072 PE=3 SV=1 CANONICAL=A0A9J7FT04-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7FT04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FT04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT04" }, { "id": "PS50262", "database": "PROSITE", "url": 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}, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267422", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267422" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772718", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT06", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT06", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21998", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21998", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22003", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22003", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772718", "url": "https://www.ncbi.nlm.nih.gov/gene/100772718", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772718", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772718", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT06", "url": "https://www.orthodb.org/?gene=A0A9J7FT06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267422", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267422", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFDKQHHWSERDILKLLECMKNNIPSDDSGAIIKTPDVLDWDKVAFKDFSGEVCKQKWMQISHNLSKSGTLSELVLEASELIKEPRKTKTVKKHPDFPKRPLTAYLRFYKEQRAKYSKMYPKYNNVQLTKFLAEKYKQLPEEIKEKYIQDFQKEKQDFQEKLIKPRENHPSVERSKKSVVHRNHHTAIPKKSQGDTKHVKTPLKTEIPKTFPPVVKFRGEPKKPPMNGYHKFHQDSWSSQELHHLPLRQRWVEISRRWQRISQNMRELYNIQAEALQKQYWVEMDLWLKGLSPEEYGAYKETRANYGKGKNFAKSRDISANGQPTHQ", "length": 329, "header": "tr|A0A9J7FT06-1|A0A9J7FT06_CRIGR Isoform 1 of Upstream-binding factor 1-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772718 PE=4 SV=1 CANONICAL=A0A9J7FT06-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06/entry#A0A9J7FT06-1", "sequence": { "sequence": "MASFDKQHHWSERDILKLLECMKNNIPSDDSGAIIKTPDVLDWDKVAFKDFSGEVCKQKWMQISHNLSKSGTLSELVLEASELIKEPRKTKTVKKHPDFPKRPLTAYLRFYKEQRAKYSKMYPKYNNVQLTKFLAEKYKQLPEEIKEKYIQDFQKEKQDFQEKLIKPRENHPSVERSKKSVVHRNHHTAIPKKSQGDTKHVKTPLKTEIPKTFPPVVKFRGEPKKPPMNGYHKFHQDSWSSQELHHLPLRQRWVEISRRWQRISQNMRELYNIQAEALQKQYWVEMDLWLKGLSPEEYGAYKETRANYGKGKNFAKSRDISANGQPTHQ", "length": 329, "header": "tr|A0A9J7FT06-1|A0A9J7FT06_CRIGR Isoform 1 of Upstream-binding factor 1-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772718 PE=4 SV=1 CANONICAL=A0A9J7FT06-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772718", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772718", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FT06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT06" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 168, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT25-1", "uniprot_ac": "A0A9J7FT25", "uniprot_id": "A0A9J7FT25_CRIGR", "mass": { "chemical_mass": 127125.0, "monoisotopic_mass": 127125.0 }, "refseq": { "ac": "XP_027266152", "name": "otoancorin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266152" }, "gene_names": [ { "name": "Otoa", "type": "recommended", "evidence": [ { "id": "A0A9J7FT25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25" } ] }, { "name": "Otoa", "type": "synonym", "evidence": [ { "id": "XP_027266152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266152" } ] } ], "protein_names": [ { "name": "Otoancorin isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FT25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25/entry#names_and_taxonomy" } ] }, { "name": "otoancorin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027266152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266152" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266152" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Otoa", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT25", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT25", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760060", "url": "https://www.ncbi.nlm.nih.gov/gene/100760060", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760060", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT25", "url": "https://www.orthodb.org/?gene=A0A9J7FT25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28491", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28491", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1137, "header": "tr|A0A9J7FT25-1|A0A9J7FT25_CRIGR Isoform 1 of Otoancorin isoform X2 OS=Cricetulus griseus OX=10029 GN=Otoa PE=4 SV=1 CANONICAL=A0A9J7FT25-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265651", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265651" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rnf44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30", "locus": {} } ], "crossref": [ { "id": "cd16680", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16680", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750465", "url": "https://www.ncbi.nlm.nih.gov/gene/100750465", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750465", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750465", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT30", "url": "https://www.orthodb.org/?gene=A0A9J7FT30", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46171:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46171:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265651", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265651", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPWALAVTKWPPSAPVGHWRFSTRSSSSPGQLWGSLGHEGPLASPPARDEHFPSQQLLPRPPHLSVEEHRASAPAGRSPRMLHPVAQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPASQPIPGCSTQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYHTYPHLLSSDHYLLHPPPPAPPPQPTHMAPLGQFVSLQSQHPRMSLQRLDNDMDLRGDQHPLGSFTYSTSATGPALSPSMPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPAPPPPPPSYYPSFLPYFLSMLPMSPTTMGPTISLGLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE", "length": 431, "header": "tr|A0A9J7FT30-1|A0A9J7FT30_CRIGR Isoform 1 of RING finger protein 44 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf44 PE=4 SV=1 CANONICAL=A0A9J7FT30-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30/entry#A0A9J7FT30-1", "sequence": { "sequence": "MRPWALAVTKWPPSAPVGHWRFSTRSSSSPGQLWGSLGHEGPLASPPARDEHFPSQQLLPRPPHLSVEEHRASAPAGRSPRMLHPVAQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPASQPIPGCSTQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYHTYPHLLSSDHYLLHPPPPAPPPQPTHMAPLGQFVSLQSQHPRMSLQRLDNDMDLRGDQHPLGSFTYSTSATGPALSPSMPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPAPPPPPPSYYPSFLPYFLSMLPMSPTTMGPTISLGLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE", "length": 431, "header": "tr|A0A9J7FT30-1|A0A9J7FT30_CRIGR Isoform 1 of RING finger protein 44 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf44 PE=4 SV=1 CANONICAL=A0A9J7FT30-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30/entry#A0A9J7JIZ1-1", "sequence": { "sequence": "MLHPVAQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPASQPIPGCSTQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYHTYPHLLSSDHYLLHPPPPAPPPQPTHMAPLGQFVSLQSQHPRMSLQRLDNDMDLRGDQHPLGSFTYSTSATGPALSPSMPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPAPPPPPPSYYPSFLPYFLSMLPMSPTTMGPTISLGLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE", "length": 350, "header": "tr|A0A9J7JIZ1-1|A0A9J7JIZ1_CRIGR Computationally mapped isoform of RING finger protein 44 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rnf44 PE=4 SV=1 CANONICAL=A0A9J7FT30-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750465", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750465", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FT30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT30" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 379, "end_pos": 420, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 413, "end_pos": 415 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT35-1", "uniprot_ac": "A0A9J7FT35", "uniprot_id": "A0A9J7FT35_CRIGR", "mass": { "chemical_mass": 56263.0, "monoisotopic_mass": 56263.0 }, "refseq": { "ac": "XP_007647729", "name": "uncharacterized protein KIAA0895 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647729" }, "gene_names": [ { "name": "Kiaa0895", "type": "recommended", "evidence": [ { "id": "A0A9J7FT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35" } ] }, { "name": "Kiaa0895", "type": "synonym", "evidence": [ { "id": "XP_007647729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647729" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA0895 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA0895 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_007647729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647729" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614607.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647729" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0895", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35", "locus": {} } ], "crossref": [ { "id": "A0A9J7FT35", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FT35", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768942", "url": "https://www.ncbi.nlm.nih.gov/gene/100768942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FT35", "url": "https://www.orthodb.org/?gene=A0A9J7FT35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FT38", "url": "https://www.orthodb.org/?gene=A0A9J7FT38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GU34", "url": "https://www.orthodb.org/?gene=A0A9J7GU34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JK80", "url": "https://www.orthodb.org/?gene=A0A9J7JK80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31817:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31817:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLESIRVTEKLHWPEHELAKKSVLNAEEQLIIDSKRSFSSLSSGVLKDTFTTGTSSYNVLLQTKEERKHHSQKQFSSTFSKRRRKPSKSPSSSNILKDPHRMTALVPVTSTGSSLALPPKPKSKVKCRSVTPLPKPKQQPQLCRSFEKGDDLSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPALPGVLAKYSNASDRFLKQSIKIMELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 489, "header": "tr|A0A9J7FT35-1|A0A9J7FT35_CRIGR Isoform 1 of Uncharacterized protein KIAA0895 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A9J7FT35-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35/entry#A0A9J7FT35-1", "sequence": { "sequence": "MLESIRVTEKLHWPEHELAKKSVLNAEEQLIIDSKRSFSSLSSGVLKDTFTTGTSSYNVLLQTKEERKHHSQKQFSSTFSKRRRKPSKSPSSSNILKDPHRMTALVPVTSTGSSLALPPKPKSKVKCRSVTPLPKPKQQPQLCRSFEKGDDLSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPALPGVLAKYSNASDRFLKQSIKIMELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 489, "header": "tr|A0A9J7FT35-1|A0A9J7FT35_CRIGR Isoform 1 of Uncharacterized protein KIAA0895 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A9J7FT35-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FT38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35/entry#A0A9J7FT38-1", "sequence": { "sequence": "MELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 275, "header": "tr|A0A9J7FT38-1|A0A9J7FT38_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0895 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A9J7FT35-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35/entry#A0A9J7GU34-1", "sequence": { "sequence": 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"MTALVPVTSTGTWYCLDRQSAVFIGNSVPSPLKFTHDISVTGSSLALPPKPKSKVKCRSVTPLPKPKQQPQLCRSFEKGDDLSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPALPGVLAKYSNASDRFLKQSIKIMELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 419, "header": "tr|A0A9J7JK80-1|A0A9J7JK80_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0895 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A9J7FT35-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "name": "carboxypeptidase activity", "id": "GO:0004180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004180", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 202, "end_pos": 204 }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FT43-1", "uniprot_ac": "A0A9J7FT43", "uniprot_id": "A0A9J7FT43_CRIGR", "mass": { "chemical_mass": 22766.0, "monoisotopic_mass": 22766.0 }, "refseq": { "ac": "XP_027267192", "name": "LOW QUALITY PROTEIN: protein ripply2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267192" }, "gene_names": [ { "name": "Ripply2", "type": "recommended", "evidence": [ { "id": "A0A9J7FT43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43" } ] }, { "name": "Ripply2", "type": "synonym", "evidence": [ { "id": "XP_027267192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267192" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: protein ripply2", "type": "synonym", "evidence": [ { "id": "XP_027267192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267192" }, { "id": "A0A9J7FT43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027267192.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267192", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267192" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FT43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ripply2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43", "locus": {} } ], "crossref": [ { "id": "100761028", "url": "https://www.ncbi.nlm.nih.gov/gene/100761028", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761028", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761028", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FT43", "url": "https://www.orthodb.org/?gene=A0A9J7FT43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16770:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16770:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14998", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14998", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267192", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267192", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FT43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FT43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPAESTERAHSPARPPPRSLCPPPPEQPGYLSARIHPRTLVPCPPPLEPEDRLPPAHPHAPSTSALALCPLPLPVPSVRAPFXLCAVARLTFFMRGLRLPSCRSEDFWRPWLRTPGEKEEREEHQAAEALPSGPGVTEASGKLSQYRHPVRLFWPKSKCYDYLYQEAETLLKNFPIQATISFYEDSDSEDEIEGLPCENQSN", "length": 203, "header": "tr|A0A9J7FT43-1|A0A9J7FT43_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein ripply2 OS=Cricetulus griseus OX=10029 GN=Ripply2 PE=3 SV=1 CANONICAL=A0A9J7FT43-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FT43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FT43/entry#A0A9J7FT43-1", "sequence": { "sequence": "MDPAESTERAHSPARPPPRSLCPPPPEQPGYLSARIHPRTLVPCPPPLEPEDRLPPAHPHAPSTSALALCPLPLPVPSVRAPFXLCAVARLTFFMRGLRLPSCRSEDFWRPWLRTPGEKEEREEHQAAEALPSGPGVTEASGKLSQYRHPVRLFWPKSKCYDYLYQEAETLLKNFPIQATISFYEDSDSEDEIEGLPCENQSN", "length": 203, "header": "tr|A0A9J7FT43-1|A0A9J7FT43_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein ripply2 OS=Cricetulus griseus OX=10029 GN=Ripply2 PE=3 SV=1 CANONICAL=A0A9J7FT43-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267639" } ] }, { "annotation": "May play a role in tumorigenesis as a tumor suppressor. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTB7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027265029.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265029", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265029" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760759", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FTD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FTD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760759", "url": "https://www.ncbi.nlm.nih.gov/gene/100760759", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760759", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760759", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTD9", "url": "https://www.orthodb.org/?gene=A0A9J7FTD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829:SF372", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829:SF372", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265029", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265029", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGFCDGLGSCSVPHSLTRAVAHPPGYGRGDLGSGRRLWVNSASLSPATYTAGPGPASSYAAAALATPGSLLGAAGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVASNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRGETSVATVPGASSPEGATLEPRGSASQDTQTSRPPPEPEVTPCLSGFSTAVGALAGGLSTLPEGLVRDFHFRRPPSTAAHSSQIPNAAQGFAAGHQTMATCFRVGHLVYSQEGTEV", "length": 311, "header": "tr|A0A9J7FTD9-1|A0A9J7FTD9_CRIGR Isoform 1 of Forkhead box protein I2 OS=Cricetulus griseus OX=10029 GN=LOC100760759 PE=4 SV=1 CANONICAL=A0A9J7FTD9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9/entry#A0A9J7FTD9-1", "sequence": { "sequence": "MAGFCDGLGSCSVPHSLTRAVAHPPGYGRGDLGSGRRLWVNSASLSPATYTAGPGPASSYAAAALATPGSLLGAAGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVASNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRGETSVATVPGASSPEGATLEPRGSASQDTQTSRPPPEPEVTPCLSGFSTAVGALAGGLSTLPEGLVRDFHFRRPPSTAAHSSQIPNAAQGFAAGHQTMATCFRVGHLVYSQEGTEV", "length": 311, "header": "tr|A0A9J7FTD9-1|A0A9J7FTD9_CRIGR Isoform 1 of Forkhead box protein I2 OS=Cricetulus griseus OX=10029 GN=LOC100760759 PE=4 SV=1 CANONICAL=A0A9J7FTD9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 67, "start_aa": "Thr", "end_pos": 67, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "pmid": "" }, { "name": "anatomical structure morphogenesis", "id": "GO:0009653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009653", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTD9" } ], "pmid": "" }, { "name": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268276", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268276" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cmss1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVI0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757899", "url": "https://www.ncbi.nlm.nih.gov/gene/100757899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", 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"categories": [ "Protein" ] }, { "id": "A0A9J7FWD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP91-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPGVLAANANSSDALCGPSKTWIWTELNQRASSLQKPSGDEEGRDTEMMQQDTAPVPEPSQETKQVTVTPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 315, "header": "tr|A0A9J7FVI0-1|A0A9J7FVI0_CRIGR Isoform 1 of Protein CMSS1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FTE4-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPGVLAANANSSDALCGPSKTWIWTELNQRASSLQKPSGDEEGRDTEMMQQDTAPVPEPSQETKQPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 311, "header": "tr|A0A9J7FTE4-1|A0A9J7FVI0_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FUL2-1", "sequence": { "sequence": "MQKQSSVSFGEPSGDEEGRDTEMMQQDTAPVPEPSQETKQPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 268, "header": "tr|A0A9J7FUL2-1|A0A9J7FUL2_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FVI0-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPGVLAANANSSDALCGPSKTWIWTELNQRASSLQKPSGDEEGRDTEMMQQDTAPVPEPSQETKQVTVTPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 315, "header": "tr|A0A9J7FVI0-1|A0A9J7FVI0_CRIGR Isoform 1 of Protein CMSS1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FWD1-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPEPSGDEEGRDTEMMQQDTAPVPEPSQETKQVTVTPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 282, "header": "tr|A0A9J7FWD1-1|A0A9J7FWD1_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FWK4-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPEPSGDEEGRDTEMMQQDTAPVPEPSQETKQPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 278, "header": "tr|A0A9J7FWK4-1|A0A9J7FWK4_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7FXP6-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPARLNKDFIIRVLWRRPSSRNSSGPKPSGDEEGRDTEMMQQDTAPVPEPSQETKQVTVTPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 306, "header": "tr|A0A9J7FXP6-1|A0A9J7FXP6_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JP91-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0/entry#A0A9J7JP91-1", "sequence": { "sequence": "MADDLGDEWWESQPAAAGSPARLNKDFIIRVLWRRPSSRNSSGPKPSGDEEGRDTEMMQQDTAPVPEPSQETKQPMECFLTQAKETKEETRKTKKWKKKKISEILAKSEPKPGTPGDLQQLIKDHYSGSRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHSEKKSVLMLIMCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVREQVKFLENRVIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSESLKLGLF", "length": 302, "header": "tr|A0A9J7JP91-1|A0A9J7JP91_CRIGR Computationally mapped isoform of Protein CMSS1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cmss1 PE=4 SV=1 CANONICAL=A0A9J7FVI0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTE4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757899", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FTF3-1", "uniprot_ac": "A0A9J7FTF3", "uniprot_id": "A0A9J7FTF3_CRIGR", "mass": { "chemical_mass": 49155.0, "monoisotopic_mass": 49155.0 }, "refseq": { "ac": "XP_027267420", "name": "upstream-binding factor 1-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267420" }, "gene_names": [ { "name": "LOC113835264", "type": "recommended", "evidence": [ { "id": "A0A9J7FTF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ] }, { "name": "LOC113835264", "type": "synonym", "evidence": [ { "id": "XP_027267420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267420" } ] } ], "protein_names": [ { "name": "Upstream-binding factor 1-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A9J7FTF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3/entry#names_and_taxonomy" } ] }, { "name": "upstream-binding factor 1-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_027267420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267420" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267420", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267420" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835264", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FTF3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FTF3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21998", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21998", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22003", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22003", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113835264", "url": "https://www.ncbi.nlm.nih.gov/gene/113835264", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835264", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835264", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTF3", "url": "https://www.orthodb.org/?gene=A0A9J7FTF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267420", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267420", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFDKQHHWSERDILKLLEYMKNNIPSDDSGAIIKTPDDLDWDKVAFKDFSGEVCKQKWMQISHNLSKSGTLSELVLEASELIKEPRKTKTVKKHPDFPKRPLTAYLRFYKEQRAKYSKMYPKYNNVQLTKFLAEKYKQLPEEIKEKYIQDFQKEKQDFQEKLSKFRETYSSVEHSKKSVMPRNHQTAGSKKSQGDRKRVKSPPKTEIPKTFPPVVKFRGEPKKPPMNGYHKFHQDSWSSQELHHLPLRQRWVEISRRWQRISQNMREQYNIHAEALQKQYWVEMELWLKGLSPEEYSAYKETRANYGKGKNFANSRDISAKGQPTHQQTTAAKEMQVRSEEMQGLLAPRGDSRKTIQSHDGDSHEIRKNVMEDSSSSSDSSSSSDSSSSSDSSSSSDSSSSSDSSSYSDTSSTDEGEDNGHLP", "length": 425, "header": "tr|A0A9J7FTF3-1|A0A9J7FTF3_CRIGR Isoform 1 of Upstream-binding factor 1-like protein 1 OS=Cricetulus griseus OX=10029 GN=LOC113835264 PE=4 SV=1 CANONICAL=A0A9J7FTF3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3/entry#A0A9J7FTF3-1", "sequence": { "sequence": "MASFDKQHHWSERDILKLLEYMKNNIPSDDSGAIIKTPDDLDWDKVAFKDFSGEVCKQKWMQISHNLSKSGTLSELVLEASELIKEPRKTKTVKKHPDFPKRPLTAYLRFYKEQRAKYSKMYPKYNNVQLTKFLAEKYKQLPEEIKEKYIQDFQKEKQDFQEKLSKFRETYSSVEHSKKSVMPRNHQTAGSKKSQGDRKRVKSPPKTEIPKTFPPVVKFRGEPKKPPMNGYHKFHQDSWSSQELHHLPLRQRWVEISRRWQRISQNMREQYNIHAEALQKQYWVEMELWLKGLSPEEYSAYKETRANYGKGKNFANSRDISAKGQPTHQQTTAAKEMQVRSEEMQGLLAPRGDSRKTIQSHDGDSHEIRKNVMEDSSSSSDSSSSSDSSSSSDSSSSSDSSSSSDSSSYSDTSSTDEGEDNGHLP", "length": 425, "header": "tr|A0A9J7FTF3-1|A0A9J7FTF3_CRIGR Isoform 1 of Upstream-binding factor 1-like protein 1 OS=Cricetulus griseus OX=10029 GN=LOC113835264 PE=4 SV=1 CANONICAL=A0A9J7FTF3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835264", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835264", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FTF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTF3" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 168, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FTI9-1", "uniprot_ac": "A0A9J7FTI9", "uniprot_id": "A0A9J7FTI9_CRIGR", "mass": { "chemical_mass": 193068.0, "monoisotopic_mass": 193068.0 }, "refseq": { "ac": "XP_027266120", "name": "LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266120" }, "gene_names": [ { "name": "LOC100767045", "type": "recommended", "evidence": [ { "id": "A0A9J7FTI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9" } ] }, { "name": "LOC100767045", "type": "synonym", "evidence": [ { "id": "XP_027266120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266120" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027266120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266120" }, { "id": "A0A9J7FTI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266120" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9", "locus": {} } ], "crossref": [ { "id": "cd03263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767045", "url": "https://www.ncbi.nlm.nih.gov/gene/100767045", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767045", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767045", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTI9", "url": "https://www.orthodb.org/?gene=A0A9J7FTI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19229:SF101", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19229:SF101", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12698", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12698", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26955", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26955", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 13% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027266686.1. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614251.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506563", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506563" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTV3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTV3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gcm2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTV3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FTV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FTV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761954", "url": "https://www.ncbi.nlm.nih.gov/gene/100761954", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761954", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761954", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTV3", "url": "https://www.orthodb.org/?gene=A0A9J7FTV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12414", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12414", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12414:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12414:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506563", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506563", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTV3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGDPTQDADSVLSYGMKLTWDINDPQMPQEPTHFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCASACALQDGSHLQLRPAICDKARLKQQKKVCPNCHSALELVPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSSFKRQMASFYQPQKRSSREPEIRSTQDCSGNLNSMPAPEATELLDMTVDSSLPITGQPCPSFPNSDVHRVTYDLATFQEDAMLTFQNYSNPRVYLPRPPWSYELAGPVGTGSSPYPTLHKDSSSVPDDTDWVHLNSLQYNVSSYGSYERSLDFTAKYHGWKPTHRKPGLEERVDYGQCQAVTTCPYYNPELPCRYLPVPPAGTQALQTVITTTVAYQAYQHPAQKHSDSMKEVSSLASCTYASENLPMPIYPQALGPPDAATQAASPPERAPMKLPGDCQVLRPTLAFPQETDPFRTDGADAWDVCLSGVDSVTGYLDRTGQPFNFDSEDF", "length": 504, "header": "tr|A0A9J7FTV3-1|A0A9J7FTV3_CRIGR Isoform 1 of Chorion-specific transcription factor GCMb OS=Cricetulus griseus OX=10029 GN=Gcm2 PE=4 SV=1 CANONICAL=A0A9J7FTV3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTV3/entry#A0A9J7FTV3-1", "sequence": { "sequence": "MPGDPTQDADSVLSYGMKLTWDINDPQMPQEPTHFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCASACALQDGSHLQLRPAICDKARLKQQKKVCPNCHSALELVPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSSFKRQMASFYQPQKRSSREPEIRSTQDCSGNLNSMPAPEATELLDMTVDSSLPITGQPCPSFPNSDVHRVTYDLATFQEDAMLTFQNYSNPRVYLPRPPWSYELAGPVGTGSSPYPTLHKDSSSVPDDTDWVHLNSLQYNVSSYGSYERSLDFTAKYHGWKPTHRKPGLEERVDYGQCQAVTTCPYYNPELPCRYLPVPPAGTQALQTVITTTVAYQAYQHPAQKHSDSMKEVSSLASCTYASENLPMPIYPQALGPPDAATQAASPPERAPMKLPGDCQVLRPTLAFPQETDPFRTDGADAWDVCLSGVDSVTGYLDRTGQPFNFDSEDF", "length": 504, "header": "tr|A0A9J7FTV3-1|A0A9J7FTV3_CRIGR Isoform 1 of Chorion-specific transcription factor GCMb OS=Cricetulus griseus OX=10029 GN=Gcm2 PE=4 SV=1 CANONICAL=A0A9J7FTV3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514596" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770886", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTY3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FTY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FTY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15406", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15406", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770886", "url": "https://www.ncbi.nlm.nih.gov/gene/100770886", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770886", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770886", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTY3", "url": "https://www.orthodb.org/?gene=A0A9J7FTY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514596", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPGNHSALFFLEGLTDQPGFQIPLFSLFLLIYVVSMAGNVGLVFLIRIIPQLHTPMYYFLSNLSFIDLCYSSVIIPKMLVNFVSEKNSTSFPECMTQLFLFSFFGIDDSYMLTVMAYDRYVAICNPLLYNVIMSRRVCVLLSTAVYALGAFGATVHTSYISSRSFCGTNIIHHYFCDILPLLNIACSRDYTKEFWVMMLVGFNVFASVLAVFISYAFILASILRIRSVDGRSKAFSTCSSHLAAVGVFYGSIIFMYFKPATGDTTQEKVASVFYTTVIPMLNPLIYSLRNKDVKEAIRKLSSGLLSQSV", "length": 310, "header": "tr|A0A9J7FTY3-1|A0A9J7FTY3_CRIGR Isoform 1 of Olfactory receptor 8D1 OS=Cricetulus griseus OX=10029 GN=LOC100770886 PE=3 SV=1 CANONICAL=A0A9J7FTY3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTY3/entry#A0A9J7FTY3-1", "sequence": { "sequence": "MSPGNHSALFFLEGLTDQPGFQIPLFSLFLLIYVVSMAGNVGLVFLIRIIPQLHTPMYYFLSNLSFIDLCYSSVIIPKMLVNFVSEKNSTSFPECMTQLFLFSFFGIDDSYMLTVMAYDRYVAICNPLLYNVIMSRRVCVLLSTAVYALGAFGATVHTSYISSRSFCGTNIIHHYFCDILPLLNIACSRDYTKEFWVMMLVGFNVFASVLAVFISYAFILASILRIRSVDGRSKAFSTCSSHLAAVGVFYGSIIFMYFKPATGDTTQEKVASVFYTTVIPMLNPLIYSLRNKDVKEAIRKLSSGLLSQSV", "length": 310, "header": "tr|A0A9J7FTY3-1|A0A9J7FTY3_CRIGR Isoform 1 of Olfactory receptor 8D1 OS=Cricetulus griseus OX=10029 GN=LOC100770886 PE=3 SV=1 CANONICAL=A0A9J7FTY3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027266367" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266367", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266367" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTZ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763769", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTZ8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FTZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FTZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763769", "url": "https://www.ncbi.nlm.nih.gov/gene/100763769", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763769", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763769", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FTZ8", "url": "https://www.orthodb.org/?gene=A0A9J7FTZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266367", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266367", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSYLLFLSSHIVGDLRVNSNTADFETNIIVVNGRNNTEISFCNIMSYTMIWLSLIIGLIGLVGNAVVLWLLGFHMQRNGFSVYILNLAGADFLFMCFQIVNCIHIILDTFYSNIIGTPLFYFVVLNFAYLCGLSMLSAISTERCLSAIWPIWYRCQRPRYTSAVICTLLWALSLLLSFLEGKECGLIFDSLGPGWCQSFDLITATWLIILFVVLLGSSLALVLTIFCGSHRIPVTKLYVTIVCTVLVFLFFGLPYGIYWFLLSWIENFNYLVPCYFFPTTIFLSCFNSCANPIIYFLVGCIRFHRRFQRNTLKILLQRALQDTPEEEDCRVGASSGRPREMKTDML", "length": 347, "header": "tr|A0A9J7FTZ8-1|A0A9J7FTZ8_CRIGR Isoform 1 of Mas-related G-protein coupled receptor member X2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763769 PE=4 SV=1 CANONICAL=A0A9J7FTZ8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTZ8/entry#A0A9J7FTZ8-1", "sequence": { "sequence": "MCSYLLFLSSHIVGDLRVNSNTADFETNIIVVNGRNNTEISFCNIMSYTMIWLSLIIGLIGLVGNAVVLWLLGFHMQRNGFSVYILNLAGADFLFMCFQIVNCIHIILDTFYSNIIGTPLFYFVVLNFAYLCGLSMLSAISTERCLSAIWPIWYRCQRPRYTSAVICTLLWALSLLLSFLEGKECGLIFDSLGPGWCQSFDLITATWLIILFVVLLGSSLALVLTIFCGSHRIPVTKLYVTIVCTVLVFLFFGLPYGIYWFLLSWIENFNYLVPCYFFPTTIFLSCFNSCANPIIYFLVGCIRFHRRFQRNTLKILLQRALQDTPEEEDCRVGASSGRPREMKTDML", "length": 347, "header": "tr|A0A9J7FTZ8-1|A0A9J7FTZ8_CRIGR Isoform 1 of Mas-related G-protein coupled receptor member X2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763769 PE=4 SV=1 CANONICAL=A0A9J7FTZ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268244", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268244" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Crybg3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47", "locus": {} } ], "crossref": [ { "id": "cd23463", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23463", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752646", "url": "https://www.ncbi.nlm.nih.gov/gene/100752646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752646", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FU47", "url": "https://www.orthodb.org/?gene=A0A9J7FU47", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268244", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268244", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8R9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGGRRRGSAPWHSFSRFFAPRNPSRDKEEEEEEKPGTGQPTGASRGAASVENEPMSTSQKKGNALPSEGVKIPQGEDRRNQADQPAILPMLDDPPKPNDLSNSTSDAKTGESERQPKESFFQFLGNLFNISGKSSLGEVKQSSFKDDQEKSEKDPQTPSGPPEEGIHREKEITGCPVRIQVLPVEEQESNSSELSDAFSLDTTQDSEQETTDTLKKDTVGKAEKPSVTYATYRGPTHIRKYLKQQTVLETVNHLDREDESSDSSPHTHIGSRSIMDTVMAPLSSASKEVATKGCLLGGPLEVSGYSQINLNMESHLENNPELQNIASSKTVVDKNSYGGSRRSCASPSSVSNPSYVVGKSDSQTESSLVCSSLFGGSKSSQVPCPEFQRETATENTLRETSSMISDGMSMSREGHVGPQRPAVSDFCGKSDGSDSTKVESTNLSSPNKSIRHEDTLLPESKCCDKPAADNPSRRNVSHTSITALQGHAVTDSKLVNEGKKLPAQDSQKNVVSEIMLEAVGASGVEPTTLSNIRAPEDKFESLPKDTEPLCETETKRLGLVLHVKTHSGGKNQEDPGSVKYSSDSAVVAKLESETAPNVNFEPNRNPTSDSPLHIENPQKAKVFPDAKTAPNLDCKTADCRTSPPTFVSEMDMLCKLDFPGLRRERALSSKTGQGNIHSLSECQDVGNHSEAADRETHALCLGHASVITEAKETVPDRCRFPLGPGTIGTHLAGVDLSDLEHGGISEDHKSVPSHGCKKAESSSTKASSTSEKSDSLSLETQTAKMLLQVEADAQSSFPIALNSGKGKALSKLPVSQAEPRDISQDKLAFSQLTVAGKLTKTVLSELNSLEIEKDKNGQSMDHKEMKEMCLGGGFEKNHRVGVSCASQYHSVQESEVDTQDNPASLLKSSQPGIVPLGPEEESTGHMAQNCKASMCVISPSLAICRTRKSSSISEMEEPSSDNISPKFQETDSTQVYSSFLGSDACLEKSVFTSEDGSSLSVPSLLGPEGEASSHRENANFLRAGPGAASSSSCHSKEYSTAAVNPHALPSHFDSLKVTVNLTCEGASVTDRLGHKSAYLELETPSPKGAEVTPCHGCLGSQTEKVSLAFPTTACFDNPMKAETGTVAGAPVSVNSSCQQCSEASADLQTEARRRAHDQLLLKSGLLSKADRLLEEIFSSVREELKSKHTVGTCQEHPAKDYVMNPGTVKEDIPSEVALTGIQPEEHVDEKSVENMSEVQEEEKDSVSPAVGETSLLLDFDRVNFSSLLEDQTTELVNEVIFAVQENLTSDIENTWASEPQANTAEILNSGGIKPHDIVREFLVSEQAVNQSTCEISDNKISGKFSSSSISDLVSSTKSIKGREIVAYQQPPSFRSGAGQSDIINLQKSETVSRAEDLLHTRLDDGAKPHLFVSEYCKRAAETECVDNHKMATRDARTLALSFNLPLFASDDTHMPGTSKSSLSDSLVCVSEKSLSGHSKSTPLAMADLGKAHKKDNEVSAGKIALIPSMLEMGNISKRDAELNIMKHEAAPLMSHKEKACKKDAELNTTKAEPEAGILTRGGVYQMDAQVHVEKPEELPATLGMEKAHKMDREGDTGKPEVMPAVSEMKTTHQKDAEGDIVKTEVTPVSMEMGNIYQKHAVGDVGSTGVAAVMSEVETIYQKDGEGIPSKEEVTSVALGTEDTYQKDEESDVAKTDVVGVAPVELETGDICPSDAEGDADGAEGTLILLEGGNIYSKDTDRLSGTTDRPVLEMESTYQTDAEDDLRKAESVAFVLDMKDTHLRAMHSSVDILGERVQRDLEQSNGTTERVPSKIEMEVTAPEGSSGCIENPEVSLPEVAVEKFNGTTAEVTMTPMEVMLAALESEKGPQEYMEKSGEETEEQPSERKEGLILHDDRLASHFRGYESPTLSKDYEGYPALAIPDFQEEDTGVGFHQIKSVTTVCSKERDVDYSDEKEETNLAFISQDEPENLSFTILYEEPLQEEDKYAGTELRETRSVVFPDTSSSSMPGLACERSESRTDLVHHFEKEGKLGEAFDGDNSEMFLSVEAKRYKIYPLALSPIYEDDSSQEDVLSSEVSPGHHGSTKSRESANQPSSVLSLLQSVSERLQRNFDGDDRQVAEDEDEEAAAASGKGLRVERRERVTFHLADPSITFYPDDEQESAGISKPYEECSEPTTSNLQLGLWPEKVSLLQKSDLTSKLHSSLKSAYHQYLQTSRTHSLETGTRFVSTFQEPVSKYFRVQDQASRLSPYIENVDIQALRCNPRPGKMIIYDLHGSKYKQEVYGNVPDATTWSFPNGALIKVVRGCWILYEKPHFQGQKCVLEEGEKVLNRDWLHQNKKHPERNFVMGSIKRVLKDCIVPEIELCPQSDPGCCPVYIHRAVRNLEELNIPKSASYTVKSGVWLAYPEINFKGQATILEEDQGLFEISAAEMKSLHPLQMGGLKVEMPMNLKVILYEKSHFRGHTKEFSEHVDSVPKVLKIDKDFRGIGSIRVIGGVWVAYEKEHFKGQQFLLEEGDFEDCSACGALNGPIMSFRYLQANFIESAITLFESDLESGKFIDITNQEISDLEEIGFGRETRSIHVKSGVWVAYCQKFFCGDQYILEKGKYKCFFDWGGSSNTILSIRPIQLEPLGINEPPHLLKAFSKPGFQGECIDFIKECADLTSFLPSSFKVLRGCWLLYYQEDVFYHQCVLEEGLYVDLASCGCPSARVRALKPIDYVFEEPSISLFALEHCEGRELLLEDAVNSVLNKDLHFYTQSVWIKSGLWIAYEGSNFLGRQILLMPNEIPNWTAFSGWKTIGSVRPMKQPAVYIRIRNRAQDEYLTVTGNLADARTMSVCISPYSGKDTQIWHYCRGLFKSKASDTCLDVIGGRDTPGAKVALWTEHGQFRQKWRLNRNGTISSYLSDELVLDVKGGDYYDKTYVIVNQPLEGEETQKWDIEIL", "length": 2943, "header": "tr|A0A9J7FU47-1|A0A9J7FU47_CRIGR Isoform 1 of Very large A-kinase anchor protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Crybg3 PE=3 SV=1 CANONICAL=A0A9J7FU47-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FU47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47/entry#A0A9J7FU47-1", "sequence": { "sequence": "MSGGRRRGSAPWHSFSRFFAPRNPSRDKEEEEEEKPGTGQPTGASRGAASVENEPMSTSQKKGNALPSEGVKIPQGEDRRNQADQPAILPMLDDPPKPNDLSNSTSDAKTGESERQPKESFFQFLGNLFNISGKSSLGEVKQSSFKDDQEKSEKDPQTPSGPPEEGIHREKEITGCPVRIQVLPVEEQESNSSELSDAFSLDTTQDSEQETTDTLKKDTVGKAEKPSVTYATYRGPTHIRKYLKQQTVLETVNHLDREDESSDSSPHTHIGSRSIMDTVMAPLSSASKEVATKGCLLGGPLEVSGYSQINLNMESHLENNPELQNIASSKTVVDKNSYGGSRRSCASPSSVSNPSYVVGKSDSQTESSLVCSSLFGGSKSSQVPCPEFQRETATENTLRETSSMISDGMSMSREGHVGPQRPAVSDFCGKSDGSDSTKVESTNLSSPNKSIRHEDTLLPESKCCDKPAADNPSRRNVSHTSITALQGHAVTDSKLVNEGKKLPAQDSQKNVVSEIMLEAVGASGVEPTTLSNIRAPEDKFESLPKDTEPLCETETKRLGLVLHVKTHSGGKNQEDPGSVKYSSDSAVVAKLESETAPNVNFEPNRNPTSDSPLHIENPQKAKVFPDAKTAPNLDCKTADCRTSPPTFVSEMDMLCKLDFPGLRRERALSSKTGQGNIHSLSECQDVGNHSEAADRETHALCLGHASVITEAKETVPDRCRFPLGPGTIGTHLAGVDLSDLEHGGISEDHKSVPSHGCKKAESSSTKASSTSEKSDSLSLETQTAKMLLQVEADAQSSFPIALNSGKGKALSKLPVSQAEPRDISQDKLAFSQLTVAGKLTKTVLSELNSLEIEKDKNGQSMDHKEMKEMCLGGGFEKNHRVGVSCASQYHSVQESEVDTQDNPASLLKSSQPGIVPLGPEEESTGHMAQNCKASMCVISPSLAICRTRKSSSISEMEEPSSDNISPKFQETDSTQVYSSFLGSDACLEKSVFTSEDGSSLSVPSLLGPEGEASSHRENANFLRAGPGAASSSSCHSKEYSTAAVNPHALPSHFDSLKVTVNLTCEGASVTDRLGHKSAYLELETPSPKGAEVTPCHGCLGSQTEKVSLAFPTTACFDNPMKAETGTVAGAPVSVNSSCQQCSEASADLQTEARRRAHDQLLLKSGLLSKADRLLEEIFSSVREELKSKHTVGTCQEHPAKDYVMNPGTVKEDIPSEVALTGIQPEEHVDEKSVENMSEVQEEEKDSVSPAVGETSLLLDFDRVNFSSLLEDQTTELVNEVIFAVQENLTSDIENTWASEPQANTAEILNSGGIKPHDIVREFLVSEQAVNQSTCEISDNKISGKFSSSSISDLVSSTKSIKGREIVAYQQPPSFRSGAGQSDIINLQKSETVSRAEDLLHTRLDDGAKPHLFVSEYCKRAAETECVDNHKMATRDARTLALSFNLPLFASDDTHMPGTSKSSLSDSLVCVSEKSLSGHSKSTPLAMADLGKAHKKDNEVSAGKIALIPSMLEMGNISKRDAELNIMKHEAAPLMSHKEKACKKDAELNTTKAEPEAGILTRGGVYQMDAQVHVEKPEELPATLGMEKAHKMDREGDTGKPEVMPAVSEMKTTHQKDAEGDIVKTEVTPVSMEMGNIYQKHAVGDVGSTGVAAVMSEVETIYQKDGEGIPSKEEVTSVALGTEDTYQKDEESDVAKTDVVGVAPVELETGDICPSDAEGDADGAEGTLILLEGGNIYSKDTDRLSGTTDRPVLEMESTYQTDAEDDLRKAESVAFVLDMKDTHLRAMHSSVDILGERVQRDLEQSNGTTERVPSKIEMEVTAPEGSSGCIENPEVSLPEVAVEKFNGTTAEVTMTPMEVMLAALESEKGPQEYMEKSGEETEEQPSERKEGLILHDDRLASHFRGYESPTLSKDYEGYPALAIPDFQEEDTGVGFHQIKSVTTVCSKERDVDYSDEKEETNLAFISQDEPENLSFTILYEEPLQEEDKYAGTELRETRSVVFPDTSSSSMPGLACERSESRTDLVHHFEKEGKLGEAFDGDNSEMFLSVEAKRYKIYPLALSPIYEDDSSQEDVLSSEVSPGHHGSTKSRESANQPSSVLSLLQSVSERLQRNFDGDDRQVAEDEDEEAAAASGKGLRVERRERVTFHLADPSITFYPDDEQESAGISKPYEECSEPTTSNLQLGLWPEKVSLLQKSDLTSKLHSSLKSAYHQYLQTSRTHSLETGTRFVSTFQEPVSKYFRVQDQASRLSPYIENVDIQALRCNPRPGKMIIYDLHGSKYKQEVYGNVPDATTWSFPNGALIKVVRGCWILYEKPHFQGQKCVLEEGEKVLNRDWLHQNKKHPERNFVMGSIKRVLKDCIVPEIELCPQSDPGCCPVYIHRAVRNLEELNIPKSASYTVKSGVWLAYPEINFKGQATILEEDQGLFEISAAEMKSLHPLQMGGLKVEMPMNLKVILYEKSHFRGHTKEFSEHVDSVPKVLKIDKDFRGIGSIRVIGGVWVAYEKEHFKGQQFLLEEGDFEDCSACGALNGPIMSFRYLQANFIESAITLFESDLESGKFIDITNQEISDLEEIGFGRETRSIHVKSGVWVAYCQKFFCGDQYILEKGKYKCFFDWGGSSNTILSIRPIQLEPLGINEPPHLLKAFSKPGFQGECIDFIKECADLTSFLPSSFKVLRGCWLLYYQEDVFYHQCVLEEGLYVDLASCGCPSARVRALKPIDYVFEEPSISLFALEHCEGRELLLEDAVNSVLNKDLHFYTQSVWIKSGLWIAYEGSNFLGRQILLMPNEIPNWTAFSGWKTIGSVRPMKQPAVYIRIRNRAQDEYLTVTGNLADARTMSVCISPYSGKDTQIWHYCRGLFKSKASDTCLDVIGGRDTPGAKVALWTEHGQFRQKWRLNRNGTISSYLSDELVLDVKGGDYYDKTYVIVNQPLEGEETQKWDIEIL", "length": 2943, "header": "tr|A0A9J7FU47-1|A0A9J7FU47_CRIGR Isoform 1 of Very large A-kinase anchor protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Crybg3 PE=3 SV=1 CANONICAL=A0A9J7FU47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47/entry#A0A9J7K8R9-1", "sequence": { "sequence": "MSGGRRRGSAPWHSFSRFFAPRNPSRDKEEEEEEKPGTGQPTGASRGAASVENEPMSTSQKKGNALPSEGVKIPQGEDRRNQADQPAILPMLDDPPKPNDLSNSTSDAKTGESERQPKESFFQFLGNLFNISGKSSLGEVKQSSFKDDQEKSEKDPQTPSGPPEEGIHREKEITGCPVRIQVLPVEEQESNSSELSDAFSLDTTQDSEQETTDTLKKDTVGKAEKPSVTYATYRGPTHIRKYLKQQTVLETVNHLDREDESSDSSPHTHIGSRSIMDTVMAPLSSASKEVATKGCLLGGPLEVSGYSQINLNMESHLENNPELQNIASSKTVVDKNSYGGSRRSCASPSSVSNPSYVVGKSDSQTESSLVCSSLFGGSKSSQVPCPEFQRETATENTLRETSSMISDGMSMSREGHVGPQRPAVSDFCGKSDGSDSTKVESTNLSSPNKSIRHEDTLLPESKCCDKPAADNPSRRNVSHTSITALQGHAVTDSKLVNEGKKLPAQDSQKNVVSEIMLEAVGASGVEPTTLSNIRAPEDKFESLPKDTEPLCETETKRLGLVLHVKTHSGGKNQEDPGSVKYSSDSAVVAKLESETAPNVNFEPNRNPTSDSPLHIENPQKAKVFPDAKTAPNLDCKTADCRTSPPTFVSEMDMLCKLDFPGLRRERALSSKTGQGNIHSLSECQDVGNHSEAADRETHALCLGHASVITEAKETVPDRCRFPLGPGTIGTHLAGVDLSDLEHGGISEDHKSVPSHGCKKAESSSTKASSTSEKSDSLSLETQTAKMLLQVEADAQSSFPIALNSGKGKALSKLPVSQAEPRDISQDKLAFSQLTVAGKLTKTVLSELNSLEIEKDKNGQSMDHKEMKEMCLGGGFEKNHRVGVSCASQYHSVQESEVDTQDNPASLLKSSQPGIVPLGPEEESTGHMAQNCKASMCVISPSLAICRTRKSSSISEMEEPSSDNISPKFQETDSTQVYSSFLGSDACLEKSVFTSEDGSSLSVPSLLGPEGEASSHRENANFLRAGPGAASSSSCHSKEYSTAAVNPHALPSHFDSLKVTVNLTCEGASVTDRLGHKSAYLELETPSPKGAEVTPCHGCLGSQTEKVSLAFPTTACFDNPMKAETGTVAGAPVSVNSSCQQCSEASADLQTEARRRAHDQLLLKSGLLSKADRLLEEIFSSVREELKSKHTVGTCQEHPAKDYVMNPGTVKEDIPSEVALTGIQPEEHVDEKSVENMSEVQEEEKDSVSPAVGETSLLLDFDRVNFSSLLEDQTTELVNEVIFAVQENLTSDIENTWASEPQANTAEILNSGGIKPHDIVREFLVSEQAVNQSTCEISDNKISGKFSSSSISDLVSSTKSIKGREIVAYQQPPSFRSGAGQSDIINLQKSETVSRAEDLLHTRLDDGAKPHLFVSEYCKRAAETECVDNHKMATRDARTLALSFNLPLFASDDTHMPGTSKSSLSDSLVCVSEKSLSGHSKSTPLAMADLGKAHKKDNEVSAGKIALIPSMLEMGNISKRDAELNIMKHEAAPLMSHKEKACKKDAELNTTKAEPEAGILTRGGVYQMDAQVHVEKPEELPATLGMEKAHKMDREGDTGKPEVMPAVSEMKTTHQKDAEGDIVKTEVTPVSMEMGNIYQKHAVGDVGSTGVAAVMSEVETIYQKDGEGIPSKEEVTSVALGTEDTYQKDEESDVAKTDVVGVAPVELETGDICPSDAEGDADGAEGTLILLEGGNIYSKDTDRLSGTTDRPVLEMESTYQTDAEDDLRKAESVAFVLDMKDTHLRAMHSSVDILGERVQRDLEQSNGTTERVPSKIEMEVTAPEGSSGCIENPEVSLPEVAVEKFNGTTAEVTMTPMEVMLAALESEKGPQEYMEKSGEETEEQPSERKEGLILHDDRLASHFRGYESPTLSKDYEGYPALAIPDFQEEDTGVGFHQIKSVTTVCSKERDVDYSDEKEETNLAFISQDEPENLSFTILYEEPLQEEDKYAGTELRETRSVVFPDTSSSSMPGLACERSESRTDLVHHFEKEGKLGEAFDGDNSEMFLSVEAKRYKIYPLALSPIYEDDSSQEDVLSSEVSPGHHGSTKSRESANQPSSVLSLLQSVSERLQRNFDGDDRQVAEDEDEEAAAASGKGLRVERRERVTFHLADPSITFYPDDEQESAGISKPYEECSEPTTSNLQLGLWPEKVSLLQKSDLTSKLHSSLKSAYHQYLQTSRTHSLETGTRFVSTFQEPVSKYFRVQDQASRLSPYIENVDIQALRCNPRPGKMIIYDLHGSKYKQEVYGNVPDATTWSFPNGALIKVVRGCWILYEKPHFQGQKCVLEEGEKVLNRDWLHQNKKHPERNFVMGSIKRVLKDCIVPEIELCPQSDPGCCPVYIHRAVRNLEELNIPKSASYTVKSGVWLAYPEINFKGQATILEEDQGLFEISAAEMKSLHPLQMGGLKVEMPMNLKVILYEKSHFRGHTKEFSEHVDSVPKVLKIDKDFRGIGSIRVIGGVWVAYEKEHFKGQQFLLEEGDFEDCSACGALNGPIMSFRYLQANFIESAITLFESDLESGKFIDITNQEISDLEEIGFGRETRSIHVKSGVWVAYCQKFFCGDQYILEKGKYKCFFDWGGSSNTILSIRPIQLEPLGINEPPHLLKAFSKPGFQGECIDFIKECADLTSFLPSSFKVLRGCWLLYYQEDVFYHQCVLEEGLYVDLASCGCPSARVRALKPIDYVFEEPSISLFALEHCEGRELLLEDAVNSVLNKDLHFYTQSVWIKSGFLQCTSE", "length": 2773, "header": "tr|A0A9J7K8R9-1|A0A9J7K8R9_CRIGR Computationally mapped isoform of Very large A-kinase anchor protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Crybg3 PE=3 SV=1 CANONICAL=A0A9J7FU47-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752646", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752646", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "pmid": "" }, { "name": "lens development in camera-type eye", "id": "GO:0002088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002088", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "pmid": "" }, { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1061, "end_pos": 1063, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1135, "end_pos": 1137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1235, "end_pos": 1237, "annotation": 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"length": 1428, "header": "tr|A0A9J7FU49-1|A0A9J7FU49_CRIGR Isoform 1 of Rho GTPase-activating protein 31 OS=Cricetulus griseus OX=10029 GN=Arhgap31 PE=4 SV=1 CANONICAL=A0A9J7FU49-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 778, "start_aa": "Thr", "end_pos": 778, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr778", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 25% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267181", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267181" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FU96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU96" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU96", "locus": {} } ], "crossref": [ { "id": "A0A9J7FU96", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FU96", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751975", "url": "https://www.ncbi.nlm.nih.gov/gene/100751975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615154.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027239760.1. 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{ "database": "UniProtKB", "id": "A0A9J7FUD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FUD4", 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268436", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268436" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Usf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3", "locus": {} } ], "crossref": [ { "id": "cd18910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768025", "url": "https://www.ncbi.nlm.nih.gov/gene/100768025", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768025", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FUE3", "url": "https://www.orthodb.org/?gene=A0A9J7FUE3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46970", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46970", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46970:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46970:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268436", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268436", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEMTEHETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELKRQNDELLLNGGNSEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHSLQKQTANVVPVQRTCKLVTPVSISGVYPSENKPWHQNTVSALAANQPVPLCLPTAISAQNILELSTSESQSSVLGASGGSLITVSVGPEPHQHHSLHTCLIDQNASENSNGQESPKSKKTVACVTSISSSSSAPASKEHHETQSGPSVQSSSGDLQNTIVVSVTTTVCSEPPRSTGESSPVSISKTADSTTTTTVVAPVHTGVAKTTLPVSSLSAKPLDNGWTLSCSLPSSSVSASDLKNINSLTRISSAGNTQTTWTTLHLAGNTIQPLSQTPSSAVTPVLNESGTSPTPSHHKHVSTGITLSNSLPADGQPVEQIVVTLPSCPPLPMQPPIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSAVTAAPGNQNVIILQPPSTTPCPTMLRAEVPNQTVGQQIVIIQAANQNPLPLLSAPHPGPVRLPVNGASAIIGSHNSVQSVPAPQTFGGKHLVHILPRPSSLSTTNSTQTFSVTMSNQQQPQTISLNGQLFALQPVMSSSGTTNQTPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLSISQSANPQTSANSQTSPANCASLTTTVAPTMTTDNLATLPSTYSLAAASSTNTITCLPPTMKSKRLNKKPGAKKHLAVNKPACPLNSVRDVGKLDGPRTDSSTELSCSDGQLDSLPVNLPSVAVSQAKSVSISTSHSLDILNSESVIPESVSKSKSVEDCSSSSQESETNEQFAVAPAKSKDSTPILQETSQGTPPTTVALSSATKSCTSTHVLIPSPIESQILVSQVSGMSSTTSTSSTDCISEVEIVAEPCPVQQDSLNNMQTAGPLKGQGLTMLLSDLTKEKDLQKSSLSVQIDHPDFSPENSKIGDSNVDMHPKQELLLMNDDRDPPQHHSCLPDQEVLNGSLLTSRQADSPMSTSSGSSRSFSVASMLPETAREDVTSSTTTNTCDSCTFAEQTDIVALAARAILDQENIDKGRVGTQTEMREVTSKPSETSLEGEQPFKPQLHKEPCTGQADATPNEFNSQDSVEVTVDRPLEKPSCSLGIKTSNASLQVSASQPPSLTSLSVNNLIHQSSINHPLVSCTGLSQTSEQTSIPVTVNMTVASSSYGSQPPVPPLMTEYSQEQLNSMTSAIPNPQIQEPLSKPSHEGRKDSTKRTVQDDLLLSSAKRQKHCQAAPLRLESLPLMSRTPDSIPDQTQMMASQIPTNSSNSVVPASNPAHGDSLTRLFPPGNNFAAPALRQTEVQCSSQPPVAEQQQQTQASQHLQALQQHVPTQGVSHLHTNHLYIKQQQQQQQAGQLRERHHLYQLQHHVPHADSAVHSQPHIVHQQRTLQQEVQMQKKRNLVQGAPASQLSLQPKHHGTDQSRPKSSQPHPHHQQIQQQIQQHFANSQPEKSCENPSTSRGHHNHAQNHLNQDILHQQQDVGSRQQGSAVSSDHVSGHNQMQRLLPSRGLEQQMVSQPSIVTRSSDMTCTPHRPERNRVSSYSAEALIGKSSSTSEQRMGMSIQGSRVSEQLEMRSYLDVPRNKSLALHNMQGRMDHTVPLPDCQTFKPAGASQQPQSNFEVQSSRNNEIGNPVPSLRSMQSQAFRISQNTGPPPIDRQKRLPYPPVQSIPTGNAVPPRDNENTCHQSFMQSLLAPHLGDQVIGSQRSLSEHPRNTQCGPSSTIEYNCPPTRESVHIRRESENQNRESCDMSLGTINTRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITDSHGTKSHMNPPVTSNMHGVARPTLPHPSVSHGNADQGPPVRQANSSVAQRSRHPLQDSTGSKIRQPERNRSGNQRHSNVFDPSLPHLPLSAGGSMILGRQQPATEKRGSIVRFMPDSPQVPNDNSGPDQHTLSQNFGFPFIPEGGMNPPINANTSFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFSNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPEMPPMHMANSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2229, "header": "tr|A0A9J7FUE3-1|A0A9J7FUE3_CRIGR Isoform 1 of Basic helix-loop-helix domain-containing protein USF3 OS=Cricetulus griseus OX=10029 GN=Usf3 PE=4 SV=1 CANONICAL=A0A9J7FUE3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FUE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3/entry#A0A9J7FUE3-1", "sequence": { "sequence": "MPEMTEHETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELKRQNDELLLNGGNSEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHSLQKQTANVVPVQRTCKLVTPVSISGVYPSENKPWHQNTVSALAANQPVPLCLPTAISAQNILELSTSESQSSVLGASGGSLITVSVGPEPHQHHSLHTCLIDQNASENSNGQESPKSKKTVACVTSISSSSSAPASKEHHETQSGPSVQSSSGDLQNTIVVSVTTTVCSEPPRSTGESSPVSISKTADSTTTTTVVAPVHTGVAKTTLPVSSLSAKPLDNGWTLSCSLPSSSVSASDLKNINSLTRISSAGNTQTTWTTLHLAGNTIQPLSQTPSSAVTPVLNESGTSPTPSHHKHVSTGITLSNSLPADGQPVEQIVVTLPSCPPLPMQPPIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSAVTAAPGNQNVIILQPPSTTPCPTMLRAEVPNQTVGQQIVIIQAANQNPLPLLSAPHPGPVRLPVNGASAIIGSHNSVQSVPAPQTFGGKHLVHILPRPSSLSTTNSTQTFSVTMSNQQQPQTISLNGQLFALQPVMSSSGTTNQTPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLSISQSANPQTSANSQTSPANCASLTTTVAPTMTTDNLATLPSTYSLAAASSTNTITCLPPTMKSKRLNKKPGAKKHLAVNKPACPLNSVRDVGKLDGPRTDSSTELSCSDGQLDSLPVNLPSVAVSQAKSVSISTSHSLDILNSESVIPESVSKSKSVEDCSSSSQESETNEQFAVAPAKSKDSTPILQETSQGTPPTTVALSSATKSCTSTHVLIPSPIESQILVSQVSGMSSTTSTSSTDCISEVEIVAEPCPVQQDSLNNMQTAGPLKGQGLTMLLSDLTKEKDLQKSSLSVQIDHPDFSPENSKIGDSNVDMHPKQELLLMNDDRDPPQHHSCLPDQEVLNGSLLTSRQADSPMSTSSGSSRSFSVASMLPETAREDVTSSTTTNTCDSCTFAEQTDIVALAARAILDQENIDKGRVGTQTEMREVTSKPSETSLEGEQPFKPQLHKEPCTGQADATPNEFNSQDSVEVTVDRPLEKPSCSLGIKTSNASLQVSASQPPSLTSLSVNNLIHQSSINHPLVSCTGLSQTSEQTSIPVTVNMTVASSSYGSQPPVPPLMTEYSQEQLNSMTSAIPNPQIQEPLSKPSHEGRKDSTKRTVQDDLLLSSAKRQKHCQAAPLRLESLPLMSRTPDSIPDQTQMMASQIPTNSSNSVVPASNPAHGDSLTRLFPPGNNFAAPALRQTEVQCSSQPPVAEQQQQTQASQHLQALQQHVPTQGVSHLHTNHLYIKQQQQQQQAGQLRERHHLYQLQHHVPHADSAVHSQPHIVHQQRTLQQEVQMQKKRNLVQGAPASQLSLQPKHHGTDQSRPKSSQPHPHHQQIQQQIQQHFANSQPEKSCENPSTSRGHHNHAQNHLNQDILHQQQDVGSRQQGSAVSSDHVSGHNQMQRLLPSRGLEQQMVSQPSIVTRSSDMTCTPHRPERNRVSSYSAEALIGKSSSTSEQRMGMSIQGSRVSEQLEMRSYLDVPRNKSLALHNMQGRMDHTVPLPDCQTFKPAGASQQPQSNFEVQSSRNNEIGNPVPSLRSMQSQAFRISQNTGPPPIDRQKRLPYPPVQSIPTGNAVPPRDNENTCHQSFMQSLLAPHLGDQVIGSQRSLSEHPRNTQCGPSSTIEYNCPPTRESVHIRRESENQNRESCDMSLGTINTRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITDSHGTKSHMNPPVTSNMHGVARPTLPHPSVSHGNADQGPPVRQANSSVAQRSRHPLQDSTGSKIRQPERNRSGNQRHSNVFDPSLPHLPLSAGGSMILGRQQPATEKRGSIVRFMPDSPQVPNDNSGPDQHTLSQNFGFPFIPEGGMNPPINANTSFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFSNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPEMPPMHMANSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2229, "header": "tr|A0A9J7FUE3-1|A0A9J7FUE3_CRIGR Isoform 1 of Basic helix-loop-helix domain-containing protein USF3 OS=Cricetulus griseus OX=10029 GN=Usf3 PE=4 SV=1 CANONICAL=A0A9J7FUE3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 465, "start_aa": "Thr", "end_pos": 465, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr465", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 542, "start_aa": "Thr", "end_pos": 542, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr542", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768025", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of epithelial to mesenchymal transition", "id": "GO:0010719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010719", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1073, "end_pos": 1075, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1220, "end_pos": 1222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1271, "end_pos": 1273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1378, "end_pos": 1380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1697, "end_pos": 1699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1874, "end_pos": 1876, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1894, "end_pos": 1896, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1898, "end_pos": 1900, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1955, "end_pos": 1957, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1980, "end_pos": 1982, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2064, "end_pos": 2066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2173, "end_pos": 2175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2199, "end_pos": 2201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2216, "end_pos": 2218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 645, "end_pos": 647, "annotation": "n_glycosylation_sequon" }, { "start_pos": 683, "end_pos": 685, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FUE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUE3" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 69, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 465, 542 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1073, "end_pos": 1075 }, { "start_pos": 1220, "end_pos": 1222 }, { "start_pos": 1271, "end_pos": 1273 }, { "start_pos": 1378, "end_pos": 1380 }, { "start_pos": 152, "end_pos": 154 }, { "start_pos": 1697, "end_pos": 1699 }, { "start_pos": 1874, "end_pos": 1876 }, { "start_pos": 1894, "end_pos": 1896 }, { "start_pos": 1898, "end_pos": 1900 }, { "start_pos": 1955, "end_pos": 1957 }, { "start_pos": 1980, "end_pos": 1982 }, { "start_pos": 2064, "end_pos": 2066 }, { "start_pos": 2173, "end_pos": 2175 }, { "start_pos": 2199, "end_pos": 2201 }, { "start_pos": 2216, "end_pos": 2218 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 645, "end_pos": 647 }, { "start_pos": 683, "end_pos": 685 }, { "start_pos": 714, "end_pos": 716 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FUF2-1", "uniprot_ac": "A0A9J7FUF2", "uniprot_id": "A0A9J7FUF2_CRIGR", "mass": { "chemical_mass": 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257782" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zbed2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ0", "locus": {} } ], "crossref": [ { "id": "113834247", "url": "https://www.ncbi.nlm.nih.gov/gene/113834247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113834247", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FUQ0", "url": "https://www.orthodb.org/?gene=A0A9J7FUQ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35827:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35827:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027257782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FUQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQNKGTXFSKAWGYFNLASAGAGPHYKXYATCXPNVNVGTAISWKHLGSMDREELEKSGQNLTRQHQDHAPXLPLGIKGDXGRFREQMDALALWXTQREMGVLRMERALECWERAVGGREQAHEDGRAILEMTXEVRAEKVVCLHPEEDLAAAVHLFCSA", "length": 161, "header": "tr|A0A9J7FUQ0-1|A0A9J7FUQ0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger BED domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Zbed2 PE=4 SV=1 CANONICAL=A0A9J7FUQ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FUQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ0/entry#A0A9J7FUQ0-1", "sequence": { "sequence": "MAQNKGTXFSKAWGYFNLASAGAGPHYKXYATCXPNVNVGTAISWKHLGSMDREELEKSGQNLTRQHQDHAPXLPLGIKGDXGRFREQMDALALWXTQREMGVLRMERALECWERAVGGREQAHEDGRAILEMTXEVRAEKVVCLHPEEDLAAAVHLFCSA", "length": 161, "header": "tr|A0A9J7FUQ0-1|A0A9J7FUQ0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger BED domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Zbed2 PE=4 SV=1 CANONICAL=A0A9J7FUQ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614764.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509829", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509829" } ] }, { "annotation": "Involved in B-lymphocyte antigen receptor signaling and germinal center formation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ6#function" }, { "database": "UniProtKB", "id": "ARBA00055326", "url": "https://www.uniprot.org/uniprotkb/ARBA00055326#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUQ6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl6", "url": 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"gene_names": [ { "name": "LOC113835385", "type": "recommended", "evidence": [ { "id": "A0A9J7FV02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ] }, { "name": "LOC113835385", "type": "synonym", "evidence": [ { "id": "XP_027269098", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269098" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 19-8-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FV02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 19-8-like", "type": "synonym", "evidence": [ { "id": "XP_027269098", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269098" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269098", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269098" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02#function" }, { "database": "UniProtKB", "id": "ARBA00003327", "url": "https://www.uniprot.org/uniprotkb/ARBA00003327#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835385", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02", "locus": {} } ], "crossref": [ { "id": "A0A9J7FV02", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FV02", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835385", "url": "https://www.ncbi.nlm.nih.gov/gene/113835385", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835385", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835385", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR38140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38140:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38140:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269098", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269098", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYYSNYYGGLGYGYGGFGGLGYGYGSYGCGCNSIRRLGCGCGYGGYGYGCCRPSCCGRYGFSSFY", "length": 66, "header": "tr|A0A9J7FV02-1|A0A9J7FV02_CRIGR Isoform 1 of Keratin-associated protein 19-8-like OS=Cricetulus griseus OX=10029 GN=LOC113835385 PE=3 SV=1 CANONICAL=A0A9J7FV02-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02/entry#A0A9J7FV02-1", "sequence": { "sequence": "MSYYSNYYGGLGYGYGGFGGLGYGYGSYGCGCNSIRRLGCGCGYGGYGYGCCRPSCCGRYGFSSFY", "length": 66, "header": "tr|A0A9J7FV02-1|A0A9J7FV02_CRIGR Isoform 1 of Keratin-associated protein 19-8-like OS=Cricetulus griseus OX=10029 GN=LOC113835385 PE=3 SV=1 CANONICAL=A0A9J7FV02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835385", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835385", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ], "pmid": "" }, { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV02" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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:: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267162", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267162" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd4a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23", "locus": {} } ], "crossref": [ { "id": "100772570", "url": "https://www.ncbi.nlm.nih.gov/gene/100772570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772570", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FV23", "url": "https://www.orthodb.org/?gene=A0A9J7FV23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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"length": 1872, "header": "tr|A0A9J7FV23-1|A0A9J7FV23_CRIGR Isoform 1 of C-myc promoter-binding protein OS=Cricetulus griseus OX=10029 GN=Dennd4a PE=4 SV=1 CANONICAL=A0A9J7FV23-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23/entry#A0A9J7FV23-1", "sequence": { "sequence": "MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEPITDVSVVIKSLGEEVPRDYTCIDVTPTGLSADLNNGSLVGPQIFLCYKRGRDKPPLTDLGVLYDWKERLKQGCEIIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTDICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQEDYESFSLPESVPLFCLPMGATIECWPPNSKYPLPVFSTFVLTGASAEKVYGAAIQFYEPYSEENLTEKQRLLLGLTSLVDGKSDSSRTIHTNKCICLLSHWPFFDAFRKFLTFLYRYSISGPHALPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGGKFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYVPLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKILPKKPCKNLMNTLNNLHQQLAKLQQRPRDEGLMDLAMNDYDFNSGKRLHMIDLEIQEAFLFFMASILKGYRSYLRPITQAPSETATDATSLFALQAFLRSRDRSHQKFYNMMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDASFKSEHTVFVTPPEIPHLPNGEEPPLQYSYSGFPVLRNNLFERPEGFLQARKNKLPSKPSSPRSPSPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVLKKMQLKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAVLESTWPSRSRSGYFLWTKVRNVVLGVTQFKRALKKHPHLSQRDLSGGRSDLGYNSLSKDDVRKEGTSTEDIQGEKEKKGSDSSSLSENESTKGSADCLPTLSYQSSSTIVRLSSANNNSADKIAGECEESTPELLLMPSLEATNETQNMQSRCFRKRHKSDDESHLQQQMPWGNRNRNLSGGVLMGFMLNRINQETSPGDMVEKLGADAKILSNVISKSTRPNSLDIGKPPVKSKRDSLEKESSDDDTPFDGSNCLDKVDSPVIFDLEDLDTETDGSKVGCVAAQNPKRLQRMNSSFSVKPSEKTDVVTGFDPLSLLVAETEQKQKVKEEEDDDDSKSISTPSAKRNLAEEIEMYMNNMSSPLTSRTPSIDLQRACDDKLVNKKSPTLVKACRRSSLPPNSPRPVRLTKSKSYTKSEERPRDRLWSSPAFSPTCPFREGTQETLAHSSPSFNLDTLLVPKLDVLRHSVFSAGKGVAEKASKWYSRFTMYTSSKDQSSDRTSLSSVGAQDSESTSLTDEDVCHELEGATSSQESSATSGTKGIDVSRTSLGSSASLEGSLSKFALPGKSETASSLNTSTTNIFQNYAMEVLISSCSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNVEIRDLRRPGRYFLKSSSSTETMHFASSFSNQTRQSCISASASGLDTSTLSVQGNFDLNNKSKLQENPCARSIQIPAHRSKTVVSKCPLFPMARSISTCGPLDKDDPGGQKLIPTGSLPATLQGATDSLGLEWHLPSPDPVTVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRRLDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILWNAHSQNRTLLFETQKYPMVHLLQKSDNSFNQELLKSMVKSIKMNDVYGPMSQILETLNKCPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKMAYDRLTPSQVKSTHNCDRPPSTGVMECRKTFGEPYL", "length": 1872, "header": "tr|A0A9J7FV23-1|A0A9J7FV23_CRIGR Isoform 1 of C-myc promoter-binding protein OS=Cricetulus griseus OX=10029 GN=Dennd4a PE=4 SV=1 CANONICAL=A0A9J7FV23-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 679, "start_aa": "Thr", "end_pos": 679, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr679", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of Rab protein signal transduction", "id": "GO:0032483", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032483", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1000, "end_pos": 1002, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1034, "end_pos": 1036, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1150, "end_pos": 1152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1214, "end_pos": 1216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1431, "end_pos": 1433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1477, "end_pos": 1479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1523, "end_pos": 1525, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1552, "end_pos": 1554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1745, "end_pos": 1747, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 944, "end_pos": 946, "annotation": "n_glycosylation_sequon" }, { "start_pos": 973, "end_pos": 975, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" }, { "id": "PS51498", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51498" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MABP", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 200, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV23" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 192, "end_pos": 642, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 679 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1000, "end_pos": 1002 }, { "start_pos": 1034, "end_pos": 1036 }, { "start_pos": 1150, "end_pos": 1152 }, { "start_pos": 1214, "end_pos": 1216 }, { "start_pos": 130, "end_pos": 132 }, { "start_pos": 1431, "end_pos": 1433 }, { "start_pos": 1477, "end_pos": 1479 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 1523, "end_pos": 1525 }, { "start_pos": 1552, "end_pos": 1554 }, { "start_pos": 1745, "end_pos": 1747 }, { "start_pos": 184, "end_pos": 186 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 944, "end_pos": 946 }, { "start_pos": 973, "end_pos": 975 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FV52-1", "uniprot_ac": "A0A9J7FV52", "uniprot_id": "A0A9J7FV52_CRIGR", "mass": { "chemical_mass": 42813.0, "monoisotopic_mass": 42813.0 }, "refseq": { "ac": "XP_027268977", "name": "coiled-coil domain-containing protein 74B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268977" }, "gene_names": [ { "name": "Ccdc74b", "type": "recommended", "evidence": [ { "id": "A0A9J7FV52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV52" } ] }, { "name": "Ccdc74b", "type": "synonym", "evidence": [ { "id": "XP_027268977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268977" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 74B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FV52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV52/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 74B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268977" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027268977.1. 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FV58-1", "uniprot_ac": "A0A9J7FV58", "uniprot_id": "A0A9J7FV58_CRIGR", "mass": { "chemical_mass": 20765.0, "monoisotopic_mass": 20765.0 }, "refseq": { "ac": "XP_027266382", "name": "LOW QUALITY PROTEIN: dysbindin domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266382" }, "gene_names": [ { "name": "Dbndd1", "type": "recommended", "evidence": [ { "id": "A0A9J7FV58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58" } ] }, { "name": "Dbndd1", "type": "synonym", "evidence": [ { "id": "XP_027266382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266382" } ] } ], "protein_names": [ { "name": "Dysbindin domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7FV58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: dysbindin domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027266382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266382" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027266382.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266382" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dbndd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58", "locus": {} } ], "crossref": [ { "id": "A0A9J7FV58", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FV58", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759269", "url": "https://www.ncbi.nlm.nih.gov/gene/100759269", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007531", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007531", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759269", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759269", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FV58", "url": "https://www.orthodb.org/?gene=A0A9J7FV58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16294", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16294", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16294:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16294:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266382", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRCSRSRDPVVSGAVGIPGPAPPLQPTPLADPIGRMESPESAGRGEIVKEVKVPQAALSVPAHETGDTCHTPVTEGEEVGIPIPAPGFLQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDDENLATESPAGLHPLSRAGCLRSPSWTKARAEQNRDKQPPTDPERKGTVVDSFLTMEGPKED", "length": 194, "header": "tr|A0A9J7FV58-1|A0A9J7FV58_CRIGR Isoform 1 of Dysbindin domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Dbndd1 PE=3 SV=1 CANONICAL=A0A9J7FV58-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58/entry#A0A9J7FV58-1", "sequence": { "sequence": "MRCSRSRDPVVSGAVGIPGPAPPLQPTPLADPIGRMESPESAGRGEIVKEVKVPQAALSVPAHETGDTCHTPVTEGEEVGIPIPAPGFLQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDDENLATESPAGLHPLSRAGCLRSPSWTKARAEQNRDKQPPTDPERKGTVVDSFLTMEGPKED", "length": 194, "header": "tr|A0A9J7FV58-1|A0A9J7FV58_CRIGR Isoform 1 of Dysbindin domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Dbndd1 PE=3 SV=1 CANONICAL=A0A9J7FV58-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759269", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759269", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027265833.1. 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"MKKTMTCQTVEKTKKEEDIFSDPKRSECQLKAPWNLLGSTVIDEDIPVPQVSLNVKGKLGKLGISEQQMRMTIQGRGLGQKHSQLFWGLPSLHSESIVATLLVLPLNSYSLEPQLMLFNGVCRAVTAPVLGYGCPAPPQPHTVPLTFLHPQPQPQPQPQPQPQPQPQPLSNAEPQPQTLPFTQAHVQSALAPLQSPSLPCGSPPQMPQDSTVSGVVHGNKDLQCHSLENHQHSLWGLVPKSQQYGTPFGLLVPSLPLVSQPSQNYASVPRTGHFHSGSELQGNLESYGPNNPIPPWCYPQFKTTETSPHSCKCVKPQRTVHWDQSCSNLRTGELSFYETVSMKPQLRQDVAKNLGQILGRCPLGNPQMISGCYILNNLRVIPETQMEWACHSGVGLEHEGDGISRKSLDQRQTRSILRLHISRKLWQITMGRIPIKVCCSWLAEDSTLWNLPPGSFYCNTAVLEIPFLDPKTQKMLEAHLIRYRVSQKWGLPIKVIESIKFYMLREAKTWPLPQSDLSLSSNSTSGIDVKSSFPYPLRENTNLYHNDRLETANSTSIIDHLPLTISRIDGEGEWPLGKSHSSNDYEVTEKIQKTEGDTPSINDNVSQNDAELPSRPGQEQPVKEQVAGSKSQSEMASCSSHLEVIEGKQTVGKHPPHMPITPGMLHEILGARNVSVLSGSDPSSQAGSSTRKNEDSDEPDSVVTTAHNTSRVLLPEDPAVSDFKKQLFQELKLKLEKQSQGHTEGYETDGSFTSNSLTGYSMSSSNSVSSSEASIFRSFHPQLCNTGISLDPWREPSVFKHNTMNLPVPRKENGKSETRKTQTSKAGKKSQPITGKSDNQKSQPLESYFRKKIGQLFQWLYSSKDNTRHRTEKDRALFMSCGPPEAHELMASLGKLLEDKLLYGQRSGFLEWSQKKCLQAQSDPTNGQPSKHEAACAHHGEGKYICYCPQIATAPGASCMLSPRQTHPHVSFEQQPQFYSYLPSLETRDP", 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"MKKTMTCQTVEKTKKEEDIFSDPKRSECQLKAPWNLLGSTVIDEDIPVPQVSLNVKGKLGKLGISEQQMRMTIQGRGLGQKHSQLFWGLPSLHSESIVATLLVLPLNSYSLEPQLMLFNGVCRAVTAPVLGYGCPAPPQPHTVPLTFLHPQPQPQPQPQPQPQPQPQPLSNAEPQPQTLPFTQAHVQSALAPLQSPSLPCGSPPQMPQDSTVSGVVHGNKDLQCHSLENHQHSLWGLVPKSQQYGTPFGLLVPSLPLVSQPSQNYASVPRTGHFHSGSELQGNLESYGPNNPIPPWCYPQFKTTETSPHSCKCVKPQRTVHWDQSCSNLRTGELSFYETVSMKPQLRQDVAKNLGQILGRCPLGNPQMISGCYILNNLRVIPETQMEWACHSGVGLEHEGDGISRKSLDQRQTRSILRLHISRKLWQITMGRIPIKVCCSWLAEDSTLWNLPPGSFYCNTAVLEIPFLDPKTQKMLEAHLIRYRVSQKWGLPIKVIESIKFYMLREAKTWPLPQSDLSLSSNSTSGIDVKSSFPYPLRENTNLYHNDRLETANSTSIIDHLPLTISRIDGEGEWPLGKSHSSNDYEVTEKIQKTEGDTPSINDNVSQNDAELPSRPGQEQPVKEQVAGSKSQSEMASCSSHLEVIEGKQTVGKHPPHMPITPGMLHEILGARNVSVLSGSDPSSQAGSSTRKNEDSDEPDSVVTTAHNTSRVLLPEDPAVSDFKKQLFQELKLKLEKQSQGHTEGYETDGSFTSNSLTGYSMSSSNSVSSSEASIFRSFHPQLCNTGISLDPWREPSVFKHNTMNLPVPRKENGKSETRKTQTSKAGKKSQPITGKSDNQKSQPLESYFRKKIGQLFQWLYSSKDNTRHRTEKDRALFMSCGPPEAHELMASLGKLLEDKLLYGQRSGFLEWSQKKCLQAQSDPTNGQPSKHEAACAHHGEGKYICYCPQIATAPGASCMLSPRQTHPHVSFEQQPQFYSYLPSLETRDP", "length": 990, "header": "tr|A0A9J7FV59-1|A0A9J7FV59_CRIGR Isoform 1 of Spermatogenesis-associated protein 31D1 OS=Cricetulus griseus OX=10029 GN=LOC103161847 PE=3 SV=1 CANONICAL=A0A9J7FV59-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 661, "start_aa": "Thr", "end_pos": 661, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr661", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV59" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV59" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103161847", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161847", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 673, "end_pos": 675, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 35% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027267418.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267418", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267418" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835262", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75", "locus": {} } ], "crossref": [ { "id": "A0A9J7FV75", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FV75", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835262", "url": "https://www.ncbi.nlm.nih.gov/gene/113835262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835262", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835262", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FV75", "url": "https://www.orthodb.org/?gene=A0A9J7FV75", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267418", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267418", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVRVKYAEKQEQRFEPEKLREGRNIIGLQKMESDISQAFQEELTCFICLGYFTDPVTISCGHSFCQACLHLSWEDMEVPVHCPMCREPSLQKDFRTNTVLKKLVSIARQASLKKSLSANDHKCDIHKETKRIFCVENKIYLCKLCSESHEHCAHTHCAIETAGESQMEKLLIKMASIWEKMEENQQNLEEEDSMITQFRDYLTQREDMISTEYQKWYPVPFDEEKQHIEKMKNEGQCALEKLRERISLMLLKSMELRDIYEEMMVLSQKPYVELLQGFEDILQRSESMRISMPQNMKPELSALPITGLTERFQSFQGERQQ", "length": 377, "header": "tr|A0A9J7FV75-1|A0A9J7FV75_CRIGR Isoform 1 of Tripartite motif-containing protein 43-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835262 PE=4 SV=1 CANONICAL=A0A9J7FV75-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75/entry#A0A9J7FV75-1", "sequence": { "sequence": "MSLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVRVKYAEKQEQRFEPEKLREGRNIIGLQKMESDISQAFQEELTCFICLGYFTDPVTISCGHSFCQACLHLSWEDMEVPVHCPMCREPSLQKDFRTNTVLKKLVSIARQASLKKSLSANDHKCDIHKETKRIFCVENKIYLCKLCSESHEHCAHTHCAIETAGESQMEKLLIKMASIWEKMEENQQNLEEEDSMITQFRDYLTQREDMISTEYQKWYPVPFDEEKQHIEKMKNEGQCALEKLRERISLMLLKSMELRDIYEEMMVLSQKPYVELLQGFEDILQRSESMRISMPQNMKPELSALPITGLTERFQSFQGERQQ", "length": 377, "header": "tr|A0A9J7FV75-1|A0A9J7FV75_CRIGR Isoform 1 of Tripartite motif-containing protein 43-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835262 PE=4 SV=1 CANONICAL=A0A9J7FV75-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835262", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835262", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actomyosin structure organization", "id": "GO:0031032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FV75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 174, "end_pos": 217, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FV75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV75" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 101, "end_pos": 142, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FV76-1", "uniprot_ac": "A0A9J7FV76", "uniprot_id": "A0A9J7FV76_CRIGR", "mass": { "chemical_mass": 35701.0, "monoisotopic_mass": 35701.0 }, "refseq": { "ac": "XP_003513413", "name": "olfactory receptor 145", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513413" }, "gene_names": [ { "name": "LOC100759481", "type": "recommended", "evidence": [ { "id": "A0A9J7FV76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76" } ] }, { "name": "LOC100759481", "type": "synonym", "evidence": [ { "id": "XP_003513413", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513413" } ] } ], "protein_names": [ { "name": "Olfactory receptor 145", "type": "synonym", "evidence": [ { "id": "A0A9J7FV76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 145", "type": "synonym", "evidence": [ { "id": "XP_003513413", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513413" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615884.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003513413.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513413", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513413" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759481", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76", "locus": {} } ], "crossref": [ { "id": "A0A9J7FV76", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FV76", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15405", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15405", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759481", "url": "https://www.ncbi.nlm.nih.gov/gene/100759481", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759481", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759481", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FV76", "url": "https://www.orthodb.org/?gene=A0A9J7FV76", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513413", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513413", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIIKERMALGNGSITVKEFILLGLTQQPELQLPFFFLFLAIYVVSMVGNLGLIVLIVLNPHLHTPMYYFLFNLSFIDFCYSSVITPKMLVSFLKQNIISHAECMTQLFFFAFFVIDECCILTAMAYDRYVAICKPLLYKVTMSHQVCFMMTMSVYTMGLVGAMAHTVCMLRLTFCNSNIINHYMCDIPPLLKLSCTSTAINELVVFIVVGVNVIGPSLIIFTSYTLIISNISHIRSTEGRSKAFSTCSSHIIAVSIFFGASAFMYLKPSPIGSEGEDKVSTVFYTIVGPMLNPFIYSLRNKDVHIALSKTLKRSMLV", "length": 318, "header": "tr|A0A9J7FV76-1|A0A9J7FV76_CRIGR Isoform 1 of Olfactory receptor 145 OS=Cricetulus griseus OX=10029 GN=LOC100759481 PE=3 SV=1 CANONICAL=A0A9J7FV76-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76/entry#A0A9J7FV76-1", "sequence": { "sequence": "MKIIKERMALGNGSITVKEFILLGLTQQPELQLPFFFLFLAIYVVSMVGNLGLIVLIVLNPHLHTPMYYFLFNLSFIDFCYSSVITPKMLVSFLKQNIISHAECMTQLFFFAFFVIDECCILTAMAYDRYVAICKPLLYKVTMSHQVCFMMTMSVYTMGLVGAMAHTVCMLRLTFCNSNIINHYMCDIPPLLKLSCTSTAINELVVFIVVGVNVIGPSLIIFTSYTLIISNISHIRSTEGRSKAFSTCSSHIIAVSIFFGASAFMYLKPSPIGSEGEDKVSTVFYTIVGPMLNPFIYSLRNKDVHIALSKTLKRSMLV", "length": 318, "header": "tr|A0A9J7FV76-1|A0A9J7FV76_CRIGR Isoform 1 of Olfactory receptor 145 OS=Cricetulus griseus OX=10029 GN=LOC100759481 PE=3 SV=1 CANONICAL=A0A9J7FV76-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV76" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268234" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH3orf38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770974", "url": "https://www.ncbi.nlm.nih.gov/gene/100770974", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770974", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770974", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVG4", "url": "https://www.orthodb.org/?gene=A0A9J7FVG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21084", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21084", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21084:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21084:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268234", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGLRHLETEGCRDLLGMLDNEEIMALCDTVTNRLVQPVDRQDAIHAILVYSQSVEELLRRKKVHREVIFKYLATQGVVVPPTTEKHNLIQYAKGYWEEQSLKLKTAAEAVTTTEDIQLFEQQAKEDKEAEKVDFRRLGEEFCQWFFELLNSQNPFLGPPQDEWGPQHFWNDVKLRFYYSTTEQNVIDYHGAEIVSLRLLSLVKEEFLFLSPNLDSQGLKCASSPHGLVMVGVAGTVHRGNTCLGIFEQIFGLIRSPFVENTWKIKFINLRIIGGSSLAPGTLLKPAVTFEQSDLESFYNVITLCNNPEVSPNIRQALDSGTGDQVLCSGDEALSNKKELNSPNPLKH", "length": 348, "header": "tr|A0A9J7FVG4-1|A0A9J7FVG4_CRIGR Isoform 1 of Uncharacterized protein C3orf38 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH3orf38 PE=4 SV=1 CANONICAL=A0A9J7FVG4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG4/entry#A0A9J7FVG4-1", "sequence": { "sequence": "MSGLRHLETEGCRDLLGMLDNEEIMALCDTVTNRLVQPVDRQDAIHAILVYSQSVEELLRRKKVHREVIFKYLATQGVVVPPTTEKHNLIQYAKGYWEEQSLKLKTAAEAVTTTEDIQLFEQQAKEDKEAEKVDFRRLGEEFCQWFFELLNSQNPFLGPPQDEWGPQHFWNDVKLRFYYSTTEQNVIDYHGAEIVSLRLLSLVKEEFLFLSPNLDSQGLKCASSPHGLVMVGVAGTVHRGNTCLGIFEQIFGLIRSPFVENTWKIKFINLRIIGGSSLAPGTLLKPAVTFEQSDLESFYNVITLCNNPEVSPNIRQALDSGTGDQVLCSGDEALSNKKELNSPNPLKH", "length": 348, "header": "tr|A0A9J7FVG4-1|A0A9J7FVG4_CRIGR Isoform 1 of Uncharacterized protein C3orf38 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH3orf38 PE=4 SV=1 CANONICAL=A0A9J7FVG4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FVG5-1", "uniprot_ac": "A0A9J7FVG5", "uniprot_id": "A0A9J7FVG5_CRIGR", "mass": { "chemical_mass": 45853.0, "monoisotopic_mass": 45853.0 }, "refseq": { "ac": "XP_027266588", "name": "uncharacterized protein C16orf46 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266588" }, "gene_names": [ { "name": "CUNH16orf46", "type": "recommended", "evidence": [ { "id": "A0A9J7FVG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5" } ] }, { "name": "CUNH16orf46", "type": "synonym", "evidence": [ { "id": "XP_027266588", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266588" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C16orf46 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FVG5", "database": 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266588", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266588" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH16orf46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5", "locus": {} } ], "crossref": [ { "id": "100765361", "url": "https://www.ncbi.nlm.nih.gov/gene/100765361", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765361", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765361", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVG5", "url": "https://www.orthodb.org/?gene=A0A9J7FVG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36869:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36869:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15032", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15032", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266588", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266588", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW97", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFCQESETVVENNENKNTQGAEETALTLSCPDERSERNHVCCLLGVSDLTLEEDERAIEFAIGTGWEEAVHGWGRTSPTACIWSRKKIKRGRVGEGSSSNSTSDCLFCMSLSQGSLEVHSLSEVGKPEASAVAEVSSEKNWSPEKSWENISQRPSTASREPKKLCLPTYMHGEKKSLQIKEFIWCMEEWAMPETVSGKTCRSPCRSTDRNLSISSSLTSKALVVLPPLQSSTPNSLDVLSKKNSNVFWQPEEKAIRVEKDECEACTDMLKTVDGKGEKRHFELASCLKVTDILPFPPPVARTQLLAAESSKCCLHWSLLPQKSSMFSSSPANIHYLATLQLLHKQRVQSSRTRLKAKEPRHPRNIQKHILTESKQENSSQALSDKMFPKPLLPSLTVSRVVIPVSTHRVL", "length": 411, "header": "tr|A0A9J7FVG5-1|A0A9J7FVG5_CRIGR Isoform 1 of Uncharacterized protein C16orf46 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH16orf46 PE=4 SV=1 CANONICAL=A0A9J7FVG5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5/entry#A0A9J7FVG5-1", "sequence": { "sequence": "MDFCQESETVVENNENKNTQGAEETALTLSCPDERSERNHVCCLLGVSDLTLEEDERAIEFAIGTGWEEAVHGWGRTSPTACIWSRKKIKRGRVGEGSSSNSTSDCLFCMSLSQGSLEVHSLSEVGKPEASAVAEVSSEKNWSPEKSWENISQRPSTASREPKKLCLPTYMHGEKKSLQIKEFIWCMEEWAMPETVSGKTCRSPCRSTDRNLSISSSLTSKALVVLPPLQSSTPNSLDVLSKKNSNVFWQPEEKAIRVEKDECEACTDMLKTVDGKGEKRHFELASCLKVTDILPFPPPVARTQLLAAESSKCCLHWSLLPQKSSMFSSSPANIHYLATLQLLHKQRVQSSRTRLKAKEPRHPRNIQKHILTESKQENSSQALSDKMFPKPLLPSLTVSRVVIPVSTHRVL", "length": 411, "header": "tr|A0A9J7FVG5-1|A0A9J7FVG5_CRIGR Isoform 1 of Uncharacterized protein C16orf46 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH16orf46 PE=4 SV=1 CANONICAL=A0A9J7FVG5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVG5/entry#A0A9J7FW97-1", "sequence": { "sequence": "MSLSQGSLEVHSLSEVGKPEASAVAEVSSEKNWSPEKSWENISQRPSTASREPKKLCLPTYMHGEKKSLQIKEFIWCMEEWAMPETVSGKTCRSPCRSTDRNLSISSSLTSKALVVLPPLQSSTPNSLDVLSKKNSNVFWQPEEKAIRVEKDECEACTDMLKTVDGKGEKRHFELASCLKVTDILPFPPPVARTQLLAAESSKCCLHWSLLPQKSSMFSSSPANIHYLATLQLLHKQRVQSSRTRLKAKEPRHPRNIQKHILTESKQENSSQALSDKMFPKPLLPSLTVSRVVIPVSTHRVL", "length": 302, "header": "tr|A0A9J7FW97-1|A0A9J7FW97_CRIGR Computationally mapped isoform of Uncharacterized protein C16orf46 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH16orf46 PE=4 SV=1 CANONICAL=A0A9J7FVG5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613594.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269090" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752868", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVM0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVM0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752868", "url": "https://www.ncbi.nlm.nih.gov/gene/100752868", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752868", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752868", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR39653", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39653", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39653:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39653:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCYCGRYYGGLGYGYGGLGYGYGGLGYGYGCGYGGYGYGCYRPLCYRRYWSYGFY", "length": 55, "header": "tr|A0A9J7FVM0-1|A0A9J7FVM0_CRIGR Isoform 1 of Keratin-associated protein 20-2-like OS=Cricetulus griseus OX=10029 GN=LOC100752868 PE=4 SV=1 CANONICAL=A0A9J7FVM0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVM0/entry#A0A9J7FVM0-1", "sequence": { "sequence": "MCYCGRYYGGLGYGYGGLGYGYGGLGYGYGCGYGGYGYGCYRPLCYRRYWSYGFY", "length": 55, "header": "tr|A0A9J7FVM0-1|A0A9J7FVM0_CRIGR Isoform 1 of Keratin-associated protein 20-2-like OS=Cricetulus griseus OX=10029 GN=LOC100752868 PE=4 SV=1 CANONICAL=A0A9J7FVM0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268449" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVQ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc191", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVQ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773871", "url": "https://www.ncbi.nlm.nih.gov/gene/100773871", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269611" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103164387", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR7", "locus": {} } ], "crossref": [ { "id": "103164387", "url": "https://www.ncbi.nlm.nih.gov/gene/103164387", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103164387", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103164387", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVR7", "url": "https://www.orthodb.org/?gene=A0A9J7FVR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17149", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17149", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17149:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17149:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPPARRSVSRPRARVRPPPPETLPTAGFDDELYDCLDYYYLRDFPASGAGRSKGRTRREQQLRTNYPVPGGHERKVAQTLINAQRKRRQRQLQPRPRTRLT", "length": 102, "header": "tr|A0A9J7FVR7-1|A0A9J7FVR7_CRIGR Isoform 1 of Nuclear protein 2 OS=Cricetulus griseus OX=10029 GN=LOC103164387 PE=3 SV=1 CANONICAL=A0A9J7FVR7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR7/entry#A0A9J7FVR7-1", "sequence": { "sequence": "MNPPARRSVSRPRARVRPPPPETLPTAGFDDELYDCLDYYYLRDFPASGAGRSKGRTRREQQLRTNYPVPGGHERKVAQTLINAQRKRRQRQLQPRPRTRLT", "length": 102, "header": "tr|A0A9J7FVR7-1|A0A9J7FVR7_CRIGR Isoform 1 of Nuclear protein 2 OS=Cricetulus griseus OX=10029 GN=LOC103164387 PE=3 SV=1 CANONICAL=A0A9J7FVR7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_007647005" } ] } ], "protein_names": [ { "name": "F-box/LRR-repeat protein 18", "type": "synonym", "evidence": [ { "id": "XP_007647005", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647005" }, { "id": "A0A9J7FVT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613618.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647005" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbxl18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22128", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22128", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767914", "url": "https://www.ncbi.nlm.nih.gov/gene/100767914", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767914", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767914", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VLYSECR", "url": "https://omabrowser.org/oma/group/VLYSECR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FVT0", "url": "https://www.orthodb.org/?gene=A0A9J7FVT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647005", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNDAAAAPTAAEAAGDTHLLGFSDEILLHILSHVPSTDLVLNVRRTCRKLSALCLDKSLVHTVLLQKDYQASEDKVKQLVKEIGQEIQQLNLAGCYWLSGSTIEHVARCHSLVKVNLSGCHLTSLRLSKVLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVQELKQTLFTPSYGVVPCCASLQKLLLYFEILDRTREGAVLSGQLMVGQSNVPHYQNLRVFYARLAPGYINQEVVRLYLAVLSDRTPENLHAFLISVPGSFAESGATKNLLDSMARNVALDALQLPKSWLNGSTLLQHMKFNNPFYFSFSRCTLSGGHLIQRVINGGKDLRSLASLNLSGCVHCLSADSLLRKAEDDIDSSILETLVESCCNLHHLNLSAAHHHSSDGLGRHLCQLLARLCHLRSLSLPVCSVADSAPRPDRAPAPPAMHAVPRGFGKKVRIGVQTCPNPFLGQSAPQPASVFWSLLKKLPYLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQNVGDSEVAAIGQLAFLRHLTLAQLPGMLTGSGLVSIGLQCQQLQSLSLANLGMMGKVVYMPALADMLKHCKRLKDLRLEQPYFNANAQFFQALGQCSSLQRLCLVSRSGTLQPDAVLDFMARCLQVVVCHMFTGESLITCKNLQQALLRSFQAERPALNVVIFPLLHEGLTDVIRDVPMVHLDEITLFKSRVAEEPPNLWW", "length": 710, "header": "tr|A0A9J7FVT0-1|A0A9J7FVT0_CRIGR Isoform 1 of F-box/LRR-repeat protein 18 OS=Cricetulus griseus OX=10029 GN=Fbxl18 PE=4 SV=1 CANONICAL=A0A9J7FVT0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0/entry#A0A9J7FVT0-1", "sequence": { "sequence": "MSNDAAAAPTAAEAAGDTHLLGFSDEILLHILSHVPSTDLVLNVRRTCRKLSALCLDKSLVHTVLLQKDYQASEDKVKQLVKEIGQEIQQLNLAGCYWLSGSTIEHVARCHSLVKVNLSGCHLTSLRLSKVLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVQELKQTLFTPSYGVVPCCASLQKLLLYFEILDRTREGAVLSGQLMVGQSNVPHYQNLRVFYARLAPGYINQEVVRLYLAVLSDRTPENLHAFLISVPGSFAESGATKNLLDSMARNVALDALQLPKSWLNGSTLLQHMKFNNPFYFSFSRCTLSGGHLIQRVINGGKDLRSLASLNLSGCVHCLSADSLLRKAEDDIDSSILETLVESCCNLHHLNLSAAHHHSSDGLGRHLCQLLARLCHLRSLSLPVCSVADSAPRPDRAPAPPAMHAVPRGFGKKVRIGVQTCPNPFLGQSAPQPASVFWSLLKKLPYLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQNVGDSEVAAIGQLAFLRHLTLAQLPGMLTGSGLVSIGLQCQQLQSLSLANLGMMGKVVYMPALADMLKHCKRLKDLRLEQPYFNANAQFFQALGQCSSLQRLCLVSRSGTLQPDAVLDFMARCLQVVVCHMFTGESLITCKNLQQALLRSFQAERPALNVVIFPLLHEGLTDVIRDVPMVHLDEITLFKSRVAEEPPNLWW", "length": 710, "header": "tr|A0A9J7FVT0-1|A0A9J7FVT0_CRIGR Isoform 1 of F-box/LRR-repeat protein 18 OS=Cricetulus griseus OX=10029 GN=Fbxl18 PE=4 SV=1 CANONICAL=A0A9J7FVT0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 10, "start_aa": "Thr", "end_pos": 10, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr10", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767914", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767914", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZYA7-1", "protein_name": "F-box and leucine rich repeat protein 18", "gene_name": "FBXL18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASFGEDMSKDGDTPPAAAAVADGAHLLGFSDEILLHILSHIPSTDLVLNVRRTCRKLAALCLDKSLTHTVLLQKDYEASEDKVKQLVREIGREVQQLSMAGCYWLSGATVEHVARCRGLVKVNLAGCHLTSLRLSKVLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVRELKQTLYTPSYGVVPCCTSLEKLLLYFEILDRTREGAVLSGQLMVGQSNVPHYQHLRVFYARLAPGYINQEVVRLYLAVLSDRTPENLHAFLISVPGSFAESGATKNLLESMARNVALDALQLPKSWLNGSALLQHMTFRRPFYFSFSRCALSGGHLIQRVLNGGRDLRSLASLNLSGCVHCLAPDSLLRKAEDDIDSGILETLVAACCNLRHLNLSAAHHHSPEGPGRHLCQLLARLRHLRSLSLPVCAVADSAPRADRAPAQPAMHAVPRGFGKKVRVGVQTCPSPFPGQAGPQPASVFWSLLKSVPFLDRLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSILTGSGLVSIGLQCQQLQSLSLANLGMMGKVVYTSALSDMLQHCKRLKDLRLEQPYFSANAQFFQALSQCSALQRLCLVSRSGTLQPEAVLAFMARCLHVVVCHLFTGESLSTCRSLQQSLLRSFQAERPALNVVVFPLLHEGLTDVIRDVPMVHLDEVTLFKSRVAEEPPNLWW", "length": 717 }, "evidence": [ { "id": "A0A9J7FVT0", "url": "https://omabrowser.org/oma/group/A0A9J7FVT0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F8VQK6-1", "protein_name": "F-box and leucine-rich repeat protein 18", "gene_name": "Fbxl18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSEEEAAAEAAGDTHLLGFSDEILLHILSHVPSTDLVLSVRRTCRKLAALCLDKSLVHTVLLQKDYQASEEKVKQLVKEIGREIQQLNMAGCYWLSGSTIEHVARCHSLVKVNLSGCHLTSLRLSKVLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVQELKQTLFTPSYGVVPCCASLQKLLLYFEILDRTREGAVLSGQLMVGQSNVPHYQNLRVFYARLAPGYINQEVVRLYLAVLSDRTPENLHAFLISVPGSFAESGATKNLLDSMARNVALDALQLPKSWLNGSTLLQHMKFNNPFYFSFSRCTLSGGHLIQRLINGGKDLRSLASLNLSGCVHCLSADSLLRKAEDDIDSSILETLVESCCNLHHLNLSAAHHHSSDGLGRHLCQLLARLCHLRSLSLPVCSVADSAPRPDRAPAPPAMHAVPRGFGKKVRIGVQTCPNPFVGQSAPQPASVFWSLLKKLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQNVGDSEVAAIGQLTFLRHLTLAQLPGMLTGSGLVSIGLQCQHLQSLSLANLGMMGKVVYMPALADMLKHCKRLKDLRLEQPYFNANAQFFQALGQCSSLQRLCLVSRSGTLQPDAVLAFMARCLQVVMCHMFTGESLTTCKSLQQSLLRSFQAERPALNVVIFPLLHEGLTDVIRDVPMLHLDEITLFKSRVAEEPPNLWW", "length": 707 }, "evidence": [ { "id": "A0A9J7FVT0", "url": "https://omabrowser.org/oma/group/A0A9J7FVT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96ME1-4", "protein_name": "F-box/LRR-repeat protein 18", "gene_name": "FBXL18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSGEDISNDDDDMHPAAAGMADGVHLLGFSDEILLHILSHVPSTDLILNVRRTCRKLAALCLDKSLIHTVLLQKDYQASEDKVRQLVKEIGREIQQLSMAGCYWLPGSTVEHVARCRSLVKVNLSGCHLTSLRLSKMLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVRELKQTLFTPSYGVVPCCTSLEKLLLYFEILDRTREGAILSGQLMVGQSNVPHYQNLRVFYARLAPGYINQEVVRLYLAVLSDRTPQNLHAFLISVPGSFAESGATKNLLDSMARNVVLDALQLPKSWLNGSSLLQHMKFNNPFYFSFSRCTLSGGHLIQQVINGGKDLRSLASLNLSGCVHCLSPDSLLRKAEDDIDSSILETLVASCCNLRHLNLSAAHHHSSEGLGRHLCQLLARLRHLRSLSLPVCSVADSAPRADRAPAQPAMHAVPRGFGKKVRVGVQSCPSPFSGQACPQPSSVFWSLLKNLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGLQCQQLRSLSLANLGMMGKVVYMPALSDMLKHCKRLRDLRLEQPYFSANAQFFQALSQCPSLQRLCLVSRSGTLQPDAVLAFMARCLQVVMCHLFTGESLATCKSLQQSLLRSFQAERPALNVVIFPLLHEGLTDVIRDVPLVHLDEITLFKSRVAEEPPNLWW", "length": 718 }, "evidence": [ { "id": "A0A9J7FVT0", "url": "https://omabrowser.org/oma/group/A0A9J7FVT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FVT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT0" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 64, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 10 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 295, "end_pos": 297 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 486, "end_pos": 488 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FVT5-1", "uniprot_ac": "A0A9J7FVT5", "uniprot_id": "A0A9J7FVT5_CRIGR", "mass": { "chemical_mass": 98323.0, "monoisotopic_mass": 98323.0 }, "refseq": { "ac": "XP_003505955", "name": "vomeronasal type-2 receptor 116", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505955" }, "gene_names": [ { "name": "LOC100769409", "type": "recommended", "evidence": [ { "id": "A0A9J7FVT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT5" } ] }, { "name": "LOC100769409", "type": "synonym", "evidence": [ { "id": "XP_003505955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505955" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116", "type": "synonym", "evidence": [ { "id": "A0A9J7FVT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT5/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116", "type": "synonym", "evidence": [ { "id": "XP_003505955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505955" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614197.1) annotated using gene prediction method: Gnomon. 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"A0A9J7FVX1-1", "uniprot_ac": "A0A9J7FVX1", "uniprot_id": "A0A9J7FVX1_CRIGR", "mass": { "chemical_mass": 19337.0, "monoisotopic_mass": 19337.0 }, "refseq": { "ac": "XP_027269282", "name": "AN1-type zinc finger protein 2A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269282" }, "gene_names": [ { "name": "Zfand2a", "type": "recommended", "evidence": [ { "id": "A0A9J7FVX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVX1" } ] }, { "name": "Zfand2a", "type": "synonym", "evidence": [ { "id": "XP_027269282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269282" } ] } ], "protein_names": [ { "name": "AN1-type zinc finger protein 2A", "type": "synonym", "evidence": [ { "id": "XP_027269282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269282" }, { "id": "A0A9J7FVX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVX1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613888.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502322", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502322" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVY4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763198", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVY4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FVY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FVY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763198", "url": "https://www.ncbi.nlm.nih.gov/gene/100763198", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763198", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763198", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVY4", "url": "https://www.orthodb.org/?gene=A0A9J7FVY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502322", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502322", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARQDFQGREDAGKKKDGVARRNQSDTENTIGDFLSKDSNISTRETPITAPNGSIYSDSSYCGIMAKVMFFICFIFALVGMAANAMVLWLLGFRLHRNAFSVYILNLAMADFLFLCFQFIFYLLILINIFYYTISIHILLFFTVVSIFAYFCGLSILSAISIERCLSVMWPIWYRCQRPRHTSAVTCALLWALSLLLTFLDSKACGLLVSSSDMFWCQTFDFIMISWSVALFVALCGSSLTLLVRIVCGSQRIPVTRLYVIIVLTVLFFLIFGLPLGICSVLYKWIWNLYNLKICDFYYVTLFLSCVNSCANPIIYFFVGSIRHHRFQQKSLKLFLQRALQDTPEEEADGERVSSGEPEELDTV", "length": 364, "header": "tr|A0A9J7FVY4-1|A0A9J7FVY4_CRIGR Isoform 1 of Mas-related G-protein coupled receptor member B2 OS=Cricetulus griseus OX=10029 GN=LOC100763198 PE=3 SV=1 CANONICAL=A0A9J7FVY4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVY4/entry#A0A9J7FVY4-1", "sequence": { "sequence": "MARQDFQGREDAGKKKDGVARRNQSDTENTIGDFLSKDSNISTRETPITAPNGSIYSDSSYCGIMAKVMFFICFIFALVGMAANAMVLWLLGFRLHRNAFSVYILNLAMADFLFLCFQFIFYLLILINIFYYTISIHILLFFTVVSIFAYFCGLSILSAISIERCLSVMWPIWYRCQRPRHTSAVTCALLWALSLLLTFLDSKACGLLVSSSDMFWCQTFDFIMISWSVALFVALCGSSLTLLVRIVCGSQRIPVTRLYVIIVLTVLFFLIFGLPLGICSVLYKWIWNLYNLKICDFYYVTLFLSCVNSCANPIIYFFVGSIRHHRFQQKSLKLFLQRALQDTPEEEADGERVSSGEPEELDTV", "length": 364, "header": "tr|A0A9J7FVY4-1|A0A9J7FVY4_CRIGR Isoform 1 of Mas-related G-protein coupled receptor member B2 OS=Cricetulus griseus OX=10029 GN=LOC100763198 PE=3 SV=1 CANONICAL=A0A9J7FVY4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613596.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW26" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW26" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771159", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771159", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW26" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hormone-mediated signaling pathway", "id": "GO:0009755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009755", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FW37-1", "uniprot_ac": "A0A9J7FW37", "uniprot_id": "A0A9J7FW37_CRIGR", "mass": { "chemical_mass": 405149.0, "monoisotopic_mass": 405149.0 }, "refseq": { "ac": "XP_027266481", "name": "zinc finger protein 469", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266481" }, "gene_names": [ { "name": "Znf469", "type": "recommended", "evidence": [ { "id": "A0A9J7FW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" } ] }, { "name": "Znf469", "type": "synonym", "evidence": [ { "id": "XP_027266481", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266481" } ] } ], "protein_names": [ { "name": "Zinc finger protein 469", "type": "synonym", "evidence": [ { "id": "A0A9J7FW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 469", "type": "synonym", "evidence": [ { "id": "XP_027266481", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266481" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266481" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf469", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37", "locus": {} } ], "crossref": [ { "id": "100755135", "url": "https://www.ncbi.nlm.nih.gov/gene/100755135", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755135", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755135", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FW37", "url": "https://www.orthodb.org/?gene=A0A9J7FW37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21465", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21465", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21465:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21465:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027266481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266481", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGERPPTLPRDLQLCQVASSLGGHSQHPLKDHSSSSRTTQGMRDEGSKGQAQGSPEAQLSQAKEVEPEDLLLRMQATAGQSCVQAYSWLGSGMESSHPQLHNLSTSRIRCILNEPPKNLQHGAPQVSETKAPRLQKTRARHRPSIPKAEALPSPEENGSQRCFQEAPSSFTSTNCTSPSATPGTLPQRTPQSSGTSPHRPASGPNVQAIGTNPWPPAAENSFLGANFGVPSAEPKPFPEGSRPSSPQGVSVPYPFPVETAQHEQAAGTVLYTFHQPLVAWSEGALGTNPAYPSLSCNPSQSGGASTSSDLGGTLSPPGAAHLVPSPFHDSLHKSLTKGLPEGPPPIHDRLGSPRGPPNPPPQRHFPGQGYGANGVGTSPVPLDTELPTPGPPPTHLPQLWDSSAVSYPRSTLGPAVAARIAFFEGQQLCLPQSPPLPWSPVLTAPRPSSHQMGVLSQLGFPRGSSEWQGDSQRALNALNTISRPGETSSALRSSPGQPSSSPRLLAYGGLKDPGTQSLFFGGTQPQMSPQGALSLPPPRVMGASPSESPLPSPATNTASSSTCSSLSPPSSSPANPSSEESQQPGPLRTSAFFLPTTHSQETSNPFPSPEPTHPTCYQSESAKAFPLPTEGPGTEDAFKSLEGVPFPHKSPSLGRDRSQGFPSEPPQYSAQHFSLSSASLDQLDVLLTCKQCDRNYSSLAAFLEHRPFCSLLLAKTKDGSLQPPGLPTPTTTSKAPTDAHSGLLEHNQTAPFLLTRDDQGDSKDDSLRTSFLPAGLAVTPFPLPTSDLDMEDDAKLDRLITEALNGMEYHSDNPEIDSSFIDVFADEEPSGSRGPSAGHSLNTQVGATPKNGTQSQLPSRVVMPEPQVPCTGDRGCSSRNRPKTRSLGLASAEADTTTLVKQQRRGKQFKLFQKEPSVTKGTNNPARVICLRPRKKGHSAEQPRPQDRRRRARKVHAHADHSIPRAASKETRSSKHLQLPSGKDPRKRRGRGGSWSKELIHKIVQQKNRCHRRQAPRGQVSHVSLLPARPPSTQKGRVKGQGCASESEEEGGVQQQDLGDPVQDCSRHSRQRWRQGKKRKKEDLAQDPRKVMRQEAGENRGFLSPKRTHSLQQSLDAREVPVQRGPEHTDRPTATPKHPAQVLTTTKTQEEAALDFPQEVKKLEVAAEFHPDITELKERSGSLASCGGESPRPAAPVPTQAGGPSHPETLSGKSIPATDAGCLLGTSGCMKPPSLHTREDSSAPQPGGCLAPIDKVADAFYTESGIPVFKNSGSGCEPDHCDRHSIGCPAAKRGPLPNSDTPCELFLVSKDIANCFPEDSCSKPLAMDTLPASSCYLGQDSMENLESTPPKNPPYPVEIDPGKVHSPLTLESTSLFTGLPEDGFDPPLYESLSANRVTHAPLVCTGPLPKKLLTDPLYPPFLLLEEASPVLPGPFPGPSKGKAPSKKCSFEQTVPPSLPPGPEKGSDCSVTLMSNLCEDELEIKRLVTELESQLQGKGSTQGALGEPEEAANEGRMDPSPRQASLLPTFQATSPHRDILSAANLTGLEGSSSQQEGALRNPQKQWSYLASCHTGKATPPPGTQEDPGSGAPLSPAGFSLSFGQLQEASISNTDCQVPISDHLPNSNRQQAPLLHVESSAKHRSNPELLFSKNNEASATQENAPLLLPDKHTRGHSPDSCEAQEPCPSSSALEGFNSPSAYLGLEPNLMLKGDEGVTSPPSVSPSHGSKGHLESQAGSPKETMLTSPTAKDPGFMGESVPAGASPLSTLPSGKAWSHPMPDPSWVTGAPQEPACGSFPLLQDARAESEDNTQGLQPGDPSEASTLGAVKMSALTTDIQKQLRSKAVGHMGTPGQSKKTKGRGHSNRLRTNNWRSLGNPDALTKVRTHLEVRPARSRGACQGSRAARGFRKQALPSTSPTHPDGTPSISTLTAFPLQMEPAERSPEQSASPQLPAPSSSGLATCALSATSPATPTPNDLEPLPQEDPGTRVKPTGPPAPSSYRDLLIPYHQPAYTVLAPLGKTSCGQATKDAGSLTTPTSPITSHCGSEETLSHHSLLGTSSPKDPPLGPLGPTSFSDPVMLDSESPKGITVGTLEDSRKEELRTSPAHATAPPPGGPSSPKITINDGPLTGIPTKDDLHSDERLEVPDPHCKVIPPLSSPERTCCKDPSLRPQSSTPCPGHRESHSIIAVPTDFATLGTTTPDSQICRDEAATSIEEQDNPETPGAIHCDVTKVPRANARGMPTGLGLALTASLSCTETDFRSESPQHHTSISHHSLQKNPFSPQESKQRPRGMKKKPEPTEKIPAGPLMTCELCSASFLSRAGLSRHKARKHRPLGKTSSQLSPVILPTCQPQDSMTQVCQTPGKKSCKVIGKGRPSHSPLGPGHFSQPPPLQASITPEDNMGPELLKVTSGKSEGPRTPDTPLNQQPHTPGLIEQRKGTKVPASKPRKPHGWQAHQLHPNQGEMRSQRQDGEPADSPSSSERKSNRKGGKLRVRREKHGPGNTAHVTSDRDLSDPSATCDNHLIPLSLSPEGECRTSLRPPALSPTVGPRALEDAADMGTGALCTKEMPAEKAPQEWQVCQGTIEREHPKEQKADWVQWFWGPGEARALDISGEPSQAIESQPAEDSRGAKGRSDEGTGKGTSDLPDSTHGLEVDNTINSCSQSPINDPETLSGNLGPKGTTPEASSPGPREPLDLFDDEVSFSQLFPLDGRLTRKKNLRVYGKRCKKPKCPPKEPSSEVVHNAPLFSTRLPTDLSDSGSLCLSHEEEGLWDDEALSLPESLLLDRLLSSKAPGLDPWTPSFSLWAPDNREASYMEEGPSCFTENQDEWSEAIPQLHMVPAAWRDLELCSPACETPSSLGDMSPEPPNLEREHDVRLSGNASLPPLYIKDFEVLSTQLEIQDLCFLGPCDDLADLPNPGILDFQATANSQGPPNKRIEEAARARGTKGRDRPVKGRRASYKCRVCFQRFHSLGELDLHKLAHSPSPPPTCYMCVERRFSSRELLREHLWEKHVQGKAGPWACGMCLKEVADVWMYNQHLREHAARFARNGQTRRDLPGCLEGESTLTHFLNSIVEQASKPQRTEHSIGKASREALEQEGEAGKKIPRRRVKQKVPTTVTSSQDGTLLSLSPSTEAGSPSILTSSSGSAKTPPTPSPDPWFHSDSPLQAVPVHEDCKDPSRDCHHCGKQFPKPFKLQRHLAVHSPQRVYLCPQCPQIYPEHWELRVHLSLTHRVKEERELPHMPLYACELCANVMHVIRRSFVCSSCNYTFAKKEQFDRHMDKHLRSGQQPFTLRSVRRPGVPGKKTQVPQDMLPSKRHGVVVPSSTDRVPSTSSPTPSEGCLPALPLICSETAPSPILDQPSSQERPVDQTNHSLKGNNPPLTDQDLPPPSLSPFPAASAEGTGVCKPDRALEKPENQASLGSLEPCKWQTPPGEKRSLHLFSGKHRSLGTGGKCAPGCSPGDPSQLQKERLVTTHHMVPEGKIEVSSQKGSATKQGACLSSSKHGSAVPPSKVLKLPAPSRKPIGMGTPASGELGQSPEDRVKPSTSKAKLRPSSQGSGGLQPGTQTGGGSQPQPTSGQLQSEMASTPTEPSCLSWESSTPDQPPPQVHTKGSARGSRETEHQGVQVHSSPREKRENSEKKRKGQALGLARQGSMGNMGRVPSAPDKSSRAPRKQATPSRVPPVKSRPSSQSGRTRPQPSAQKKGDLGHTSEKGSFPQARLLSRPYKRVRAVYGVEHMEPRDHRTAEAQSDLLSQLFGQKLTSFKIPLKKDNSQ", "length": 3777, "header": "tr|A0A9J7FW37-1|A0A9J7FW37_CRIGR Isoform 1 of Zinc finger protein 469 OS=Cricetulus griseus OX=10029 GN=Znf469 PE=4 SV=1 CANONICAL=A0A9J7FW37-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FW37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37/entry#A0A9J7FW37-1", "sequence": { "sequence": "MPGERPPTLPRDLQLCQVASSLGGHSQHPLKDHSSSSRTTQGMRDEGSKGQAQGSPEAQLSQAKEVEPEDLLLRMQATAGQSCVQAYSWLGSGMESSHPQLHNLSTSRIRCILNEPPKNLQHGAPQVSETKAPRLQKTRARHRPSIPKAEALPSPEENGSQRCFQEAPSSFTSTNCTSPSATPGTLPQRTPQSSGTSPHRPASGPNVQAIGTNPWPPAAENSFLGANFGVPSAEPKPFPEGSRPSSPQGVSVPYPFPVETAQHEQAAGTVLYTFHQPLVAWSEGALGTNPAYPSLSCNPSQSGGASTSSDLGGTLSPPGAAHLVPSPFHDSLHKSLTKGLPEGPPPIHDRLGSPRGPPNPPPQRHFPGQGYGANGVGTSPVPLDTELPTPGPPPTHLPQLWDSSAVSYPRSTLGPAVAARIAFFEGQQLCLPQSPPLPWSPVLTAPRPSSHQMGVLSQLGFPRGSSEWQGDSQRALNALNTISRPGETSSALRSSPGQPSSSPRLLAYGGLKDPGTQSLFFGGTQPQMSPQGALSLPPPRVMGASPSESPLPSPATNTASSSTCSSLSPPSSSPANPSSEESQQPGPLRTSAFFLPTTHSQETSNPFPSPEPTHPTCYQSESAKAFPLPTEGPGTEDAFKSLEGVPFPHKSPSLGRDRSQGFPSEPPQYSAQHFSLSSASLDQLDVLLTCKQCDRNYSSLAAFLEHRPFCSLLLAKTKDGSLQPPGLPTPTTTSKAPTDAHSGLLEHNQTAPFLLTRDDQGDSKDDSLRTSFLPAGLAVTPFPLPTSDLDMEDDAKLDRLITEALNGMEYHSDNPEIDSSFIDVFADEEPSGSRGPSAGHSLNTQVGATPKNGTQSQLPSRVVMPEPQVPCTGDRGCSSRNRPKTRSLGLASAEADTTTLVKQQRRGKQFKLFQKEPSVTKGTNNPARVICLRPRKKGHSAEQPRPQDRRRRARKVHAHADHSIPRAASKETRSSKHLQLPSGKDPRKRRGRGGSWSKELIHKIVQQKNRCHRRQAPRGQVSHVSLLPARPPSTQKGRVKGQGCASESEEEGGVQQQDLGDPVQDCSRHSRQRWRQGKKRKKEDLAQDPRKVMRQEAGENRGFLSPKRTHSLQQSLDAREVPVQRGPEHTDRPTATPKHPAQVLTTTKTQEEAALDFPQEVKKLEVAAEFHPDITELKERSGSLASCGGESPRPAAPVPTQAGGPSHPETLSGKSIPATDAGCLLGTSGCMKPPSLHTREDSSAPQPGGCLAPIDKVADAFYTESGIPVFKNSGSGCEPDHCDRHSIGCPAAKRGPLPNSDTPCELFLVSKDIANCFPEDSCSKPLAMDTLPASSCYLGQDSMENLESTPPKNPPYPVEIDPGKVHSPLTLESTSLFTGLPEDGFDPPLYESLSANRVTHAPLVCTGPLPKKLLTDPLYPPFLLLEEASPVLPGPFPGPSKGKAPSKKCSFEQTVPPSLPPGPEKGSDCSVTLMSNLCEDELEIKRLVTELESQLQGKGSTQGALGEPEEAANEGRMDPSPRQASLLPTFQATSPHRDILSAANLTGLEGSSSQQEGALRNPQKQWSYLASCHTGKATPPPGTQEDPGSGAPLSPAGFSLSFGQLQEASISNTDCQVPISDHLPNSNRQQAPLLHVESSAKHRSNPELLFSKNNEASATQENAPLLLPDKHTRGHSPDSCEAQEPCPSSSALEGFNSPSAYLGLEPNLMLKGDEGVTSPPSVSPSHGSKGHLESQAGSPKETMLTSPTAKDPGFMGESVPAGASPLSTLPSGKAWSHPMPDPSWVTGAPQEPACGSFPLLQDARAESEDNTQGLQPGDPSEASTLGAVKMSALTTDIQKQLRSKAVGHMGTPGQSKKTKGRGHSNRLRTNNWRSLGNPDALTKVRTHLEVRPARSRGACQGSRAARGFRKQALPSTSPTHPDGTPSISTLTAFPLQMEPAERSPEQSASPQLPAPSSSGLATCALSATSPATPTPNDLEPLPQEDPGTRVKPTGPPAPSSYRDLLIPYHQPAYTVLAPLGKTSCGQATKDAGSLTTPTSPITSHCGSEETLSHHSLLGTSSPKDPPLGPLGPTSFSDPVMLDSESPKGITVGTLEDSRKEELRTSPAHATAPPPGGPSSPKITINDGPLTGIPTKDDLHSDERLEVPDPHCKVIPPLSSPERTCCKDPSLRPQSSTPCPGHRESHSIIAVPTDFATLGTTTPDSQICRDEAATSIEEQDNPETPGAIHCDVTKVPRANARGMPTGLGLALTASLSCTETDFRSESPQHHTSISHHSLQKNPFSPQESKQRPRGMKKKPEPTEKIPAGPLMTCELCSASFLSRAGLSRHKARKHRPLGKTSSQLSPVILPTCQPQDSMTQVCQTPGKKSCKVIGKGRPSHSPLGPGHFSQPPPLQASITPEDNMGPELLKVTSGKSEGPRTPDTPLNQQPHTPGLIEQRKGTKVPASKPRKPHGWQAHQLHPNQGEMRSQRQDGEPADSPSSSERKSNRKGGKLRVRREKHGPGNTAHVTSDRDLSDPSATCDNHLIPLSLSPEGECRTSLRPPALSPTVGPRALEDAADMGTGALCTKEMPAEKAPQEWQVCQGTIEREHPKEQKADWVQWFWGPGEARALDISGEPSQAIESQPAEDSRGAKGRSDEGTGKGTSDLPDSTHGLEVDNTINSCSQSPINDPETLSGNLGPKGTTPEASSPGPREPLDLFDDEVSFSQLFPLDGRLTRKKNLRVYGKRCKKPKCPPKEPSSEVVHNAPLFSTRLPTDLSDSGSLCLSHEEEGLWDDEALSLPESLLLDRLLSSKAPGLDPWTPSFSLWAPDNREASYMEEGPSCFTENQDEWSEAIPQLHMVPAAWRDLELCSPACETPSSLGDMSPEPPNLEREHDVRLSGNASLPPLYIKDFEVLSTQLEIQDLCFLGPCDDLADLPNPGILDFQATANSQGPPNKRIEEAARARGTKGRDRPVKGRRASYKCRVCFQRFHSLGELDLHKLAHSPSPPPTCYMCVERRFSSRELLREHLWEKHVQGKAGPWACGMCLKEVADVWMYNQHLREHAARFARNGQTRRDLPGCLEGESTLTHFLNSIVEQASKPQRTEHSIGKASREALEQEGEAGKKIPRRRVKQKVPTTVTSSQDGTLLSLSPSTEAGSPSILTSSSGSAKTPPTPSPDPWFHSDSPLQAVPVHEDCKDPSRDCHHCGKQFPKPFKLQRHLAVHSPQRVYLCPQCPQIYPEHWELRVHLSLTHRVKEERELPHMPLYACELCANVMHVIRRSFVCSSCNYTFAKKEQFDRHMDKHLRSGQQPFTLRSVRRPGVPGKKTQVPQDMLPSKRHGVVVPSSTDRVPSTSSPTPSEGCLPALPLICSETAPSPILDQPSSQERPVDQTNHSLKGNNPPLTDQDLPPPSLSPFPAASAEGTGVCKPDRALEKPENQASLGSLEPCKWQTPPGEKRSLHLFSGKHRSLGTGGKCAPGCSPGDPSQLQKERLVTTHHMVPEGKIEVSSQKGSATKQGACLSSSKHGSAVPPSKVLKLPAPSRKPIGMGTPASGELGQSPEDRVKPSTSKAKLRPSSQGSGGLQPGTQTGGGSQPQPTSGQLQSEMASTPTEPSCLSWESSTPDQPPPQVHTKGSARGSRETEHQGVQVHSSPREKRENSEKKRKGQALGLARQGSMGNMGRVPSAPDKSSRAPRKQATPSRVPPVKSRPSSQSGRTRPQPSAQKKGDLGHTSEKGSFPQARLLSRPYKRVRAVYGVEHMEPRDHRTAEAQSDLLSQLFGQKLTSFKIPLKKDNSQ", "length": 3777, "header": "tr|A0A9J7FW37-1|A0A9J7FW37_CRIGR Isoform 1 of Zinc finger protein 469 OS=Cricetulus griseus OX=10029 GN=Znf469 PE=4 SV=1 CANONICAL=A0A9J7FW37-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1200, "start_aa": "Thr", "end_pos": 1200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1200", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 182, "start_aa": "Thr", "end_pos": 182, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr182", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2548, "start_aa": "Thr", "end_pos": 2548, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2548", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3155, "start_aa": "Thr", "end_pos": 3155, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3155", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3338, "start_aa": "Thr", "end_pos": 3338, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3338", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3579, "start_aa": "Thr", "end_pos": 3579, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3579", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 389, "start_aa": "Thr", "end_pos": 389, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr389", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755135", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755135", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1544, "end_pos": 1546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2882, "end_pos": 2884, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3269, "end_pos": 3271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3374, "end_pos": 3376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" }, { "start_pos": 748, "end_pos": 750, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW37" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 2310, "end_pos": 2333, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 182, 389, 1200, 2548, 3155, 3338, 3579 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1544, "end_pos": 1546 }, { "start_pos": 158, "end_pos": 160 }, { "start_pos": 175, "end_pos": 177 }, { "start_pos": 2882, "end_pos": 2884 }, { "start_pos": 3269, "end_pos": 3271 }, { "start_pos": 3374, "end_pos": 3376 }, { "start_pos": 696, "end_pos": 698 }, { "start_pos": 748, "end_pos": 750 }, { "start_pos": 852, "end_pos": 854 } ] }, "class_list": [], "section_stats": 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{ "isoform_ac": "A0A9J7FW42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW42/entry#A0A9J7FW42-1", "sequence": { "sequence": "MCVPESARREPEETMVARRLLLVGEGNFSFTASLIDTLDPGVRVTATCLQHPADLEGDPVIQENLQRLRQRGVEVRFGVDCTQLARALQAHERDFDRIYFNFPHCGRKAGVAKNRKLLAMFFQSCADVLAKEGEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVYPFSCEAVPGYTCTGYRSQAKSFRVEGAVNHVFTQSSPLEGCQPRAFRVRLGDQCFSCTEPEALAGKLNRRFLEASSCHPVKIINEKLITELSKHFPLKRLKCSFPLLSEGGTSVLPPGTCDPQPAFWVSLHGDKSYSESLTGEMTQEMEDVLLSFSELALPKSPGRDSCKAAQEGTREQAKLCLRSSLLAHVETVIQSPDFLPGSLHILSGPVFRKCHILPFMMPAFHETLLILGLNKNRKDSCLASLLDHLKDSLDNLLTETLLEGSSLSTSVEFVLQPNGKDHIIHVKSLNFGPDCMEHLIIGTIITSTAVTHKHQCFVFVSINLDLLAMLVYDISDWRILWTFDNRFLKRFVPGKIERFKSYSLYPPCYVHDISFWLDEKKGFDELEFHTIARAVSQDTVISIQFLGRFQHPETEQVSLCYRLIYQACDKALSPQLAAAMQSQFRREIQKQLHVSPR", "length": 636, "header": "tr|A0A9J7FW42-1|A0A9J7FW42_CRIGR Isoform 1 of Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Fdxacb1 PE=4 SV=1 CANONICAL=A0A9J7FW42-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 146, "start_aa": "Thr", "end_pos": 146, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr146", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW42" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771758", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771758", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW42" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "rRNA (uridine-N3-)-methyltransferase activity", "id": "GO:0070042", "url": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052588", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052588", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768960", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FW48", "url": "https://www.orthodb.org/?gene=A0A9J7FW48", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46063", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46063", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46063:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46063:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266499", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266499", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FW48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKKTQVTETPCSPPTPRLNASLSAHPEKDELILFGGEYFNGQKTFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYSDVYTFSLDTFLWSKLSPSGPGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLLKPEEAGEGKWTWTRINPSGVKPTPRSGFSVAMAPNHQILFFGGVCDEEEEESLEGSFFNDLYVYDAARSRWFTAQLKGPKSDKKKRRRGKVEEQEGATEQENGATGAPEPLEVIKEVVAEDGTVITIKQVLAPSGLVPQAPPKPEDSAVEASSAGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTLSDLYCLDLHKMEEWRTLVEMDPKSQEWLEETDSEEDSSSDEEGAEGGDKDQEEDSSEDSAEEGADPQHPEVAPGEQYEEYLSRTEQYWLKLARNHMGPDAKEKKVLKVAQAMAKAFMDDAVQDIAQAKH", "length": 589, "header": "tr|A0A9J7FW48-1|A0A9J7FW48_CRIGR Isoform 1 of Kelch domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Klhdc4 PE=4 SV=1 CANONICAL=A0A9J7FW48-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FW48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48/entry#A0A9J7FW48-1", "sequence": { "sequence": "MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKKTQVTETPCSPPTPRLNASLSAHPEKDELILFGGEYFNGQKTFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYSDVYTFSLDTFLWSKLSPSGPGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLLKPEEAGEGKWTWTRINPSGVKPTPRSGFSVAMAPNHQILFFGGVCDEEEEESLEGSFFNDLYVYDAARSRWFTAQLKGPKSDKKKRRRGKVEEQEGATEQENGATGAPEPLEVIKEVVAEDGTVITIKQVLAPSGLVPQAPPKPEDSAVEASSAGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTLSDLYCLDLHKMEEWRTLVEMDPKSQEWLEETDSEEDSSSDEEGAEGGDKDQEEDSSEDSAEEGADPQHPEVAPGEQYEEYLSRTEQYWLKLARNHMGPDAKEKKVLKVAQAMAKAFMDDAVQDIAQAKH", "length": 589, "header": "tr|A0A9J7FW48-1|A0A9J7FW48_CRIGR Isoform 1 of Kelch domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Klhdc4 PE=4 SV=1 CANONICAL=A0A9J7FW48-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48/entry#A0A9J7JJI9-1", "sequence": { "sequence": "MYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYSDVYTFSLDTFLWSKLSPSGPGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLLKPEEAGEGKWTWTRINPSGVKPTPRSGFSVAMAPNHQILFFGGVCDEEEEESLEGSFFNDLYVYDAARSRWFTAQLKGPKSDKKKRRRGKVEEQEGATEQENGATGAPEPLEVIKEVVAEDGTVITIKQVLAPSGLVPQAPPKPEDSAVEASSAGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTLSDLYCLDLHKMEEWRTLVEMDPKSQEWLEETDSEEDSSSDEEGAEGGDKDQEEDSSEDSAEEGADPQHPEVAPGEQYEEYLSRTEQYWLKLARNHMGPDAKEKKVLKVAQAMAKAFMDDAVQDIAQAKH", "length": 497, "header": "tr|A0A9J7JJI9-1|A0A9J7JJI9_CRIGR Computationally mapped isoform of Kelch domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Klhdc4 PE=4 SV=1 CANONICAL=A0A9J7FW48-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 229, "start_aa": "Thr", "end_pos": 229, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr229", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 294, "start_aa": "Thr", "end_pos": 294, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr294", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW48" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 229, 294 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FW64-1", "uniprot_ac": "A0A9J7FW64", "uniprot_id": "A0A9J7FW64_CRIGR", "mass": { "chemical_mass": 34616.0, "monoisotopic_mass": 34616.0 }, "refseq": { "ac": "XP_007652766", "name": "olfactory receptor 10S1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652766" }, "gene_names": [ { "name": "LOC100760073", "type": "recommended", "evidence": [ { "id": "A0A9J7FW64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64" } ] }, { "name": "LOC100760073", "type": "synonym", "evidence": [ { "id": "XP_007652766", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652766" } ] } ], "protein_names": [ { "name": "Olfactory receptor 10S1", "type": "synonym", "evidence": [ { "id": "A0A9J7FW64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 10S1", "type": "synonym", "evidence": [ { "id": "XP_007652766", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652766" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616619.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652766", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652766" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760073", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64", "locus": {} } ], "crossref": [ { "id": "A0A9J7FW64", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FW64", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760073", "url": "https://www.ncbi.nlm.nih.gov/gene/100760073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760073", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760073", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FW64", "url": "https://www.orthodb.org/?gene=A0A9J7FW64", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652766", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652766", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FW64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVKIEYLNQTMVSHFFLEGLMYTAEHPGLFFLLFILIYSITVTGNLLILLTVGSDPHLHSPMYHFLGHLSFLDACLSTVTVPKVMAGLLTLDGKMISFQGCAVQLYCFHFLASTECFLYTVMAYDRYLAICQPLHYPVAMNRRVCAGLAGSTWTIGAMHSAIHTSLTFRLLYCGPHHIAYFFCDIPPVLKLACADTTINELIMLANIGVVAAGCLILIIISYVFIVAAVLRIRTAEGRRRAFSTCTAHLTVVLLYYMPPVCIYLQPSSTGAGAGAPAVFYTIVTPMLNPFIYTLRNKEVKQALRRLVCRGF", "length": 312, "header": "tr|A0A9J7FW64-1|A0A9J7FW64_CRIGR Isoform 1 of Olfactory receptor 10S1 OS=Cricetulus griseus OX=10029 GN=LOC100760073 PE=3 SV=1 CANONICAL=A0A9J7FW64-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FW64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW64/entry#A0A9J7FW64-1", "sequence": { "sequence": "MAVKIEYLNQTMVSHFFLEGLMYTAEHPGLFFLLFILIYSITVTGNLLILLTVGSDPHLHSPMYHFLGHLSFLDACLSTVTVPKVMAGLLTLDGKMISFQGCAVQLYCFHFLASTECFLYTVMAYDRYLAICQPLHYPVAMNRRVCAGLAGSTWTIGAMHSAIHTSLTFRLLYCGPHHIAYFFCDIPPVLKLACADTTINELIMLANIGVVAAGCLILIIISYVFIVAAVLRIRTAEGRRRAFSTCTAHLTVVLLYYMPPVCIYLQPSSTGAGAGAPAVFYTIVTPMLNPFIYTLRNKEVKQALRRLVCRGF", "length": 312, "header": "tr|A0A9J7FW64-1|A0A9J7FW64_CRIGR Isoform 1 of Olfactory receptor 10S1 OS=Cricetulus griseus OX=10029 GN=LOC100760073 PE=3 SV=1 CANONICAL=A0A9J7FW64-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613889.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831005" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Creg1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3N1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3N1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767565", "url": "https://www.ncbi.nlm.nih.gov/gene/100767565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767565", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AQTPYCR", "url": "https://omabrowser.org/oma/group/AQTPYCR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G3N1", "url": "https://www.orthodb.org/?gene=A0A9J7G3N1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HE67", "url": "https://www.orthodb.org/?gene=G3HE67", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13343:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13343:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13883", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13883", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016831005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831005", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HE67", "url": "https://www.uniprot.org/uniprotkb/G3HE67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HE67-1", "url": "https://www.uniprot.org/uniprotkb/G3HE67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARRALGPARSLLAALLAPALVALLVSPARGRGGLDHGDWDVDRRLPPLPPRDDAPRVARFVTHVSDWGAVATISTLEAVRGRSFADVISFSDGPPGAGSGVPYMYLSPLQQLVSDLQENPQATLTLSLAQTVFCRKHGFDPQSPLCVHIMLSGTVTKVNEKEADYAKNSLFLRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKVVTPEEYFNVTLQLERQLSSPRFGPHYHLVRV", "length": 239, "header": "tr|A0A9J7G3N1-1|A0A9J7G3N1_CRIGR Isoform 1 of Protein CREG1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Creg1 PE=3 SV=1 CANONICAL=A0A9J7G3N1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1/entry#A0A9J7G3N1-1", "sequence": { "sequence": "MARRALGPARSLLAALLAPALVALLVSPARGRGGLDHGDWDVDRRLPPLPPRDDAPRVARFVTHVSDWGAVATISTLEAVRGRSFADVISFSDGPPGAGSGVPYMYLSPLQQLVSDLQENPQATLTLSLAQTVFCRKHGFDPQSPLCVHIMLSGTVTKVNEKEADYAKNSLFLRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKVVTPEEYFNVTLQLERQLSSPRFGPHYHLVRV", "length": 239, "header": "tr|A0A9J7G3N1-1|A0A9J7G3N1_CRIGR Isoform 1 of Protein CREG1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Creg1 PE=3 SV=1 CANONICAL=A0A9J7G3N1-1" }, "locus": {} }, { "isoform_ac": "G3HE67-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N1/entry#G3HE67-1", "sequence": { "sequence": "MARRALGPARSLLAALLAPALVALLVSPARGRGGLDHGDWDVDRRLPPLPPRDDAPRVARFVTHVSDWGAVATISTLEAVRGRSFADVISFSDGPPGAGSGVPYMYLSPLQQLVSDLQENPQATLTLSLAQTVFCRKHGFDPQSPLCVHIMLSGTVTKVNEKEADYAKNSLFLRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKVVTPEEYFNVTLQ", "length": 220, "header": "tr|G3HE67-1|A0A9J7G3N1_CRIGR Computationally mapped isoform of Protein CREG1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Creg1 PE=3 SV=1 CANONICAL=A0A9J7G3N1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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} ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B2GUX7-1", "protein_name": "Cellular repressor of E1A-stimulated genes 1", "gene_name": "Creg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWGNWPSDKKWRWVLAYTPATHTCSHDWHTAEESYPSYVTKPKKATCHQINTSEPLQEQITRLREHMHLETGQHWSHAPSGLLLSDWPSRGGGTLACNSYGGRVWSQSRCSAVSAMAARAPELARSLLAALLAPALVALLVSPAWGRGGRDHGDWDVDRRLPPLPPRDDGPRVARFVTHVSDWGSLATISTREEVRGRPFADIISISDGPPGEGSGEPYMYLSPLQQAVSDLQGNPEATLTMSLAQTAYCRNHGFDPQSPLCVHIMMSGTVIKVNETEEGYARDSLFIRHPEMKHWPPSHKWFFAKLKISNIWVLDYFGGPKVVTPEEYFNVTLQ", "length": 335 }, "evidence": [ { "id": "A0A9J7G3N1", "url": "https://omabrowser.org/oma/group/A0A9J7G3N1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MX50-1", "protein_name": "Cellular repressor of E1A stimulateds 1", "gene_name": "CREG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGCACGFVRAVLAFLLAPALVTLLVAPARGRGGRGHGDWDAAELLLPPLPPRENAALVARFVTNVCDWGALATISTQEGVRGRPFADVLSLSDGPPGKGSGVPYFYLSPLQQSVGNLQENPYATLTMSLAETNFCRKYGFDPQSPLCAHIILSGTVIKVSETEMDVAKNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPAEYYNATSQ", "length": 221 }, "evidence": [ { "id": "A0A9J7G3N1", "url": "https://omabrowser.org/oma/group/A0A9J7G3N1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1S268-1", "protein_name": "Cellular repressor of E1A stimulateds 1", "gene_name": "CREG1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGRARGSARAVLAFLLAPALVALLVTPARGRSGQGHGHWDATGLLPPLPPRENAALVARFVTNLCDWGALATISTQEGVRGRPFADVLSLSDGPPGKGTGVLYFYLSPLQQSVGNLQDNPYATLTMSLAETSFCRKYGFDPQSPLCAHTILSGTVIKVSEAEMDVAKNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNATFQYS", "length": 222 }, "evidence": [ { "id": "A0A9J7G3N1", "url": "https://omabrowser.org/oma/group/A0A9J7G3N1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G493-1", "uniprot_ac": "A0A9J7G493", "uniprot_id": "A0A9J7G493_CRIGR", "mass": { "chemical_mass": 24767.0, "monoisotopic_mass": 24767.0 }, "refseq": { "ac": "XP_016831448", "name": "ADP-ribosylation factor-related protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831448" }, "gene_names": [ { "name": "Arfrp1", "type": "recommended", "evidence": [ { "id": "A0A9J7G493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493" } ] }, { "name": "Arfrp1", "type": "synonym", "evidence": [ { "id": "XP_016831448", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831448" } ] } ], "protein_names": [ { "name": "ADP-ribosylation factor-related protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016831448", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831448" }, { "id": "A0A9J7G493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831448" } ] }, { "annotation": "Trans-Golgi-associated GTPase that regulates protein sorting. Controls the targeting of ARL1 and its effector to the trans-Golgi. Required for the lipidation of chylomicrons in the intestine and required for VLDL lipidation in the liver.", "evidence": [ { "database": "UniProtKB", "id": "G3HGZ8", "url": "https://www.uniprot.org/uniprotkb/G3HGZ8#function" }, { "database": "UniProtKB", "id": "ARBA00037377", "url": "https://www.uniprot.org/uniprotkb/ARBA00037377#function" }, { "database": "UniProtKB", "id": "A0A9J7G3Y7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y7#function" }, { "database": "UniProtKB", "id": "A0A9J7G7I4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G493", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arfrp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493", "locus": {} } ], "crossref": [ { "id": "cd04160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762329", "url": "https://www.ncbi.nlm.nih.gov/gene/100762329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762329", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HGFYKYM", "url": "https://omabrowser.org/oma/group/HGFYKYM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G366", "url": "https://www.orthodb.org/?gene=A0A9J7G366", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G3Y7", "url": "https://www.orthodb.org/?gene=A0A9J7G3Y7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G432", "url": "https://www.orthodb.org/?gene=A0A9J7G432", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G493", "url": "https://www.orthodb.org/?gene=A0A9J7G493", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G7I4", "url": "https://www.orthodb.org/?gene=A0A9J7G7I4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JTW5", "url": "https://www.orthodb.org/?gene=A0A9J7JTW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HGZ8", "url": "https://www.orthodb.org/?gene=G3HGZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45909", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45909", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45909:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45909:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016831448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831448", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G366", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G366-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G366-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3Y7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G432", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G432-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G432-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G493", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G493-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7I4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7I4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HGZ8", "url": "https://www.uniprot.org/uniprotkb/G3HGZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HGZ8-1", "url": "https://www.uniprot.org/uniprotkb/G3HGZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEPAVMNKTWCKAPHLLLSSEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 220, "header": "tr|A0A9J7G493-1|A0A9J7G493_CRIGR Isoform 1 of ADP-ribosylation factor-related protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G366-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7G366-1", "sequence": { "sequence": "MSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEPAVMNKTWCKAPHLLLSSEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 173, "header": "tr|A0A9J7G366-1|A0A9J7G366_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7G3Y7-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVEQRSPRGHRMDGEVCRAECSPATPAEGHHISTNFAVLELFIPWCWNSECSLLALCH", "length": 194, "header": "tr|A0A9J7G3Y7-1|A0A9J7G493_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G432-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7G432-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEPAVMNKTWCKAPHLLLSSEKVVSSEALDGVPILVLANKQDVEGLAFLKVQVNKQARWN", "length": 174, "header": "tr|A0A9J7G432-1|A0A9J7G432_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G493-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7G493-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEPAVMNKTWCKAPHLLLSSEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 220, "header": "tr|A0A9J7G493-1|A0A9J7G493_CRIGR Isoform 1 of ADP-ribosylation factor-related protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G7I4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7G7I4-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVEGLAFLKVQVNKQARWN", "length": 155, "header": "tr|A0A9J7G7I4-1|A0A9J7G493_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#A0A9J7JTW5-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEPAVMNKTWCKAPHLLLSSEKVVSSEALDGVPILVLANKQDVEQRSPRGHRMDGEVCRAECSPATPAEGHHISTNFAVLELFIPWCWNSECSLLALCH", "length": 213, "header": "tr|A0A9J7JTW5-1|A0A9J7JTW5_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} }, { "isoform_ac": "G3HGZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G493/entry#G3HGZ8-1", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 201, "header": "tr|G3HGZ8-1|A0A9J7G493_CRIGR Computationally mapped isoform of ADP-ribosylation factor-related protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arfrp1 PE=4 SV=1 CANONICAL=A0A9J7G493-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HGZ8", "url": "https://www.uniprot.org/uniprotkb/G3HGZ8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HGZ8", "url": "https://www.uniprot.org/uniprotkb/G3HGZ8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762329", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762329", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AP37-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "ARFRP1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLCESKCAFEKMVTSEALDGVPILVLANKQDIETCLSIPDIKTAFSDCISKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 201 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E1C1J0-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "ARFRP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYTLLSGLYKYMFQRDEYCILILGLDNAGKTTFLEQTKTRFNKNYKGMSLSKITTTVGLNIGTIDVGKTRLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLSESKRAFEKMITSEALEGVPILVLANKQDVETCLSIPDIKTAFSDCINKIGKRDCLTQACSALTGKGVNEGIEWMVKCVVRNIHRPPRKKDIT", "length": 201 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7FAS3-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "arfrp1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQTKTRFSKNYKGMNLSKITTTVGLNIGTIDVGKARLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLGESKNAFEKMISSEALEGVPLLVLANKQDVENCLSVPDIKTAFSDCAPKIGKRDCLVQPCAALSGQGVNDGIEWMVKCVIRNIHRPPRQKDIT", "length": 201 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q02804-1", "protein_name": "ADP-ribosylation factor-like protein 3", "gene_name": "ARL3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEHISARDSRVLPISALTGEGVKDAIEWMIVRLERNKKSRPPIYK", "length": 198 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q13795-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "ARFRP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 201 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q32LJ2-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "ARFRP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDIT", "length": 201 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54QU7-1", "protein_name": "ARF-like protein", "gene_name": "arfrp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYSLFVGLWKYLFSKNEYFILILGLDNSGKTTLLEQIKTKYTKIPGLPPHKIVPTVGLNIARTQFQDIKLIYWDLGGQTQLRTIWNKFFSDVHAIIYVVDSSDKERFNESKDELEIVINDSKLKDVPLLLFFNKQDLPDSETIEYLSSVFKSVIQSCQLSNSTDQLSSLSSSSPITTRNVQLQPLIACKGEGLEQGINWLSDCLRKNARTIEKSDF", "length": 216 }, "evidence": [ { "id": "A0A9J7G493", "url": "https://omabrowser.org/oma/group/A0A9J7G493/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q63055-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "Arfrp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831456" } ] }, { "annotation": "Involved in transcriptional regulation by repressing gene expression. Associates with the nucleosome remodeling and histone deacetylase (NuRD) complex, which promotes transcriptional repression by histone deacetylation and nucleosome remodeling. Sequence-specific DNA-binding protein that recognizes repetitive and non-consecutive TTC sequences in pericentric repeat and initiate heterochromatin formation through interaction with SUV39H1/2 methyltransferases which catalyze histone H3K9 methylation.", "evidence": [ { "database": "UniProtKB", "id": "G3HH06", "url": "https://www.uniprot.org/uniprotkb/G3HH06#function" }, { "database": "UniProtKB", "id": "ARBA00094431", "url": "https://www.uniprot.org/uniprotkb/ARBA00094431#function" }, { "database": "UniProtKB", "id": "A0A9J7G4B0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B0#function" }, { "database": "UniProtKB", "id": "A0A9J7G668", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668#function" }, { "database": "UniProtKB", "id": "A0A9J7JQT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQT4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G668", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf512b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668", "locus": {} } ], "crossref": [ { "id": "100764259", "url": "https://www.ncbi.nlm.nih.gov/gene/100764259", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764259", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764259", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G490", "url": "https://www.orthodb.org/?gene=A0A9J7G490", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G4B0", "url": "https://www.orthodb.org/?gene=A0A9J7G4B0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G668", "url": "https://www.orthodb.org/?gene=A0A9J7G668", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKJ9", "url": "https://www.orthodb.org/?gene=A0A9J7JKJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JTX0", "url": "https://www.orthodb.org/?gene=A0A9J7JTX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HH06", "url": "https://www.orthodb.org/?gene=G3HH06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22979:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22979:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016831456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G490", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G490-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G490-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4B0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G668", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G668-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HH06", "url": "https://www.uniprot.org/uniprotkb/G3HH06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HH06-1", "url": "https://www.uniprot.org/uniprotkb/G3HH06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKGDHLVGKYHCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 888, "header": "tr|A0A9J7G668-1|A0A9J7G668_CRIGR Isoform 1 of Zinc finger protein 512B OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G490-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7G490-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKNWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 855, "header": "tr|A0A9J7G490-1|A0A9J7G490_CRIGR Computationally mapped isoform of Zinc finger protein 512B isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7G4B0-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKGDHLVGKYHCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 885, "header": "tr|A0A9J7G4B0-1|A0A9J7G4B0_CRIGR Computationally mapped isoform of Zinc finger protein 512B OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G668-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7G668-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKGDHLVGKYHCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 888, "header": "tr|A0A9J7G668-1|A0A9J7G668_CRIGR Isoform 1 of Zinc finger protein 512B OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7JKJ9-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKQQDKGLDQMWVL", "length": 784, "header": "tr|A0A9J7JKJ9-1|A0A9J7JKJ9_CRIGR Computationally mapped isoform of Zinc finger protein 512B isoform X6 OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7JQT4-1", "sequence": { "sequence": "MSSFPYCKTHQSWFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKGDHLVGKYHCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 812, "header": "tr|A0A9J7JQT4-1|A0A9J7JQT4_CRIGR Computationally mapped isoform of Zinc finger protein 512B OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#A0A9J7JTX0-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGGCLAGPRTGLHGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARDRPHLIPLWQPCSCDLGHLLTPSVKGQ", "length": 744, "header": "tr|A0A9J7JTX0-1|A0A9J7JTX0_CRIGR Computationally mapped isoform of Zinc finger protein 512B isoform X7 OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} }, { "isoform_ac": "G3HH06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G668/entry#G3HH06-1", "sequence": { "sequence": "MTESFCVGGGRRLQGSNKSGSGKSGSRKDVQLPILQDPPKLGMPVVHSGHTVPSQASLCFDPGNPASDRTEGKKKGRPKAENQALRDIPFSLMNQWKDEFKAHSRVKCPNSGCWLEFPSIYGLKYHYQRCQGGAISDRLAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPTPKPGPVSRPVTINRPVGVSKPIGVSKPVTVGKPVGVSKPIGISKPVTVSRPMPVTKPVTVSRPMPVSRPVPVTKPIPITKPVPLTKHMPVTKLVTVTKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRHTPPCKMVLLTKSENKTPRATGKNSNKKRAADSLDTCPILPKQARPENGEYGPSTMGQSVTFQLGTDPSNSSLLPGSRPLMSKEALRPADPASQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPAPVAHPAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPTDKIPEAEDLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSVSGLKAHLASCSKGDHLVGKYHCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHKSQDSVMPRKEKKKSLSGGKKRGRKPKERSSEEPASKLPPNRDDWPPGGRDRGTRGSTGRKAGAGKAPEK", "length": 875, "header": "tr|G3HH06-1|A0A9J7G668_CRIGR Computationally mapped isoform of Zinc finger protein 512B OS=Cricetulus griseus OX=10029 GN=Znf512b PE=3 SV=1 CANONICAL=A0A9J7G668-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HH06", "url": "https://www.uniprot.org/uniprotkb/G3HH06" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271278" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tcaim", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8", "locus": {} } ], "crossref": [ { "id": "100765518", "url": "https://www.ncbi.nlm.nih.gov/gene/100765518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027986", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MGAWKLACIFRNVLPPEAFEEVGYHLHGSLSQRIIPVSDRFCLKKILPHWLHYSRALSGAEAINALRPFYFAVHPDFFGQHPREREINENSLKRLSVYLENLQKPGFKSLKPTQLTFYIREKTAQHSSEGQEPSSTSGFRAVRFTLHTSDLLSTVLYILNSCSLSAEHIQSLNTNVHSQPLKETTGMPGRPIKWHRSYYSFTGFKDPDEDLEQVSRVETTLMSWLGSNGKSAVKKLKNSLPLRKELDRLKSELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQSLEPLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSVLEDQISSLLGGIQVVYIEELQPEFTIDEYYSLLNVFYNQLLKSRVPSHPQGLSGLQMILSSDRYEPTLHELGHFNIPALSDPAGLQSFMRAKARQARENMTRREELKVIENELIQASTKKFSLEKLYKEPSISSRQMVDCCKRLLGQSLPYLHGMRLCVSHFYSVMQDGDLCIPWDWKKGEATK", "length": 527, "header": "tr|A0A9J7G1H8-1|A0A9J7G1H8_CRIGR Isoform 1 of T-cell activation inhibitor, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcaim PE=4 SV=1 CANONICAL=A0A9J7G1H8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8/entry#A0A9J7G0G2-1", "sequence": { "sequence": "MGAWKLACIFRNVLPPEAFEEVGYHLHGSLSQRIIPVSDRFCLKKILPHWLHYSRALSGAEAINALRPFYFAVHPDFFGQHPREREINENSLKRLSVYLENLQKPGFKSLKPTQLTFYIREKTAQHSSEGQEPSSTSGFRAVRFTLHTSDLLSTVLYILNSCSLSAEHIQSLNTNVHSQPLKETTGMPGRPIKWHRSYYSFTGFKDPDEDLEQVSRVETTLMSWLGSNGKSAVKKLKNSLPLRKELDRLKSELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQSLEPLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSVLEDQISSLLGGIQVVYIEELQPEFTIDEYYSLLNVFYNQLLKSRVPSHPQGLSGLQMILSSDRLKVIENELIQASTKKFSLEKLYKEPSISSRQMVDCCKRLLGQSLPYLHGMRLCVSHFYSVMQDGDLCIPWDWKKGEATK", "length": 485, "header": "tr|A0A9J7G0G2-1|A0A9J7G0G2_CRIGR Computationally mapped isoform of T-cell activation inhibitor, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Tcaim PE=4 SV=1 CANONICAL=A0A9J7G1H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8/entry#A0A9J7G1H8-1", "sequence": { "sequence": "MGAWKLACIFRNVLPPEAFEEVGYHLHGSLSQRIIPVSDRFCLKKILPHWLHYSRALSGAEAINALRPFYFAVHPDFFGQHPREREINENSLKRLSVYLENLQKPGFKSLKPTQLTFYIREKTAQHSSEGQEPSSTSGFRAVRFTLHTSDLLSTVLYILNSCSLSAEHIQSLNTNVHSQPLKETTGMPGRPIKWHRSYYSFTGFKDPDEDLEQVSRVETTLMSWLGSNGKSAVKKLKNSLPLRKELDRLKSELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQSLEPLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSVLEDQISSLLGGIQVVYIEELQPEFTIDEYYSLLNVFYNQLLKSRVPSHPQGLSGLQMILSSDRYEPTLHELGHFNIPALSDPAGLQSFMRAKARQARENMTRREELKVIENELIQASTKKFSLEKLYKEPSISSRQMVDCCKRLLGQSLPYLHGMRLCVSHFYSVMQDGDLCIPWDWKKGEATK", "length": 527, "header": "tr|A0A9J7G1H8-1|A0A9J7G1H8_CRIGR Isoform 1 of T-cell activation inhibitor, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcaim PE=4 SV=1 CANONICAL=A0A9J7G1H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8/entry#A0A9J7GWL1-1", "sequence": { "sequence": "MGAWKLACIFRNVLPPEAFEEVLPEEDPPSLASLLSSSIRSRSHQCLEAFLLCSSSGFLWTAPQGKGFRAVRFTLHTSDLLSTVLYILNSCSLSAEHIQSLNTNVHSQPLKETTGMPGRPIKWHRSYYSFTGFKDPDEDLEQVSRVETTLMSWLGSNGKSAVKKLKNSLPLRKELDRLKSELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQSLEPLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSVLEDQISSLLGGIQVVYIEELQPEFTIDEYYSLLNVFYNQLLKSRVPSHPQGLSGLQMILSSDRYEPTLHELGHFNIPALSDPAGLQSFMRAKARQARENMTRREELKVIENELIQASTKKFSLEKLYKEPSISSRQMVDCCKRLLGQSLPYLHGMRLCVSHFYSVMQDGDLCIPWDWKKGEATK", "length": 456, "header": "tr|A0A9J7GWL1-1|A0A9J7GWL1_CRIGR Computationally mapped isoform of T-cell activation inhibitor, mitochondrial isoform X4 OS=Cricetulus griseus OX=10029 GN=Tcaim PE=4 SV=1 CANONICAL=A0A9J7G1H8-1" }, "locus": {} }, { "isoform_ac": "G3H967-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8/entry#G3H967-1", "sequence": { "sequence": "MFCHLKPLRRFCLKKILPHWLHYSRALSGAEAINALRPFYFAVHPDFFGQHPREREINENSLKRLSVYLENLQKPGFKSLKPTQLTFYIREKTAQHSSEGQEPSSTSGFRAVRFTLHTSDLLSTVLYILNSCSLSAEHIQSLNTNVHSQPLKETTGMPGRPIKWHRSYYSFTGFKDPDEDLEQVSRVETTLMSWLGSNGKSAVKKLKNSLPLRKELDRLKSELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQSLEPLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSVLEDQISSLLGGIQVVYIEELQPEFTIDEYYSLLNVFYNQLLKSRVPSHPQGLSGLQMILSSDRYEPTLHELGHFNIPALSDPAGLQSFMRAKARQARENMTRREELKVIENELIQASTKKFSLEKLYKEPSISSRQMVDCCKRLLGQSLPYLHGMRLCVSHFYSVMQDGDLCIPWDWKKGEATK", "length": 497, "header": "tr|G3H967-1|A0A9J7G1H8_CRIGR Computationally mapped isoform of T-cell activation inhibitor, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcaim PE=4 SV=1 CANONICAL=A0A9J7G1H8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H967", "url": "https://www.uniprot.org/uniprotkb/G3H967" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H967", "url": "https://www.uniprot.org/uniprotkb/G3H967" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765518", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G1H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8" }, { "id": "PF14687", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14687" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4460", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 164, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G1H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H8" }, { "id": "PF14688", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14688" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4461", "eco_id": "ECO_0000259", "start_pos": 219, "end_pos": 521, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 442, "end_pos": 444 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXZ0-1", "uniprot_ac": "A0A9J7FXZ0", "uniprot_id": "A0A9J7FXZ0_CRIGR", "mass": { "chemical_mass": 33464.0, "monoisotopic_mass": 33464.0 }, "refseq": { "ac": "XP_007639625", "name": "vesicle-trafficking protein SEC22c isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639625" }, "gene_names": [ { "name": "Sec22c", "type": "recommended", "evidence": [ { "id": "A0A9J7FXZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0" } ] }, { "name": "Sec22c", "type": "synonym", "evidence": [ { "id": "XP_007639625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639625" } ] } ], "protein_names": [ { "name": "Vesicle-trafficking protein SEC22c isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FXZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0/entry#names_and_taxonomy" } ] }, { "name": "vesicle-trafficking protein SEC22c isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639625" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613803.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639625" } ] }, { "annotation": "May be involved in vesicle transport between the ER and the Golgi complex.", "evidence": [ { "database": "UniProtKB", "id": "G3H988", "url": "https://www.uniprot.org/uniprotkb/G3H988#function" }, { "database": "UniProtKB", "id": "ARBA00003595", "url": "https://www.uniprot.org/uniprotkb/ARBA00003595#function" }, { "database": "UniProtKB", "id": "A0A9J7FXZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sec22c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0", "locus": {} } ], "crossref": [ { "id": "cd14824", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14824", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772147", "url": "https://www.ncbi.nlm.nih.gov/gene/100772147", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010908", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010908", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043546", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043546", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772147", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772147", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDRTNDC", "url": "https://omabrowser.org/oma/group/QDRTNDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FXZ0", "url": "https://www.orthodb.org/?gene=A0A9J7FXZ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46258:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46258:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639625", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H988", "url": "https://www.uniprot.org/uniprotkb/G3H988", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H988-1", "url": "https://www.uniprot.org/uniprotkb/G3H988-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPMILFASVVRVRDGLPLSASTDFYHAQEFLECRRQLKALARRLPQYPGRGSAESRDFNIYFSSSGGVACMAICSRQCPAAMVFCFLETLWWDFTASYDTTCIGLASRPYAFLEFDSVIQKTKWRFNHMSSSQMKSGLEKIQEELELQPPAMLSIEGTDVANGMLNGHTPVHSEPAPNLRMEPVTALGVLSLVLNILCAALNLVRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQSSQDSEGGADSGLHLPGQHVPARAEEHLASPLSHRSGFSVLVSDPDQTAAGEAVRLWSVRTASRSERSL", "length": 306, "header": "tr|A0A9J7FXZ0-1|A0A9J7FXZ0_CRIGR Isoform 1 of Vesicle-trafficking protein SEC22c isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec22c PE=3 SV=1 CANONICAL=A0A9J7FXZ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0/entry#A0A9J7FXZ0-1", "sequence": { "sequence": "MPMILFASVVRVRDGLPLSASTDFYHAQEFLECRRQLKALARRLPQYPGRGSAESRDFNIYFSSSGGVACMAICSRQCPAAMVFCFLETLWWDFTASYDTTCIGLASRPYAFLEFDSVIQKTKWRFNHMSSSQMKSGLEKIQEELELQPPAMLSIEGTDVANGMLNGHTPVHSEPAPNLRMEPVTALGVLSLVLNILCAALNLVRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQSSQDSEGGADSGLHLPGQHVPARAEEHLASPLSHRSGFSVLVSDPDQTAAGEAVRLWSVRTASRSERSL", "length": 306, "header": "tr|A0A9J7FXZ0-1|A0A9J7FXZ0_CRIGR Isoform 1 of Vesicle-trafficking protein SEC22c isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec22c PE=3 SV=1 CANONICAL=A0A9J7FXZ0-1" }, "locus": {} }, { "isoform_ac": "G3H988-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ0/entry#G3H988-1", "sequence": { "sequence": "MPMILFASVVRVRDGLPLSASTDFYHAQEFLECRRQLKALARRLPQYPGRGSAESRDFNIYFSSSGGVACMAICSRQCPAAMVFCFLETLWWDFTASYDTTCIGLASRPYAFLEFDSVIQKTKWRFNHMSSSQMKSGLEKIQEELELQPPAMLSIEGTDVANGMLNGHTPVHSEPAPNLRMEPVTALGVLSLVLNILCAALNLVRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQCYLYLFYSPARTLKVVLTLAFISLGNMYLHGLRNTWQVLFHIGVASLSSYQILTRQLQERQSDYGV", "length": 303, "header": "tr|G3H988-1|A0A9J7FXZ0_CRIGR Computationally mapped isoform of Vesicle-trafficking protein SEC22c isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec22c PE=3 SV=1 CANONICAL=A0A9J7FXZ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H988", "url": "https://www.uniprot.org/uniprotkb/G3H988" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H988", "url": "https://www.uniprot.org/uniprotkb/G3H988" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772147", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772147", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AJP5-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "SEC22C", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSMILFACVVRVRDGLPLSASTDFYHTQDFLECRRRLKTLALRLAQYPGRGSAKGRDFSIHFSSSRDVACMAICSHQCPSAMAFYFLETLWWEFTASYDTTCIGLASRPYAFLEFDSVIQKVKWHFNYVSSTQMENSLEKIQEDLKFQPPVVLTLEDTDVANGVMNGHTRMHLEPAPNFRMEPVTALGVLSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSHQILTRQLQEKQSDCGV", "length": 303 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V1ABL7-1", "protein_name": "SEC22 homolog C, vesicle trafficking protein", "gene_name": "SEC22C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSMIFFACVVRVRDGLPLSASTDFHFNQDFLECRKKLKALSSVLARYPSRGTAKGRDLSIHFLSSGEIACMAICSSSYSTIMAFCFLEELQWAFAASYDTTSINLASRPYAFLEFDNAIQKVKHRFNYMSGSATKVSWEKVEEELRLQPPVQLKLEDAELMNGMANGGHAGVHVEVAPAYRMQRVTPLGILSLVLNIMCGALNLIRGVHLAEHSFQEDYEGIGNVVAFFLPFLACVFQCYLYLYYSSTRKVKTFVLFFSVCLCNIYLYGLRNLWQIAFHIGVASLSSYQILTRQLMEKQPDCGV", "length": 304 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QFN4-1", "protein_name": "Vesicle-trafficking protein SEC22c isoform X1", "gene_name": "sec22c", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSLILFAFVVRVRDGLPLSASTDFLHNKELQEKKQQIKIISKSLNVLPERGTVKGHELNIHFLSCEGVSYMSVCACTLPAATAFCFLEDLRWEFTACFDNSAVAMANRPYPFLEFDSAIQKLQQHYNQKGGPSLEVTLAEVQEDLRSSPPQVLTMEDVVLSNGAANGHVEQTTASGQSQRLEPVSAPGILSLVLNIMCAALNLIRGVHLIEYTFQDDYDGLWNVVAFLVAFLCCVCQCHLYLFHTCQKRLKSFTLLTLIVLCNAFLFGPRNIWQLVFHLSVACLSTLLTLHRKLQDRNTDCGV", "length": 303 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ2-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "SEC22C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLILFACVVRVRDGLPLSASTDFYHSQDFLECRRRLKTLALRLAQYPGRGSAEGCDFSIHFSSSRDVACMAICSLQCPAAMAFCFLETLWWEFTASYDTTCVGLASRPYAFLEFDNVIQKVKWHFNYVSSTQMDSSLGKIQEELKFQPPVVLTLEDTDVANGVMNGHTLMHLEPAPSFRMEPVTALGILSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNVYLHGLRNLWQILFHIGVAFLSSHQILTRQLQDKQSDCGV", "length": 303 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BXT9-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "Sec22c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMILFASIVRVRDGLPLSASTDFYYAQEFLECRRQLKTLAQRLARHPGRGCAESCDFLIYFSSSGDVACMAICSRQCPAAMAFCFLEALWWDFIASYDTTCVGLASRPYAFLEFDSVIQKTKWHFNHMSSSQMKSGLEKIQEELEFQPPAVLSLEDTDVANGMLNGHTPVHSEPAPNLRMKPVTALGVLSLVLNIMCAALNLIRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQCYLYLFYSPARTLKVLLMLASICLGNAYLHGLRNTWQILFHVGVAFLSSYQILTRQLQERQSDYGV", "length": 303 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRL7-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "SEC22C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNFRMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQLQEKQSDCGV", "length": 303 }, "evidence": [ { "id": "A0A9J7FXZ0", "url": "https://omabrowser.org/oma/group/A0A9J7FXZ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275136" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rexo1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5B7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5B7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06145", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06145", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"length": 1203, "header": "tr|G3HF93-1|A0A9J7G5B7_CRIGR Computationally mapped isoform of RNA exonuclease 1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Rexo1 PE=3 SV=1 CANONICAL=A0A9J7G5B7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HF93", "url": "https://www.uniprot.org/uniprotkb/G3HF93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HF93", "url": "https://www.uniprot.org/uniprotkb/G3HF93" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768918", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768918", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AIJ8-1", "protein_name": "RNA exonuclease 1 homolog", "gene_name": "REXO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRVKEGGTWGGKPCPNDRHSPEVLCQHTVSVVSLKPVPECQADSESLEYSMNKYLQYLLTTGSSERGYDPYNPELPKPSLEAEDGALADLTDMTPGILELELVNKAIEAVKNEVEREQKKYEELLETTKELRASDSSLISETPVSAAVTQSDLFTSLEYNPGSYNFSNNSDYNPTPFAAGQSSKYTLDSLRSKGNSLEYVPKAVAQSKKYSSTVTNNKYVIDDSKPSTDLEYDPLSNYSARLLSKATTKELKGSKRGRAPSYEDPYSPSRKKLCEVPDEYEVCARFSSSEDEADAEYKSTSVSSPSKAGSESESEDGLSNKERSAASGDFSSQGSKETAAKYGMEDLPSSQKIPPKTALEKNAKAAKSYSGKNDQETENKNKESKDKTKRKKSDVSKTPGLSEVSKKEKSKNAEKDKVGKKEEKVKTKNEEKNCKDKSVKVKTDGNLKKADKHKSERVDELKKEKSKGSSISSGKSKSEDVTKGSSTEKLGGSKKESKLKTGDVKNGKETSSSKNKDKGTKTSTVEQKKEKVNPAGKGDPKKGQKQQSLSHVDLFGDESGDEDDKGKPMPSTLPDVSSDSDGDSSGSDSQSENGKTKRAKRSKLSKSSSSSSMSDDIDYSILEKDLDFETDPMEECLRIFNESTDVKTEDKGRLGKQPSKEEVNKEKTEENLTTLFPGQKRRISHLVKQGNAEVPNRPVVRPYRPPTAQEVCYQRIQLAQQQAAQLAVAVQKASLSLPGEKRRIAHVPNVALTAAVKQSLVSGKKTAAGKSVTPANDSEAPTLSLKACTLAGMASKTTSTTVQKRIAHVPSLQSASLQRPVIPTEFGAKVPTNIRQRYLNLFIDECLKFCSSSQEAFDKALAEEKVAYERSTSRNIYLNVAVNTLKKLRSLVPNSPSSTNKTSNKKVVSHEAVLGGKLAAKTSFTLNRSGSLKAEDLTGAALYRRLKEYLMTEEQLKENGYPMPHPEKPGRAVLFTAEEKKSTDSSCRICCRCGTEYMVSASGSCIRKEECVHHWGRLRKQRVPGGWETHYSCCSGAVGSAGCQVAKQHVHDGRKESLDGFVKTFEKLPTTDGYPGIFALDCEMCYTKQGLELTRVTVINSDLKVVYDTFVKPDTKVVDYNTRFSGVTEEDLENTSITLRDVQAVLLNMFSADTILIGHSLESDLFALKLIHGTVVDTAIVFPHRLGLPYKRALRTLMADYLKRIIQDNVEGHDSSEDARACMELMIWKIKEDSKVKR", "length": 1238 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B0S6F3-1", "protein_name": "RNA exonuclease 1 homolog", "gene_name": "rexo1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRSTGFFRGIDCPFYCQNNNGKSGADGCSRPYCHFRHSRQRRGSSGIYDIKKTKALSSNQNDQEYDPFSPEVVRPREQYNGEPPSTGQDVDLGTAELELVNRAIEAVRSELERDKKKLSQIGDQEYEPTTSSVKRHKPPVPSHEGYDPGSYQMDQASEYTPSPHSSKYTLDTENTNANALEYVPTAVSKSNIKKLTPRPPSHAKCKYTLDTSKPTTDMEYDPLSNYSAKPTIKEQKTLALAGQRRKRLYSEKQGEAEEYVPTVKKPKSSFTKADVPKYTASFSESDEESSGTEYRPVNVSRLKHNRINIGLPKSSAMGQQKKQISKTDAYFSPCESDDTESQDVNRTNKKTDKKVSASQTKTNKTDKVKKENKDSNKKSQKEQQDSSSVDKTSKSSSKKDNSQSKNIEGSSKSKEKSHKDKSASKSAEEKDKKVVKIKTESSHKEKNKSSDGIKKPKMDKPVKTDKVLSKIKDQKNGKLESGSKEKDKKKSSSSNTKDKSKKSISVLDHKEAKKTKQRNLSHVDLFGADSAEEEDEEDERIVRKSASAFKRGGLVNNKRKSSSSSEDDSEVDEDDGGVDTEDFSCLQDVMEYDSDPMEECLRIFNESKEVKMEDKGRQAKQPSRETEEEDEETESTLTTLFPGQKKRVSHFKAQGKSETTMNSVPMQQRRMTAQEICYQRMQKAQQQAAQLAEAVKTASASASSNPVLGISGEKRRVAHRPNASLPSSKPADASSRVLSPTRVVTDQLSVKAQTSAGILSKTISTTVQKRVAHTPTLKSSTMKRPVIPTEFGAKVPTIVRQRYLNIFIDECLKFCSSEQDAFQLALEEEKVVYDRSSSKNIYLNVAVNTVKKLRSRSTPASPVTKSPAVSVNKKAQSHEEVLGGRLAATTSFTINRSGKQHDVNPKGAILYKKLRKYAMTEEQLQEHGYPLPHPEISGHAVVHNLPEKKNNDPFSKICCRCGAEYKVNSNGSCVRKEECSHHWGRLRRNRVPGGWETLYNCCSGAVGSPGCEVCKQHVQDGRKESLDGFVKTFSKPLPVDGNAGVYALDCEMCYTKQGLELTRVTVINSELKVVYDTFVKPGSRVVDYNTRFSGVTADDLENTTISLRDVQAVLLSMFSADSILIGHSLESDLFALKLIHSMVVDTAIVFPHRLGLPYKRALRNLMADYLKRIIQDNVGGHDSSEDARACMELMIWKIKEDAKVKR", "length": 1207 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZCX6-1", "protein_name": "RNA exonuclease 1 homolog", "gene_name": "Rexo1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRSTGFFRSIDCPYWAGAPGGPCRRPYCHFRHRGARGPGAPGSGGVTSPAAGLGYDPYNPELPQPPVQRENGALGQGDGMLELELVNQAIEAVRGEVELEQRRYQELLETARGHGAGASALAPCSPATSMDDDDTFSLALTYTPGGLLSPDAAYQPTPLAVPAEPGHKYSLAPSDRGQSRAAGGAGALEYVPKAVGQPRRGGKYVVDSSKPSTDLEYDPLSNYSARHLGRTSTRDERATKRPRGSRGTEPYTPALKKPCDPSGGCEARFSDSEDDVSSPPKADDPESKAPGKPVSKEGIEPEEGSLRVTKEMAVQYDVEDLGQPPKAPDTVSVVKPSSPARASQDAGVPKEGKAKKKKSGTPASLSHKDKVRKKDKKKEKDPARPRGKEKVCADRKKLSSSSPRGKAQGLEGTKKKPSSATTVASSGKGGTGHPSSTGPQDRGPNSRAPLAWKGGCAKKMPSVKLAERKTRSLDEGAPQDTPKLKKRALSHAELFGDESEEEDSGLGTAPRVWPPTLPSLSSDSESDSDSSLGLGETKVPKRLKAAPPASPAPPSPLSSSSSSGASQCAEEGVGYSALEKELDLDVDPMEECLRIFNESTSVKTEDKGRLARQPPKEKAEEETHAGLTTLFPGQKRRVSHLSKPGKEAEAPKRTPVAPPARPPTAQEVCYRRAQQAQRDSASWLQAVPRPTERLSSVHISAPGEKRRIAHVPNPRLAAPPTGAKRALPASGSQVSHGPEPGSQPLKTRTLSGMASKTTTTVTPKRMAHSPSLQSLKKPVIPKEFGGKVPTVVRQRYLNLFIEECLKFCSSNQEAIEKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLVPNAVPNLSKASSRRVVSHEVVLGGKLAAKTSFSLSRPSSPRVEELKGTALYSRLREYLLTPEQLKENGYPFPHPERPGGAVIFTAEEKKPKDPSCRICCRCGTEYLVSSSGRCVRNEECYYHWGRLRRNRVAGGWETQYMCCSAAVGSVGCQVAKQHVQDGRKENLEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNAVVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTKR", "length": 1197 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2PDP6-1", "protein_name": "Exonuclease domain-containing protein", "gene_name": "Dmel\\CG12877", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLPSTGLFKGFLCPYFDGQDAASCKRPFCHFKHARKDELEAAPPAEPSPVPKYKPAPKLLSLPLPQITLCAPRKKSNLEYHPEKPALDASPAKKKQEASVDSAPKYVPGQPSVTNGEEYDDWQAVLEKEIDEQMQVEIEEQVQNNDEEQKIDTVAENEEDQENTQLTDARDSHEKDRKPSKERERDIEKKKIRELKREKIKDRDRDRDRDREKDKEKSKERDREKEKNDRDKRKSSHSDKERSKERNTSSSSSSKHKSSSSSSSSKKSSSSDKHRDDKSSSSRHKSSSSSSSSKSHHHKSSSSSSRSKTKRSSSSSKSAGTSKSEPEADKDTEAAVLTPAEPMDDLDDMDFDFEADTSEGEIVRQCEMIFDEMEKKFAQMHKDEGGNANPESSRKRKAPSPDIDTFTEAATAALQKRRVAHENADKITPHLAPSAAMRKPNHVRNAMQAIFNRRAELRRQEKLQAEASAEQVRQAQERVRQAQEELRQAKVNSNLTPLISRSALTPPVRSARSIAPVANIVAIARAKKKIEELQAEKKPAFTPAQSFKGAGRVAHKPTAALDKAAPVSNAEKPTVLDPSSSKISYNVRIQYYEMMVRHCTVIYPQLADAWERAQVEELTVFKKCNTPAIYKNSCMLAINKLRKEALEAGNKPSVACKTVSHEMMLGGKRALTTSWSVEKKGKLSSLGNGEPFDALDAEKAYKMVFDLRLTEEQLVENGYPRPGDKRGSAVIRACRPNRRPNQKERYCSRCGKVFSLDIYEHQSFDMCNYHPKSTGYRRGFTDHQHRCCQQPAGTPGCTYANYHVSDYYDPEKLTCFVKTIERGEEFVPTKKDIYALDCEMCYTTHGIELTRVTVVDINGRSVYDALVKPDNQIVDYNTTYSGITEAMLSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLIHDVVVDTSVLFPHKMGPPKKRALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLRNKIS", "length": 991 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7TT28-1", "protein_name": "RNA exonuclease 1 homolog", "gene_name": "Rexo1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRSTGFFRSIDCPYWAGAPGGPCRRPYCHFRHRGARGPGAPGSGGAASPASGLGYDPYNPELPQPPVQRENGALGQGDGMLELELVNQAIEAVRGEVELEQRRYQELLETARGHSAGPSALAPCSPATSIDDDDTFSLALTYTPGGLLSPDAAYQPTPLAVPAEPGHKYSLAPSDRSQGRAAGGAGALEYVPKAVGQPRRCGRPVSGGKYVVDSSKPSTDLEYDPLSNYSARHLGRASARDERATKRPRGSRGAEPYTPALKKPCDPFGGCEARFSDSEDDVTSPPKADVSSPKAGADPESKAPGKPVSKEGREHEDGGLRGTKEMAVQYDVEDLGQPPKAPDTVSVVKPGSPARASQDARVPKEGKAKKKKSGTSASLSHKDKVRKKDKKKEKDPARPRGKEKVCTDKKKLPASNPRGKAQGPEGTKKKPSSATTVASSGKGGSGRPSSTGPQDSGPGPHAPLAWKAGSAKKMSSGKLVERKARSLDEGAPQDTPKLKKRALSHAELFGDESEEEDSSLGAGAPRVWPPTLPSLSSDSESDSDSSLGLDETKVPKRLKAAPPASPVPPSPLSSSSSSSGASQCAEEDVDYSALEKEVDFDVDPMEECLRIFNESTSVKTEDKGRLARQPPKEKAEEKTHAGLTTLFPGQKRRVSHLCKPGKESEAPKRTPVAPPARPPTAQEVCYRRAQLAQRDSASWLQAAPRPTERLSSVHISAPGEKRRIAHVPNPRLAAAPTGAKRALSASSSQASHGPEPGSQPLKTRTLSGMASKTTTTVTPKRIAHSPSLQSLKKPVIPKEFGGKVPTVVRQRYLNLFIEECLKFCSSNQEAIEKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLVPNTVPNLSKASGRRVVSHEVVLGGKLAAKTSFSLSRPSSPRVEELKGTALYSRLREYLLTQEQLKENGYPFPHPERPGGAIIFTAEEKKPKDPSCRICCRCGTEYLVSSSGRCVRSEECYYHWGRLRRNRVAGGWETQYMCCSAAVGSVGCQVAKQHVQDGRKENLEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTKR", "length": 1213 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N1G1-1", "protein_name": "RNA exonuclease 1 homolog", "gene_name": "REXO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"length": 1221 }, "evidence": [ { "id": "A0A9J7G5B7", "url": "https://omabrowser.org/oma/group/A0A9J7G5B7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" } ], "pmid": "" }, { "name": "exonuclease activity", "id": "GO:0004527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004527", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G5B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5B7" }, { "id": "SM00479", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00479" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Exonuclease", "eco_id": "ECO_0000259", "start_pos": 1083, "end_pos": 1242, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 223, "end_pos": 225 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 604, "end_pos": 606 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G0E9-1", "uniprot_ac": "A0A9J7G0E9", "uniprot_id": "A0A9J7G0E9_CRIGR", "mass": { "chemical_mass": 82971.0, "monoisotopic_mass": 82971.0 }, "refseq": { "ac": "XP_016832045", "name": "NCK-interacting protein with SH3 domain isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832045" }, "gene_names": [ { "name": "Nckipsd", "type": "recommended", "evidence": [ { "id": "A0A9J7G0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ] }, { "name": "Nckipsd", "type": "synonym", "evidence": [ { "id": "XP_016832045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832045" } ] } ], "protein_names": [ { "name": "NCK-interacting protein with SH3 domain isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016832045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832045" }, { "id": "A0A9J7G0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614047.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016832045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832045" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nckipsd", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G0E9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G0E9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11849", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11849", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760109", "url": "https://www.ncbi.nlm.nih.gov/gene/100760109", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018556", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018556", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760109", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760109", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CFARIFC", "url": "https://omabrowser.org/oma/group/CFARIFC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FXD3", "url": "https://www.orthodb.org/?gene=A0A9J7FXD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FZ90", "url": "https://www.orthodb.org/?gene=A0A9J7FZ90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G0E9", "url": "https://www.orthodb.org/?gene=A0A9J7G0E9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQQ1", "url": "https://www.orthodb.org/?gene=A0A9J7JQQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HKN8", "url": "https://www.orthodb.org/?gene=G3HKN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13357", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13357", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13357:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13357:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016832045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832045", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HKN8", "url": "https://www.uniprot.org/uniprotkb/G3HKN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HKN8-1", "url": "https://www.uniprot.org/uniprotkb/G3HKN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDFADSCIHLTPSEKLLRLPLELSMVAYAHSLSIWKGCHDFQASFSGTKAHLKKPATQPTKKTRKLHSGVCSALLCSSCVAWRALCAGQNHSSNPHLLHGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGGRCVDLRRLRYAGDDKQLDILAGHSRTDLCEMYETGLLFEVMGVIETVRSQGF", "length": 763, "header": "tr|A0A9J7G0E9-1|A0A9J7G0E9_CRIGR Isoform 1 of NCK-interacting protein with SH3 domain isoform X1 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7FX46-1", "sequence": { "sequence": "MEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGGRCVDLRRLRYAGDDKQLDILAGHSRTDLCEMYETGLLFEVMGVIETVRSQGF", "length": 662, "header": "tr|A0A9J7FX46-1|A0A9J7FX46_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X7 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7FXD3-1", "sequence": { "sequence": "MYRALYAFRSAEPNAMAFAAGETFLVLERSSTHWWLAARARSGETGYVPPAYLHRLQGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGGRCVDLRRLRYAGDDKQLDILAGHSRTDLCEMYETGLLFEVMGVIETVRSQGF", "length": 720, "header": "tr|A0A9J7FXD3-1|A0A9J7FXD3_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X5 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7FZ90-1", "sequence": { "sequence": "MEDFADSCIHLTPSEKLLRLPLELSMVAYAHSLSIWKGCHDFQASFSGTKAHLKKPATQPTKKTRKLHSGVCSALLCSSCVAWRALCAGQNHSSNPHLLHGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGAAHGVPLPDACCGSLHVLPAAPPSAVRPAGHTEAHPG", "length": 747, "header": "tr|A0A9J7FZ90-1|A0A9J7FZ90_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X3 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7FZB1-1", "sequence": { "sequence": "MVAYAHSLSIWKGCHDFQASFSGTKAHLKKPATQPTKKTRKLHSGVCSALLCSSCVAWRALCAGQNHSSNPHLLHGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGGRCVDLRRLRYAGDDKQLDILAGHSRTDLCEMYETGLLFEVMGVIETVRSQGF", "length": 738, "header": "tr|A0A9J7FZB1-1|A0A9J7FZB1_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X4 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7G0E9-1", "sequence": { "sequence": "MEDFADSCIHLTPSEKLLRLPLELSMVAYAHSLSIWKGCHDFQASFSGTKAHLKKPATQPTKKTRKLHSGVCSALLCSSCVAWRALCAGQNHSSNPHLLHGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKSKDHGKPFTLGMLGQEDEFGGRCVDLRRLRYAGDDKQLDILAGHSRTDLCEMYETGLLFEVMGVIETVRSQGF", "length": 763, "header": "tr|A0A9J7G0E9-1|A0A9J7G0E9_CRIGR Isoform 1 of NCK-interacting protein with SH3 domain isoform X1 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#A0A9J7JQQ1-1", "sequence": { "sequence": "MEDFADSCIHLTPSEKLLRLPLELSMVAYAHSLSIWKGCHDFQASFSGTKAHLKKPATQPTKKTRKLHSGVCSALLCSSCVAWRALCAGQNHSSNPHLLHGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKLRMEYLSLMHAVVRSTSYLQHRHRLSDLQATLRRILAEEEASPQCQMDRMIVQEMYKEFPELGEVPS", "length": 757, "header": "tr|A0A9J7JQQ1-1|A0A9J7JQQ1_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X2 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} }, { "isoform_ac": "G3HKN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9/entry#G3HKN8-1", "sequence": { "sequence": "MYRALYAFRSAEPNAMAFAAGETFLVLERSSTHWWLAARARSGETGYVPPAYLHRLQGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSASVMTPSTSDHHLDSAVSRQPNGLCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTTIPSGGSSVSSGSSVSSTSMDTLCTGSGPSDLGPSSSPTPPPVPRRAAHTAVSQAQPSPSKAPSPEPPAEEVAADTNSASDALEALDALSLETTEEKPAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPSSSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPGVCKKMCRRDEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLSVVEDGLPLDTTEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATASIFYHTDMMALIDITVRQIADLSPGDKLRMEYLSLMHAVVRSTSYLQHRHRLSDLQATLRRILAEEEASPQCQMDRMIVQEMYKEFPELGEVPS", "length": 714, "header": "tr|G3HKN8-1|A0A9J7G0E9_CRIGR Computationally mapped isoform of NCK-interacting protein with SH3 domain isoform X1 OS=Cricetulus griseus OX=10029 GN=Nckipsd PE=4 SV=1 CANONICAL=A0A9J7G0E9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 217, "start_aa": "Thr", "end_pos": 217, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr217", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 278, "start_aa": "Thr", "end_pos": 278, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr278", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKN8", "url": "https://www.uniprot.org/uniprotkb/G3HKN8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKN8", "url": "https://www.uniprot.org/uniprotkb/G3HKN8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760109", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760109", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C7M3-1", "protein_name": "NCK interacting protein with SH3 domain", "gene_name": "NCKIPSD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYRALYSFRSAEPNSLPFAAGETFLLLERSNQHWWLVTRAGSGETGYAPASYLQRLQVLEQDVVLQSIDRAIEAVHNAAMKNGGKYNLEQRDVLQKLIHHRKETVSRKSHSPSPQGMVMTQSSSDHHLDAARQPNGVCRTGYERHHSLPNTEFEEEDEGPYQIPPQPRRAAPITPPPPEKRKSAQMAAPLKNAVEIIPGSASSASSVSTTSLDTLYTPSSASDAALPTAASSPATTPPPVPSRSVHTTITRNLDTGPAAHSRYTSSPKDGASKSPQAKRAAPAPPSDVGTPRSHAADGEKTLQGKKAAPAAPANLEAFSNLCLDDKKAAVAEPMPPEPSGLVASVPKTIGAELIELVRRNTHLSYELSRVAIGVVIGHIQTLVPATSGIMEQILISVVESKDLSSGLPSGQICHDEQRLEVIFADLARHKDDAQQRSWALYEDENVICCYLEELLRILTDADPEVCKKMCKKNEFESILSLVAYYQMEHRVPLRLLLLKCFGAMCNLDAAIISTLVNSVLPMELARDMQTHTQDHQKMCYSALVLAMIFSMGEPLPYHHYEHLNSQFVQFLLDVIEDGLPSDTTDQLPDLFINVLLAFNLHIPVPEHSVIMTTISKHSNVKTFTEKLLLLLNRGDDPVCIFKHQPQPPHSVLKFLQDIFASKDTASIFYHTDMMVLIDILVRQIADLSPGDKLRMEYLSLMHAIIRSTPYLQHQHRLSDLQGILQRILGEEEEEQQCQMDKLIILEIYKEFPEISPGTS", "length": 759 }, "evidence": [ { "id": "A0A9J7G0E9", "url": "https://omabrowser.org/oma/group/A0A9J7G0E9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9NZQ3-1", "protein_name": "NCK-interacting protein with SH3 domain", "gene_name": "NCKIPSD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSSTSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPLPSSQIPPQPRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEKAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSLVEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTTEQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEAPS", "length": 722 }, "evidence": [ { "id": "A0A9J7G0E9", "url": "https://omabrowser.org/oma/group/A0A9J7G0E9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W3K6-1", "protein_name": "SH3 domain-containing protein", "gene_name": "Dmel\\CG2258", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLKALYDFQAVYPKTISFDEGEYFILYQTSARQRNWWQVVSMKGNIGFVPSNYVMKIKVEHDFLISFLNSSIESLEKCTDHEINGIMSKDELLDRLREKKHTMERLYAESSERDGDSSLSYSHSYSDKGSHRHSHPHPTQSQTQLHSQHRQHSPPPSGGSVGSQRLDMSKKSMSSPAVGSSCGLPQNQGMIESPSMGSMQFQGSSCTIQTPQQQQPLPAPPAPAPSPSAASATPTAASTSKAATGGDVAQDNSITSEPSETTTTTTTTSEDVVTTYKETSQMSTSQQHKPQNGSTASASISASASASALRSNGGNGKANGSATALHQELQQEEADSAPDKSDDASAVQSDDGCPANGDSADNSQALDSIDSPSHRQRGLSLGRIEEGATGGGQLKVESSDVYQIVDALRRNTNLSFDLSCEALRVVLTSLEQLYNGAINPYLEAVAVHVTGKVATPKELLGITHDAKRLQYLFAQLADCKNDTEQRTWMLYEDEEDIIQFLEELVEILINADESISCYEMSCDQYQMFINLVQYYQMETRWSIKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMKTHFSNLDRFKQLVKMLTIIFSLGQPMPVNHQDYLGVHFASFLLEIVEGNNPEVLVDMVIALILAFNQQFSEHTYNVIIEGMQNLPSAKVFTEKLLLLLNREDDPTRLLKHPNEHMNTVLRMFIDIFSHPDTAGMFYTNDIKVLIDIVVRQLSDLDAGSTTRPCYLELCRRILRNTNYQEHQHRKHDLMKIFTRIFCEETECSASDQQLVREIANEFPQLFKA", "length": 801 }, "evidence": [ { "id": "A0A9J7G0E9", "url": "https://omabrowser.org/oma/group/A0A9J7G0E9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "pmid": "" }, { "name": "COP9 signalosome", "id": "GO:0008180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008180", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "pmid": "" }, { "name": "positive regulation of neuron projection development", "id": "GO:0010976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010976", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "Arp2/3 complex binding", "id": "GO:0071933", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071933", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E9" }, { "id": "PF09431", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09431" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPIN90/Ldb17 leucine-rich", "eco_id": "ECO_0000259", "start_pos": 583, "end_pos": 690, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 217, 278 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G4N5-1", "uniprot_ac": "A0A9J7G4N5", "uniprot_id": "A0A9J7G4N5_CRIGR", "mass": { "chemical_mass": 72711.0, "monoisotopic_mass": 72711.0 }, "refseq": { "ac": "XP_007645714", "name": "zinc finger protein 883 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645714" }, "gene_names": [ { "name": "LOC100750500", "type": "recommended", "evidence": [ { "id": "A0A9J7G4N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ] }, { "name": "LOC100750500", "type": "synonym", "evidence": [ { "id": "XP_007645714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645714" } ] } ], "protein_names": [ { "name": "Zinc finger protein 883 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G4N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 883 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645714" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614316.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645714" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "G3HUG3", "url": "https://www.uniprot.org/uniprotkb/G3HUG3#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5#function" }, { "database": "UniProtKB", "id": "A0A9J7JNS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNS6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750500", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4N5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4N5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750500", "url": "https://www.ncbi.nlm.nih.gov/gene/100750500", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750500", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G4N5", "url": "https://www.orthodb.org/?gene=A0A9J7G4N5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HUG3", "url": "https://www.orthodb.org/?gene=G3HUG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645714", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HUG3", "url": "https://www.uniprot.org/uniprotkb/G3HUG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HUG3-1", "url": "https://www.uniprot.org/uniprotkb/G3HUG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKHKKKMLERTTRISGKSEEPVTFEDVAVNFTSGEWTLLDSNQKKLYRDVMKETFMNLLSIEKTQEENNEEDHQNLRRNLGTQVVEKDSEYEHENWCEETQQQIPVHIVNEDMPPAITLYESSLCVRNVIDNLPSDVHLSDQTKEKLLECKEPVEKAFKHEKFWQEVGHSGSFQVHESSRDKSYENQCTPACGSLHYDQHQERAYTGNNHNENAFTNCTNGQVDERIYTEVKPFVCKQCGEAFVNSSHLISHERIHIVEKCYICKQCGKTFRYLSCFQKHERIHSGEPYACEQCGKAFIQLKNLLMHQRIHTGENSYECKHCEKVFTISNADHVHEKLHCVEKPYSCKHCGKAFTSPDDYNSCERIHTGENPFVCKKCGKAFKRLGHFMNHERIHTGEKPYACKHCGKSFTSSSDRNSHERIHTGEKPFVCKTCGKAFSRSDYLISHRRIHTGEKPYACKYCGKPFATSSDRNSHERIHTGKRSFLCKKCGKVFILSGDLIKHERIHTGEKPYACKHCGKAFTTSSARNSHERIHTGEKPYTCKHCTKTFATSSTRNSHEKTHTAEKHFACNPCGKTFNSQSSYYTHKKIHSMKEKLYICKHCGKEFTYCGNFLKHERIHAIESLSM", "length": 628, "header": "tr|A0A9J7G4N5-1|A0A9J7G4N5_CRIGR Isoform 1 of Zinc finger protein 883 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100750500 PE=3 SV=1 CANONICAL=A0A9J7G4N5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5/entry#A0A9J7G4N5-1", "sequence": { "sequence": "MRKHKKKMLERTTRISGKSEEPVTFEDVAVNFTSGEWTLLDSNQKKLYRDVMKETFMNLLSIEKTQEENNEEDHQNLRRNLGTQVVEKDSEYEHENWCEETQQQIPVHIVNEDMPPAITLYESSLCVRNVIDNLPSDVHLSDQTKEKLLECKEPVEKAFKHEKFWQEVGHSGSFQVHESSRDKSYENQCTPACGSLHYDQHQERAYTGNNHNENAFTNCTNGQVDERIYTEVKPFVCKQCGEAFVNSSHLISHERIHIVEKCYICKQCGKTFRYLSCFQKHERIHSGEPYACEQCGKAFIQLKNLLMHQRIHTGENSYECKHCEKVFTISNADHVHEKLHCVEKPYSCKHCGKAFTSPDDYNSCERIHTGENPFVCKKCGKAFKRLGHFMNHERIHTGEKPYACKHCGKSFTSSSDRNSHERIHTGEKPFVCKTCGKAFSRSDYLISHRRIHTGEKPYACKYCGKPFATSSDRNSHERIHTGKRSFLCKKCGKVFILSGDLIKHERIHTGEKPYACKHCGKAFTTSSARNSHERIHTGEKPYTCKHCTKTFATSSTRNSHEKTHTAEKHFACNPCGKTFNSQSSYYTHKKIHSMKEKLYICKHCGKEFTYCGNFLKHERIHAIESLSM", "length": 628, "header": "tr|A0A9J7G4N5-1|A0A9J7G4N5_CRIGR Isoform 1 of Zinc finger protein 883 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100750500 PE=3 SV=1 CANONICAL=A0A9J7G4N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5/entry#A0A9J7JNS6-1", "sequence": { "sequence": "MKETFMNLLSIEKTQEENNEEDHQNLRRNLGTQVVEKDSEYEHENWCEETQQQIPVHIVNEDMPPAITLYESSLCVRNVIDNLPSDVHLSDQTKEKLLECKEPVEKAFKHEKFWQEVGHSGSFQVHESSRDKSYENQCTPACGSLHYDQHQERAYTGNNHNENAFTNCTNGQVDERIYTEVKPFVCKQCGEAFVNSSHLISHERIHIVEKCYICKQCGKTFRYLSCFQKHERIHSGEPYACEQCGKAFIQLKNLLMHQRIHTGENSYECKHCEKVFTISNADHVHEKLHCVEKPYSCKHCGKAFTSPDDYNSCERIHTGENPFVCKKCGKAFKRLGHFMNHERIHTGEKPYACKHCGKSFTSSSDRNSHERIHTGEKPFVCKTCGKAFSRSDYLISHRRIHTGEKPYACKYCGKPFATSSDRNSHERIHTGKRSFLCKKCGKVFILSGDLIKHERIHTGEKPYACKHCGKAFTTSSARNSHERIHTGEKPYTCKHCTKTFATSSTRNSHEKTHTAEKHFACNPCGKTFNSQSSYYTHKKIHSMKEKLYICKHCGKEFTYCGNFLKHERIHAIESLSM", "length": 577, "header": "tr|A0A9J7JNS6-1|A0A9J7JNS6_CRIGR Computationally mapped isoform of Zinc finger protein 883 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100750500 PE=3 SV=1 CANONICAL=A0A9J7G4N5-1" }, "locus": {} }, { "isoform_ac": "G3HUG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5/entry#G3HUG3-1", "sequence": { "sequence": "MEPVTFEDVAVNFTSGEWTLLDSNQKKLYRDVMKETFMNLLSIEKTQEENNEEDHQNLRRNLGTQVVEKDSEYEHENWCEETQQQIPVHIVNEDMPPAITLYESSLCVRNVIDNLPSDVHLSDQTKEKLLECKEPVEKAFKHEKFWQEVGHSGSFQVHESSRDKSYENQCTPACGSLHYDQHQERAYTGNNHNENAFTNCTNGQVDERIYTEVKPFVCKQCGEAFVNSSHLISHERIHIVEKCYICKQCGKTFRYLSCFQKHERIHSGEPYACEQCGKAFIQLKNLLMHQRIHTGENSYECKHCEKVFTISNADHVHEKLHCVEKPYSCKHCGKAFTSPDDYNSCERIHTGENPFVCKKCGKAFKRLGHFMNHERIHTGEKPYACKHCGKSFTSSSDRNSHERIHTGEKPFVCKTCGKAFSRSDYLISHRRIHTGEKPYACKYCGKPFATSSDRNSHERIHTGKRSFLCKKCGKVFILSGDLIKHERIHTGEKPYACKHCGKAFTTSSARNSHERIHTGEKPYTCKHCTKTFATSSTRNSHEKTHTAEKHFACNPCGKTFNSQSSYYTHKKIHSMKEKLYICKHCGKEFTYCGNFLKHERIHAIESLSM", "length": 609, "header": "tr|G3HUG3-1|A0A9J7G4N5_CRIGR Computationally mapped isoform of Zinc finger protein 883 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100750500 PE=3 SV=1 CANONICAL=A0A9J7G4N5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HUG3", "url": "https://www.uniprot.org/uniprotkb/G3HUG3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HUG3", "url": "https://www.uniprot.org/uniprotkb/G3HUG3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G4N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 235, "end_pos": 262, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G4N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N5" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 109, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FWJ0-1", "uniprot_ac": "A0A9J7FWJ0", "uniprot_id": "A0A9J7FWJ0_CRIGR", "mass": { "chemical_mass": 39893.0, "monoisotopic_mass": 39893.0 }, "refseq": { "ac": "XP_016835079", "name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835079" }, "gene_names": [ { "name": "Ogfod2", "type": "recommended", "evidence": [ { "id": "A0A9J7FWJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ] }, { "name": "Ogfod2", "type": "synonym", "evidence": [ { "id": "XP_016835079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835079" } ] } ], "protein_names": [ { "name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016835079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835079" }, { "id": "A0A9J7FWJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614852.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835079" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ogfod2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWJ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWJ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772290", "url": "https://www.ncbi.nlm.nih.gov/gene/100772290", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772290", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQAFVDE", "url": "https://omabrowser.org/oma/group/CQAFVDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FWJ0", "url": "https://www.orthodb.org/?gene=A0A9J7FWJ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I4Y7", "url": "https://www.orthodb.org/?gene=G3I4Y7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24014", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24014", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24014:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24014:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835079", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FW83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4Y7", "url": "https://www.uniprot.org/uniprotkb/G3I4Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4Y7-1", "url": "https://www.uniprot.org/uniprotkb/G3I4Y7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATAASRRFCRCACFCSQNLYVARYGLHLRFRDEQQLRRDYGPLLRSRGCVTPKDFQQLLEELEQEVRRRRRLGQESAARKALIASSYRPARPDIYSLLQLSRVLPQDEALAPEFVAAAEYSASPGASFEGLLQWLEIVSEQKRIYRVPVFSVGFCQALLEELEHFEQSDMPKGRPNTMNNYGVLIHELGLDEPLVTPLRERFLQPLLALLYPECGGGQLDSHRAFVVKYALGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPAALMEPLEVDHVVGQGILHRGGQLHGARPLGTGERWNLVIWLRASAVRNHLCPMCCQKPDLVDDEGFGDGFTREEPATVDVCVLT", "length": 356, "header": "tr|A0A9J7FWJ0-1|A0A9J7FWJ0_CRIGR Isoform 1 of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ogfod2 PE=4 SV=1 CANONICAL=A0A9J7FWJ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FW83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0/entry#A0A9J7FW83-1", "sequence": { "sequence": "MPKGRPNTMNNYGVLIHELGLDEPLVTPLRERFLQPLLALLYPECGGGQLDSHRAFVVKYALGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPAALMEPLEVDHVVGQGILHRGGQLHGARPLGTGERWNLVIWLRASAVRNHLCPMCCQKPDLVDDEGFGDGFTREEPATVDVCVLT", "length": 186, "header": "tr|A0A9J7FW83-1|A0A9J7FW83_CRIGR Computationally mapped isoform of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ogfod2 PE=4 SV=1 CANONICAL=A0A9J7FWJ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0/entry#A0A9J7FWJ0-1", "sequence": { "sequence": "MATAASRRFCRCACFCSQNLYVARYGLHLRFRDEQQLRRDYGPLLRSRGCVTPKDFQQLLEELEQEVRRRRRLGQESAARKALIASSYRPARPDIYSLLQLSRVLPQDEALAPEFVAAAEYSASPGASFEGLLQWLEIVSEQKRIYRVPVFSVGFCQALLEELEHFEQSDMPKGRPNTMNNYGVLIHELGLDEPLVTPLRERFLQPLLALLYPECGGGQLDSHRAFVVKYALGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPAALMEPLEVDHVVGQGILHRGGQLHGARPLGTGERWNLVIWLRASAVRNHLCPMCCQKPDLVDDEGFGDGFTREEPATVDVCVLT", "length": 356, "header": "tr|A0A9J7FWJ0-1|A0A9J7FWJ0_CRIGR Isoform 1 of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ogfod2 PE=4 SV=1 CANONICAL=A0A9J7FWJ0-1" }, "locus": {} }, { "isoform_ac": "G3I4Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0/entry#G3I4Y7-1", "sequence": { "sequence": "MATAASRRFCRCACFCSQNLYVARYGLHLRFRDEQQLRRDYGPLLRSRGCVTPKDFQQLLEELEQEVRRRRRLGQESAARKALIASSYRPARPDIYSLLQDEALAPEFVAAAEYSASPGASFEGLLQWLEIVSEQKRIYRVPVFSVGFCQALLEELEHFEQSDMPKGRPNTMNNYGVLIHELGLDEPLVTPLRERFLQPLLALLYPECGGGQLDSHRAFVVKYALGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPAALMEPLEVDHVVGQGILHRGGQLHGARPLGTGERWNLVIWLRASAVRNHLCPMCCQKPDLVDDEGFGDGFTREEPATVDVCVLT", "length": 349, "header": "tr|G3I4Y7-1|A0A9J7FWJ0_CRIGR Computationally mapped isoform of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ogfod2 PE=4 SV=1 CANONICAL=A0A9J7FWJ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I4Y7", "url": "https://www.uniprot.org/uniprotkb/G3I4Y7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I4Y7", "url": "https://www.uniprot.org/uniprotkb/G3I4Y7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772290", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LZ86-1", "protein_name": "2-oxoglutarate and iron dependent oxygenase domain containing 2", "gene_name": "OGFOD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGTAAAPRRFCRCACFCSENLYVARYGLHVRFRSEQQLRQDYEPLEQEVERRRRLGPESAARKALIASSYRPARPEVYNLLQEAALAPEFLAAAEYSASSGADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAELTLNVSLGKAFTGGALYFGDLFQVPSTLAKPLEVEHVVGQGLLHRGGQLHGARPLGTGERWNLVVWLRASAVRNRLCPMCCRKPDLVDDEGFGDGFTREEPATVDVCALT", "length": 331 }, "evidence": [ { "id": "A0A9J7FWJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FWJ0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A3KGZ2-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2", "gene_name": "ogfod2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MERFYTCSCFFTDNIFLEEYKLHVRFVSENQFRKDYQNILRSLGCESESQFRDVIGKIQAEIERRQNHKLKSTERAAVIKEIYTPLHQHVYHLQESFLAPELLEMVKYCASSEANVQGLLKLIQTEAASRVFRFQVFRKEFCKDLLEELEHFEQSDAPKGRPNTMNNYGIVLNELGFDEGFITPLREVYLRPLTALLYSDCGGNCLDSHKAFVVKYDMHEDLNLSYHYDNSEVTLNVSLGKDFTEGNLFFGDMRQVPLSETECVEVEHRVTEGLLHRGQHMHGALSISSGTRWNLIIWMRASRQRNKLCPMCGKRPTLVESDGFSDGFTMDSDGDARANVSCSLT", "length": 345 }, "evidence": [ { "id": "A0A9J7FWJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FWJ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6N063-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2", "gene_name": "OGFOD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATVGAPRHFCRCACFCTDNLYVARYGLHVRFRGEQQLRRDYGPILRSRGCVSAKDFQQLLAELEQEVERRQRLGQESAARKALIASSYHPARPEVYDSLQDAALAPEFLAVTEYSVSPDADLKGLLQRLETVSEEKRIYRVPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLMTPLRERFLQPLMALLYPDCGGGRLDSHRAFVVKYAPGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPTALTEPLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRASAVRNSLCPMCCREPDLVDDEGFGDGFTREEPATVDVCALT", "length": 350 }, "evidence": [ { "id": "A0A9J7FWJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FWJ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQ04-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2", "gene_name": "Ogfod2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATAAQRRFCRCACFCSQNLYVARYGLHLRFRDEHQLRRDYGQLLRSRGCVTSKDFQQLLEELEQEVGRRRRLGQESAVRKALIASSYHPARPEVYSSLQDAALAPEFMAAAEYSTSPGADLEGLLQRLETVSEEKRIYRVPVFSAKFCQTLLEELEHFEQSDMPKGRPNTMNNHGVLMYELGLDDPLVTPLRERFLLPLMALLYPDYGGGYLDSHRAFVVKYALGQDLDLGCHYDNAELTLNVALGKDFTGGALYFGGLFQAPAALKETLEVEHVVGSGILHRGGQLHGARPLCKGERWNLVVWLRASAVRNRLCPMCCQKPELVDDEGFGDGFTREEPTTVDVCVLT", "length": 349 }, "evidence": [ { "id": "A0A9J7FWJ0", "url": "https://omabrowser.org/oma/group/A0A9J7FWJ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen", "id": "GO:0016705", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016705", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FWJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ0" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 221, "end_pos": 315, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FYE2-1", "uniprot_ac": "A0A9J7FYE2", "uniprot_id": "A0A9J7FYE2_CRIGR", "mass": { "chemical_mass": 53982.0, "monoisotopic_mass": 53982.0 }, "refseq": { "ac": "XP_007649439", "name": "TSC22 domain family protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649439" }, "gene_names": [ { "name": "Tsc22d4", "type": "recommended", "evidence": [ { "id": "A0A9J7FYE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2" } ] }, { "name": "Tsc22d4", "type": "synonym", "evidence": [ { "id": "XP_007649439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649439" } ] } ], "protein_names": [ { "name": "TSC22 domain family protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_007649439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649439" }, { "id": "A0A9J7FYE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614921.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649439", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649439" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tsc22d4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FYE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FYE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21941", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21941", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750804", "url": "https://www.ncbi.nlm.nih.gov/gene/100750804", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000580", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000580", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750804", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750804", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YEQEMDH", "url": "https://omabrowser.org/oma/group/YEQEMDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FYE2", "url": "https://www.orthodb.org/?gene=A0A9J7FYE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I653", "url": "https://www.orthodb.org/?gene=G3I653", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47610", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47610", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47610:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47610:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01166", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01166", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649439", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649439", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FYE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I653", "url": "https://www.uniprot.org/uniprotkb/G3I653", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I653-1", "url": "https://www.uniprot.org/uniprotkb/G3I653-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDSPASPAPVGPPPRLPNGEPNPDSGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPNFGRLLEGIRGASGGTGGRSLDSRLELASLGISTSIPQPGLSQSPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQPLPSLRVDVESGSSAAGTPPLSRRRDGAVPLRMELVGPDESGKVASIDSRPSSPALYFDASLAHKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMVLFWKCKTKPSMSEQPKKHPLKGVEKTSMDFGTIKLAKPHKESKVSDLDACPGVLEPCVLATVKERPTMHHESRQSRSLVQLSQTVVHSVSTLMFSALQSGWRLCRWKSSMSSASVSSRMRTGSALETTEAEMLREVYLVLWVIRKQLRELARRQERRRRRRMRSHASHTSRHSDPVQGLKQDARSPL", "length": 506, "header": "tr|A0A9J7FYE2-1|A0A9J7FYE2_CRIGR Isoform 1 of TSC22 domain family protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsc22d4 PE=4 SV=1 CANONICAL=A0A9J7FYE2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FYE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2/entry#A0A9J7FYE2-1", "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDSPASPAPVGPPPRLPNGEPNPDSGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPNFGRLLEGIRGASGGTGGRSLDSRLELASLGISTSIPQPGLSQSPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQPLPSLRVDVESGSSAAGTPPLSRRRDGAVPLRMELVGPDESGKVASIDSRPSSPALYFDASLAHKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMVLFWKCKTKPSMSEQPKKHPLKGVEKTSMDFGTIKLAKPHKESKVSDLDACPGVLEPCVLATVKERPTMHHESRQSRSLVQLSQTVVHSVSTLMFSALQSGWRLCRWKSSMSSASVSSRMRTGSALETTEAEMLREVYLVLWVIRKQLRELARRQERRRRRRMRSHASHTSRHSDPVQGLKQDARSPL", "length": 506, "header": "tr|A0A9J7FYE2-1|A0A9J7FYE2_CRIGR Isoform 1 of TSC22 domain family protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsc22d4 PE=4 SV=1 CANONICAL=A0A9J7FYE2-1" }, "locus": {} }, { "isoform_ac": "G3I653-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2/entry#G3I653-1", "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDSPASPAPVGPPPRLPNGEPNPDSGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPNFGRLLEGIRGASGGTGGRSLDSRLELASLGISTSIPQPGLSQSPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQPLPSLRVDVESGSSAAGTPPLSRRRDGAVPLRMELVGPDESGKVASIDSRPSSPALYFDASLAHKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGLARLGPSAPNGPSI", "length": 387, "header": "tr|G3I653-1|A0A9J7FYE2_CRIGR Computationally mapped isoform of TSC22 domain family protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsc22d4 PE=4 SV=1 CANONICAL=A0A9J7FYE2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I653", "url": "https://www.uniprot.org/uniprotkb/G3I653" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I653", "url": "https://www.uniprot.org/uniprotkb/G3I653" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750804", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750804", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BFH5-1", "protein_name": "TSC22 domain family member 4", "gene_name": "TSC22D4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGGKKKSSFQITSVTLDYEGPGSPGGSDAPALPAPPGPPAPTGPSAPAPTGPPPRLPNGEPNPEPGGKSTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPSFSRLLEGIRGASGGNGGRSLDSRLELASLGLGAPTPQPGLSQVPTSWLRPPPTSPGPQARSFTGGLGQLAVPGKAKVETPPLSASPPQQRPPEPGTADSAGPSRAATPLPTLRVEAEAGGSAAAAAAAAGTPPLSRVKDGALRLRMELVAPEEMGQVPPVDSRPSSPALYFFPDASLVHKSPDPLGTVAAQSLNFARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV", "length": 415 }, "evidence": [ { "id": "A0A9J7FYE2", "url": "https://omabrowser.org/oma/group/A0A9J7FYE2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1RMY6-1", "protein_name": "TSC22 domain family member 4", "gene_name": "TSC22D4", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGGRKKSSFQITSVTTDYEGPGSPGGSDPPALPAPTGPPPRLPNGEPNPEPGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPSFGRLLEGIRGASGGTGGRSLDSRLELASLGLSAPAPQPGLSQGPTSWLRPPPTSPGPQARSLTGGLGQLAVPSKAKVETPPLSVSPPQQRPPEPGTGDSTGTSRAATPLPSLRVEVEAGGSTAGTPPLPWTKDGALRLRMEETGQVPPLDSRPGSPALYFFPEASLVRKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV", "length": 390 }, "evidence": [ { "id": "A0A9J7FYE2", "url": "https://omabrowser.org/oma/group/A0A9J7FYE2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3B8N7-1", "protein_name": "TSC22 domain family protein 4", "gene_name": "Tsc22d4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDPPAPPAPAGPPPRLPNGEPNPDPGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPSFGRLLEGIRGASGGTGGRSLDSRLELASLGISTPIPQPGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQTLPSLRVEVESGGLAAGTPPLSRRRDGAVRLRMELVAPEETGKVPPIDSRPNSPALYFDASLVHKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGLPRLGPSAPNGPSI", "length": 387 }, "evidence": [ { "id": "A0A9J7FYE2", "url": "https://omabrowser.org/oma/group/A0A9J7FYE2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQN3-1", "protein_name": "TSC22 domain family protein 4", "gene_name": "Tsc22d4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDSPVPPALAGPPPRLPNGDPNPDPGGRGTPRNGSPPPGAPASRFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPSFGRLLEGIRGASGGTGGRSLDSRLELASLGISTPIPQPGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQTLPSLRVEVESGGSAAATPPLSRRRDGAVRLRMELVAPAETGKVPPTDSRPNSPALYFDASLVHKSPDPFGAAAAQSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAALEQENGLLRALASPEQLAQLPSSGLPRLGPSAPNGPSI", "length": 387 }, "evidence": [ { "id": "A0A9J7FYE2", "url": "https://omabrowser.org/oma/group/A0A9J7FYE2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3Q8-1", "protein_name": "TSC22 domain family protein 4", "gene_name": "TSC22D4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGGKKKSSFQITSVTTDYEGPGSPGASDPPTPQPPTGPPPRLPNGEPSPDPGGKGTPRNGSPPPGAPSSRFRVVKLPHGLGEPYRRGRWTCVDVYERDLEPHSFGGLLEGIRGASGGAGGRSLDSRLELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLVVPSKAKAEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSLRVEAEAGGSGARTPPLSRRKAVDMRLRMELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHKSPDPFGAVAAQKFSLAHSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRELAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV", "length": 395 }, "evidence": [ { "id": "A0A9J7FYE2", "url": "https://omabrowser.org/oma/group/A0A9J7FYE2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2" } ], "pmid": "" }, { "name": "response to osmotic stress", "id": "GO:0006970", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006970", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G001-1", "uniprot_ac": "A0A9J7G001", "uniprot_id": "A0A9J7G001_CRIGR", "mass": { "chemical_mass": 42490.0, "monoisotopic_mass": 42490.0 }, "refseq": { "ac": "XP_027272486", "name": "transmembrane protein 121 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272486" }, "gene_names": [ { "name": "Tmem121", "type": "recommended", "evidence": [ { "id": "A0A9J7G001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001" } ] }, { "name": "Tmem121", "type": "synonym", "evidence": [ { "id": "XP_027272486", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272486" } ] } ], "protein_names": [ { "name": "Transmembrane protein 121 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 121 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027272486", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272486" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272486" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G001", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem121", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001", "locus": {} } ], "crossref": [ { "id": "A0A9J7G001", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G001", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754344", "url": "https://www.ncbi.nlm.nih.gov/gene/100754344", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754344", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754344", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QATLWEP", "url": "https://omabrowser.org/oma/group/QATLWEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G001", "url": "https://www.orthodb.org/?gene=A0A9J7G001", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IAZ2", "url": "https://www.orthodb.org/?gene=G3IAZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31046", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31046", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31046:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31046:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14997", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14997", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272486", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G001", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G001-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IAZ2", "url": "https://www.uniprot.org/uniprotkb/G3IAZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IAZ2-1", "url": "https://www.uniprot.org/uniprotkb/G3IAZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTNGSELAGQERQRAPGSWTNPAPGCAAPCRRVECRGRCSGTQQDLVPLCVGTARARAEPGPLTMVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPSQRNSVPPPAPLHGPPVRPHGPSPTRDALDT", "length": 383, "header": "tr|A0A9J7G001-1|A0A9J7G001_CRIGR Isoform 1 of Transmembrane protein 121 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem121 PE=3 SV=1 CANONICAL=A0A9J7G001-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G001-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001/entry#A0A9J7G001-1", "sequence": { "sequence": "MRTNGSELAGQERQRAPGSWTNPAPGCAAPCRRVECRGRCSGTQQDLVPLCVGTARARAEPGPLTMVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPSQRNSVPPPAPLHGPPVRPHGPSPTRDALDT", "length": 383, "header": "tr|A0A9J7G001-1|A0A9J7G001_CRIGR Isoform 1 of Transmembrane protein 121 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem121 PE=3 SV=1 CANONICAL=A0A9J7G001-1" }, "locus": {} }, { "isoform_ac": "G3IAZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G001/entry#G3IAZ2-1", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPSQRNSVPPPAPLHGPPVRPHGPSPTRDALDT", "length": 318, "header": "tr|G3IAZ2-1|A0A9J7G001_CRIGR Computationally mapped isoform of Transmembrane protein 121 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem121 PE=3 SV=1 CANONICAL=A0A9J7G001-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IAZ2", "url": "https://www.uniprot.org/uniprotkb/G3IAZ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IAZ2", "url": "https://www.uniprot.org/uniprotkb/G3IAZ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754344", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754344", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZMR5-1", "protein_name": "Transmembrane protein 121", "gene_name": "Tmem121", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPSQRNSVPPPPPLHGPPVRPHGPSPTRDALDT", "length": 318 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7F5Q9-1", "protein_name": "Transmembrane protein 121", "gene_name": "tmem121aa", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLPPPDKRHVCLTTIVIMTSMAFMDAYLVEQNQGPRKIGVCIIVLVGDICFLIVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFVFQNYKADRKSLETVARKALTLLLSVCVPGLYLVLVALDSMEYVRTFRKKEDMRGRLFWVALDLLDVLDIQANLWEPQRTGLPIWAEGLMFFYCYILLLILPCVSLSEISVQGEHVSPQKMMLYPVLSLVTINIVTILIRGVNMVLFQDSRVSTIFIGKNVVAIATKACTFLEYRRQVKEFPPQDPAGIAMEIQQNSVPHNQTLPNATTTLPEEPSPAREVIDT", "length": 316 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3MZ75-1", "protein_name": "Transmembrane protein 121", "gene_name": "TMEM121", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQASLWEPPRSGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPAPQRNSVPPPQPLHGPPGRPRGPSPTRDALDT", "length": 318 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "K7ZLB0-1", "protein_name": "Transmembrane protein 121", "gene_name": "TMEM121", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPPQRNSVPPPPPLHGPPGRPHGPSPTRDALDT", "length": 318 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q80XA0-1", "protein_name": "Transmembrane protein 121", "gene_name": "Tmem121", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQANLWEPPRTGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALALELQPPPSQRNSVPPPPPLHGPPVRPHGPSPTRDALDT", "length": 318 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8QFN3-1", "protein_name": "Transmembrane protein 121", "gene_name": "TMEM121", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLPPPDKRHVCLTTIVIMTSMAFMDAYLVEQNQGPRKIGVCIIVLVGDICFLIVLRYVAVWVGAEVKTAKRGYAMILWFLYIFVLEIKLYFIFQNYKADKKNLETVARKALTLLLSICVPGLYLVLVALDSMEYIRTFRKKEDLRGRLFWVALDLLDILDIQANLWEPHRTGLPIWAEGLMFFYCYILLLILPCVSLSEISMQGEHIAPQKMMLYPVLSLVTINIVTIFIRAINMVLFQDSRVSTIFIGKNIIAIATKACTFLEYKRQVKEFPQNAIALELQQNSLSHNQTLHSTQGIPHEPSPTSEILDT", "length": 312 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9BTD3-1", "protein_name": "Transmembrane protein 121", "gene_name": "TMEM121", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLPPPDRRHVCLTTLVIMGSMAVMDAYLVEQNQGPRKIGVCIIVLVGDVCFLLVLRYVAVWVGAEVRTAKRGYAMILWFLYIFVLEIKLYFIFQNYKAARRGAADPVARKALTLLLSVCVPGLFLLLVALDRMEYVRTFRKREDLRGRLFWVALDLLDLLDMQASLWEPPRSGLPLWAEGLTFFYCYMLLLVLPCVALSEVSMQGEHIAPQKMMLYPVLSLATVNVVAVLARAANMALFRDSRVSAIFVGKNVVALATKACTFLEYRRQVRDFPPPALSLELQPPPPQRNSVPPPPPPLHGPPGRPHMSSPTRDPLDT", "length": 319 }, "evidence": [ { "id": "A0A9J7G001", "url": "https://omabrowser.org/oma/group/A0A9J7G001/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZR7-1", "uniprot_ac": "A0A9J7FZR7", "uniprot_id": "A0A9J7FZR7_CRIGR", "mass": { "chemical_mass": 40221.0, "monoisotopic_mass": 40221.0 }, "refseq": { "ac": "XP_027272290", "name": "uncharacterized protein C14orf28 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272290" }, "gene_names": [ { "name": "CUNH14orf28", "type": "recommended", "evidence": [ { "id": "A0A9J7FZR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7" } ] }, { "name": "CUNH14orf28", "type": "synonym", "evidence": [ { "id": "XP_027272290", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272290" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C14orf28 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FZR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C14orf28 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027272290", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272290" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272290" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH14orf28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZR7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755612", "url": "https://www.ncbi.nlm.nih.gov/gene/100755612", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755612", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755612", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HDNFTRN", "url": "https://omabrowser.org/oma/group/HDNFTRN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FZR7", "url": "https://www.orthodb.org/?gene=A0A9J7FZR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IBJ6", "url": "https://www.orthodb.org/?gene=G3IBJ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35350", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35350", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35350:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35350:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027272290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272290", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IBJ6", "url": "https://www.uniprot.org/uniprotkb/G3IBJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IBJ6-1", "url": "https://www.uniprot.org/uniprotkb/G3IBJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRGAAAAAAPGLSMSERRRRRVRRHGGLRSRGRMKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENESFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDELFCSKIELCEERGCGGLREFSQRIFCHGAPPFVVLNMQHWKPEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 344, "header": "tr|A0A9J7FZR7-1|A0A9J7FZR7_CRIGR Isoform 1 of Uncharacterized protein C14orf28 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH14orf28 PE=4 SV=1 CANONICAL=A0A9J7FZR7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7/entry#A0A9J7FZR7-1", "sequence": { "sequence": "MRRGAAAAAAPGLSMSERRRRRVRRHGGLRSRGRMKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENESFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDELFCSKIELCEERGCGGLREFSQRIFCHGAPPFVVLNMQHWKPEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 344, "header": "tr|A0A9J7FZR7-1|A0A9J7FZR7_CRIGR Isoform 1 of Uncharacterized protein C14orf28 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH14orf28 PE=4 SV=1 CANONICAL=A0A9J7FZR7-1" }, "locus": {} }, { "isoform_ac": "G3IBJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR7/entry#G3IBJ6-1", "sequence": { "sequence": "MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENESFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDELFCSKIELCEERGCGGLREFSQRIFCHGAPPFVVLNMQHWKPEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 310, "header": "tr|G3IBJ6-1|A0A9J7FZR7_CRIGR Computationally mapped isoform of Uncharacterized protein C14orf28 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH14orf28 PE=4 SV=1 CANONICAL=A0A9J7FZR7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IBJ6", "url": "https://www.uniprot.org/uniprotkb/G3IBJ6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IBJ6", "url": "https://www.uniprot.org/uniprotkb/G3IBJ6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755612", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755612", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AS79-1", "protein_name": "Similar to human chromosome 14 open reading frame 28", "gene_name": "Dorip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTAREKGVLLAEKLRLGSFPGSVHLKALGWRQVFYLCMGMCTVYMPCAPRGKKRALDSWNWSYRQWMKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENDNFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLVIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDELFCSKIELCEERGCGGLREFSQRVFCHGAPPFVVLNMQHWKSEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 376 }, "evidence": [ { "id": "A0A9J7FZR7", "url": "https://omabrowser.org/oma/group/A0A9J7FZR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SIN4-1", "protein_name": "Chromosome 1 C14orf28 homolog", "gene_name": "DORIP1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENENFPRELSLHLGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEIPHGNLIRLAVDELFCSRIELCEERGCGGLREFSQRVFCHGAPPFVVLNMQHWKSEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 310 }, "evidence": [ { "id": "A0A9J7FZR7", "url": "https://omabrowser.org/oma/group/A0A9J7FZR7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q2KIN3-1", "protein_name": "Dopamine receptor-interacting protein 1", "gene_name": "DORIP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENENFPRELSLHLGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTINIKCGGLREFSQRVFCHGAPPFVVLNMQHWKSEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 280 }, "evidence": [ { "id": "A0A9J7FZR7", "url": "https://omabrowser.org/oma/group/A0A9J7FZR7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4KL13-1", "protein_name": "Dopamine receptor-interacting protein 1", "gene_name": "Dorip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENESFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLVIDLFGNEHDNFTKNLENLMSTIQGSYCSNWHCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDELFCSKIELCEERGCGGLREFSQRVFCHGAPPFVVLNMQHWKPEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 310 }, "evidence": [ { "id": "A0A9J7FZR7", "url": "https://omabrowser.org/oma/group/A0A9J7FZR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q4W4Y0-1", "protein_name": "Dopamine receptor-interacting protein 1", "gene_name": "DORIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKTLFEEIKASIKNNYNQDRSFCRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLMLLYVILNENENFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEIPHGNLIRLAVNELFCSKIELCEEHGCGGLREFSQRIFCHGAPPFVVLNMQHWKSEDLAYVPYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIGGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK", "length": 310 }, "evidence": [ { "id": "A0A9J7FZR7", "url": "https://omabrowser.org/oma/group/A0A9J7FZR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G878-1", "uniprot_ac": "A0A9J7G878", "uniprot_id": "A0A9J7G878_CRIGR", "mass": { "chemical_mass": 36755.0, "monoisotopic_mass": 36755.0 }, "refseq": { "ac": "XP_027276257", "name": "cobalamin trafficking protein CblD isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276257" }, "gene_names": [ { "name": "Mmadhc", "type": "recommended", "evidence": [ { "id": "A0A9J7G878", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ] }, { "name": "Mmadhc", "type": "synonym", "evidence": [ { "id": "XP_027276257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276257" } ] } ], "protein_names": [ { "name": "Cobalamin trafficking protein CblD isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7G878", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878/entry#names_and_taxonomy" } ] }, { "name": "cobalamin trafficking protein CblD isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027276257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276257" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276257", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276257" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mmadhc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878", "locus": {} } ], "crossref": [ { "id": "A0A9J7G878", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G878", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751326", "url": "https://www.ncbi.nlm.nih.gov/gene/100751326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751326", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751326", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PECCGMI", "url": "https://omabrowser.org/oma/group/PECCGMI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G878", "url": "https://www.orthodb.org/?gene=A0A9J7G878", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IH14", "url": "https://www.orthodb.org/?gene=G3IH14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13192:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13192:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276257", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276257", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G878-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IH14", "url": "https://www.uniprot.org/uniprotkb/G3IH14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IH14-1", "url": "https://www.uniprot.org/uniprotkb/G3IH14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPARGLPCTSRGDRNPAGFFAKGRNLRPSSSLEMAHVLCNRARLVSYLPGFCSLVKRVISPKAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNMGFDCHLNGTASQKKSLTHKTLPDVLAEPLSTERHEFVMAQYVNEFQSSDAPVEQEINSAETYFESARVECVIQTCPELLQRDFETLFPEVANNKLMILTVTQKTENDMTAWSEEVEVEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVFVGSIFTNAAADSHIMRKLSGN", "length": 330, "header": "tr|A0A9J7G878-1|A0A9J7G878_CRIGR Isoform 1 of Cobalamin trafficking protein CblD isoform X3 OS=Cricetulus griseus OX=10029 GN=Mmadhc PE=4 SV=1 CANONICAL=A0A9J7G878-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G878-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878/entry#A0A9J7G878-1", "sequence": { "sequence": "MVPARGLPCTSRGDRNPAGFFAKGRNLRPSSSLEMAHVLCNRARLVSYLPGFCSLVKRVISPKAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNMGFDCHLNGTASQKKSLTHKTLPDVLAEPLSTERHEFVMAQYVNEFQSSDAPVEQEINSAETYFESARVECVIQTCPELLQRDFETLFPEVANNKLMILTVTQKTENDMTAWSEEVEVEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVFVGSIFTNAAADSHIMRKLSGN", "length": 330, "header": "tr|A0A9J7G878-1|A0A9J7G878_CRIGR Isoform 1 of Cobalamin trafficking protein CblD isoform X3 OS=Cricetulus griseus OX=10029 GN=Mmadhc PE=4 SV=1 CANONICAL=A0A9J7G878-1" }, "locus": {} }, { "isoform_ac": "G3IH14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878/entry#G3IH14-1", "sequence": { "sequence": "MAHVLCNRARLVSYLPGFCSLVKRVISPKAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNMGFDCHLNGTASQKKSLTHKTLPDVLAEPLSTERHEFVMAQYVNEFQSSDAPVEQEINSAETYFESARVECVIQTCPELLQRDFETLFPEVANNKLMILTVTQKTENDMTAWSEEVEVEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVFVGSIFTNAAADSHIMRKLSGN", "length": 296, "header": "tr|G3IH14-1|A0A9J7G878_CRIGR Computationally mapped isoform of Cobalamin trafficking protein CblD isoform X3 OS=Cricetulus griseus OX=10029 GN=Mmadhc PE=4 SV=1 CANONICAL=A0A9J7G878-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IH14", "url": "https://www.uniprot.org/uniprotkb/G3IH14" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IH14", "url": "https://www.uniprot.org/uniprotkb/G3IH14" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751326", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0UYB6-1", "protein_name": "Metabolism of cobalamin associated Db", "gene_name": "mmadhcb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASVLCSRARLVTYLPGLHVLVHRVVGARSFSGASGSDEPHLNTSTPDIAPRTVWPDESMGPFGPQDKRFQLPGNVGFDCHLESPVEQRTTSVHSVMPDVLTAQSNNQRHDFILAQFINELHEDDKTSTAQNMDKAEQFFDHSSVECAIQSCPELLKRDFESMFPEAPSTGMMVVTVTQRTQNDMTAWTEQVDQEREELLAKFIEGAKEICHALRNEGFWADFIDPSSGLAYFGSYTNNTLFETDDRYRHLGFQIEDLGCCKVIRHVMWGTHAFVGTLFTSAPPNSQIMKKLQGDLS", "length": 297 }, "evidence": [ { "id": "A0A9J7G878", "url": "https://omabrowser.org/oma/group/A0A9J7G878/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3LE45-1", "protein_name": "Metabolism of cobalamin associated D", "gene_name": "MMADHC", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYVNEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQKTKNDMTVWSEEVENEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMRKLSGN", "length": 296 }, "evidence": [ { "id": "A0A9J7G878", "url": "https://omabrowser.org/oma/group/A0A9J7G878/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5ZKP2-1", "protein_name": "Cobalamin trafficking protein CblD", "gene_name": "MMADHC", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANVLCNRARLVTYLPGFYSLVKRVVNPKAFSTAGSSGSDEPHVAATPPDLCPRTVWPDEVMGPFGPQDQRFQLPGNIGFDCHLNGTAAQRKSQASKSLPDILAEPSPNERHEFVMAQYINEFQGSDVPQKQQVNNAETYFENAKVECAVQACPELLRKDFESMFPEVNANHLTVLTVTQKTKNDMTVWSQEVEDEREMLLENFINGAKEICYAICSEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHFGFSVDDLGCCKVIRHNIWGTHVVVGSIFTNAEPDSPIMRKLSGN", "length": 296 }, "evidence": [ { "id": "A0A9J7G878", "url": "https://omabrowser.org/oma/group/A0A9J7G878/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q99LS1-1", "protein_name": "Cobalamin trafficking protein CblD", "gene_name": "Mmadhc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHVLCNRARLVSYLPGFCSLVKRVINPRAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSQAHKTLPDVLAEPLSTERHEFVMAQYVNEFQDSDAPVEQEINSAETYFESAKVECAIQTCPELLRRDFESLFPEVANSKLMILTVTQKTENDMTVWSEEVEVEREVLLEKFISGAKEICYALRAEGYWADFIDPSSGVAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATADSSIMRKLSGN", "length": 296 }, "evidence": [ { "id": "A0A9J7G878", "url": "https://omabrowser.org/oma/group/A0A9J7G878/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H3L0-1", "protein_name": "Cobalamin trafficking protein CblD", "gene_name": "MMADHC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANVLCNRARLVSYLPGFCSLVKRVVNPKAFSTAGSSGSDESHVAAAPPDICSRTVWPDETMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSLVHKTLPDVLAEPLSSERHEFVMAQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQKTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMKKLSGN", "length": 296 }, "evidence": [ { "id": "A0A9J7G878", "url": "https://omabrowser.org/oma/group/A0A9J7G878/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cobalamin metabolic process", "id": "GO:0009235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009235", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "molecular carrier activity", "id": "GO:0140104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140104", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G878" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 273, "end_pos": 275 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FWV5-1", "uniprot_ac": "A0A9J7FWV5", "uniprot_id": "A0A9J7FWV5_CRIGR", "mass": { "chemical_mass": 64171.0, "monoisotopic_mass": 64171.0 }, "refseq": { "ac": "XP_007652707", "name": "sialate O-acetylesterase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652707" }, "gene_names": [ { "name": "Siae", "type": "recommended", "evidence": [ { "id": "A0A9J7FWV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ] }, { "name": "Siae", "type": "synonym", "evidence": [ { "id": "XP_007652707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652707" } ] } ], "protein_names": [ { "name": "Sialate O-acetylesterase isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FWV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5/entry#names_and_taxonomy" } ] }, { "name": "sialate O-acetylesterase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652707" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616556.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652707", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652707" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Siae", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWV5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754185", "url": "https://www.ncbi.nlm.nih.gov/gene/100754185", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754185", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754185", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PCEFKAC", "url": "https://omabrowser.org/oma/group/PCEFKAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FWV5", "url": "https://www.orthodb.org/?gene=A0A9J7FWV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IIB1", "url": "https://www.orthodb.org/?gene=G3IIB1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22901:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22901:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28112", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28112", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652707", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652707", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IIB1", "url": "https://www.uniprot.org/uniprotkb/G3IIB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IIB1-1", "url": "https://www.uniprot.org/uniprotkb/G3IIB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSLGSVFGLLLLLIIVRASRSAGEVTLFFGTLAFQISYRILALVPSQGIDFRFGSYIDNYMVLQKEPSGAVIWGFGTPGATVTVTLCQGQNTFKKKVTTVKAHSNTWVVVLDPMKPGGPYEVMAKQTFGITNVTLRIHDILFGDVWLCSGQSNMKMTVLQIFNASKELAVAAAYQSVRIFSASLVQAEEELEDLDKVDLSWSRPTAGNLGNGNYTYMSAVCWLFGRYLYDNLQYPIGLVSSSWGGTPIEAWSSKRALKSCGVPNTSNERILQTTRSECKSEGSLCPLGSFTLPPSVTGPATHSVLWNAMIHPLQKMTLKGVIWYQGESNEDLNRDLYSCMFPALIDDWRQTFHDGSQKQTERFFPFGFVQLSSYAETNTSDYRFPEIRWHQTADFGFVPNLKMPNTFMAVAMDLCDLNSPFGSIHPRDKQTVAYRLHLGARALAYGEKNLAFQGPLPKKIELLAHSRLLSLTYDQKIQVHRQDNKSFEISCCSDRLCKWLPVSVNSFSTKTLILGISACRGTVVDVRYAWTTWPCDYKQCAVYHPSNTLPAPPFTAPITYQAPRFRASDSSTQE", "length": 575, "header": "tr|A0A9J7FWV5-1|A0A9J7FWV5_CRIGR Isoform 1 of Sialate O-acetylesterase isoform X1 OS=Cricetulus griseus OX=10029 GN=Siae PE=4 SV=1 CANONICAL=A0A9J7FWV5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5/entry#A0A9J7FWV5-1", "sequence": { "sequence": "MVSLGSVFGLLLLLIIVRASRSAGEVTLFFGTLAFQISYRILALVPSQGIDFRFGSYIDNYMVLQKEPSGAVIWGFGTPGATVTVTLCQGQNTFKKKVTTVKAHSNTWVVVLDPMKPGGPYEVMAKQTFGITNVTLRIHDILFGDVWLCSGQSNMKMTVLQIFNASKELAVAAAYQSVRIFSASLVQAEEELEDLDKVDLSWSRPTAGNLGNGNYTYMSAVCWLFGRYLYDNLQYPIGLVSSSWGGTPIEAWSSKRALKSCGVPNTSNERILQTTRSECKSEGSLCPLGSFTLPPSVTGPATHSVLWNAMIHPLQKMTLKGVIWYQGESNEDLNRDLYSCMFPALIDDWRQTFHDGSQKQTERFFPFGFVQLSSYAETNTSDYRFPEIRWHQTADFGFVPNLKMPNTFMAVAMDLCDLNSPFGSIHPRDKQTVAYRLHLGARALAYGEKNLAFQGPLPKKIELLAHSRLLSLTYDQKIQVHRQDNKSFEISCCSDRLCKWLPVSVNSFSTKTLILGISACRGTVVDVRYAWTTWPCDYKQCAVYHPSNTLPAPPFTAPITYQAPRFRASDSSTQE", "length": 575, "header": "tr|A0A9J7FWV5-1|A0A9J7FWV5_CRIGR Isoform 1 of Sialate O-acetylesterase isoform X1 OS=Cricetulus griseus OX=10029 GN=Siae PE=4 SV=1 CANONICAL=A0A9J7FWV5-1" }, "locus": {} }, { "isoform_ac": "G3IIB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5/entry#G3IIB1-1", "sequence": { "sequence": "MVSLGSVFGLLLLLIIVRASRSAGIDFRFGSYIDNYMVLQKEPSGAVIWGFGTPGATVTVTLCQGQNTFKKKVTTVKAHSNTWVVVLDPMKPGGPYEVMAKQTFGITNVTLRIHDILFGDVWLCSGQSNMKMTVLQIFNASKELAVAAAYQSVRIFSASLVQAEEELEDLDKVDLSWSRPTAGNLGNGNYTYMSAVCWLFGRYLYDNLQYPIGLVSSSWGGTPIEAWSSKRALKSCGVPNTSNERILQTTRSECKSEGSLCPLGSFTLPPSVTGPATHSVLWNAMIHPLQKMTLKGVIWYQGESNEDLNRDLYSCMFPALIDDWRQTFHDGSQKQTERFFPFGFVQLSSYAETNTSDYRFPEIRWHQTADFGFVPNLKMPNTFMAVAMDLCDLNSPFGSIHPRDKQTVAYRLHLGARALAYGEKNLAFQGPLPKKIELLAHSRLLSLTYDQKIQVHRQDNKSFEISCCSDRLCKWLPVSVNSFSTKTLILGISACRGTVVDVRYAWTTWPCDYKQCAVYHPSNTLPAPPFTAPITYQAPRFRASDSSTQE", "length": 550, "header": "tr|G3IIB1-1|A0A9J7FWV5_CRIGR Computationally mapped isoform of Sialate O-acetylesterase isoform X1 OS=Cricetulus griseus OX=10029 GN=Siae PE=4 SV=1 CANONICAL=A0A9J7FWV5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IIB1", "url": "https://www.uniprot.org/uniprotkb/G3IIB1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IIB1", "url": "https://www.uniprot.org/uniprotkb/G3IIB1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754185", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754185", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1S7B2-1", "protein_name": "Sialate O-acetylesterase", "gene_name": "SIAE", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVALGFVFGLVLSLLLPADASADVGFRFASYIDNYMVLQKEPAGAVIWGYGVSGATVTVTLCQDQETIMKKVTSVKAPSSSWMVVLDPVKPGGPYEVIAQQTYGRMNFTLRVHDVLFGDVWLCSGQSNMQMTVSQIFNATSELSDTAAYQSVRILAVSLNQALQELEDLAGVDLRWSKPTSENLGHGDFKYMSAVCWLFGRYLYDTLQYPVGLIASSWAGTPIEAWSSERSLKACGVPRFIPSDFGTGPSENSVLWNAMVHPLHNMTLKGVIWYQGESNINFNRDLYNCTFPALIEDWRQTFHRGSQGQTERFFPFGFVQLSSFLSGATSSEGLPHIRWHQTADFGYVPNLRMPNTFMAVAMDLCDRNSPFGSAHPRDKQTVAYRLHLGARAVAYGEKLTFQGPLPQKMELLADRGLLNLTYSQQILVQRQDKKIFEVSCCSDQQCKWLPAPMDTFSTQTLALDITSCQDTLVAVRYAWSTWPCEYKQCPLYHPTSTLPAPPFTAFITNQIPDDLSKGQMISMHYDHILL", "length": 530 }, "evidence": [ { "id": "A0A9J7FWV5", "url": "https://omabrowser.org/oma/group/A0A9J7FWV5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P70665-1", "protein_name": "Sialate O-acetylesterase", "gene_name": "Siae", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSPGPVFGIVLLIIARVSRSAGIGFRFASYIDNYMVLQKEPSGAVIWGFGTPGATVTVTLCQGQETIMKKVTSVKEPSNTWMVVLDPMKPGGPFEVMAQQTLGTMNFTLRVHDVLFGDVWLCSGQSNMQMTVSQIFNASKELSDTAAYQSVRIFSVSLIQSEEELDDLTEVDLSWSKPTAGNLGHGNFTYMSAVCWLFGRYLYDTLQYPIGLVSSSWGGTYIEVWSSRRTLKACGVPNTRDERVGQPEIKPMRNECNSEESSCPFRVVPSVRVTGPTRHSVLWNAMIHPLQNMTLKGVVWYQGESNADYNRDLYTCMFPELIEDWRQTFHYGSQGQTDRFFPFGFVQLSSYMLKNSSDYGFPEIRWHQTADFGHVPNPKMPNTFMAVAIDLCDRDSPFGSIHPRDKQTVAYRLHLGARAVAYGEKNLTFQGPLPKKIELLASNGLLNLTYDQEIQVQMQDNKTFEISCCSDRHCKWLPAPVNTFSTQTLILDLNACLGTVVAVRYAWTTWPCEYKQCAVYHTSSMLPAPPFIAQISHRGI", "length": 541 }, "evidence": [ { "id": "A0A9J7FWV5", "url": "https://omabrowser.org/oma/group/A0A9J7FWV5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P82450-1", "protein_name": "Sialate O-acetylesterase", "gene_name": "Siae", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSPRPVGLMLLLIIARVSRGAGIGFRFASYIDNYMVLQKEPSGAVIWGFGTAGATVTVTLCQGQETIMKKVTSVKGPSNTWMVVLDPMKPGGPFEVMAQQTLETTNLTLRVHDVLFGDVWLCSGQSNMQMTVLQIFNASKELSDTAAYQSVRIFSVSLTQAEEELADLDGVDLSWSKPTAGNLGHGNFTYMSAVCWLFGRYLYDTLQYPIGLVSSSWGGTPIEVWSSRRALKACGVPNTRDERVLQPEIKPMRNGCESKESSCPFRRFVPCDPVAGPATHSVLWNAMIHPLQNMTLKGVVWYQGENNANYNRDLYACMFPALIAGWRQTFHSGCQGQTERFFPFGFVQLSSYLLMNSSDYGFPEIRWHQTADFGSVPNPKMPNTFMAVAMDLCDRDSPFGSIHPRDKQTVAYRLHLGARAVAYGEKNLTFQGPLPKKIELLARNELLNLTYDQEIQVQRKDNKTFEISCCSDHQCKWLPAPVNTFSTQTLILDLSACLGTVDAVRYAWTTWPCEYKQCAVYHTSSVLPAPPFTARITHRGI", "length": 542 }, "evidence": [ { "id": "A0A9J7FWV5", "url": "https://omabrowser.org/oma/group/A0A9J7FWV5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LUX8-1", "protein_name": "3.1.1.53", "gene_name": "siae", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLTPVFSSLVLSAFATVLSAGEVFRFSSYYGSYMILQKAPAKSVVWGFGQTGAKVVVSLSGSHLLEQTYIAPVINGIWRTTLKPMEAGGPYTLTAYHSTTNSSIVLKDVLFGDIWLCSGQSNMAFTVGQVINATEELTMASKFPDVRIFQAALEQSKKELTDLAGVEVPWSKPTPGLLGGKDFSHFSAVCWLFGRYLYEKRKYPIGLVHSSWGGTPVEAWSSPRALQKCGLKSSVISEQNTWSSSVLWNAMIHPLLNMTITGAIWYQGEANANYNRDKYNCTFPGMIDDWRMAFHEGSEGQTALDFPFGFVQLCTYKTKDPTDGFREIRWHQTADYGFVPNKRMKNTFMAVAVDVPDEKSPWGSIHPEDKQDVAFRLVLGARAVAYGEKNVTFQGPFPTQAVLGNSYITIVFNQDIKASHEDGYFEICCSEDRKCETDDKWTPVAISSSGLNYIFLEIPPCPASITAVRYLWTDWPCKFKACPIYSYDGLLPAPPFILGVTNQRPTTVF", "length": 509 }, "evidence": [ { "id": "A0A9J7FWV5", "url": "https://omabrowser.org/oma/group/A0A9J7FWV5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9HAT2-1", "protein_name": "Sialate O-acetylesterase", "gene_name": "SIAE", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVAPGLVLGLVLPLILWADRSAGIGFRFASYINNDMVLQKEPAGAVIWGFGTPGATVTVTLRQGQETIMKKVTSVKAHSDTWMVVLDPMKPGGPFEVMAQQTLEKINFTLRVHDVLFGDVWLCSGQSNMQMTVLQIFNATRELSNTAAYQSVRILSVSPIQAEQELEDLVAVDLQWSKPTSENLGHGYFKYMSAVCWLFGRHLYDTLQYPIGLIASSWGGTPIEAWSSGRSLKACGVPKQGSIPYDSVTGPSKHSVLWNAMIHPLCNMTLKGVVWYQGESNINYNTDLYNCTFPALIEDWRETFHRGSQGQTERFFPFGLVQLSSDLSKKSSDDGFPQIRWHQTADFGYVPNPKMPNTFMAVAMDLCDRDSPFGSIHPRDKQTVAYRLHLGARALAYGEKNLTFEGPLPEKIELLAHKGLLNLTYYQQIQVQKKDNKIFEISCCSDHRCKWLPASMNTVSTQSLTLAIDSCHGTVVALRYAWTTWPCEYKQCPLYHPSSALPAPPFIAFITDQGPGHQSNVAK", "length": 523 }, "evidence": [ { "id": "A0A9J7FWV5", "url": "https://omabrowser.org/oma/group/A0A9J7FWV5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sialate O-acetylesterase activity", "id": "GO:0001681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001681", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 214, "end_pos": 216 }, { "start_pos": 265, "end_pos": 267 }, { "start_pos": 379, "end_pos": 381 }, { "start_pos": 485, "end_pos": 487 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G5J4-1", "uniprot_ac": "A0A9J7G5J4", "uniprot_id": "A0A9J7G5J4_CRIGR", "mass": { "chemical_mass": 24449.0, "monoisotopic_mass": 24449.0 }, "refseq": { "ac": "XP_003495310", "name": "shieldin complex subunit 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495310" }, "gene_names": [ { "name": "Shld1", "type": "recommended", "evidence": [ { "id": "A0A9J7G5J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ] }, { "name": "Shld1", "type": "synonym", "evidence": [ { "id": "XP_003495310", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495310" } ] } ], "protein_names": [ { "name": "Shieldin complex subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G5J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4/entry#names_and_taxonomy" } ] }, { "name": "shieldin complex subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495310", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495310" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613587.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003495310.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495310", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495310" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Shld1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5J4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5J4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773847", "url": "https://www.ncbi.nlm.nih.gov/gene/100773847", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773847", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773847", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHPTTAC", "url": "https://omabrowser.org/oma/group/NHPTTAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G5J4", "url": "https://www.orthodb.org/?gene=A0A9J7G5J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GSD1", "url": "https://www.orthodb.org/?gene=G3GSD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36863", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36863", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36863:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36863:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495310", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495310", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GSD1", "url": "https://www.uniprot.org/uniprotkb/G3GSD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GSD1-1", "url": "https://www.uniprot.org/uniprotkb/G3GSD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFFLSFLELIAGPMESQADTPSSESVESCTLNLPTACDIRGHEACQGASQAASSKSLSSLESHSFPCSSTADTDSSSLNTEQKEGSWDSENFWLDPSVTGQLETSEEEDGLRKSLDRFYEAFAYPLPGSGDQLSVPVCQCLSQTISELQGQESQEYALRSFQMARVIFNRDGCSILQRHSRETRFYPLEQGSNSLEDVELTPGLSREIIRFLLEQPVMKDS", "length": 221, "header": "tr|A0A9J7G5J4-1|A0A9J7G5J4_CRIGR Isoform 1 of Shieldin complex subunit 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Shld1 PE=4 SV=1 CANONICAL=A0A9J7G5J4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4/entry#A0A9J7G5J4-1", "sequence": { "sequence": "MFFLSFLELIAGPMESQADTPSSESVESCTLNLPTACDIRGHEACQGASQAASSKSLSSLESHSFPCSSTADTDSSSLNTEQKEGSWDSENFWLDPSVTGQLETSEEEDGLRKSLDRFYEAFAYPLPGSGDQLSVPVCQCLSQTISELQGQESQEYALRSFQMARVIFNRDGCSILQRHSRETRFYPLEQGSNSLEDVELTPGLSREIIRFLLEQPVMKDS", "length": 221, "header": "tr|A0A9J7G5J4-1|A0A9J7G5J4_CRIGR Isoform 1 of Shieldin complex subunit 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Shld1 PE=4 SV=1 CANONICAL=A0A9J7G5J4-1" }, "locus": {} }, { "isoform_ac": "G3GSD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4/entry#G3GSD1-1", "sequence": { "sequence": "MESQADTPSSESVESCTLNLPTACDIRGHEACQGASQAASSKSLSSLESHSFPCSSTADTDSSSLNTEQKEGSWDSENFWLDPSVTGQLETSEEEDGLRKSLDRFYEAFAYPLPGSGDQLSVPVCQCLSQTISELQGQESQEYALRSFQMARVIFNRDGCSILQRHSRETRFYPLEQGSNSLEDVELTPGLSREIIRFLLEQPVMKDS", "length": 208, "header": "tr|G3GSD1-1|A0A9J7G5J4_CRIGR Computationally mapped isoform of Shieldin complex subunit 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Shld1 PE=4 SV=1 CANONICAL=A0A9J7G5J4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GSD1", "url": "https://www.uniprot.org/uniprotkb/G3GSD1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GSD1", "url": "https://www.uniprot.org/uniprotkb/G3GSD1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773847", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773847", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LC25-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "Shld1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCIQLKMLLWWLLQSVFNFLCPESDKRGWSGAGYRLNKVIEISELCSRKLHWKNNLHHGKKRHQNSPMDSQAATPSSLSEESCTLDLPMVCDSMGYEASQGASQGSDSTSLSSLEPHPFPSSSTADSDSNSLTTEQKGSWDSENFWLDPSSKGQVETNEEEDGLRKSLDRFYEAFAQPLPGSGDPLSAPVCQCLSQTISELEGQESQKYALRSFQMARVIFSRDGCSTLQRHSRETRFYPLEQEGSSVDDEEPTPGLSREVIRFLLEQTIMKDS", "length": 275 }, "evidence": [ { "id": "A0A9J7G5J4", "url": "https://omabrowser.org/oma/group/A0A9J7G5J4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KIJ1-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "SHLD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATQETTPGSQTEESNALDLPSAYDIRDYVLQRPSQQTNSEAFSSEEACSIPCSSDVDPDSSNLNTEQNDSWTSENFWFYPSVKGQPETKEEDDGLRKSLDKFYEVFGNPQPASGNSLSTSVCQCLSQKINELKDQENQTYTLRSFQMARVIFNQNGCSILQKHSRDAHFYPVREGSTSLQDEKLTPGLSKDIIHFLLQQNLMKDQ", "length": 206 }, "evidence": [ { "id": "A0A9J7G5J4", "url": "https://omabrowser.org/oma/group/A0A9J7G5J4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8IYI0-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "SHLD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDTSNLNIEQNNSWTAENFWLDPAVKGQSEKEEDDGLRKSLDRFYEMFGHPQPGSANSLSASVCKCLSQKITQLRGQESQKYALRSFQMARVIFNRDGCSVLQRHSRDTHFYPLEEGSTSLDDEKPNPGLSKDITHFLLQQNVMKDL", "length": 205 }, "evidence": [ { "id": "A0A9J7G5J4", "url": "https://omabrowser.org/oma/group/A0A9J7G5J4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D112-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "Shld1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESQAATPSSLSGESCTLDLPAVCDTSSYEASQRVSQGSSNSLSSLESHPFLSSSTTDPDSNSLNTEQKGSWDSENFWLDPSSKGQLETNEEEDGLRKSLDRFYEAFAHPLPGSGDPLSASVCQCLSQTISELEGQESQRYALRSFQMAQVIFSRDGCSILQRHSRDTRFYPLEQEGSSVDDEEPTPGLSREVIRFLLEQTVMKDS", "length": 206 }, "evidence": [ { "id": "A0A9J7G5J4", "url": "https://omabrowser.org/oma/group/A0A9J7G5J4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of double-strand break repair via homologous recombination", "id": "GO:2000042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000042", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair via nonhomologous end joining", "id": "GO:2001034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001034", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ], "pmid": "" }, { "name": "positive regulation of isotype switching", "id": "GO:0045830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045830", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G5J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5J4" }, { "id": "PF15021", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Shieldin complex subunit 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 101, "end_pos": 219, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FX19-1", "uniprot_ac": "A0A9J7FX19", "uniprot_id": "A0A9J7FX19_CRIGR", "mass": { "chemical_mass": 41686.0, "monoisotopic_mass": 41686.0 }, "refseq": { "ac": "XP_027268657", "name": "WD repeat-containing protein 53 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268657" }, "gene_names": [ { "name": "Wdr53", "type": "recommended", "evidence": [ { "id": "A0A9J7FX19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19" } ] }, { "name": "Wdr53", "type": "synonym", "evidence": [ { "id": "XP_027268657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268657" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 53 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268657" }, { "id": "A0A9J7FX19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027268657.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268657" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19", "locus": {} } ], "crossref": [ { "id": "A0A9J7FX19", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FX19", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752565", "url": "https://www.ncbi.nlm.nih.gov/gene/100752565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042453", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042453", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752565", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GDLMVWG", "url": "https://omabrowser.org/oma/group/GDLMVWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FX19", "url": "https://www.orthodb.org/?gene=A0A9J7FX19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GSL3", "url": "https://www.orthodb.org/?gene=G3GSL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44666", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44666", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44666:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44666:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GSL3", "url": "https://www.uniprot.org/uniprotkb/G3GSL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GSL3-1", "url": "https://www.uniprot.org/uniprotkb/G3GSL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLEAAGEVITRRRPRTGRPVLQPIMAVKWTGGHSSSILCLNASKDGLVASGAEGGDLVAWGEDGTLLGRMQLEGADDVTSILFSPSCPTKLYASHGETISVLDIRSLKESVDRFHVNDEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEEMEGPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGKVRIFRVMGVKCERELGFKGHALGVSQVCFLTESHLLLTGGNDGKIRLWNVSSEMEKKQKSPAKHTHRKKAKRAACPKQGRDSSTTGADEEEHAKVLPKLDIEHGEKVNWLLSSKIKGHQSILVADQTSCVSVYPLNEL", "length": 383, "header": "tr|A0A9J7FX19-1|A0A9J7FX19_CRIGR Isoform 1 of WD repeat-containing protein 53 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr53 PE=4 SV=1 CANONICAL=A0A9J7FX19-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19/entry#A0A9J7FV30-1", "sequence": { "sequence": "MGLEAAGEVITRRRPRTGRPVLQPIMAVKWTGGHSSSILCLNASKDGLVASGAEGGDLVAWGEDGTLLGRMQLEGADDVTSILFSPSCPTKLYASHGETISVLDIRSLKESVDRFHVNDEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEEMEGPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGKVCFLTESHLLLTGGNDGKIRLWNVSSEMEKKQKSPAKHTHRKKAKRAACPKQGRDSSTTGADEEEHAKVLPKLDIEHGEKVNWLLSSKIKGHQSILVADQTSCVSVYPLNEL", "length": 357, "header": "tr|A0A9J7FV30-1|A0A9J7FX19_CRIGR Computationally mapped isoform of WD repeat-containing protein 53 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr53 PE=4 SV=1 CANONICAL=A0A9J7FX19-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FX19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19/entry#A0A9J7FX19-1", "sequence": { "sequence": "MGLEAAGEVITRRRPRTGRPVLQPIMAVKWTGGHSSSILCLNASKDGLVASGAEGGDLVAWGEDGTLLGRMQLEGADDVTSILFSPSCPTKLYASHGETISVLDIRSLKESVDRFHVNDEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEEMEGPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGKVRIFRVMGVKCERELGFKGHALGVSQVCFLTESHLLLTGGNDGKIRLWNVSSEMEKKQKSPAKHTHRKKAKRAACPKQGRDSSTTGADEEEHAKVLPKLDIEHGEKVNWLLSSKIKGHQSILVADQTSCVSVYPLNEL", "length": 383, "header": "tr|A0A9J7FX19-1|A0A9J7FX19_CRIGR Isoform 1 of WD repeat-containing protein 53 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr53 PE=4 SV=1 CANONICAL=A0A9J7FX19-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19/entry#A0A9J7GZY9-1", "sequence": { "sequence": "MGLEAAGEVITRRRPRTGRPVLQPIMAVKWTGGHSSSILCLNASKDGLVASGAEGGDLVAWGEDGTLLGRMQLEGADDVTSILFSPSCPTKLYASHGETISVLDIRSLKESVDRFHVNDEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEEMEGPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGLLSDGVPSAAYWRE", "length": 258, "header": "tr|A0A9J7GZY9-1|A0A9J7GZY9_CRIGR Computationally mapped isoform of WD repeat-containing protein 53 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr53 PE=4 SV=1 CANONICAL=A0A9J7FX19-1" }, "locus": {} }, { "isoform_ac": "G3GSL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19/entry#G3GSL3-1", "sequence": { "sequence": "MAVKWTGGHSSSILCLNASKDGLVASGAEGGDLVAWGEDGTLLGRMQLEGADDVTSILFSPSCPTKLYASHGETISVLDIRSLKESVDRFHVNDEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEEMEGPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGKVRIFRVMGVKCERELGFKGHALGVSQVCFLTESHLLLTGGNDGKIRLWNVSSEMEKKQKSPAKHTHRKKAKRAACPKQGRDSSTTGADEEEHAKVLPKLDIEHGEKVNWLLSSKIKGHQSILVADQTSCVSVYPLNEL", "length": 358, "header": "tr|G3GSL3-1|A0A9J7FX19_CRIGR Computationally mapped isoform of WD repeat-containing protein 53 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr53 PE=4 SV=1 CANONICAL=A0A9J7FX19-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GSL3", "url": "https://www.uniprot.org/uniprotkb/G3GSL3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GSL3", "url": "https://www.uniprot.org/uniprotkb/G3GSL3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752565", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752565", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZVA2-1", "protein_name": "WD repeat domain 53", "gene_name": "WDR53", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVKWTGGHSSPILCLNASQEGLVASGAEGGDLTVWGEDGTPLGHTCFQGADDVTSVLFSPSCPTKLYASHGETISILDVRSLKGSLDHFHVNEEEINCLSLNETENLLASADDSGTIKILDLENKKVSRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLQKARPLWITNLQEDEAEEMESPQSPGQLLNPALAHSVSVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKGHTLGISQVCFLPGSYLLLTGGNDGKIMLWDISSEVEKKQKSPAKHTHRKKTKRAIGNKQGRNTHASVTGEDEHGKILPKLSLEHGEKVNWLLGTKIKGYQNILVADQTNCISVYPLKEF", "length": 358 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0ZZZ2-1", "protein_name": "WD repeat domain 53", "gene_name": "WDR53", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRGVGVPAERSGPAPTAMAVRWEGGHSASVLCLAAGREGLVASGAERGELALWGREGVPAGRLRLSPAEDDVAALAFSPRLPHRLYAAHGAAVALLDVRALREPVERLRFNEEEIGCLALSDAGALLAAADDSGAVKVVDLESKKVVRSLRHANICSSVAFRPQRPQSLVSCGLDMQVMLWNLQKARPLWTTNLQECGTEEDSLQSAGQLFNPPLAHSLSVASCGNVFGCGAQDGKVRIFRVTGLKFERELEFRGHSLGVSQVLFMPESYCLLTGGNDGKVLLWDVSNDIGKQQKSPAKSLHKRKGQAAATARKDGKLNKVASNEHARILPKLTIEHGEKVNWITCAEIKGSRRVLVADQSSSISVYPLPES", "length": 372 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F4KEM4-1", "protein_name": "Transducin/WD40 repeat-like superfamily protein", "gene_name": "MRA19.19", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEPVSSLCFKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSKGRSQKIIDFGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVKVYSIS", "length": 360 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q32KQ2-1", "protein_name": "WD repeat-containing protein 53", "gene_name": "WDR53", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVKWTGGHSSPILCLNASQEGLVASGAEGGDLVVWGEDGTLLGHTCFQGAEDVTNVLFSPSCPTKLYASHGETISILDVRSLKEPLDDFHVNEEEINCLSLNETENLLASADDSGTIKILDLENKKISRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLRKARPLWITNLQEDETEEMESPQSPGQLLNPALAHSVSVASCGNVFSCGAEDGKVRIFRVMGVKCEQELGFKGHSLGVSQVCFLRESYLLLTGGNDGKIKLWDVSSEIEKKHKSPTKHTHRKKTKRAAYTKQGGGTHASVTGEDEHGKILPKLSIEHGEKVNWLLSTKIKGYRNILVADQTSCISVYPLKEF", "length": 358 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54BI5-1", "protein_name": "WD repeat-containing protein 53 homolog", "gene_name": "wdr53", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTSVDINNNNNNNNNSNSNIIETKLIGHKDTVLCISSHNKKEIIASGSDDCTVRIWDLNTNKSIQSIVEGFQGNPVNNVCFDQDFTLYCSYDNIIVSFDLRQPNVILKEFNTQYKFNTEEINQLSFDSKYQYLAACDDSGQTKIIDVTKNKLVESLNKKHTNIATGCVFRPNSKNELITSSMDFSIIHWDFLKAKVLHRDTFKEGSLPQNISKSQQQQQETTEPNRMLNPPFVTSVDCSNNSKYVAISMGDGTIVINEISSFKQYLKINSIHKSSIQQVHYPKYLENNYQRLISFGNYDKKIVIWDVSEDMNTKVSSSLLSNDEKNNERIKTWLEHSEKINCLTTSNLKNNAIFVADLSNDLKLLSIQ", "length": 368 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7Z5U6-1", "protein_name": "WD repeat-containing protein 53", "gene_name": "WDR53", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVKWTGGHSSPVLCLNASKEGLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYASHGETISVLDVRSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLNIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLNEF", "length": 358 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DB94-1", "protein_name": "WD repeat-containing protein 53", "gene_name": "Wdr53", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVKWTGGHSSSILCLNANKDGLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPTKLYASHGETISVLDVRSLKGSLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEETEGPQTPGRLLNPALAHSVSVASCGNIFSCGAEDGKVRIFRVMGVKCERELGFKGHTLGVSQVCFLPESSLLLTGGNDGRIRLWDVSGKMEKLQKSPARHIHRKKAKRAACPTQGGNSRAPGAEDEGHAKILPKLDIEHGEKVNWLLSTKIKGNKSILVADQTSCVSVYPLNEL", "length": 358 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WBQ1-1", "protein_name": "WD repeat-containing protein 53", "gene_name": "wdr53", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSCVWTGGHGTSILCAGVSCESESLVATGAEGGELTLWSHDGSPVSKLRMSADDDVTCVAFSPSAPCMLYASYGRTVAVLDSRNLKSAVAELADAGEEEINCVSVNEAGGALAAADDSGAVRIIDLQQEKVVRTLRKHDNICSSVTFRPHRPQSLVSAGLDMQVSLWNLPKVRPLWTYSLQDTQEEDAHPQKAGQMFNPPLAHCIDVTSCGDVFACAAEDGYVHLLRVSEDSRLRERAMFKAHSQGASQARFINFLSQPYWLATGGNDGLVALWDISREDVLARKSKGHKRRQKGRAKKKPEAQATHTKSEEEEASSSSCSSETAGGKNEPKLTFQHGEKVNWICPAVLKGKKSLLVTDQRPSPTVYSLDQL", "length": 372 }, "evidence": [ { "id": "A0A9J7FX19", "url": "https://omabrowser.org/oma/group/A0A9J7FX19/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FX19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX19" }, { "id": "PF12894", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12894" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anaphase-promoting complex subunit 4-like WD40", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 164, "start_aa": "His", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FW99-1", "uniprot_ac": "A0A9J7FW99", "uniprot_id": "A0A9J7FW99_CRIGR", "mass": { "chemical_mass": 25076.0, "monoisotopic_mass": 25076.0 }, "refseq": { "ac": "XP_016832322", "name": "UPF0454 protein C12orf49 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832322" }, "gene_names": [ { "name": "Spring1", "type": "recommended", "evidence": [ { "id": "A0A9J7FW99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW99" } ] }, { "name": "Spring1", "type": "synonym", "evidence": [ { "id": "XP_016832322", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832322" } ] } ], "protein_names": [ { "name": "SREBP regulating gene protein", "type": "recommended", "evidence": [ { "id": "A0A9J7FW99", "database": "UniProtKB", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003498093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498093" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G775", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775", "locus": {} } ], "crossref": [ { "id": "A0A9J7G775", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G775", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757487", "url": "https://www.ncbi.nlm.nih.gov/gene/100757487", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757487", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757487", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AYMERYT", "url": "https://omabrowser.org/oma/group/AYMERYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G775", "url": "https://www.orthodb.org/?gene=A0A9J7G775", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H0X2", "url": "https://www.orthodb.org/?gene=G3H0X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003498093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G775", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G775-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H0X2", "url": "https://www.uniprot.org/uniprotkb/G3H0X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H0X2-1", "url": "https://www.uniprot.org/uniprotkb/G3H0X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMSQGVPARAEALGERLRRARVPGVPWRSLLCAERELSRSARMGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPQLIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNLLRELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSILDTVGELQAIELNLNQNQISQISVKISCCPRLKVLRLEENCLELSMLPQSILNDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 281, "header": "tr|A0A9J7G775-1|A0A9J7G775_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 57 OS=Cricetulus griseus OX=10029 GN=Lrrc57 PE=4 SV=1 CANONICAL=A0A9J7G775-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G775-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775/entry#A0A9J7G775-1", "sequence": { "sequence": "MMSQGVPARAEALGERLRRARVPGVPWRSLLCAERELSRSARMGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPQLIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNLLRELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSILDTVGELQAIELNLNQNQISQISVKISCCPRLKVLRLEENCLELSMLPQSILNDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 281, "header": "tr|A0A9J7G775-1|A0A9J7G775_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 57 OS=Cricetulus griseus OX=10029 GN=Lrrc57 PE=4 SV=1 CANONICAL=A0A9J7G775-1" }, "locus": {} }, { "isoform_ac": "G3H0X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775/entry#G3H0X2-1", "sequence": { "sequence": "MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPQLIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNLLRELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSILDTVGELQAIELNLNQNQISQISVKISCCPRLKVLRLEENCLELSMLPQSILNDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 239, "header": "tr|G3H0X2-1|A0A9J7G775_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 57 OS=Cricetulus griseus OX=10029 GN=Lrrc57 PE=4 SV=1 CANONICAL=A0A9J7G775-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H0X2", "url": "https://www.uniprot.org/uniprotkb/G3H0X2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H0X2", "url": "https://www.uniprot.org/uniprotkb/G3H0X2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757487", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757487", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RZ25-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "LRRC57", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGNSALKAHLETAQKTGVFQLTGKGLTEFPEELQKLTSNLRTIDLSNNKIELLPPLIGKFSFLKSLVLNNNKLTVLPEELCRLKKLETLHLNGNHLRQLPAAFGQLSALKTLNLSGNQLRTVPTQLCGLRHLDVVDLSKNQIQNVPDSVGELQAIELNLNQNQISQISVQISHCPRLKVLRLEENCLELSMLPQSILSDSQISLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 238 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SI25-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "LRRC57", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSSNKIESLPPMIIGKFTLLKSLSLNNNRLTVLPDELCHLKKLETLSLNNNHLRELPSTFGQLSALKTLSISGNQLRALPPQLCSLRHLDVVDLSKNQIRSIPDIVGELQVIELNLNQNQISQISVKISCCPRLKVLRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 239 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5FVI3-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "Lrrc57", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQISVRISCCPRLKVLRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA", "length": 239 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DHL5-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "lrrc57", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGNSALKAHLETSQKTGVFQLTGKGLTEFPEDLQKLTANLRTVDLSNNKIEELPAFIGSFQHLKSFTISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDLSKNQIRVVPAEVAELQAIEINLNQNQISSVTQEVSRTPRLKVLRLEENCLELSSIPLSILTDSQVSLLSVEGNLFEVKKMRDLEGYDKYMERFTATKKKFA", "length": 238 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9D1G5-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "Lrrc57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQLGALPPQLCCLRHLDVVDLSKNQIRSIPDTVGELQAIELNLNQNQISQLSVKISCCPRLKVLRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKFRELEGYDKYMERFTATKKKFA", "length": 239 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W3T9-1", "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "Dmel\\CG3040", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGNKQIKQQLETAQKTGILKISLQRLQEFPLQLRAYPNVLKTLDLSENRFERVPDELGKLTLLKHLNLSGNRLVELNEVVGELAKLEVLLLMDNMLTRLPKTLANCTHLKTVNLSNNQLKEFPSMLCGLKQLDVLDLSRNKITDVPADVGGLFVTELNLNQNQISSLAEEVADCPKLKTLRLEENCLQAAAFTPKILKDSKICNLAVDGNLFNSKQFTDLDGYDVYMERYTAVRKKMF", "length": 238 }, "evidence": [ { "id": "A0A9J7G775", "url": "https://omabrowser.org/oma/group/A0A9J7G775/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G775", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G775", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G775" }, { "id": "PF23598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disease resistance R13L4/SHOC-2-like LRR", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 196, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G1K7-1", "uniprot_ac": "A0A9J7G1K7", "uniprot_id": "A0A9J7G1K7_CRIGR", "mass": { "chemical_mass": 48218.0, "monoisotopic_mass": 48218.0 }, "refseq": { "ac": "XP_007638268", "name": "WD repeat-containing protein 89 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638268" }, "gene_names": [ { "name": "Wdr89", "type": "recommended", "evidence": [ { "id": "A0A9J7G1K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7" } ] }, { "name": "Wdr89", "type": "synonym", "evidence": [ { "id": "XP_007638268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638268" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 89", "type": "recommended", "evidence": [ { "id": "A0A9J7G1K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 89 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638268" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613728.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_007638268.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638268" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1K7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1K7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1K7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763001", "url": "https://www.ncbi.nlm.nih.gov/gene/100763001", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763001", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763001", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YHEKTDK", "url": "https://omabrowser.org/oma/group/YHEKTDK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G1K7", "url": "https://www.orthodb.org/?gene=A0A9J7G1K7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H4Y6", "url": "https://www.orthodb.org/?gene=G3H4Y6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22889", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22889", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22889:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22889:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G1K7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H4Y6", "url": "https://www.uniprot.org/uniprotkb/G3H4Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H4Y6-1", "url": "https://www.uniprot.org/uniprotkb/G3H4Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQSASASSMVLPNQGRRAEIRPAEGRAWFLSSSSVGIVAESFIPVDVAADMERIEEQFANLHIVKRSSEPKEPTYLLGIDTSKTVQAEKRSLVAVLCSNASIRIYDKETLNVLREFSGSPGLLNGVRFGNSCDNVYSASTDGTVKCWDARVASEKPMQLFKGYPSNSFISFDVNCKDHIISAGTEKVDDDALLVFWDARTASQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISVDNEDDALVATCNSISSVSCIGWSGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREVTDGKEGHLDYLIGGLYHEKIDRLFVIGGTNTGKIHLMSCTSSGLTHVTSLQGGHAATVRSFCWNMPEDSLLTGGEDAQLLLWKPGAMQKTFTKKDSLKIASSVQQRVRVHSSDSYKRRKQQ", "length": 437, "header": "tr|A0A9J7G1K7-1|A0A9J7G1K7_CRIGR Isoform 1 of WD repeat-containing protein 89 OS=Cricetulus griseus OX=10029 GN=Wdr89 PE=4 SV=1 CANONICAL=A0A9J7G1K7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G1K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7/entry#A0A9J7G1K7-1", "sequence": { "sequence": "MDQSASASSMVLPNQGRRAEIRPAEGRAWFLSSSSVGIVAESFIPVDVAADMERIEEQFANLHIVKRSSEPKEPTYLLGIDTSKTVQAEKRSLVAVLCSNASIRIYDKETLNVLREFSGSPGLLNGVRFGNSCDNVYSASTDGTVKCWDARVASEKPMQLFKGYPSNSFISFDVNCKDHIISAGTEKVDDDALLVFWDARTASQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISVDNEDDALVATCNSISSVSCIGWSGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREVTDGKEGHLDYLIGGLYHEKIDRLFVIGGTNTGKIHLMSCTSSGLTHVTSLQGGHAATVRSFCWNMPEDSLLTGGEDAQLLLWKPGAMQKTFTKKDSLKIASSVQQRVRVHSSDSYKRRKQQ", "length": 437, "header": "tr|A0A9J7G1K7-1|A0A9J7G1K7_CRIGR Isoform 1 of WD repeat-containing protein 89 OS=Cricetulus griseus OX=10029 GN=Wdr89 PE=4 SV=1 CANONICAL=A0A9J7G1K7-1" }, "locus": {} }, { "isoform_ac": "G3H4Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1K7/entry#G3H4Y6-1", "sequence": { "sequence": "MERIEEQFANLHIVKRSSEPKEPTYLLGIDTSKTVQAEKRSLVAVLCSNASIRIYDKETLNVLREFSGSPGLLNGVRFGNSCDNVYSASTDGTVKCWDARVASEKPMQLFKGYPSNSFISFDVNCKDHIISAGTEKVDDDALLVFWDARTASQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISVDNEDDALVATCNSISSVSCIGWSGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREVTDGKEGHLDYLIGGLYHEKIDRLFVIGGTNTGKIHLMSCTSSGLTHVTSLQGGHAATVRSFCWNMPEDSLLTGGEDAQLLLWKPGAMQKTFTKKDSLKIASSVQQRVRVHSSDSYKRRKQQ", "length": 386, "header": "tr|G3H4Y6-1|A0A9J7G1K7_CRIGR Computationally mapped isoform of WD repeat-containing protein 89 OS=Cricetulus griseus OX=10029 GN=Wdr89 PE=4 SV=1 CANONICAL=A0A9J7G1K7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H4Y6", "url": "https://www.uniprot.org/uniprotkb/G3H4Y6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H4Y6", "url": "https://www.uniprot.org/uniprotkb/G3H4Y6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763001", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763001", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1SRR3-1", "protein_name": "WD repeat-containing protein 89", "gene_name": "WDR89", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEKMEEQFANLNIVKRSSETKEPTYLLGIDTSKTISAEKGSLVAVLCSSGSIRIYDKERLNILREFRGYPGLNGVKFASSHDSVYSSCADGTVKCWDARLASNKPVQLFKGYPSNIFISFDISCNDHIICAGTEKVDDDALLVFWDARINSQGLSAPKDPLGAYSETHSDDITQVCFHPRDPNMVVSGSTDGLVNVFDISADNEEDALVTTCNSVSSVSSIGWSGKDYKQIYCMTHDEGFCWWDLNHLDTDEPITRLNIQDVRQVINVKEGVLDYLIGGLYHEKTDRLFVVGGTNQGIIHIMSCTASGLVHVTSLQGGHAATVRSFCWNMQDDSLLTGGEDAQLLLWKPGATEKTFTKKDSMKIASSVYQRVRVHSNDSYKRRKKQ", "length": 386 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3ZBK1-1", "protein_name": "WD repeat-containing protein 89", "gene_name": "WDR89", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEKIEEQFANLNIVKRSSETKEPTYLLGIDTSKTVQTEKGSLVAVLCSNGSIRIHDKERLNVIREFRGYPGLNGVKFANSHDSVYSSCTDGTVKCWDARLASGKPVQLFKGYPSNIFISFDISSNDHVICAGTEKVDDDALLVFWDARINSQDLSTTKEPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISADNEDDALVTTCNSVSSVSFIGWSGKDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNVPDVREVINVKEGILDYLIGGLYHEKTDKLFVVGGTNTGIIRIMNCMTSGLVHVTSLQGGHAATVRSFCWNMQDDSLLTGGEDAQLLLWKPGAVEKTFTKKDSMKIASSVHQRVRVHSNDSYKRRKKQ", "length": 386 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5FVP5-1", "protein_name": "WD repeat-containing protein 89", "gene_name": "Wdr89", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKIKDQFANLHILRRSSEPKEPTYLLGIDTSKTVPAEKGGLVAVLCSNGSIRIYDKETLNLLREFSGSPGLLNGVRFANSCDNVYSASTDGTVKCWDARLASEKPAQLFKGYPSNIFISFDVNCKDHIICAGAEKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDLSVDNEEDALVATCNSVSSVSCIGWCGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVRDVTDVKEGHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGLSHVTSLQGGHAATVRSFCWTVSEDSLLTGGEDAQLLLWKPGAVEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRKQQ", "length": 386 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q944S2-1", "protein_name": "WD repeat-containing protein GTS1", "gene_name": "GTS1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEEVSSEMEVEVQNRQLSDSSPAQNVKKFGLKNSIQTNFGSDYVFQIVPKIDWTAIAVSLSTNTVKLYSPVTGQYYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDTGNDQEIFSFSYGGAADNLLAGGCKEQVLLWDWRNSKQVACLEESHMDDVTQVHFVPNKPNKLLSASVDGLICLFNTEGDINDDDHLESVINVGTSIGKIGFLGDGYKKLWCLTHIETLSIWNWEDGSCEVNLEKARELASDSWTQDNVDYFVDCHCPGGEDLWVIGGTCAGTVGYFPVNYKQPGSIGTAEAILGGGHIDVVRSVLQMPGEYGGAAGLFGWTGGEDGRLCCWKSDEDATEINRSWTSSELVVKPPRNRKKNRHSPY", "length": 392 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96FK6-1", "protein_name": "WD repeat-containing protein 89", "gene_name": "WDR89", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKIEEQFANLHIVKCSLGTKEPTYLLGIDTSKTVQAGKENLVAVLCSNGSIRIYDKERLNVLREFSGYPGLLNGVRFANSCDSVYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTTCNSISSVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVVNMKEDALDYLIGGLYHEKTDTLHVIGGTNKGRIHLMNCSMSGLTHVTSLQGGHAATVRSFCWNVQDDSLLTGGEDAQLLLWKPGAIEKTFTKKESMKIASSVHQRVRVHSNDSYKRRKKQ", "length": 387 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D0R9-1", "protein_name": "WD repeat-containing protein 89", "gene_name": "Wdr89", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKIEDQFASLHIVRRSSEPKEPTYLLGIDTSKTVQADKGGLVAVLCSNGSIRIYDKETLHLLREFGGSPGLLSGVSFANSCDSVYSASTDGTVKCWDARGASEKPVQLFKGYPSCSFISFDVNCKDHVICAGAEKVDEDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALVATCNSVSSVSCIGWCGKDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREITDVKDGHLDYLIGGLYHEKMDRLFVIGGTNTGKIHLLSCTSAGLTHVTSLHGGHAATVRSFCWNVSEDSLLTGGEDAQLLLWKPGAMEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRKQQ", "length": 386 }, "evidence": [ { "id": "A0A9J7G1K7", "url": "https://omabrowser.org/oma/group/A0A9J7G1K7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G256-1", "uniprot_ac": "A0A9J7G256", "uniprot_id": "A0A9J7G256_CRIGR", "mass": { "chemical_mass": 47872.0, "monoisotopic_mass": 47872.0 }, "refseq": { "ac": "XP_016829609", "name": "protein phosphatase 1 regulatory subunit 36 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829609" }, "gene_names": [ { "name": "Ppp1r36", "type": "recommended", "evidence": [ { "id": "A0A9J7G256", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256" } ] }, { "name": "Ppp1r36", "type": "synonym", "evidence": [ { "id": "XP_016829609", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829609" } ] } ], "protein_names": [ { "name": "Protein phosphatase 1 regulatory subunit 36 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G256", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 1 regulatory subunit 36 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016829609", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829609" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613728.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829609", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829609" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G256", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp1r36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256", "locus": {} } ], "crossref": [ { "id": "A0A9J7G256", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G256", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765040", "url": "https://www.ncbi.nlm.nih.gov/gene/100765040", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765040", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PAQMQEH", "url": "https://omabrowser.org/oma/group/PAQMQEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G0Z6", "url": "https://www.orthodb.org/?gene=A0A9J7G0Z6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G256", "url": "https://www.orthodb.org/?gene=A0A9J7G256", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G579", "url": "https://www.orthodb.org/?gene=A0A9J7G579", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H4Z9", "url": "https://www.orthodb.org/?gene=G3H4Z9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21055:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21055:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829609", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829609", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I2U4", "url": "https://www.uniprot.org/uniprotkb/A0A061I2U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I2U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I2U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G256", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G256-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G579", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G579-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G579-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H4Z9", "url": "https://www.uniprot.org/uniprotkb/G3H4Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H4Z9-1", "url": "https://www.uniprot.org/uniprotkb/G3H4Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMRNKSLDSFLMALLYYLSYYLEKMSMQKKPQSYMVGLVEKKEMELVISKLEDAQKYLAQKYCFLVLGVGMADKHHMNCGKYACASAALREKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 412, "header": "tr|A0A9J7G256-1|A0A9J7G256_CRIGR Isoform 1 of Protein phosphatase 1 regulatory subunit 36 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "isoforms": [ { "isoform_ac": "A0A061I2U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#A0A061I2U4-1", "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMRNKSLDSFLMALLYYLSYYLEKMSMQKKPQSYMVGLVEKKEMELVISKLEDAQKYLAQKYCFLVLGVGMADKHHMNCGKEKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 403, "header": "tr|A0A061I2U4-1|A0A9J7G256_CRIGR Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 36 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#A0A9J7G0Z6-1", "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMRGLVEKKEMELVISKLEDAQKYLAQKYCFLVLGVGMADKHHMNCGKYACASAALREKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 379, "header": "tr|A0A9J7G0Z6-1|A0A9J7G0Z6_CRIGR Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 36 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G256-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#A0A9J7G256-1", "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMRNKSLDSFLMALLYYLSYYLEKMSMQKKPQSYMVGLVEKKEMELVISKLEDAQKYLAQKYCFLVLGVGMADKHHMNCGKYACASAALREKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 412, "header": "tr|A0A9J7G256-1|A0A9J7G256_CRIGR Isoform 1 of Protein phosphatase 1 regulatory subunit 36 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G579-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#A0A9J7G579-1", "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMRNKSLDSFLMALLYYLSYYLEKMSMQKKPQSYMVEKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 358, "header": "tr|A0A9J7G579-1|A0A9J7G579_CRIGR Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 36 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "locus": {} }, { "isoform_ac": "G3H4Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256/entry#G3H4Z9-1", "sequence": { "sequence": "MGSVPEFYSKRRHYDAQPSNSLDQYGLRLGMWYWKDETKTLEFRSFTPAVELKDKGKKGKAVHFAEMDGPASERLTDKRFPSRDEKSLKVLEKRYQLGNITLDDVKFVALLFLQDTEMQRVCSFTTFMREKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEIGRLFRTNMFNIPRRRREDEESGGEKKRMTLVQFRKMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQNIVEKKYVTGIKLPPRMQKETASLDSVVMPVVGILGEPRHLFNPHTLLPLESEENGKQSGRNSSVIERDSIAIQDTLDLVMTTLPSQNTK", "length": 325, "header": "tr|G3H4Z9-1|A0A9J7G256_CRIGR Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 36 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp1r36 PE=4 SV=1 CANONICAL=A0A9J7G256-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H4Z9", "url": "https://www.uniprot.org/uniprotkb/G3H4Z9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H4Z9", "url": "https://www.uniprot.org/uniprotkb/G3H4Z9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765040", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z0R2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 36", "gene_name": "Ppp1r36", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVKSEAMFTVPEFYSRRKQFVGQSSTRLDQCGLRLGMWYWKDETKTLEFKSFTPAIELKEKGKKGKAVHFAEMDSGASERLTDKRFASRDEKAAKALEKRSQQGNVTLDDVKFVALLSLQDTEMQRICSFTTFLRNKNLDSFLMALLYYLSYYLQRLSMEKNPQSRVVGLIEKKEVELVVNKLEDAQKYLAQKYCILVLGLGMADKHHLSCGKEKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEVGRLFRTNMFNIPRRKHEDEASGGEKKRMTLVQFRRMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQHITEKKYVAGIKLQPREENIITDLESVAMPIVGILGEPRNLFNPNTLLPLELEENTKPSGRSSSIVETNNTKIQNTLSLVMSKLASPSTCPK", "length": 411 }, "evidence": [ { "id": "A0A9J7G256", "url": "https://omabrowser.org/oma/group/A0A9J7G256/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q68FW6-1", "protein_name": "Protein phosphatase 1 regulatory subunit 36", "gene_name": "Ppp1r36", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKGETLFSIPELYPRRKQFVGQSSTRLDQCGLRLGMWYWKDETKSLEFRSFTPAVELKEKGKKGKAVHFAEMDGTASERLTDKRFVPRDEKSAKTLEKRGQQGNVTLDDVKFVALLSLQDTEMQRVCSFTTFMRNKSLDSFLMALLYYLSYYLERLSMEKKPQSYMVGLVEKKEIELVMSKLEDAQKYLAQKYCKLVLGVGMADKHHMNCGKDKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLKEIEEEVGRLFRTNMFNIPRRKREDEESGGEKKRMTLVQFRRMMAKRPAIKKAMDMRSPVLSTLLPSLREKAQHIAEKKYVAGIKLQPRVEKDITNLESVVMPVVGILGEPRNLFNPHTLLPLESEENGKTSGRNSSIVERNNTSIQNTLNLVMSKLTSQNSFPK", "length": 411 }, "evidence": [ { "id": "A0A9J7G256", "url": "https://omabrowser.org/oma/group/A0A9J7G256/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96LQ0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 36", "gene_name": "PPP1R36", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYRVPEFYARRKRLGGQTPYLMDQLGLRLGMWYWKDETRTLEFRRFAAEDSVQWLLKHHPHFTPAAEVKEKGKKGKAVHFAETDGPASDRLTDKRLAAKDDKSAKAVEKRGQQGTITLDDVKFVTLLLLQDTEMQRICSFTTFMRNKNLDNFLMALLYYLSHYLEKNSLEKKPKSYMVGLVEKKEMELVLSELEAAQRYLAQKYCILVLGLAVPDKHHMCCGKEKISDTQKDWKFFESFYTFCTYVAWIVFRRQHLTEIEEEVGRLFRTNMFNIPRRRREDEESGGEKKRMTFVQFRRMMAKRPAIKKAINMRSPVMSTLLPSLREKAQNVFEKKYHQVDVRFPAEMQKHVGTLDSVPMPVVGILGEPRCLFNPHTLHPLDPEENTKSFGRYPSLMENNNMRIQDTLDLVMKTLSSHTSCPK", "length": 422 }, "evidence": [ { "id": "A0A9J7G256", "url": "https://omabrowser.org/oma/group/A0A9J7G256/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G256", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G256" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G410-1", "uniprot_ac": "A0A9J7G410", "uniprot_id": "A0A9J7G410_CRIGR", "mass": { "chemical_mass": 151971.0, "monoisotopic_mass": 151971.0 }, "refseq": { "ac": "XP_007638282", "name": "pleckstrin homology domain-containing family G member 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638282" }, "gene_names": [ { "name": "Plekhg3", "type": "recommended", "evidence": [ { "id": "A0A9J7G410", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ] }, { "name": "Plekhg3", "type": "synonym", "evidence": [ { "id": "XP_007638282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638282" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family G member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G410", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family G member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638282" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613728.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638282" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekhg3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765328", "url": "https://www.ncbi.nlm.nih.gov/gene/100765328", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765328", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765328", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VKMWERM", "url": "https://omabrowser.org/oma/group/VKMWERM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G410", "url": "https://www.orthodb.org/?gene=A0A9J7G410", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45924", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45924", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45924:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45924:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638282", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMD4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKZ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G410-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0V6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H205", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H205", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H205-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H205-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKAARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1374, "header": "tr|A0A9J7G410-1|A0A9J7G410_CRIGR Isoform 1 of Pleckstrin homology domain-containing family G member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A8C2MMD4-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPPRHLLRQLNDKARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1343, "header": "tr|A0A8C2MMD4-1|A0A9J7G410_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QKZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A8C2QKZ0-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1344, "header": "tr|A0A8C2QKZ0-1|A0A9J7G410_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G410-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7G410-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKAARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1374, "header": "tr|A0A9J7G410-1|A0A9J7G410_CRIGR Isoform 1 of Pleckstrin homology domain-containing family G member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7G6F0-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPPRHLLRQLNDKARAAGMKGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1225, "header": "tr|A0A9J7G6F0-1|A0A9J7G6F0_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X10 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7GWT3-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKAARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1345, "header": "tr|A0A9J7GWT3-1|A0A9J7GWT3_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7GXY8-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1373, "header": "tr|A0A9J7GXY8-1|A0A9J7GXY8_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7GYI8-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPPRHLLRQLNDKAARAAGMKGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1226, "header": "tr|A0A9J7GYI8-1|A0A9J7GYI8_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X9 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7GZP5-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKARAAGMKVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1217, "header": "tr|A0A9J7GZP5-1|A0A9J7GZP5_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X12 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7H0V6-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKARAAGMKGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1255, "header": "tr|A0A9J7H0V6-1|A0A9J7H0V6_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X8 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7H1B9-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKAARAAGMKGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1256, "header": "tr|A0A9J7H1B9-1|A0A9J7H1B9_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X7 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H205-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7H205-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPPRHLLRQLNDKAARAAGMKHAGSAGALLDFGQLPRARDLQPEAEGAAREELEEEEAIAKEEQQQQTFPVSLEDLAGHEGSEKEPGPELPGSEEEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHRESEGSKSCRRPSDRSPTSAEKRMSFESVSSLPEVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1344, "header": "tr|A0A9J7H205-1|A0A9J7H205_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7H2J7-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPGYTLFSRATLPSRQQGLEMPGLKGRRKSEPPRHLLRQLNDKAARAAGMKVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1218, "header": "tr|A0A9J7H2J7-1|A0A9J7H2J7_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X11 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410/entry#A0A9J7K5Z1-1", "sequence": { "sequence": "MPVSTTLHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWSRHVPNSNNSSGWLNMKGPLSPFNGRAGTGPAYHKLNYLGRVVREIVETERMYVQDLRSIVEDYLSKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNNDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVVDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTFGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTKDSLCFTLTHYKHSKQQYSIQAKTAEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERLKKAWSSQDEVSTHVRQGRRQSEPPRHLLRQLNDKARAAGMKVETDPELGADQEAFTALEVPSTEEMPSDSESPEVLETQLHAPKGLLGVDSPVDVVDFVEPVGPEDLKALSSEEEEEEEGMGTTQESDSLLPPSVLDQASVIAERFASSFSRRSSLAMEDGKSSGLGTPRLISRSSSVLSLEGSEKGLARWGSTGDSLSNPPTPEVVISADMVTDNGPSVNGTESTNSDSGCLAEPGSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDMEPAAPLGYKRPGSSRPASWALFDLPGPSQSGTGDPAPVTDAEFRPSSEIVKIWERMESSERSPQTGPGQSQANGFELQEPLFILEEHELGAITEEFAVASPESSSPPEQPNPAHLAQELKELVKELSSGAQGELVTPLHPRIVQLSHVMDSHMSERVKNKVYQLARQYSLRIKNIKTARPPLQWDKATPDQDEQIPTISGLPEEEAVELLGGKARRKPVLSLLSYEQLMAQDQGTSKFSSAAETSPRRVSLSPSALSPRTTSPGSQPSTRSPLSPFDTETFNWPDVRELCSKYTSHDKAAQAESNWPRGLLVNRSRSLPENIVEPPVSGKVGLCCSMNTKRPQQGGEASHPPPSHPPPQSSLNGGESLYITADLTLENNHRVIVMEKGPHPISTVGLEEGSGKEPSSPVVLKGRGQGFQECAEYHQPKEEGPRDPADTSKQGRVRNLREKFQALNSVG", "length": 1187, "header": "tr|A0A9J7K5Z1-1|A0A9J7K5Z1_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 3 isoform X13 OS=Cricetulus griseus OX=10029 GN=Plekhg3 PE=4 SV=1 CANONICAL=A0A9J7G410-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 816, "start_aa": "Thr", "end_pos": 816, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr816", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKZ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKZ0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKZ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKZ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765328", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765328", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LLV4-1", "protein_name": "Pleckstrin homology and RhoGEF domain containing G3", "gene_name": "Plekhg3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPCRRAWKEACSLPVRPRSCWQVHFFTGVRASFFGIPAYTADPADISSLWTEQLLDIWTFGLRKPNLPEVTVPGSDARMPVSTALHQDGSQERPPSLMSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWGRHIPNSNNNSSSWLNMKGPLSPFNGRAGTGPAYHKLSYLGRVVREIVETERMYVQDLRSIVEDYLLKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNSDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTYGELVLEATFRVHRVRNERTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTRDSLCFTVTHYKHSKQQYSIQAKTVEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERMKKAWSSQDEVSAHVRQGRRQSEPTRHLLRQLSEKARAAGMKHAGSAGALLDFGQLPHAQDQQPEAEEAAREELEEEEEIVEEEEQQQQQTFPVSLEDLAGHGGNEKVPGPELPGSEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGKRHGESEGSKSCRRPSDRSPTSVEKRMSFESVSSMPEESSEQVETDPEPRAEQEAFTALEGPSPEEMPSDPEFPEALETQLHDPKGLLGVDKPAGEVDFVEPEGSEDLKTLSSEEEEEEEMGATQEPESLLPPSVLDQASVIAERFASSFSRRSSLAAEDGKCSGLGTPRLISRSSSVLSLEGSEKGLARWSSTGDSLSNPPAPEVIIGTDTVTDTGPSVNGTESLSAGSGCPTELDRSSCKKKESALSTRDRQLLDRIKSYYENAEHHDASFSIRRRESLSYIPKGLVRNSVSRFNSLPKPDSEPAAPVGYKRPGSSRPASWTLFDLPGPSRADEGDPAPITDAEFRPSSEIAKIWERMESSERSPRTGSGQSQANGFELQEPLFILEEHELGAITEESAVASPESASPTEHPSPAHLARELKELVKELSSGVQGELVTPLHPRIMQLSHVMDSHVSERVKNKVYQLARQYSLRIKNIKAARPPLHWEKATPDGDEPIPSNSGLPVEAGELSGGKARRKPVLSLLSYEQLVAQEPGTSKSSSAVETSPRRFSFSPSAVSPRTTSPGSRSSARSPLSPFDTETFNWPDVRELCSKYTSHDKTAQAESSWPRSLLVNRSRSLPENIIEPPVSGKADYCCSLNTNGRQGDGEASQPPPPESPPQSQLNGGEALYVTADLTLENNRRVIIMEKGSHPSSTMGLEEDSGKEPSSSVVLKGQGQGFQESAEHQPKEDSPRDSADTNKQGRVRNLREKFQALNSVG", "length": 1426 }, "evidence": [ { "id": "A0A9J7G410", "url": "https://omabrowser.org/oma/group/A0A9J7G410/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1L390-1", "protein_name": "Pleckstrin homology domain-containing family G member 3", "gene_name": "PLEKHG3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVSTSLHQDGSQERPVSLTSTTSSSGSSCDSRSAMEEPSSSEAPAKNGAGSLRSRHLPNSNNNSSSWLNVKGPLSPFNSRAAAGPAHHKLSYLGRVVREIVETERMYVQDLRSIVEDYLLKIIDTPGLLKPEQVSALFGNIENIYALNSQLLRDLDSCNSDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMRDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNERTFFLFDKTLLITKKRGDHFVYKGNIPCSSLMLIESTRDSLCFTVTHYKHSKQQYSIQAKTVEEKRNWTHHIKRLILENHHATIPQKAKEAILEMDSYYPNRYRCSPERLKKAWSSQDEVSTNVRQGRRQSEPTKHLLRQLNEKARAAGMKGKGRRESESSRSSRRPSGRSPTSTEKRMSFESISSLPEVEPDPEAGSEQEVFSAVEGPSAEETPSDTESPEVLETQLDAHQGLLGMDPPGDMVDFVAAESTEDLKALSSEEEEEMGGAAQEPESLLPPSVLDQASVIAERFVSSFSRRSSVAQEDSKSSGFGSPRLVSRSSSVLSLEGSEKGLARHGSATDSLSCQLSPEVDISVGVATEDSPSVNGMEPPSPGCPVEPDRSSCKKKESALSTRDRLLLDKIKSYYENAEHHDAGFSVRRRESLSYIPKGLVRNSISRFNSLPRPDPEPVPPVGSKRQVGSRPTSWALFELPGPSQAVKGDPPPISDAEFRPSSEIVKIWEGMESSGGSPGKGPGQGQANGFDLHEPLFILEEHELGAITEESATASPESSSPTEGRSPAHLARELKELVKELSSSTQGELVAPLHPRIVQLSHVMDSHVSERVKNKVYQLARQYSLRIKSNKPVMARPPLQWEKVAPERDGKSPTVPCLQEEAGEPLGGKGKRKPVLSLFDYEQLMAQEHSPPKPSSAGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSPTETFSWPDVRELCSKYASRDEARRAGGGRPRGPPVNRSHSVPENMVEPPLSGRVGRCRSLSTKRGRGGGEAAQSPGPLPQSKPDGGETLYVTADLTLEDNRRVIVMEKGPLPSPTAGLEESSGQGPSSPVALLGQVQDFQQSAECQPKEEGSRDPADPSQQGRVRNLREKFQALNSVG", "length": 1219 }, "evidence": [ { "id": "A0A9J7G410", "url": "https://omabrowser.org/oma/group/A0A9J7G410/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q4VAC9-1", "protein_name": "Pleckstrin homology domain-containing family G member 3", "gene_name": "Plekhg3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVSTALHQDGSQERPRSLVSTTSSSGSSRDSHSAMEEPTGSEASAQNGTGSPWDRHVPNSNNNSSGWLNMKGPLSPFNGRAGTSPAYHKLSYLGRVVREIVETERMYVQDLRSIVEDYLLKIIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLDSCNSDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLGSYLLKPVQRVLKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTYGELVLEATFRVHRVRNDRTFFLFDKILLITKKRGDHFVYKGHIPCSSLMLIESTRDSLCFTVTHYKHSKQQYSIQAKTVEEKRSWTHHIKRLILENHHATIPQKAKEAILEMDSYYPSRYRCSPERMKKAWSSQDEVSSHVRQGRRQSEPGHTLFSRATLPSRQQGFEMPGLKGRRKSEPTRHLLRQLSEKARAVGMKHAGSAGALLDFGQPAHAQKQQPEAERAAREELEEEEELVEEEEQRQQSFSGSLEGLAGHDGSEKVPGPELPGSEEEEEEEESLAVAEQGKRHRESEGSKGCRRPSNRSPTSAEKRMSFESVSSLPEVETDPEPGAEQEAFAALEGPSTEEMPSDPEFPEALETQLHAPKGLLGVDNPAAVVDFVEPEGSEDLKPLSSEEEEEEEMEAAQEPESLLPPSVLDQASVIAERFASSFSRRSSLAIEDGKSSGLGTPRLISRSSSVLSLEGSDKGLARWSSIGDSLSNPPTPEVIIGADMVTDNGPSVNGTESPSAGSGCPTEQDRSSCKKKESALSTRDRQLLDKIKNYYENAEHHDAGFSIRRRESLSYIPKGLVRSSVSRFNSLPKPDSEPAAPVGYKRPGSSRPASWTLFDLPGPRTDKGDPAPITDAEFCPSSEIAKIWERMESSERSPRTGSGQSQANGFELQEPLFILEEHELGAITEESAVASPESASPTEQPSPAHLARELKELVKELSSSVQGELVTPLHPRIVQLSHVMDSHVSERVKNKVYQLARQYSLRIKNIKAARPPLQWEKVTPDQEEQVPSISGLPEEAGELSGGKARRKPVLSLLSYEQLVAQEHGTSKSSAAVETSPRRFSFSPSAVSPRTTSPGARSSARSPLSPFDTETFNWPDVRELCSKYTSHDKTAQVESSWPRSLLVNRSRSLPENIVEPPMSGKADRCCGLNTHRRLGDGEASQPPLPESPPQSQLNGGDALYVTADLTLENNQRVIIMEKGPHPSSTVGLEEDSGKESSSPVALKGQGQGFQASAEYQPKEHGPRDSADTNKQGRVRNLREKFQALNSVG", "length": 1341 }, "evidence": [ { "id": "A0A9J7G410", "url": "https://omabrowser.org/oma/group/A0A9J7G410/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" }, { "name": "regulation of establishment of cell polarity", "id": "GO:2000114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000114", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1229, "end_pos": 1231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 834, "end_pos": 836, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G410", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 271, "start_aa": "Tyr", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G410", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G410" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 295, "end_pos": 393, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 816 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1229, "end_pos": 1231 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 834, "end_pos": 836 } ] }, "class_list": [], "section_stats": [ { "table_id": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275236", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275236" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiss1r", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389", "locus": {} } ], "crossref": [ { "id": "A0A9J7G389", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G389", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15095", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15095", "database": "CDD", "categories": [ "Protein Classification" ] 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"MATEATLGPNATWWAPANASGCPGCGANASDGRDSAPRPLDAWLVPLFFTALMLLGLVGNSLVIYVICRHKHMRTVTNFYIGYSHIWPVLRKETWLFCRCLSCGRANLAATDVTFLLCCVPFTALLYPLPAWVLGDFMCKFVNYIQQVSVQATCATLTAMSVDRWYVTVFPLRALHRRTPRLALAVSLSIWVGECDLGWARTEAQTGERGTGWWGDHGSWVGHVPTLQAQRSSWAGGAGSAAVSAPVLALHRLSPGPHTYCSEAFPSRALERAFALYNLLALYLLPLLATCACYGAMLRHLGRAAVRPAPTDGALQGQLLAQRAGAVRTKVSRLVAAVVLLFAACWGPIQLFLVLQALGPAGAWHPRSYAAYALKIWAHCMSYSNSALNPLLYAFLGSHFRQAFCHVCPCGPRRQRRPHGSALSDRAPTHTTMHSLAAHKASEPGNPAVREHSTQL", "length": 456, "header": "tr|A0A9J7G389-1|A0A9J7G389_CRIGR Isoform 1 of KiSS-1 receptor isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiss1r PE=4 SV=1 CANONICAL=A0A9J7G389-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389/entry#A0A9J7G3H5-1", "sequence": { "sequence": "MATEATLGPNATWWAPANASGCPGCGANASDGRDSAPRPLDAWLVPLFFTALMLLGLVGNSLVIYVICRHKHMRTVTNFYIANLAATDVTFLLCCVPFTALLYPLPAWVLGDFMCKFVNYIQQVSVQATCATLTAMSVDRWYVTVFPLRALHRRTPRLALAVSLSIWVGECDLGWARTEAQTGERGTGWWGDHGSWVGHVPTLQAQRSSWAGGAGSAAVSAPVLALHRLSPGPHTYCSEAFPSRALERAFALYNLLALYLLPLLATCACYGAMLRHLGRAAVRPAPTDGALQGQLLAQRAGAVRTKVSRLVAAVVLLFAACWGPIQLFLVLQALGPAGAWHPRSYAAYALKIWAHCMSYSNSALNPLLYAFLGSHFRQAFCHVCPCGPRRQRRPHGSALSDRAPTHTTMHSLAAHKASEPGNPAVREHSTQL", "length": 432, "header": "tr|A0A9J7G3H5-1|A0A9J7G3H5_CRIGR Computationally mapped isoform of KiSS-1 receptor isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiss1r PE=4 SV=1 CANONICAL=A0A9J7G389-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 311, 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2G4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2G4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753032", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753032", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "G protein-coupled peptide receptor activity", "id": "GO:0008528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008528", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "neuropeptide receptor activity", "id": "GO:0008188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008188", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "phospholipase C-activating G protein-coupled receptor signaling pathway", "id": "GO:0007200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007200", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G389" } ], "pmid": "" }, { "name": "regulation of membrane depolarization", "id": "GO:0003254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003254", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G389", "url": 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Acts as a negative regulator of RANKL-induced osteoclast differentiation, potentially via relocation of TJP2/ZO-2 away from the nucleus, subsequently involved in bone resorption in response to calcium deficiency. 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"mitochondrial potassium channel isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003504290", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504290" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614047.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003504290.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504290" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZA2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZA2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762437", "url": "https://www.ncbi.nlm.nih.gov/gene/100762437", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762437", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762437", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061I4G2", "url": "https://www.orthodb.org/?gene=A0A061I4G2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FZA2", "url": "https://www.orthodb.org/?gene=A0A9J7FZA2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28624", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28624", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28624:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28624:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003504290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504290", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I4G2", "url": "https://www.uniprot.org/uniprotkb/A0A061I4G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I4G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALMTGCSPAFAMQHIVAVPHGLVRRSLLGTDLLMTRTLCSPGPSQPREKRPEAAALGLYHRLPALGRALGHSIQQQATSTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVFMVARSLVREARENLEAQQAKLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRVAYMRAEDSEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEAQKGPVSLQEAIREQASSYSLQQRDLKDLMVDLRGLVHAGQGQGSGSPTGTSSTRGKDIDALSAAMKEQLSHSQQVHSCLEGLRERLDGLEKTYSQMAGLVQLAKATAHPGLEEPADGALPSSLLEQGSMILALSDVEQRLEAQVNRNSIYSTLVTCVTFMATLPVLYMLFKTS", "length": 413, "header": "tr|A0A9J7FZA2-1|A0A9J7FZA2_CRIGR Isoform 1 of Mitochondrial potassium channel isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc51 PE=4 SV=1 CANONICAL=A0A9J7FZA2-1" }, "isoforms": [ { "isoform_ac": "A0A061I4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2/entry#A0A061I4G2-1", "sequence": { "sequence": "MTGCSPAFAMQHIVAVPHGLVRRSLLGTDLLMTRTLCSPGPSQPREKRPEAAALGLYHRLPALGRALGHSIQQQATSTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVFMVARSLVREARENLEAQQAKLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRVAYMRAEDSEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEAQKGPVSLQEAIREQASSYSLQQRDLKDLMVDLRGLVHAGQGQGSGSPTGTSSTRGKDIDALSAAMKEQLSHSQQVHSCLEGLRERLDGLEKTYSQMAGLVQLAKATAHPGLEEPADGALPSSLLEQGSMILALSDVEQRLEAQVNRNSIYSTLVTCVTFMATLPVLYMLFKTS", "length": 410, "header": "tr|A0A061I4G2-1|A0A9J7FZA2_CRIGR Computationally mapped isoform of Mitochondrial potassium channel isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc51 PE=4 SV=1 CANONICAL=A0A9J7FZA2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2/entry#A0A9J7FZA2-1", "sequence": { "sequence": "MALMTGCSPAFAMQHIVAVPHGLVRRSLLGTDLLMTRTLCSPGPSQPREKRPEAAALGLYHRLPALGRALGHSIQQQATSTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVFMVARSLVREARENLEAQQAKLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRVAYMRAEDSEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEAQKGPVSLQEAIREQASSYSLQQRDLKDLMVDLRGLVHAGQGQGSGSPTGTSSTRGKDIDALSAAMKEQLSHSQQVHSCLEGLRERLDGLEKTYSQMAGLVQLAKATAHPGLEEPADGALPSSLLEQGSMILALSDVEQRLEAQVNRNSIYSTLVTCVTFMATLPVLYMLFKTS", "length": 413, "header": "tr|A0A9J7FZA2-1|A0A9J7FZA2_CRIGR Isoform 1 of Mitochondrial potassium channel isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc51 PE=4 SV=1 CANONICAL=A0A9J7FZA2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I4G2", "url": "https://www.uniprot.org/uniprotkb/A0A061I4G2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061I4G2", "url": "https://www.uniprot.org/uniprotkb/A0A061I4G2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762437", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762437", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" }, { "name": "mitochondrial ATP-gated potassium channel complex", "id": "GO:0062157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062157", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell volume homeostasis", "id": "GO:0006884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006884", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" }, { "name": "mitochondrial potassium ion transmembrane transport", "id": "GO:0140141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" }, { "name": "monoatomic ion transmembrane transport", "id": "GO:0034220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034220", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mitochondrial ATP-gated potassium channel activity", "id": "GO:0062156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062156", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 205, "end_pos": 207 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G6X9-1", "uniprot_ac": "A0A9J7G6X9", "uniprot_id": "A0A9J7G6X9_CRIGR", "mass": { "chemical_mass": 53759.0, "monoisotopic_mass": 53759.0 }, "refseq": { "ac": "XP_027276366", "name": "transmembrane protein 143 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276366" }, "gene_names": [ { "name": "Tmem143", "type": "recommended", "evidence": [ { "id": "A0A9J7G6X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9" } ] }, { "name": "Tmem143", "type": "synonym", "evidence": [ { "id": "XP_027276366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276366" } ] } ], "protein_names": [ { "name": "Transmembrane protein 143 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G6X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 143 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027276366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276366" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276366" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem143", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G6X9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G6X9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751205", "url": "https://www.ncbi.nlm.nih.gov/gene/100751205", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751205", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751205", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G6X9", "url": "https://www.orthodb.org/?gene=A0A9J7G6X9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16095", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16095", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16095:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16095:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276366", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HFP0", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HFP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HFP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HFP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6X7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9D9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H445", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H445", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H445-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H445-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRRLNDGRWSAKVREVWGIAWPRLWERGLAMLHVTWGSKVRVWSLVPALFGTPRSLSSLANRMGAYRKMWNPTEPRDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAERAALEAFSGHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 475, "header": "tr|A0A9J7G6X9-1|A0A9J7G6X9_CRIGR Isoform 1 of Transmembrane protein 143 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HFP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#A0A3L7HFP0-1", "sequence": { "sequence": "MTVAGRLRLWERGLAMLHVTWGSKVRVWSLVPALFGTPRSLSSLANRMGAYRKMWNPTEPRDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAERAALEAFSGHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 459, "header": "tr|A0A3L7HFP0-1|A0A9J7G6X9_CRIGR Computationally mapped isoform of Transmembrane protein 143 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#A0A9J7G6X7-1", "sequence": { "sequence": "MRRRLNDGRWSAKALGKGSGHVACDLGVQGPSMVPGACSLRDSPVSVVPGEQDGGVPKDVEPHGAPRLGPAVPRALHSILQGAAAPPPDTGVPLQSGRESSFGGILRSCGLLYPVSLPSAPGQAADVKAKALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 469, "header": "tr|A0A9J7G6X7-1|A0A9J7G6X7_CRIGR Computationally mapped isoform of Transmembrane protein 143 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#A0A9J7G6X9-1", "sequence": { "sequence": "MRRRLNDGRWSAKVREVWGIAWPRLWERGLAMLHVTWGSKVRVWSLVPALFGTPRSLSSLANRMGAYRKMWNPTEPRDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAERAALEAFSGHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 475, "header": "tr|A0A9J7G6X9-1|A0A9J7G6X9_CRIGR Isoform 1 of Transmembrane protein 143 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#A0A9J7G9D9-1", "sequence": { "sequence": "MAQALGKGSGHVACDLGVQGPSMVPGACSLRDSPVSVVPGEQDGGVPKDVEPHGAPRLGPAVPRALHSILQGAAAPPPDTGVPLQSGRESSFGGILRSCGLLYPVSLPSAPGQAADVKAKALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 459, "header": "tr|A0A9J7G9D9-1|A0A9J7G9D9_CRIGR Computationally mapped isoform of Transmembrane protein 143 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H445-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9/entry#A0A9J7H445-1", "sequence": { "sequence": "MLHVTWGSKVRVWSLVPALFGTPRSLSSLANRMGAYRKMWNPTEPRDWAQQYRERFIPFSKEQLLRLLIQEFHSSPAERAALEAFSGHVDFCTLFHYHQLLARLQALYDPINPDRETLDQPSLTDPQRLSSEKDVLQALKPLLAQANFSPLSEDALAYALVVHHPQDEVQVTINLDQYIYMQFWALGQRVGQMPHMSSVGSKRGFFRKLPPVERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPMLQRALLNLMLVVSGVVFFVNVGMVILSDLKMATSLLLLLFAAFMGLRASKVFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQEEHIKEALLAHSFLARRPGGAQGLPEETSKWLQSEVESWLLAQSGCDVAFNGPRALAHLQALTPSFGLFPPAELPQLDPLVLGTPEAWQATVPGGSYPSP", "length": 444, "header": "tr|A0A9J7H445-1|A0A9J7H445_CRIGR Computationally mapped isoform of Transmembrane protein 143 isoform X6 OS=Cricetulus griseus OX=10029 GN=Tmem143 PE=4 SV=1 CANONICAL=A0A9J7G6X9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HFP0", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HFP0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HFP0", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HFP0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751205", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751205", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6X9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 362, "end_pos": 364 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G332-1", "uniprot_ac": "A0A9J7G332", "uniprot_id": "A0A9J7G332_CRIGR", "mass": { "chemical_mass": 28205.0, "monoisotopic_mass": 28205.0 }, "refseq": { "ac": "XP_027272540", "name": "zinc finger FYVE domain-containing protein 21 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272540" }, "gene_names": [ { "name": "LOC113836160", "type": "recommended", "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ] }, { "name": "Zfyve21", "type": "recommended", "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ] }, { "name": "LOC113836160", "type": "synonym", "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ] }, { "name": "Zfyve21", "type": "synonym", "evidence": [ { "id": "XP_027272540", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272540" }, { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ] } ], "protein_names": [ { "name": "Zinc finger FYVE domain-containing protein 21 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger FYVE domain-containing protein 21 isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#names_and_taxonomy" } ] }, { "name": "zinc finger FYVE domain-containing protein 21 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027272540", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272540" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272540", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272540" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G332", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836160", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332", "locus": {} } ], "crossref": [ { "id": "cd15727", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15727", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113836160", "url": "https://www.ncbi.nlm.nih.gov/gene/113836160", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767357", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:113836160", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836160", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G332", "url": "https://www.orthodb.org/?gene=A0A9J7G332", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39490:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39490:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272540", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272540", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HMT9", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HMT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LQG7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LQG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G308", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G308", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G308-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G308-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G332", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G332-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGVEKDIHTYTSLLGSLLASEAGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 253, "header": "tr|A0A9J7G332-1|A0A9J7G332_CRIGR Isoform 1 of Zinc finger FYVE domain-containing protein 21 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HMT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#A0A3L7HMT9-1", "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGAGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 234, "header": "tr|A0A3L7HMT9-1|A0A9J7G332_CRIGR Computationally mapped isoform of Zinc finger FYVE domain-containing protein 21 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LQG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#A0A8C2LQG7-1", "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGEKDIHTYTSLLGSLLASEAGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 252, "header": "tr|A0A8C2LQG7-1|A0A9J7G332_CRIGR Computationally mapped isoform of Zinc finger FYVE domain-containing protein 21 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G308-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#A0A9J7G308-1", "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGVEKDIHTYTSLLGSLLASEGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 252, "header": "tr|A0A9J7G308-1|A0A9J7G308_CRIGR Computationally mapped isoform of Zinc finger FYVE domain-containing protein 21 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G332-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#A0A9J7G332-1", "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGVEKDIHTYTSLLGSLLASEAGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 253, "header": "tr|A0A9J7G332-1|A0A9J7G332_CRIGR Isoform 1 of Zinc finger FYVE domain-containing protein 21 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JT95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332/entry#A0A9J7JT95-1", "sequence": { "sequence": "MMCPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGVEKDIHTYTSLLGSLLASEAGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 209, "header": "tr|A0A9J7JT95-1|A0A9J7JT95_CRIGR Computationally mapped isoform of Zinc finger FYVE domain-containing protein 21 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC113836160 PE=4 SV=1 CANONICAL=A0A9J7G332-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HMT9", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMT9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HMT9", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMT9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767357", "resource": "KEGG Pathway" }, { "id": "cge:113836160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G332", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G332" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 99, "start_aa": "Asp", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZV7-1", "uniprot_ac": "A0A9J7FZV7", "uniprot_id": "A0A9J7FZV7_CRIGR", "mass": { "chemical_mass": 72167.0, "monoisotopic_mass": 72167.0 }, "refseq": { "ac": "XP_027269981", "name": "F-box only protein 21 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269981" }, "gene_names": [ { "name": "Fbxo21", "type": "recommended", "evidence": [ { "id": "A0A9J7FZV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7" } ] }, { "name": "Fbxo21", "type": "synonym", "evidence": [ { "id": "XP_027269981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269981" } ] } ], "protein_names": [ { "name": "F-box only protein 21 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027269981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269981" }, { "id": "A0A9J7FZV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269981", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269981" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbxo21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752874", "url": "https://www.ncbi.nlm.nih.gov/gene/100752874", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752874", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752874", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZV7", "url": "https://www.orthodb.org/?gene=A0A9J7FZV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31350", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31350", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31350:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31350:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269981", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269981", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HRG5", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HRG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVAGDSAMEVVPALAEEAATEATGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSGQVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE", "length": 627, "header": "tr|A0A9J7FZV7-1|A0A9J7FZV7_CRIGR Isoform 1 of F-box only protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fbxo21 PE=4 SV=1 CANONICAL=A0A9J7FZV7-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HRG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7/entry#A0A3L7HRG5-1", "sequence": { "sequence": "MAAVAGDSAMEVVPALAEEAATEATGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSGQVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE", "length": 620, "header": "tr|A0A3L7HRG5-1|A0A9J7FZV7_CRIGR Computationally mapped isoform of F-box only protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fbxo21 PE=4 SV=1 CANONICAL=A0A9J7FZV7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7/entry#A0A9J7FZV7-1", "sequence": { "sequence": "MAAVAGDSAMEVVPALAEEAATEATGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSGQVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE", "length": 627, "header": "tr|A0A9J7FZV7-1|A0A9J7FZV7_CRIGR Isoform 1 of F-box only protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fbxo21 PE=4 SV=1 CANONICAL=A0A9J7FZV7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HRG5", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRG5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HRG5", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRG5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752874", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752874", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FZV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZV7" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 76, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G167-1", "uniprot_ac": "A0A9J7G167", "uniprot_id": "A0A9J7G167_CRIGR", "mass": { "chemical_mass": 29860.0, "monoisotopic_mass": 29860.0 }, "refseq": { "ac": "XP_027270136", "name": "protein CDV3 homolog isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270136" }, "gene_names": [ { "name": "Cdv3", "type": "recommended", "evidence": [ { "id": "A0A9J7G167", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167" } ] }, { "name": "Cdv3", "type": "synonym", "evidence": [ { "id": "XP_027270136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270136" } ] } ], "protein_names": [ { "name": "Protein CDV3 homolog isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7G167", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#names_and_taxonomy" } ] }, { "name": "protein CDV3 homolog isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027270136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270136" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270136" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G167", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdv3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167", "locus": {} } ], "crossref": [ { "id": "A0A9J7G167", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G167", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767533", "url": "https://www.ncbi.nlm.nih.gov/gene/100767533", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767533", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767533", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G167", "url": "https://www.orthodb.org/?gene=A0A9J7G167", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16284", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16284", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16284:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16284:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15359", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15359", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270136", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LF66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LF66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LF66-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LF66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWV8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G167", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G167-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGARPGDGGSLGSGARSGDGGSLGSGVRSGDGGSLGSGARSGDGGTSRPGDGGSSGPAGKAVTKDEDEWKEFEQKEVDYSGLRVQAMQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRNRDKEMEKSFEVVRHKNRGREEVSKNQALKLQLDNQYAVLENQKYSHTQYS", "length": 282, "header": "tr|A0A9J7G167-1|A0A9J7G167_CRIGR Isoform 1 of Protein CDV3 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LF66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#A0A8C2LF66-1", "sequence": { "sequence": "MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGARPGDGGSLGSGARSGDGGSLGSGVRSGDGGSLGSGARSGDGGTSRPGDGGSSGPAGKAVTKDEDEWKEFEQKEVDYSGLRVQAMQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKNRGREEVSKNQALKLQLDNQYAVLENQKYSHTQYS", "length": 281, "header": "tr|A0A8C2LF66-1|A0A9J7G167_CRIGR Computationally mapped isoform of Protein CDV3 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#A0A9J7FWV8-1", "sequence": { "sequence": "MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGARPGDGGSLGSGARSGDGGSLGSGVRSGDGGSLGSGARSGDGGTSRPGDGGSSGPAGKAVTKDEDEWKEFEQKEVDYSGLRVQAMQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKY", "length": 233, "header": "tr|A0A9J7FWV8-1|A0A9J7FWV8_CRIGR Computationally mapped isoform of Protein CDV3 homolog isoform X8 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G167-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#A0A9J7G167-1", "sequence": { "sequence": "MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGARPGDGGSLGSGARSGDGGSLGSGVRSGDGGSLGSGARSGDGGTSRPGDGGSSGPAGKAVTKDEDEWKEFEQKEVDYSGLRVQAMQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRNRDKEMEKSFEVVRHKNRGREEVSKNQALKLQLDNQYAVLENQKYSHTQYS", "length": 282, "header": "tr|A0A9J7G167-1|A0A9J7G167_CRIGR Isoform 1 of Protein CDV3 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#A0A9J7JHB8-1", "sequence": { "sequence": "MQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRNRDKEMEKSFEVVRHKNRGREEVSKNQALKLQLDNQYAVLENQKYSHTQYS", "length": 155, "header": "tr|A0A9J7JHB8-1|A0A9J7JHB8_CRIGR Computationally mapped isoform of Protein CDV3 homolog isoform X9 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JM20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G167/entry#A0A9J7JM20-1", "sequence": { "sequence": "MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGARPGDGGSLGSGARSGDGGSLGSGVRSGDGGSLGSGARSGDGGTSRPGDGGSSGPAGKAVTKDEDEWKEFEQKEVDYSGLRVQAMQISEKEDDDNDKREDPGDNWEEGGGGSGVEKSSGPWNKTAPVQAPPAPVLVTETPEPAMPSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKYLK", "length": 235, "header": "tr|A0A9J7JM20-1|A0A9J7JM20_CRIGR Computationally mapped isoform of Protein CDV3 homolog isoform X7 OS=Cricetulus griseus OX=10029 GN=Cdv3 PE=3 SV=1 CANONICAL=A0A9J7G167-1" }, "locus": {} } ], "glycosylation": [], 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"monoisotopic_mass": 77667.0 }, "refseq": { "ac": "XP_007638585", "name": "sterile alpha motif domain-containing protein 15 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638585" }, "gene_names": [ { "name": "Samd15", "type": "recommended", "evidence": [ { "id": "A0A9J7G224", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224" } ] }, { "name": "Samd15", "type": "synonym", "evidence": [ { "id": "XP_007638585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638585" } ] } ], "protein_names": [ { "name": "Sterile alpha motif domain-containing protein 15 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G224", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224/entry#names_and_taxonomy" } ] }, { "name": "sterile alpha motif domain-containing protein 15 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638585" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613749.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638585", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638585" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G224", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Samd15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224", "locus": {} } ], "crossref": [ { "id": "A0A9J7G224", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G224", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09530", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09530", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763864", "url": "https://www.ncbi.nlm.nih.gov/gene/100763864", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763864", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763864", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMDETHE", "url": "https://omabrowser.org/oma/group/PMDETHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LKX5", "url": "https://www.orthodb.org/?gene=A0A8C2LKX5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G1D8", "url": "https://www.orthodb.org/?gene=A0A9J7G1D8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G224", "url": "https://www.orthodb.org/?gene=A0A9J7G224", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46829:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46829:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638585", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638585", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LKX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LKX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1D8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1D8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1D8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G224", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G224-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEVPEDYVSGPDESESLEPEGTKSPKLHDAKSDTAAEVTPEIDQEPEEDVFEEGKPGSAENVLPESARAPEEIPKETNMDLPSQIEAEITQELKLESSRGAGGEDLEVPGDEKHEPDLQPPGDVLTEPLLETDTQLPTETMVPEATSRETITKLPEKTGQKAPAQSPREGDTETGPEQNAPDFPSDKPRKSVEEEDLAPSKMTESEITAKTQGESAEEKSTEPTEVATPDLPGEMLRKSTEEAATEPPEEVRMKSIQQPEQTKPELPDTKPRLSIKDNFPELMKKLMLDLSDEEFKEPSEKASLELSEKATSKETRKSSVEEKISETLEEAALGLPKEIKPDVQGKTQEKSAEEKVPEPSEDRKPTGQKEKPGKSSEKSKSKGTLVESSKEKGPVFQGQTEAELPKKKLKISNEETGQMPPQMTKPEPTKEPKLANEPKPRETPTELPKEHRPETSKFKSPVGMDKEVSPGYHKKMPEKETSKTKNEFMVGSPEESVESGGDFESHKPFRETQPNVCEVITMVPSSESLDSVSEKVVDLPQGLGCKEPKVKKSARPQFEHLKWSPEEVAEWIGELGFPQYKECFTENFISGPKLIYVNCCNLPQMGITDFEDMKTISRHTRELLGIEEPLFSRSISLPYRDNIGLFLEQKGHSGVQSASLTFSEFVKAAGLPDCGLEIDDIEKDMSSLLDSCQEENEFTI", "length": 701, "header": "tr|A0A9J7G224-1|A0A9J7G224_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 15 isoform X1 OS=Cricetulus griseus OX=10029 GN=Samd15 PE=4 SV=1 CANONICAL=A0A9J7G224-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LKX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224/entry#A0A8C2LKX5-1", "sequence": { "sequence": "MAEVPEDYVSGPDESESLEPEGTKSPKLHDAKSDTAAEVTPEIDQEPEEDVFEEGKPGSAENVLPESARAPEEIPKETNMDLPSQIEAEITQELKLESSRGAGGEDLEVPGDEKHEPDLQPPGDVLTEPLLETDTQLPTETMVPEATSRETITKLPEKTGQKAPAQSPREGDTETGPEQNAPDFPSDKPRKSVEEEDLAPSKMTESEITAKTQGESAEEKSTEPTEVATPDLPGEMLRKSTEEAATEPPEEVRMKSIQQPEQTKPELPDTKPRLSIKDNFPELMKKLMLDLSDEEFKEPSEKASLELSEKATSKETRKSSVEEKISETLEEAALGLPKEIKPDVQGKTQEKSAEEKVPEPSEDRKPTGQKEKPGKSSEKSKSKGTLVESSKEKGPVFQGQTEAELPKKKLKISNEETGQMPPQMTKPEPTKEPKLANEPKPRETPTELPKEHRPETSKFKSPVGMDKEVSPGYHKKMPEKETSKTKNEFMVGSPEESVESGGDFESHKPFRETQPNVCEVITMVPSSESLDSVSEKVVDLPQGLGCKEPKVKKSARPQFEHLKWSPEEVAEWIGELGFPQYKECFTENFISGPKLIYVNCCNLPQMGITDFEDMKFTI", "length": 618, "header": "tr|A0A8C2LKX5-1|A0A9J7G224_CRIGR Computationally mapped isoform of Sterile alpha motif domain-containing protein 15 isoform X1 OS=Cricetulus griseus OX=10029 GN=Samd15 PE=4 SV=1 CANONICAL=A0A9J7G224-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224/entry#A0A9J7G1D8-1", "sequence": { "sequence": "MAEVPEDYVSGPDESESLEPEGTKSPKLHDAKSDTAAEVTPEIDQEPEEDVFEEGKPGSAENVLPESARAPEEIPKETNMDLPSQIEAEITQELKLESSRGAGGEDLEVPGDEKHEPDLQPPGDVLTEPLLETDTQLPTETMVPEATSRETITKLPEKTGQKAPAQSPREGDTETGPEQNAPDFPSDKPRKSVEEEDLAPSKMTESEITAKTQGESAEEKSTEPTEVATPDLPGEMLRKSTEEAATEPPEEVRMKSIQQPEQTKPELPDTKPRLSIKDNFPELMKKLMLDLSDEEFKEPSEKASLELSEKATSKETRKSSVEEKISETLEEAALGLPKEIKPDVQGKTQEKSAEEKVPEPSEDRKPTGQKEKPGKSSEKSKSKGTLVESSKEKGPVFQGQTEAELPKKKLKISNEETGQMPPQMTKPEPTKEPKLANEPKPRETPTELPKEHRPETSKFKSPVGMDKEVSPGYHKKMPEKETSKTKNEFMVGSPEESVESGGDFESHKPFRETQPNVCEVITMVPSSESLDSVSEKVVDLPQGLGCKEPKVKKSARPQFEHLKWSPEEVAEWIGELGFPQYKECFTENFISGPKLIYVNCCNLPQMGITDFEDMKK", "length": 616, "header": "tr|A0A9J7G1D8-1|A0A9J7G1D8_CRIGR Computationally mapped isoform of Sterile alpha motif domain-containing protein 15 isoform X3 OS=Cricetulus griseus OX=10029 GN=Samd15 PE=4 SV=1 CANONICAL=A0A9J7G224-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G224-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224/entry#A0A9J7G224-1", "sequence": { "sequence": "MAEVPEDYVSGPDESESLEPEGTKSPKLHDAKSDTAAEVTPEIDQEPEEDVFEEGKPGSAENVLPESARAPEEIPKETNMDLPSQIEAEITQELKLESSRGAGGEDLEVPGDEKHEPDLQPPGDVLTEPLLETDTQLPTETMVPEATSRETITKLPEKTGQKAPAQSPREGDTETGPEQNAPDFPSDKPRKSVEEEDLAPSKMTESEITAKTQGESAEEKSTEPTEVATPDLPGEMLRKSTEEAATEPPEEVRMKSIQQPEQTKPELPDTKPRLSIKDNFPELMKKLMLDLSDEEFKEPSEKASLELSEKATSKETRKSSVEEKISETLEEAALGLPKEIKPDVQGKTQEKSAEEKVPEPSEDRKPTGQKEKPGKSSEKSKSKGTLVESSKEKGPVFQGQTEAELPKKKLKISNEETGQMPPQMTKPEPTKEPKLANEPKPRETPTELPKEHRPETSKFKSPVGMDKEVSPGYHKKMPEKETSKTKNEFMVGSPEESVESGGDFESHKPFRETQPNVCEVITMVPSSESLDSVSEKVVDLPQGLGCKEPKVKKSARPQFEHLKWSPEEVAEWIGELGFPQYKECFTENFISGPKLIYVNCCNLPQMGITDFEDMKTISRHTRELLGIEEPLFSRSISLPYRDNIGLFLEQKGHSGVQSASLTFSEFVKAAGLPDCGLEIDDIEKDMSSLLDSCQEENEFTI", "length": 701, "header": "tr|A0A9J7G224-1|A0A9J7G224_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 15 isoform X1 OS=Cricetulus griseus OX=10029 GN=Samd15 PE=4 SV=1 CANONICAL=A0A9J7G224-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKX5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKX5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763864", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763864", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F6XZJ7-1", "protein_name": "Sterile alpha motif domain-containing protein 15", "gene_name": "Samd15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEVSGDYNSDSDESLSLQPKRTKSGKLHNANADTLFEVSSKLSPNTDRDPGNVGNVPLEPTRTRKGDLVPVGKNHEVPDLQRQDVSVGVFKGPPTRTGTQLPTKIDPEQKTPDIRSEKLRKSVEEEALPPSKMTKSEKKQKESIKEKSTEPYEVTKPKFPDRKLRKSTEEADLKPHFKSTEQSGTEQPEQTKFPDKKLRQSTKKKVSGPLEDFEEESRRPIDEASLELSQKRPLKASKKAQKSSFDEKFPEMLEQITVELLDDQEETQEESIKEKVPEPLGDRKPSAQKHKLRKSSERSKLKDTLIEPSKDKDPGLQTQTEFPKEKLIKTTEKTGDKPQQITDPDIQEKSQPEPTEKNLELPNKPKPEEERDLPKEDKPESSKPNYPAGKDKLALPAKIKTEFIVGSPRESVESFSTLYETQEFLKDLQTDMNELFPIVDASESQTELRDSTVLPQEVELLGRKETKPSLTPEFEHLTWSPERVAEWISDLGFPQYKECFTENFINGQKLIHVNCSNLPQMGITDFEDMKAISYHTRVLLGIEEPLFSRSISLPYRDNKGLFFEQKGHSGVKSDSLTLAKFVEAAGLQEYNPEIKAEEKKEDALPENSLEENEELYEAT", "length": 620 }, "evidence": [ { "id": "A0A9J7G224", "url": "https://omabrowser.org/oma/group/A0A9J7G224/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P1V8-1", "protein_name": "Sterile alpha motif domain-containing protein 15", "gene_name": "SAMD15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEVPEDYDSGPDEDGELEPERPELPGLHKLYENAEPDTMAKADSKLPAEIYQEPQPETEEEDFKEGEPDSAKNVQLKPGGTSQEGIAKESKRDVPSETEPGIHQEVKSETSREMGEFFKDLEAPMDETHKESDLEPPEEAKPNVTEDVFLESAMETDPDPVPPTETMSEVSGATVRERNLELLEEETEPGVPEESLRVQHEETGLEPPEQTKQDFPSEKLGESLEETDLQPPKMTKPETPEETQRESTEKKRTEPPEQARLEFLEKEPRKSSEEAGLEPPEETQPEVPEEMQRKATEEKGTELPERTKPDFPDHKPRKSTDENVPEPLEEIKLEFPEEESRKTNEETILEQSEMMKPESPEEIRKSNEKKNPQPPEETGPVLPQEINPQVEEKTQTKPTEKILELPDETKPRETHVEFSKEDRPEPIKSKYSVGNDELEHREPKRGKLSLSDKFRKEYYALGSLRESEESIGTHYEFLQPLQKLLNVSEECSYSDPSESQTELSEFVHEKEVVDLSQELKERVSEDDETQPEKGTELQFEHLNWDPEEVAEWISQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEFVKAAGLQDYAPEITAPEENEELPCTEP", "length": 674 }, "evidence": [ { "id": "A0A9J7G224", "url": "https://omabrowser.org/oma/group/A0A9J7G224/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G224", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G224" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 627, "start_aa": "Trp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G5U7-1", "uniprot_ac": "A0A9J7G5U7", "uniprot_id": "A0A9J7G5U7_CRIGR", "mass": { "chemical_mass": 46504.0, "monoisotopic_mass": 46504.0 }, "refseq": { "ac": "XP_016835450", "name": "mirror-image polydactyly gene 1 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835450" }, "gene_names": [ { "name": "Mipol1", "type": "recommended", "evidence": [ { "id": "A0A9J7G5U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7" } ] }, { "name": "Mipol1", "type": "synonym", "evidence": [ { "id": "XP_016835450", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835450" } ] } ], "protein_names": [ { "name": "Mirror-image polydactyly gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G5U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7/entry#names_and_taxonomy" } ] }, { "name": "mirror-image polydactyly gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016835450", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835450" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615010.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835450", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835450" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mipol1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5U7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5U7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770377", "url": "https://www.ncbi.nlm.nih.gov/gene/100770377", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770377", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770377", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETIRVYY", "url": "https://omabrowser.org/oma/group/ETIRVYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LUS1", "url": "https://www.orthodb.org/?gene=A0A8C2LUS1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G5U7", "url": "https://www.orthodb.org/?gene=A0A9J7G5U7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G8A5", "url": "https://www.orthodb.org/?gene=A0A9J7G8A5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22089", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22089", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22089:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22089:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27918", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27918", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835450", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835450", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LUS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LUS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7R0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7R0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSEENMHLLDKEVTSEDLKLPGNNSSNLQAIGPYPDEGASTKCSIMECEKNDMNYESGTPHQVSPDLNKEITVDCLQKELEILRTSNKKLQEKLTKEDKEKRKLKLKLELHEKAAEAEIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAVARVKHMEMSLKMLENINPEENDMTLQELLSRINNADTGLAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLHQELHRLKEQKQTSANNMRHPTAENNQERALKAKLLSMKQARETAVEQYKRLEEEIQTLRVYYSLHKSLSQEENLKDQFNHALSTYEEALKNREHVVSITQQQNEELAAQLEQALTQQANMELQLQCAVEVSQAANEKVQNSPLVTLRGPNLSQSDGRGAVQEQE", "length": 406, "header": "tr|A0A9J7G5U7-1|A0A9J7G5U7_CRIGR Isoform 1 of Mirror-image polydactyly gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Mipol1 PE=4 SV=1 CANONICAL=A0A9J7G5U7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LUS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7/entry#A0A8C2LUS1-1", "sequence": { "sequence": "MNSEENMHLLDKEVTSEDLKLPGNNSSNLQAIGPYPDEGASTKCSIMECEKNDMNYESGTPHQVSPDLNKEITVDCLQKELEILRTSNKKLQEKLTKEDKEKRKLKLKLELHEKAAEAEIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAVARVKHMEMSLKMLENINPEENDMTLQELLSRINNADTGLAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLHQELHRLKEQKQTSANNMRHPTAENNQERALKAKLLSMKQARETAVEQYKRLEEEIQTLRVYYSLHKSLSQEENLKDQFNHALSTYEEALKNREHVVSITQQQNEELAAQLEQALTQQANMELQLQCAVEVSQAANEKVQKLERLVDVLRKKVGTGAVRTVI", "length": 403, "header": "tr|A0A8C2LUS1-1|A0A9J7G5U7_CRIGR Computationally mapped isoform of Mirror-image polydactyly gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Mipol1 PE=4 SV=1 CANONICAL=A0A9J7G5U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7/entry#A0A9J7G5U7-1", "sequence": { "sequence": "MNSEENMHLLDKEVTSEDLKLPGNNSSNLQAIGPYPDEGASTKCSIMECEKNDMNYESGTPHQVSPDLNKEITVDCLQKELEILRTSNKKLQEKLTKEDKEKRKLKLKLELHEKAAEAEIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAVARVKHMEMSLKMLENINPEENDMTLQELLSRINNADTGLAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLHQELHRLKEQKQTSANNMRHPTAENNQERALKAKLLSMKQARETAVEQYKRLEEEIQTLRVYYSLHKSLSQEENLKDQFNHALSTYEEALKNREHVVSITQQQNEELAAQLEQALTQQANMELQLQCAVEVSQAANEKVQNSPLVTLRGPNLSQSDGRGAVQEQE", "length": 406, "header": "tr|A0A9J7G5U7-1|A0A9J7G5U7_CRIGR Isoform 1 of Mirror-image polydactyly gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Mipol1 PE=4 SV=1 CANONICAL=A0A9J7G5U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7/entry#A0A9J7G8A5-1", "sequence": { "sequence": "MNSEENMHLLDKEVTSEDLKLPGNNSSNLQAIGPYPDEGASTKCSIMECEKNDMNYESGTPHQVSPDLNKEITVDCLQKELEILRTSNKKLQEKLTKEDKEKRKLKLKLELHEKAAEAEIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAVARVKHMEMSLKMLENINPEENDMTLQELLSRINNADTGLAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLHQELHRLKEQKQTSANNMRHPTAENNQERALKAKLLSMKQARETAVEQYKRLEEEIQTLRVYYSLHKSLSQEENLKDQFNHALSTYEEALKNREHVVSITQQQNEELAAQLEQALTQQANMELQLQCAVEVSQAANEKVQNFLFQIEEIPQ", "length": 392, "header": "tr|A0A9J7G8A5-1|A0A9J7G8A5_CRIGR Computationally mapped isoform of Mirror-image polydactyly gene 1 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Mipol1 PE=4 SV=1 CANONICAL=A0A9J7G5U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7/entry#A0A9J7K7R0-1", "sequence": { "sequence": "MNSEENMHLLDKEVTSEDLKLPGNNSSNLQAIGPYPDEGASTKCSIMECEKNDMNYESGTPHQVSPDLNKEITVDCLQKELEILRTSNKKLQEKLTKEDKEKRKLKLKLELHEKAAEAEIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAVARVKHMEMSLKMLENINPEENDMTLQELLSRINNADTGLAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLHQELHRLKEQKQTSANNMRHPTAENNQERALKAKLLSMKQARETAVEQYKRLEEEIQTLRVYYSLHKSLSQEENLKDQFNHALSTYEEALKNREHVVSITQQQNEELAAQLEQALTQQANMELQLQCAVEVSQAANEKVQNDFYCVPHQY", "length": 391, "header": "tr|A0A9J7K7R0-1|A0A9J7K7R0_CRIGR Computationally mapped isoform of Mirror-image polydactyly gene 1 protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Mipol1 PE=4 SV=1 CANONICAL=A0A9J7G5U7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LUS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUS1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LUS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LUS1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770377", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770377", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LSF5-1", "protein_name": "Mirror-image polydactyly 1", "gene_name": "MIPOL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAIRSSILPSEPYGQRSLPQILAQKPETLPEQTRTEVQMEDWSKDITHSYLEQETTGRNKNTQPDEQLPVNSKGSMHQKSNELVNEATYESTELPEQRSRNFQVVSPHPGDETAHCTAGKSNIMDHRSNDLHCECTNPCQVTSDFSKEETIALLLKELNILKASNKKLQEKLSKEDKEHRKLKLKLELQEKATEAQIAEKTAALVEEVYLAQKERDEAIMSRLQLANEERDEAIARAKHMEMSLKLLENINPEENDMTLQELLNRINNADTGVAIQKNGAIIVDRIYKTKECKKRITAEEMNAVIEERDAALSQCKRLEQELHHLKEQKQTSANNMRHLTAENNQERALKAKLLAMQQARETAVQQYKKLEEEIQTLRVYYSLHKSLSQEENLKDQFNLTLSTYEEALKNRENIVSITQQQNEELATQLQQALTDRANMELELQHAVEASRTANDKVQKLERLVDVLRKKVGTGTMRTVI", "length": 480 }, "evidence": [ { "id": "A0A9J7G5U7", "url": "https://omabrowser.org/oma/group/A0A9J7G5U7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XQM0-1", "protein_name": "Mirror-image polydactyly 1", "gene_name": "MIPOL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDKHALDLYRVLEIHFCEFTCVISRETCILGQKREDFGAEFQFHPNSSKKTDFFIQAEDEALKLSDLSVTSQGRPPNMCAQFSSSPGESSAVERRGKILPECISSWEDATGFGGKTETSFLLKELDTLRAKNKKLQDELLEKDKELKTIKLDLELQERATEAKIAEKIAALVEEVYSAQRERDKAVMARLRLANEERDEAFLRVRRLEESLKELENINPEENDMTLQELLNRINNADTGIDILKNGAIILNRIHRTKERKKKIIAEEMNAVIEERDAALSQCKRLEQELHHLKEQNQTSANNTRHLTAENNQERALKTELIALQQEKEATLQQCRKLEEEIQRLRIHYSLHKPLSQGVSLKDWLRCAFSTSEGGLKDREDVVTITYGQLEDLAAQLQQAQSEQQDTKLKLQKALEALKEANEKVQKLERLVDVLRKKVGAGTIRTVI", "length": 447 }, "evidence": [ { "id": "A0A9J7G5U7", "url": "https://omabrowser.org/oma/group/A0A9J7G5U7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58HM66-1", "protein_name": "Mirror-image polydactyly gene 1 protein isoform X1", "gene_name": "mipol1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNIRSMARDVQCALQRAKHKISSLENELSIKESCSESEEELHQLAWMHKQELKDSLVDMYKANPKVNEELKQRLPSPVKHHCSETTPQLGSTFGETTSASSQCQSISKSLEEKLLQVSKSPRSREEVLPKPPPPPPVPVPAPAEVRIMEEERRAQQKETAQQEQDINETASSPVHTPHISRTSSALLRHSHEDQGSSKVIGDSKKQVPVLDKEKNIAFLLKELDSLRELNKKLQDKLALKEKELETKLLDSQLQETEMEARANERAAVLVEEIYKAQRERDQAVMARLRLANEERDEALLRAKKLQEATLELENIKPEESDVDLEELLNRVNSAESALAIEQSGAAIIEQIQRARERRSQITSEEMKTVIQERDAALTRCKRLEQELLHIKEPSNNSANSTRHSTTQSTRERSSKLDLDLQEAQRERDKALLLSHSLQEELQTLRSVLQHQADESSPDSSSTFNQSQTEIQPLLYRLQQLTSEHQNAQTQLCLAQDREREANEKAQRLERLVEVLRKKVGTGSVRKVI", "length": 528 }, "evidence": [ { "id": "A0A9J7G5U7", "url": "https://omabrowser.org/oma/group/A0A9J7G5U7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1LUS3-1", "protein_name": "Mirror-image polydactyly 1", "gene_name": "Mipol1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKQTRYDLCLVQLTSVGSADAPADEQLTMSSEQNMHELGNEVTSQDLVLPGRKSSNCQVLRPCPDEVLSATCSVECGKNYESVIYHQVISDLNKETSVAYLQKELEILRANNKKLQEKLAKEDKEKRKLKLQLDLHEKAAEAAIAERTAALVEEVYFAQRERDEAIMCRLQLALEERDEAIARMKHMEMSLKMLENINPEENDMTLQELLNRINNADTGIAIQKDGAVIVDRIYKTKECKKRITAEEMSAVIEERDAALSQCKRLHQELHRLKEQNQTSANNTRHPTAENNQERALKAKLLSMQQARETAIEQYKRLEEEIQTLRVYYSLHKSLSQEETLKDQFNHALSIYEDALKNRESVVSITQQQNEELATQLQQALTEHADMELQLQCAVEVSRAASEKVQKHTTCSSIFLVNAWQLKYKAHTVPWLMLERLVDVLRKKVGTGTVRTVI", "length": 453 }, "evidence": [ { "id": "A0A9J7G5U7", "url": "https://omabrowser.org/oma/group/A0A9J7G5U7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8TD10-1", "protein_name": "Mirror-image polydactyly gene 1 protein", "gene_name": "MIPOL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENWSKDITHSYLEQETTGINKSTQPDEQLTMNSEKSMHRKSTELVNEITCENTEWPGQRSTNFQIISSYPDDESVYCTTEKYNVMEHRHNDMHYECMTPCQVTSDSDKEKTIAFLLKELDILRTSNKKLQQKLAKEDKEQRKLKFKLELQEKETEAKIAEKTAALVEEVYFAQKERDEAVMSRLQLAIEERDEAIARAKHMEMSLKVLENINPEENDMTLQELLNRINNADTGIAIQKNGAIIVDRIYKTKECKMRITAEEMSALIEERDAALSKCKRLEQELHHVKEQNQTSANNMRHLTAENNQERALKAKLLSMQQARETAVQQYKKLEEEIQTLRVYYSLHKSLSQEENLKDQFNYTLSTYEEALKNRENIVSITQQQNEELATQLQQALTERANMELQLQHAREASQVANEKVQKLERLVDVLRKKVGTGTMRTVI", "length": 442 }, "evidence": [ { "id": "A0A9J7G5U7", "url": "https://omabrowser.org/oma/group/A0A9J7G5U7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027272819.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272819", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272819" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atxn7l1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4R8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4R8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758796", "url": "https://www.ncbi.nlm.nih.gov/gene/100758796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758796", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758796", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G4R8", "url": "https://www.orthodb.org/?gene=A0A9J7G4R8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15117:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15117:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272819", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272819", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G084", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G084", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G084-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G084-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2C4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNU4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVGGSLARVPALPWGGVEMEGCRRADLVPTKPPESLGDTARWVPGTKGGRDTQRVKLWVLQRRLRERPPLLLPGVAPVAGLLAGQGGVAQHPGSRRPGRSELTALLLASAGTRTALRSASPTGALSSAPRTPRLSGAPRGRAQHSRAGPGRAQRAPPPASCLPPPPPPSSLSQSTQCRNVPKMTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQKNTSRMGRIRTLP", "length": 1114, "header": "tr|A0A9J7G4R8-1|A0A9J7G4R8_CRIGR Isoform 1 of Ataxin-7-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A8C2M7Q6-1", "sequence": { "sequence": "MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDSKRNASISWSGAESRQALEQRHV", "length": 146, "header": "tr|A0A8C2M7Q6-1|A0A9J7G4R8_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G084-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7G084-1", "sequence": { "sequence": "MHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQKNTSRMGRIRTLP", "length": 870, "header": "tr|A0A9J7G084-1|A0A9J7G084_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X12 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7G0E8-1", "sequence": { "sequence": "MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQNTSRMGRIRTLP", "length": 953, "header": "tr|A0A9J7G0E8-1|A0A9J7G0E8_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7G0G7-1", "sequence": { "sequence": "MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQNTSRMGRIRTLP", "length": 851, "header": "tr|A0A9J7G0G7-1|A0A9J7G0G7_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7G2C4-1", "sequence": { "sequence": "MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQKNTSRMGRIRTLP", "length": 954, "header": "tr|A0A9J7G2C4-1|A0A9J7G2C4_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7G4R8-1", "sequence": { "sequence": "MAVGGSLARVPALPWGGVEMEGCRRADLVPTKPPESLGDTARWVPGTKGGRDTQRVKLWVLQRRLRERPPLLLPGVAPVAGLLAGQGGVAQHPGSRRPGRSELTALLLASAGTRTALRSASPTGALSSAPRTPRLSGAPRGRAQHSRAGPGRAQRAPPPASCLPPPPPPSSLSQSTQCRNVPKMTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQKNTSRMGRIRTLP", "length": 1114, "header": "tr|A0A9J7G4R8-1|A0A9J7G4R8_CRIGR Isoform 1 of Ataxin-7-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7GWK3-1", "sequence": { "sequence": "MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLGKPWSSWIDAAKLHCFDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQLDNLYAFFCIHVPTVNNADNLCRK", "length": 863, "header": "tr|A0A9J7GWK3-1|A0A9J7GWK3_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X14 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7GXR7-1", "sequence": { "sequence": "MSAAQDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHSSMCRPSPSPASPASNSRTSLAQAKSKACLSGHNAVSSTSKPFKTPKDNLLTSSSKQHTVFSTKGPRDKPCVPVPVVSLEKIPNLVKADGANVKMSSTTTTTTTSSSSAVSTPPLIKPTLISKSVPPSPEKILNGKGILSATIDKKHQNGTKTSNKPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGLVPDALQGTSGSTVAEPKVPSPPKSRPLNSVLPRPSSANSISSSTSSNHSGYTPEPPLPPAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLESVAPRCPLNLAAQTPGPDGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLSLHQETPTQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSSSHKPSKTKTSKSSKVKDPSAHSDESPSNKKRKPQSSTSSSLSFQASFSSPLSGPHKKNCVLNASSSLNSYQASPPYNSLSVHNSNNGVSPHSAKLEPSGRTSLPSSPMDIVRQVGAVGGGSGSCPLSVPSLALHAGDLSLASHNAVCSLPLSFDKSEGKKRKSSSPSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQKNTSRMGRIRTLP", "length": 876, "header": "tr|A0A9J7GXR7-1|A0A9J7GXR7_CRIGR Computationally mapped isoform of Ataxin-7-like protein 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4R8/entry#A0A9J7JNU4-1", "sequence": { "sequence": 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griseus OX=10029 GN=Atxn7l1 PE=4 SV=1 CANONICAL=A0A9J7G4R8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027268223" } ] } ], "protein_names": [ { "name": "Transcription cofactor vestigial-like protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FWA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWA3/entry#names_and_taxonomy" } ] }, { "name": "transcription cofactor vestigial-like protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268223", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268223" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268223" } ] }, { "annotation": "May act as a specific coactivator for the mammalian TEFs.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA54#function" }, { "database": "UniProtKB", "id": "ARBA00002229", "url": "https://www.uniprot.org/uniprotkb/ARBA00002229#function" }, { "database": "UniProtKB", "id": "A0A9J7FU37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU37#function" }, { "database": "UniProtKB", "id": "A0A9J7FUI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUI4#function" }, { "database": "UniProtKB", "id": "A0A9J7FWA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWA3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": 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"header": "tr|A0A9J7FU37-1|A0A9J7FWA3_CRIGR Computationally mapped isoform of Transcription cofactor vestigial-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vgll3 PE=3 SV=1 CANONICAL=A0A9J7FWA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWA3/entry#A0A9J7FUI4-1", "sequence": { "sequence": "MQDSLEVTLPSKQEEEEEEEDEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQASTLHPESAISKSKMGLTPLWRDSSALSSQRSNFPASFWTSSYQPPPAPCLGGVHPDFQVTAPHGTFATADPNSWPGHGLHQTGPAPPPTASESWHYPLASQVSPSYSHMHDVYMRHHHPHAHMHHRHHHHHHHPTAGSALDPAYGPLLMPSVRTARIPAPQCDITKTDPTTVTTATSAWAGAFHGTVDIMPSVGFDTGLQHQDKSKESAWY", "length": 277, "header": "tr|A0A9J7FUI4-1|A0A9J7FWA3_CRIGR Computationally mapped isoform of Transcription cofactor vestigial-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vgll3 PE=3 SV=1 CANONICAL=A0A9J7FWA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWA3/entry#A0A9J7FWA3-1", "sequence": { "sequence": "MSCAEVMYHPQPYGAPQYLPNPVAAATCPTACYHPAPQPGQQKKLAVYSKMQDSLEVTLPSKQEEEEEEEDEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQASTLHPESAISKSKMGLTPLWRDSSALSSQRSNFPASFWTSSYQPPPAPCLGGVHPDFQVTAPHGTFATADPNSWPGHGLHQTGPAPPPTASESWHYPLASQVSPSYSHMHDVYMRHHHPHAHMHHRHHHHHHHPTAGSALDPAYGPLLMPSVRTARIPAPQCDITKTDPTTVTTATSAWAGAFHGTVDIMPSVGFDTGLQHQDKSKESAWY", "length": 327, "header": "tr|A0A9J7FWA3-1|A0A9J7FWA3_CRIGR Isoform 1 of Transcription cofactor vestigial-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vgll3 PE=3 SV=1 CANONICAL=A0A9J7FWA3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 205, "start_aa": "Thr", "end_pos": 205, "end_aa": "Thr", "residue": "Thr", 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"https://www.ebi.ac.uk/interpro/entry/IPR000357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773668", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773668", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3W9", "url": "https://www.orthodb.org/?gene=A0A9J7G3W9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JU35", "url": "https://www.orthodb.org/?gene=A0A9J7JU35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007651147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651147", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMV6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G604", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G604", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G604-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G604-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7B3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEIPLYFVDLQDDLDDYGFEDCGPDCDNGKVTAFLDIPGHDKLPLLTRLEKRAFSEDVFSRQIVARGLLDVFRDVNGSDKDTLAVMEVAVRLSEDAEPTVRTELMEQIPPIVTFLRESRLDFPVVVSQHLVPVIARYLADVDKQVRKSSQEVLLALLEQDLIAQCDIEGKVCPVLLERSGPDCDDECRAEAMSGPSWTISFPSAAAPLLTCAGDAVCLTLSVNYSSELQTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 999, "header": "tr|A0A9J7G3W9-1|A0A9J7G3W9_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9/entry#A0A8C2MMV6-1", "sequence": { "sequence": "MAEIPLYFVDLQDDLDDYGFEDCGPDCDNGKVTAFLDIPGHDKLPLLTRLEKRAFSEDVFSRQIVARGLLDVFRDVNGSDKDTLAVMEVAVRLSEDAEPTVRTELMEQIPPIVTFLRESRLDFPVVVSQHLVPVIARYLADVDKQVRKSSQEVLLALLEQDLIAQCDIEGKVCPVLLERSGPDCDDECRAEAMSTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 963, "header": "tr|A0A8C2MMV6-1|A0A9J7G3W9_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9/entry#A0A9J7G3W9-1", "sequence": { "sequence": "MAEIPLYFVDLQDDLDDYGFEDCGPDCDNGKVTAFLDIPGHDKLPLLTRLEKRAFSEDVFSRQIVARGLLDVFRDVNGSDKDTLAVMEVAVRLSEDAEPTVRTELMEQIPPIVTFLRESRLDFPVVVSQHLVPVIARYLADVDKQVRKSSQEVLLALLEQDLIAQCDIEGKVCPVLLERSGPDCDDECRAEAMSGPSWTISFPSAAAPLLTCAGDAVCLTLSVNYSSELQTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 999, "header": "tr|A0A9J7G3W9-1|A0A9J7G3W9_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G604-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9/entry#A0A9J7G604-1", "sequence": { "sequence": "MSGPSWTISFPSAAAPLLTCAGDAVCLTLSVNYSSELQTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 807, "header": "tr|A0A9J7G604-1|A0A9J7G604_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G7B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9/entry#A0A9J7G7B3-1", "sequence": { "sequence": "MAEIPLYFVDLQDDLDDYGFEDCGPDCDNGKVTAFLDIPGHDKLPLLTRLEKRAFSEDVFSRQIVARGLLDVFRDVNGSDKDTLAVMEVAVRLSEDAEPTVRTELMEQIPPIVTFLRESRLDFPVVVSQHLVPVIARYLADVDKQTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 914, "header": "tr|A0A9J7G7B3-1|A0A9J7G7B3_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JU35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9/entry#A0A9J7JU35-1", "sequence": { "sequence": "MEVAVRLSEDAEPTVRTELMEQIPPIVTFLRESRLDFPVVVSQHLVPVIARYLADVDKQVRKSSQEVLLALLEQDLIAQCDIEGKVCPVLLERSGPDCDDECRAEAMSGPSWTISFPSAAAPLLTCAGDAVCLTLSVNYSSELQTICRMASMVPRNTFTSLLLPRFCELCADNKLFQVRKVCATHFGDICHAVRQEATEKFLIPTFFELCSDNMWGMRKACAECFMAVSYNTSPEVRRAQLSPLFIKLISDPCRWVRQAAFQSLGPFISTFANPSRAGLYIREDGTLSIRPPSQEVESDFASGPPSTHSASSLAGSKTPVHMEPDLLPECASVETSHLHDSSSSSHTTENRSGSPSSARAEMTVISAGNSSCPELPGVSGCPSDSHPEAGPGTPEAMFSTYLYWRAPLPDISEDVEVLLSEARPLEENHSGPEASCDSCVARSEIQKVLQSLQGHLLQDPDIQAQVQVLSAALRATQLGSTSEPESKQTEGLNAESVSDPSPASDNHILLSASSSQNELSVARILQSTDQTEPQNRASGHLGTEQGQEPTTLEENESKASGHLESEQRQEGTALENRAKVQDVIPQPLLDQFVSMTDPARAQTVDMDIAKHCAYSLPGVALTLGRQNWHCLKDTFETLASDGQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRVGVLKHLYDFLKLLHKDKRRAHLRQLQEFVVTDNSRNWRFRYELAEQLILIVDLYGPSDVHGYLRHVALKLCADKVAQVRWISFKLVVVILRKFYSHGASALGLSFIQELISRFRHCPKWVGRQAFACICQAVVSEDSVPVDQFVEHLLPSLLSLASDPVPNVRVLLAKALWQTLLEKAYFRNAGDHHLEVVEETLLALQSDPDQDVSFFASLEPKMQNAADTTVLEN", "length": 913, "header": "tr|A0A9J7JU35-1|A0A9J7JU35_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100773668 PE=4 SV=1 CANONICAL=A0A9J7G3W9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMV6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMV6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773668", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773668", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3W9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, "end_pos": 643, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 224, "end_pos": 226 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 436, "end_pos": 438 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 641, "end_pos": 643 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G384-1", "uniprot_ac": "A0A9J7G384", "uniprot_id": "A0A9J7G384_CRIGR", "mass": { "chemical_mass": 20813.0, "monoisotopic_mass": 20813.0 }, "refseq": { "ac": "XP_027240268", "name": "uncharacterized protein C20orf204 homolog isoform X1", "summary": "", "url": 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615430.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027240268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240268" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G384", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH20orf204", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384", "locus": {} } ], "crossref": [ { "id": "A0A9J7G384", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G384", "database": "AlphaFoldDB", "categories": [] }, { "id": "113830984", "url": "https://www.ncbi.nlm.nih.gov/gene/113830984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113830984", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830984", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VMRRHCW", "url": "https://omabrowser.org/oma/group/VMRRHCW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G384", "url": "https://www.orthodb.org/?gene=A0A9J7G384", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027240268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZX4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G384", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G384-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPLKPTVYVLPLLLAFLESALGWAGSQSCSVQEVLRHYQAVIFQDLQVAMQWAGLGAQHTEPGSRHHHFFQKNLTGAGGGQGQPGASCDAQKEHSILLSIESLGQTLLGSMGGVPHNALEKAAWTVAVRTKAVMHRHCRISNRQILQPKKRPVQQRPSRRRLLLRALYAVATCWKKLFALSAMATSEF", "length": 189, "header": "tr|A0A9J7G384-1|A0A9J7G384_CRIGR Isoform 1 of Uncharacterized protein C20orf204 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH20orf204 PE=4 SV=1 CANONICAL=A0A9J7G384-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384/entry#A0A8C2MZX4-1", "sequence": { "sequence": "MVPLKPTVYVLPLLLAFLESALGWAGSQSCSVQEVLRHYQAVIFQDLQVAMQWAGLGAQHTEPGSRHHHFFQKNLTGAGGGQGQPGASCDAQKEHSILLSIESLGQTLLGSMGGVPHNALEKAAWTVAVRTKAVMHRHCRISNRILQPKKRPVQQRPSRRRLLLRALYAVATCWKKLFALSAMATSEF", "length": 188, "header": "tr|A0A8C2MZX4-1|A0A9J7G384_CRIGR Computationally mapped isoform of Uncharacterized protein C20orf204 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH20orf204 PE=4 SV=1 CANONICAL=A0A9J7G384-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G384-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G384/entry#A0A9J7G384-1", "sequence": { "sequence": "MVPLKPTVYVLPLLLAFLESALGWAGSQSCSVQEVLRHYQAVIFQDLQVAMQWAGLGAQHTEPGSRHHHFFQKNLTGAGGGQGQPGASCDAQKEHSILLSIESLGQTLLGSMGGVPHNALEKAAWTVAVRTKAVMHRHCRISNRQILQPKKRPVQQRPSRRRLLLRALYAVATCWKKLFALSAMATSEF", "length": 189, "header": "tr|A0A9J7G384-1|A0A9J7G384_CRIGR Isoform 1 of Uncharacterized protein C20orf204 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH20orf204 PE=4 SV=1 CANONICAL=A0A9J7G384-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GTL2-1", "protein_name": "Uncharacterized protein C20orf204", "gene_name": "C20orf204", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVPPKPALWALLLALLGTAPSRAYSPACSVPDVLRHYRAIIFEDLQAAVKWGGAGAEKTRPGSRHFHFIQKNLTRPGSSGRRGRPRASCGAQKEHSILLSISSLGRTLRGAVAGGRRGALERAAWTVAVRTEAVMRRHCRTLRQRSRRPKMRPARRRGGRRQLLLRALDAVATCWEKLFALRAPASRDS", "length": 189 }, "evidence": [ { "id": "A0A9J7G384", "url": "https://omabrowser.org/oma/group/A0A9J7G384/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G945", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G945", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G945-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G945-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 422, "header": "tr|A0A9J7G6P3-1|A0A9J7G6P3_CRIGR Isoform 1 of RNA-binding motif, single-stranded-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3/entry#A0A8C2MZZ8-1", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 403, "header": "tr|A0A8C2MZZ8-1|A0A9J7G6P3_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3/entry#A0A9J7G4Q6-1", "sequence": { "sequence": "MKQYLHDNLTGTLNKGRKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 415, "header": "tr|A0A9J7G4Q6-1|A0A9J7G4Q6_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3/entry#A0A9J7G6P3-1", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 422, "header": "tr|A0A9J7G6P3-1|A0A9J7G6P3_CRIGR Isoform 1 of RNA-binding motif, single-stranded-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G945-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3/entry#A0A9J7G945-1", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 406, "header": "tr|A0A9J7G945-1|A0A9J7G945_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3/entry#A0A9J7JR23-1", "sequence": { "sequence": "MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 389, "header": "tr|A0A9J7JR23-1|A0A9J7JR23_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Rbms1 PE=4 SV=1 CANONICAL=A0A9J7G6P3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZZ8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZZ8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767838", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RPR6-1", "protein_name": "RNA binding motif single stranded interacting protein 1", "gene_name": "RBMS1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MIFPSSSGNPGGSSSCRTPYRKQQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 401 }, "evidence": [ { "id": "A0A9J7G6P3", "url": "https://omabrowser.org/oma/group/A0A9J7G6P3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P29558-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "RBMS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 406 }, "evidence": [ { "id": "A0A9J7G6P3", "url": "https://omabrowser.org/oma/group/A0A9J7G6P3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3ZBP3-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "RBMS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVTVETSNDHSPYTFQPNK", "length": 403 }, "evidence": [ { "id": "A0A9J7G6P3", "url": "https://omabrowser.org/oma/group/A0A9J7G6P3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PQP1-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "Rbms1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQQVTVETSNDHSPYTFPPNK", "length": 403 }, "evidence": [ { "id": "A0A9J7G6P3", "url": "https://omabrowser.org/oma/group/A0A9J7G6P3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91W59-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "Rbms1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFPPNK", "length": 403 }, "evidence": [ { "id": "A0A9J7G6P3", "url": "https://omabrowser.org/oma/group/A0A9J7G6P3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6P3" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 135, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 46, "end_pos": 48 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G1X6-1", "uniprot_ac": "A0A9J7G1X6", "uniprot_id": "A0A9J7G1X6_CRIGR", "mass": { "chemical_mass": 13930.0, "monoisotopic_mass": 13930.0 }, "refseq": { "ac": "XP_007643877", "name": "protein lin-52 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643877" }, "gene_names": [ { "name": "Lin52", "type": "recommended", "evidence": [ { "id": "A0A9J7G1X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1X6" } ] }, { "name": "Lin52", "type": "synonym", "evidence": [ { "id": "XP_007643877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643877" } ] } ], "protein_names": [ { "name": "Protein lin-52 homolog", "type": "recommended", "evidence": [ { "id": "A0A9J7G1X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1X6/entry#names_and_taxonomy" } ] }, { "name": "protein lin-52 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_007643877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643877" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614123.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643877", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643877" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1X6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lin52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1X6", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1X6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1X6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755280", "url": "https://www.ncbi.nlm.nih.gov/gene/100755280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018737", 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"https://www.uniprot.org/uniprotkb/A0A8C2M880", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M880-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M880-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIM9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3L9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRP8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPWGIAQAGPVPARRRKLLSPKVHPSLTQLAAPSPSQHECRVGATVAIVSPTAAAVGGHSLAVCPLLPPRQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEDPESLRYQNFYKGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 225, "header": "tr|A0A9J7G2B6-1|A0A9J7G2B6_CRIGR Isoform 1 of Linker for activation of T-cells family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M880-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A8C2M880-1", "sequence": { "sequence": "MNAELELLWPLSVPLLLLLGATAWLCVHCSRPGVKRNEKIYEQRNQQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEDPESLRYQNFYKGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 201, "header": "tr|A0A8C2M880-1|A0A8C2M880_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QIM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A8C2QIM9-1", "sequence": { "sequence": "MNAELELLWPLSVPLLLLLGATAWLCVHCSRPGVKRNEKIYEQRNQQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 189, "header": "tr|A0A8C2QIM9-1|A0A9J7G2B6_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A9J7G2B6-1", "sequence": { "sequence": "MPWGIAQAGPVPARRRKLLSPKVHPSLTQLAAPSPSQHECRVGATVAIVSPTAAAVGGHSLAVCPLLPPRQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEDPESLRYQNFYKGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 225, "header": "tr|A0A9J7G2B6-1|A0A9J7G2B6_CRIGR Isoform 1 of Linker for activation of T-cells family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A9J7G3L9-1", "sequence": { "sequence": "MNAELELLWPLSVPLLLLLGATAWLCVHCSRPVARPVWPGSLMDTASDKSSERKNKLLFSHLEDPESLRYQNFYKGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 173, "header": "tr|A0A9J7G3L9-1|A0A9J7G3L9_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A9J7GVK3-1", "sequence": { "sequence": "MNAELELLWPLSVPLLLLLGATAWLCVHCSRPVARPVWPGSLMDTASDKSSERKNKLLFSHLEGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 161, "header": "tr|A0A9J7GVK3-1|A0A9J7GVK3_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A9J7JRP8-1", "sequence": { "sequence": "MVRNPHSQLAAPSPSQHECRVGATVAIVSPTAAAVGGHSLAVCPLLPPRQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEDPESLRYQNFYKGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 204, "header": "tr|A0A9J7JRP8-1|A0A9J7JRP8_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6/entry#A0A9J7K7Q8-1", "sequence": { "sequence": "MPWGIAQAGPVPARRRKLLSPKVHPSLTQLAAPSPSQHECRVGATVAIVSPTAAAVGGHSLAVCPLLPPRQENEESFTVAQTYSLARPVWPGSLMDTASDKSSERKNKLLFSHLEGSRHDAAYVDPIPTDYYNWGCSQKPPEDDDSNSYENVLICKPTAPDSGGEESEDYQNSVCIREWRESRRTVGAQVSPSGSPDEEPDYVNGDVAAAEKV", "length": 213, "header": "tr|A0A9J7K7Q8-1|A0A9J7K7Q8_CRIGR Computationally mapped isoform of Linker for activation of T-cells family member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lat2 PE=4 SV=1 CANONICAL=A0A9J7G2B6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIM9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIM9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771985", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771985", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" }, { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "calcium-mediated signaling", "id": "GO:0019722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019722", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" }, { "name": "B cell activation", "id": "GO:0042113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042113", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" }, { "name": "B cell receptor signaling pathway", "id": "GO:0050853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050853", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SH2 domain binding", "id": "GO:0042169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042169", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 50536.0 }, "refseq": { "ac": "XP_007626439", "name": "arginine/serine-rich coiled-coil protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007626439" }, "gene_names": [ { "name": "Rsrc2", "type": "recommended", "evidence": [ { "id": "A0A9J7G0Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8" } ] }, { "name": "Rsrc2", "type": "synonym", "evidence": [ { "id": "XP_007626439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007626439" } ] } ], "protein_names": [ { "name": "Arginine/serine-rich coiled-coil protein 2", "type": "recommended", "evidence": [ { "id": "A0A9J7G0Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8/entry#names_and_taxonomy" } ] }, { "name": "arginine/serine-rich coiled-coil protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007626439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007626439" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613692.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007626439", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007626439" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rsrc2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8", "locus": {} } ], "crossref": [ { "id": "A0A9J7G0Q8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G0Q8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770513", "url": "https://www.ncbi.nlm.nih.gov/gene/100770513", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770513", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770513", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QKI2", "url": "https://www.orthodb.org/?gene=A0A8C2QKI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FW94", "url": "https://www.orthodb.org/?gene=A0A9J7FW94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G0Q8", "url": "https://www.orthodb.org/?gene=A0A9J7G0Q8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22426", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22426", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22426:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22426:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15477", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15477", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007626439", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007626439", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKI2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATDTERDGLAPEKTSPDREKKKEQSDVSISPRTSKHHYSRSRSRERKRKSDNEGRKHRSRSRSKEARRHESKDKSSKRHKSEEHNDKEHSSERGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSSMRGMDTV", "length": 433, "header": "tr|A0A9J7G0Q8-1|A0A9J7G0Q8_CRIGR Isoform 1 of Arginine/serine-rich coiled-coil protein 2 OS=Cricetulus griseus OX=10029 GN=Rsrc2 PE=3 SV=1 CANONICAL=A0A9J7G0Q8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8/entry#A0A8C2QKI2-1", "sequence": { "sequence": "MIRTNFLLKQARRHESKDKSSKRHKSEEHNDKEHSSERGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSSMRGMDTV", "length": 376, "header": "tr|A0A8C2QKI2-1|A0A9J7G0Q8_CRIGR Computationally mapped isoform of Arginine/serine-rich coiled-coil protein 2 OS=Cricetulus griseus OX=10029 GN=Rsrc2 PE=3 SV=1 CANONICAL=A0A9J7G0Q8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8/entry#A0A9J7FW94-1", "sequence": { "sequence": "MAATDTERDGLAPEKTSPDREKKKEQSDVSISPRTSKHHYSRSRSRERKRKSDNEGRKHRSRSRSKEARRHESKDKSSKRHKSEEHNDKEHSSERGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSSMRGMDTV", "length": 432, "header": "tr|A0A9J7FW94-1|A0A9J7FW94_CRIGR Computationally mapped isoform of Arginine/serine-rich coiled-coil protein 2 OS=Cricetulus griseus OX=10029 GN=Rsrc2 PE=3 SV=1 CANONICAL=A0A9J7G0Q8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8/entry#A0A9J7G0Q8-1", "sequence": { "sequence": "MAATDTERDGLAPEKTSPDREKKKEQSDVSISPRTSKHHYSRSRSRERKRKSDNEGRKHRSRSRSKEARRHESKDKSSKRHKSEEHNDKEHSSERGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSSMRGMDTV", "length": 433, "header": "tr|A0A9J7G0Q8-1|A0A9J7G0Q8_CRIGR Isoform 1 of Arginine/serine-rich coiled-coil protein 2 OS=Cricetulus griseus OX=10029 GN=Rsrc2 PE=3 SV=1 CANONICAL=A0A9J7G0Q8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKI2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKI2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKI2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKI2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770513", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770513", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G0Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q8" }, { "id": "PF15477", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15477" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small acidic protein-like", "eco_id": "ECO_0000259", "start_pos": 353, "end_pos": 422, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G326-1", "uniprot_ac": "A0A9J7G326", "uniprot_id": "A0A9J7G326_CRIGR", "mass": { "chemical_mass": 20775.0, "monoisotopic_mass": 20775.0 }, "refseq": { "ac": "XP_027274892", "name": "EF-hand calcium-binding domain-containing protein 11 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274892" }, "gene_names": [ { "name": "Efcab11", "type": "recommended", "evidence": [ { "id": "A0A9J7G326", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326" } ] }, { "name": "Efcab11", "type": "synonym", "evidence": [ { "id": "XP_027274892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274892" } ] } ], "protein_names": [ { "name": "EF-hand calcium-binding domain-containing protein 11 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027274892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274892" }, { "id": "A0A9J7G326", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274892", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274892" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G326", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Efcab11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326", "locus": {} } ], "crossref": [ { "id": "A0A9J7G326", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G326", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769192", "url": "https://www.ncbi.nlm.nih.gov/gene/100769192", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769192", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769192", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G326", "url": "https://www.orthodb.org/?gene=A0A9J7G326", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G342", "url": "https://www.orthodb.org/?gene=A0A9J7G342", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274892", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274892", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G326", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G326-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G342", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G342", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G342-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G342-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G524", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G524", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G524-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G524-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G699", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G699-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G699-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1C3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1C3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1C3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6I9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRQTNSRREAGFRGSSGHCETCRVEWPDLDVGGKAFQVEASRTALLHI", "length": 183, "header": "tr|A0A9J7G326-1|A0A9J7G326_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A8C2QKJ4-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFREADQDSDGHVSFRDFEYAMNYGQAK", "length": 162, "header": "tr|A0A8C2QKJ4-1|A0A9J7G326_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G326-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7G326-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRQTNSRREAGFRGSSGHCETCRVEWPDLDVGGKAFQVEASRTALLHI", "length": 183, "header": "tr|A0A9J7G326-1|A0A9J7G326_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G342-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7G342-1", "sequence": { "sequence": "MLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRQTNSRREAGFRGSSGHCETCRVEWPDLDVGGKAFQVEASRTALLHI", "length": 135, "header": "tr|A0A9J7G342-1|A0A9J7G342_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X3 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7G4Z2-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFSRPSSEVA", "length": 144, "header": "tr|A0A9J7G4Z2-1|A0A9J7G4Z2_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G524-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7G524-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRIYLSC", "length": 142, "header": "tr|A0A9J7G524-1|A0A9J7G524_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X8 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G699-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7G699-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRPSICGQNILS", "length": 147, "header": "tr|A0A9J7G699-1|A0A9J7G699_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X5 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7H1C3-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEVFKACDEDNKGHLSREDFKVAIVMLFGYKPSKIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFSKKRQKYK", "length": 144, "header": "tr|A0A9J7H1C3-1|A0A9J7H1C3_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X7 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326/entry#A0A9J7K6I9-1", "sequence": { "sequence": "MFPSVAGTRPRACEASASERRKWVEIEADSVMSSVNPNSSGISLEGFLDVVKRKKDAQLYRNEIRHLFTAFDVHYRGFLTLEDFKRAFSRVAPKLPERTVLEVFRQTNSRREAGFRGSSGHCETCRVEWPDLDVGGKAFQVEASRTALLHI", "length": 151, "header": "tr|A0A9J7K6I9-1|A0A9J7K6I9_CRIGR Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 isoform X4 OS=Cricetulus griseus OX=10029 GN=Efcab11 PE=4 SV=1 CANONICAL=A0A9J7G326-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKJ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKJ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769192", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769192", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G326", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G326", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G326" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 53, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXD8-1", "uniprot_ac": "A0A9J7FXD8", "uniprot_id": "A0A9J7FXD8_CRIGR", "mass": { "chemical_mass": 52230.0, "monoisotopic_mass": 52230.0 }, "refseq": { "ac": "XP_007638646", "name": "coiled-coil domain-containing protein 159 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638646" }, "gene_names": [ { "name": "Ccdc159", "type": "recommended", "evidence": [ { "id": "A0A9J7FXD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8" } ] }, { "name": "Ccdc159", "type": "synonym", "evidence": [ { "id": "XP_007638646", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638646" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 159 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FXD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 159 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638646", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638646" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638646", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638646" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc159", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769664", "url": "https://www.ncbi.nlm.nih.gov/gene/100769664", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769664", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769664", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FSY2", "url": "https://www.orthodb.org/?gene=A0A9J7FSY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FSY7", "url": "https://www.orthodb.org/?gene=A0A9J7FSY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FXD8", "url": "https://www.orthodb.org/?gene=A0A9J7FXD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JFP3", "url": "https://www.orthodb.org/?gene=A0A9J7JFP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JK54", "url": "https://www.orthodb.org/?gene=A0A9J7JK54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34533", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34533", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34533:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34533:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007638646", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638646", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPPSATLRFPAMVSPRDQNFFVTAGDWLRGPWWESMNRCDPLLAGLPWDSDYGVSYLSSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 456, "header": "tr|A0A9J7FXD8-1|A0A9J7FXD8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 159 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FSY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7FSY2-1", "sequence": { "sequence": "MCDPLLAGLPWDSDYGVSYLSSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 418, "header": "tr|A0A9J7FSY2-1|A0A9J7FXD8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 159 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7FSY7-1", "sequence": { "sequence": "MTPPSATLRFPAMVSPRDQNFFVTAGDWLRGPWWESMNRCDPLLAGLPWDSDYGVSYLSSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPA", "length": 439, "header": "tr|A0A9J7FSY7-1|A0A9J7FXD8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 159 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7FXD8-1", "sequence": { "sequence": "MTPPSATLRFPAMVSPRDQNFFVTAGDWLRGPWWESMNRCDPLLAGLPWDSDYGVSYLSSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 456, "header": "tr|A0A9J7FXD8-1|A0A9J7FXD8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 159 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7GVT2-1", "sequence": { "sequence": "MTPPSATLRFPAMVSPRDQNFFVTAGDWLRGPWWESMNRCDPLLAGLPWDSDYGVSYLSSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 450, "header": "tr|A0A9J7GVT2-1|A0A9J7GVT2_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 159 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7JFP3-1", "sequence": { "sequence": "MCSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 399, "header": "tr|A0A9J7JFP3-1|A0A9J7JFP3_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 159 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD8/entry#A0A9J7JK54-1", "sequence": { "sequence": "MTPPSATLRFPAMVSPRDQNFFVTAGDWLRGPWWESMNRCSPPPLSIPSWPAKEKRDRALDCMTRRSRTLEPEIVNAVSQQASKSVSWRQEWDLTSQPNEGTSCSNSDSDFYKEHNHDQDFVKRTHSTTKKSLEPCSSKVKGEHPLPVKNTMLIPDSQKFFQCELESLRTQLQAQTKAFEFLNHSVTMLEKESCLQQIKIQQLEEVWSPLSLQGEKEGRKRAEDQSQQELHGALAQGLQELQKTLRDSEELQQARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYEPCSYPEAEEVLAEGNCTWKDDLQKELSNIWSAVHSLQNSIDCLALSMGTRPRASCLKGHKGHLCLSSQYPSWDSDSDWETPFSKNGSYPPGTDPPQPLSNPYHLPPPL", "length": 437, "header": "tr|A0A9J7JK54-1|A0A9J7JK54_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 159 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccdc159 PE=4 SV=1 CANONICAL=A0A9J7FXD8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FSY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSY2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769664", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 202, "end_pos": 204 }, { "start_pos": 363, "end_pos": 365 }, { "start_pos": 433, "end_pos": 435 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FWI7-1", "uniprot_ac": "A0A9J7FWI7", "uniprot_id": "A0A9J7FWI7_CRIGR", "mass": { "chemical_mass": 63942.0, "monoisotopic_mass": 63942.0 }, "refseq": { "ac": "XP_027268414", "name": "nucleolus and neural progenitor protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268414" }, "gene_names": [ { "name": "Nepro", "type": "recommended", "evidence": [ { "id": "A0A9J7FWI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7" } ] }, { "name": "Nepro", "type": "synonym", "evidence": [ { "id": "XP_027268414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268414" } ] } ], "protein_names": [ { "name": "Nucleolus and neural progenitor protein isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FWI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7/entry#names_and_taxonomy" } ] }, { "name": "nucleolus and neural progenitor protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268414" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268414" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nepro", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWI7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWI7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773001", "url": "https://www.ncbi.nlm.nih.gov/gene/100773001", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027951", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027951", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773001", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773001", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FWI7", "url": "https://www.orthodb.org/?gene=A0A9J7FWI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34761", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34761", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34761:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34761:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268414", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FUR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAALRRGAEPWNRVRIPQAGSSSTLTVRDPSATLDICIAAVIKGCHLVTQSIKSKTLDAEVDVLCSVLYSNHNRMGRHKPHLALRQVEQCLKRLKNMNLEGSVEDLSQLLSANETQPGATENRVVPSQPVVEVVLMKVLGGCKLLLRLLDCCCKAFRLIVKHLGLQEFIILNLVMIGLVSRLWVLHKGLLRRLVSLYEPLFQLLQEVSRIHPMPYFKEYAFPSDVTDFLGPPYVELFKGKPPEAVATKGVTKLLNKLFTMKEQLPKVSEDTLDRISKTSEQMKNNAQSSMDLGQPVRMSKKTRKEKPSGFDVRALCTRLRNKATQETSREFKCSQSRLKTSKLSSQKLTRTLWASNIVQRIRVTKTFTQLSEEIQTAVMWCRSKKLKAQATYLGNKLLKSNRLRHVEAQGYSLPKKLQCMKTSLCNCLLRGSIISTSKCSPRQKRSKHKVLSRQRKPQRKLQSTLLKETQQEPEGTLKSTRDPSAKWSRSGGTVQRTDVCPNRKQVLRRLSKSVLKTKEPGFHGNLTAGSRNETGLWTNRQTHTHSVPQAAKEADDIDDIFALMGV", "length": 567, "header": "tr|A0A9J7FWI7-1|A0A9J7FWI7_CRIGR Isoform 1 of Nucleolus and neural progenitor protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Nepro PE=4 SV=1 CANONICAL=A0A9J7FWI7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FUR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7/entry#A0A9J7FUR7-1", "sequence": { "sequence": "MKVLGGCKLLLRLLDCCCKAFRLIVKHLGLQEFIILNLVMIGLVSRLWVLHKGLLRRLVSLYEPLFQLLQEVSRIHPMPYFKEYAFPSDVTDFLGPPYVELFKGKPPEAVATKGVTKLLNKLFTMKEQLPKVSEDTLDRISKTSEQMKNNAQSSMDLGQPVRMSKKTRKEKPSGFDVRALCTRLRNKATQETSREFKCSQSRLKTSKLSSQKLTRTLWASNIVQRIRVTKTFTQLSEEIQTAVMWCRSKKLKAQATYLGNKLLKSNRLRHVEAQGYSLPKKLQCMKTSLCNCLLRGSIISTSKCSPRQKRSKHKVLSRQRKPQRKLQSTLLKETQQEPEGTLKSTRDPSAKWSRSGGTVQRTDVCPNRKQVLRRLSKSVLKTKEPGFHGNLTAGSRNETGLWTNRQTHTHSVPQAAKEADDIDDIFALMGV", "length": 431, "header": "tr|A0A9J7FUR7-1|A0A9J7FWI7_CRIGR Computationally mapped isoform of Nucleolus and neural progenitor protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Nepro PE=4 SV=1 CANONICAL=A0A9J7FWI7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7/entry#A0A9J7FWI7-1", "sequence": { "sequence": "MAAALRRGAEPWNRVRIPQAGSSSTLTVRDPSATLDICIAAVIKGCHLVTQSIKSKTLDAEVDVLCSVLYSNHNRMGRHKPHLALRQVEQCLKRLKNMNLEGSVEDLSQLLSANETQPGATENRVVPSQPVVEVVLMKVLGGCKLLLRLLDCCCKAFRLIVKHLGLQEFIILNLVMIGLVSRLWVLHKGLLRRLVSLYEPLFQLLQEVSRIHPMPYFKEYAFPSDVTDFLGPPYVELFKGKPPEAVATKGVTKLLNKLFTMKEQLPKVSEDTLDRISKTSEQMKNNAQSSMDLGQPVRMSKKTRKEKPSGFDVRALCTRLRNKATQETSREFKCSQSRLKTSKLSSQKLTRTLWASNIVQRIRVTKTFTQLSEEIQTAVMWCRSKKLKAQATYLGNKLLKSNRLRHVEAQGYSLPKKLQCMKTSLCNCLLRGSIISTSKCSPRQKRSKHKVLSRQRKPQRKLQSTLLKETQQEPEGTLKSTRDPSAKWSRSGGTVQRTDVCPNRKQVLRRLSKSVLKTKEPGFHGNLTAGSRNETGLWTNRQTHTHSVPQAAKEADDIDDIFALMGV", "length": 567, "header": "tr|A0A9J7FWI7-1|A0A9J7FWI7_CRIGR Isoform 1 of Nucleolus and neural progenitor protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Nepro PE=4 SV=1 CANONICAL=A0A9J7FWI7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7/entry#A0A9J7FWQ8-1", "sequence": { "sequence": "MCLDNSSRRCGVAAQWDICIAAVIKGCHLVTQSIKSKTLDAEVDVLCSVLYSNHNRMGRHKPHLALRQVEQCLKRLKNMNLEGSVEDLSQLLSANETQPGATENRVVPSQPVVEVVLMKVLGGCKLLLRLLDCCCKAFRLIVKHLGLQEFIILNLVMIGLVSRLWVLHKGLLRRLVSLYEPLFQLLQEVSRIHPMPYFKEYAFPSDVTDFLGPPYVELFKGKPPEAVATKGVTKLLNKLFTMKEQLPKVSEDTLDRISKTSEQMKNNAQSSMDLGQPVRMSKKTRKEKPSGFDVRALCTRLRNKATQETSREFKCSQSRLKTSKLSSQKLTRTLWASNIVQRIRVTKTFTQLSEEIQTAVMWCRSKKLKAQATYLGNKLLKSNRLRHVEAQGYSLPKKLQCMKTSLCNCLLRGSIISTSKCSPRQKRSKHKVLSRQRKPQRKLQSTLLKETQQEPEGTLKSTRDPSAKWSRSGGTVQRTDVCPNRKQVLRRLSKSVLKTKEPGFHGNLTAGSRNETGLWTNRQTHTHSVPQAAKEADDIDDIFALMGV", "length": 548, "header": "tr|A0A9J7FWQ8-1|A0A9J7FWQ8_CRIGR Computationally mapped isoform of Nucleolus and neural progenitor protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Nepro PE=4 SV=1 CANONICAL=A0A9J7FWI7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUR7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773001", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773001", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of Notch signaling pathway", "id": "GO:0045747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045747", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FWI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWI7" }, { "id": "PF14780", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14780" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolus and neural progenitor protein-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 202, "start_aa": "Trp", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 526, "end_pos": 528 }, { "start_pos": 533, "end_pos": 535 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FYG5-1", "uniprot_ac": "A0A9J7FYG5", "uniprot_id": "A0A9J7FYG5_CRIGR", "mass": { "chemical_mass": 31046.0, "monoisotopic_mass": 31046.0 }, "refseq": { "ac": "XP_027268930", "name": "transport and Golgi organization protein 2 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268930" }, "gene_names": [ { "name": "Tango2", "type": "recommended", "evidence": [ { "id": "A0A9J7FYG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5" } ] }, { "name": "Tango2", "type": "synonym", "evidence": [ { "id": "XP_027268930", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268930" } ] } ], "protein_names": [ { "name": "Transport and Golgi organization protein 2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FYG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5/entry#names_and_taxonomy" } ] }, { "name": "transport and Golgi organization protein 2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027268930", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268930" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268930", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268930" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tango2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5", "locus": {} } ], "crossref": [ { "id": "100774094", "url": "https://www.ncbi.nlm.nih.gov/gene/100774094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774094", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FYG5", "url": "https://www.orthodb.org/?gene=A0A9J7FYG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FZI5", "url": "https://www.orthodb.org/?gene=A0A9J7FZI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268930", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268930", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FVE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKLADFWGDNNDILSGLDMEEGKAGGTWLGISTRGKLGALTNYLQPRQEPYARGRGELVTHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLSTAKEDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEVVEQSEALPKDTLITHLLDVLNNEEAQLPDPAIEDQGREYVQPILSKYAAVCVRCATYGTRTNTIILVDADGHVTFTERSLLNKDTSHWETNTYEFTLQS", "length": 276, "header": "tr|A0A9J7FYG5-1|A0A9J7FYG5_CRIGR Isoform 1 of Transport and Golgi organization protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Tango2 PE=4 SV=1 CANONICAL=A0A9J7FYG5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FVE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5/entry#A0A9J7FVE9-1", "sequence": { "sequence": "MEEGKAGGTWLGISTRGKLGALTNYLQPRQEPYARGRGELVTHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLSTAKEDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEVVEQSEALPKDTLITHLLDVLNNEEAQLPDPAIEDQGREYVQPILSKYAAVCVRCATYGTRTNTIILVDADGHVTFTERSLLNKDTSHWETNTYEFTLQS", "length": 225, "header": "tr|A0A9J7FVE9-1|A0A9J7FYG5_CRIGR Computationally mapped isoform of Transport and Golgi organization protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Tango2 PE=4 SV=1 CANONICAL=A0A9J7FYG5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5/entry#A0A9J7FXD6-1", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKLADFWGDNNDILSGLDMEEGKAGGTWLGISTRGKLGALTNYLQPRQEPYARGRGELVTHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLSTAKEDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEVVEQSEALPKDTLITHLLDVLNNEEATNTIILVDADGHVTFTERSLLNKDTSHWETNTYEFTLQS", "length": 241, "header": "tr|A0A9J7FXD6-1|A0A9J7FXD6_CRIGR Computationally mapped isoform of Transport and Golgi organization protein 2 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Tango2 PE=4 SV=1 CANONICAL=A0A9J7FYG5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5/entry#A0A9J7FYG5-1", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKLADFWGDNNDILSGLDMEEGKAGGTWLGISTRGKLGALTNYLQPRQEPYARGRGELVTHFLTSDMDSLSYLKKVSTEGHLYNGFNLIAADLSTAKEDVVCYYGNRGEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEVVEQSEALPKDTLITHLLDVLNNEEAQLPDPAIEDQGREYVQPILSKYAAVCVRCATYGTRTNTIILVDADGHVTFTERSLLNKDTSHWETNTYEFTLQS", "length": 276, "header": "tr|A0A9J7FYG5-1|A0A9J7FYG5_CRIGR Isoform 1 of Transport and Golgi organization protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Tango2 PE=4 SV=1 CANONICAL=A0A9J7FYG5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYG5/entry#A0A9J7FZI5-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/A0A9J7FWP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0V7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0V7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K677", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K677", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K677-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K677-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1280, "header": "tr|A0A9J7FYN4-1|A0A9J7FYN4_CRIGR Isoform 1 of Ataxin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7FWE1-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQYKPTTNSSCKAALEEPKGQIPSSLLLLLPTGSTEN", "length": 1250, "header": "tr|A0A9J7FWE1-1|A0A9J7FYN4_CRIGR Computationally mapped isoform of Ataxin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7FWJ4-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1210, "header": "tr|A0A9J7FWJ4-1|A0A9J7FWJ4_CRIGR Computationally mapped isoform of Ataxin-2 isoform X9 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7FWP7-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1262, "header": "tr|A0A9J7FWP7-1|A0A9J7FWP7_CRIGR Computationally mapped isoform of Ataxin-2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7FYN4-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1280, "header": "tr|A0A9J7FYN4-1|A0A9J7FYN4_CRIGR Isoform 1 of Ataxin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7G0V7-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1260, "header": "tr|A0A9J7G0V7-1|A0A9J7G0V7_CRIGR Computationally mapped isoform of Ataxin-2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7GVE9-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYVLVTPCQNEPCVNTKDH", "length": 1089, "header": "tr|A0A9J7GVE9-1|A0A9J7GVE9_CRIGR Computationally mapped isoform of Ataxin-2 isoform X11 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JH62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7JH62-1", "sequence": { "sequence": "MRPSTAAAQRPAAGPESRRLSGWAARRSLPRTARRGGRRRGAVSPPALPRAPRRPPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATASARVCPLGVRASPPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPPGRAGLVFRGAGPVAPVASSSASTGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGTSSRESKYIPPGQRNREVISWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNSPSGPVLASPQAGIIPTEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTPESMDQLLSKNREGEKSRDLMKDKIEASAKDAFVDNSSSNCTSGSSKTNSPSISPSVLSNSEHKRGPEVTSQGVQTSSPACKQEKEDREEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGNHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL", "length": 1278, "header": "tr|A0A9J7JH62-1|A0A9J7JH62_CRIGR Computationally mapped isoform of Ataxin-2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Atxn2 PE=3 SV=1 CANONICAL=A0A9J7FYN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4/entry#A0A9J7JLW4-1", "sequence": { "sequence": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWE1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772811", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772811", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYN4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", 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"recommended", "evidence": [ { "id": "A0A9J7FWF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0" } ] }, { "name": "Dppa2", "type": "synonym", "evidence": [ { "id": "XP_027269060", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269060" } ] } ], "protein_names": [ { "name": "Developmental pluripotency-associated protein 2", "type": "synonym", "evidence": [ { "id": "A0A9J7FWF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0/entry#names_and_taxonomy" } ] }, { "name": "developmental pluripotency-associated protein 2", "type": "synonym", "evidence": [ { "id": "XP_027269060", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269060" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 38% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269060", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269060" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dppa2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWF0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWF0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760093", "url": "https://www.ncbi.nlm.nih.gov/gene/100760093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760093", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FWF0", "url": "https://www.orthodb.org/?gene=A0A9J7FWF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16073:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16073:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269060", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269060", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FWF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSSQDAHELSHNQYFKEEFEDDIILTLVPATEEEEEITGLPTESVWSTMDHRPPVPPMTSEVSKPEATKLKPRHPSLPSILPPITEVSRNTLREWCRFCNLSTDGKKVEVYLRLQQHSYADQQCVSNGYGDGVGLVPTNSLEAKMKPKSKMVKKEPTKITIKGLRPQDTGIVEVMTPGRQSILAAWGRITNRATLPMVANRQPLPSNVKAFLPPASGVRWCVVEGKVLPANKTGWVRLQMKTGHTWVPDSPQRMILLFLLPACVLPEPGVEDNLLCPECVERNRKLMRNFKRDKRNKKKHKILPSNLPP", "length": 311, "header": "tr|A0A9J7FWF0-1|A0A9J7FWF0_CRIGR Isoform 1 of Developmental pluripotency-associated protein 2 OS=Cricetulus griseus OX=10029 GN=Dppa2 PE=4 SV=1 CANONICAL=A0A9J7FWF0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF0/entry#A0A9J7FWF0-1", "sequence": { "sequence": "MSLSSQDAHELSHNQYFKEEFEDDIILTLVPATEEEEEITGLPTESVWSTMDHRPPVPPMTSEVSKPEATKLKPRHPSLPSILPPITEVSRNTLREWCRFCNLSTDGKKVEVYLRLQQHSYADQQCVSNGYGDGVGLVPTNSLEAKMKPKSKMVKKEPTKITIKGLRPQDTGIVEVMTPGRQSILAAWGRITNRATLPMVANRQPLPSNVKAFLPPASGVRWCVVEGKVLPANKTGWVRLQMKTGHTWVPDSPQRMILLFLLPACVLPEPGVEDNLLCPECVERNRKLMRNFKRDKRNKKKHKILPSNLPP", "length": 311, "header": "tr|A0A9J7FWF0-1|A0A9J7FWF0_CRIGR Isoform 1 of Developmental pluripotency-associated protein 2 OS=Cricetulus griseus OX=10029 GN=Dppa2 PE=4 SV=1 CANONICAL=A0A9J7FWF0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 233, "end_pos": 235 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"name": "Tmem132b", "type": "synonym", "evidence": [ { "id": "XP_027269660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269660" } ] } ], "protein_names": [ { "name": "Transmembrane protein 132B", "type": "synonym", "evidence": [ { "id": "A0A9J7FWF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF1/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 132B", "type": "synonym", "evidence": [ { "id": "XP_027269660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269660" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269660" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem132b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWF1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751479", "url": "https://www.ncbi.nlm.nih.gov/gene/100751479", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13388:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13388:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15706", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15706", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269660", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FWF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSKVGTIVNFTHQHFTSQVEVTVWVPRLPLQIEISDTELSQIKGWRIPVASNRRPTRESDDEEDEEKKGRGCTLQYQHALVRVLTQFVTESPDLGQLTYMLGPDWQFDITNLVTEFVKVEEPKIAQLQDGRILAGREPGITTVQVLSPLSDSILAEKTVIVLDDRVTITELGVQLVAGLSLSLQPHKADKRAIISTVAAQDVLQAPQQEAIVSSWILFSDGSVTPLDIYDPKDFSVSVSSLDEMVVSVQPNLQTRWPIVVAEGEGQGPLIKLEMSISESCQKNKRKSTLAVGKGSVKVRFEPGMHEQQGGSNDIEGINREYKGHLSNSIEREGSQERAAQEWFHGVPVGHEDRTNKSTTPQSPMGGKLLKGGADAFTSFPTQGKLPESNNPGDLTMTSRGLTDLEIGMYALLCVFCLAILVFLINCVAFAWKYRHKRFAVSEQGNIPHSHDWVWLGNEVELLENPVDITLPSEECTTMIDRGLQFEERNFLLNGSSQKTFHSQLLRPPDYVYEKELKNEPMGSSGPKRKRVKFTSYTTILPEDGGPYTNSILFDSDDSIKWVCQDMGLGDSQDFRDYMERLQDQM", "length": 586, "header": "tr|A0A9J7FWF1-1|A0A9J7FWF1_CRIGR Isoform 1 of Transmembrane protein 132B OS=Cricetulus griseus OX=10029 GN=Tmem132b PE=4 SV=1 CANONICAL=A0A9J7FWF1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWF1-1", "url": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754638", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754638", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF9" } ], "pmid": "" }, { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FWG7-1", "uniprot_ac": "A0A9J7FWG7", "uniprot_id": "A0A9J7FWG7_CRIGR", "mass": { "chemical_mass": 102344.0, "monoisotopic_mass": 102344.0 }, "refseq": { "ac": "XP_027268354", "name": "protein CIP2A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268354" }, "gene_names": [ { "name": "Cip2a", "type": "recommended", "evidence": [ { "id": "A0A9J7FWG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7" } ] }, { "name": "Cip2a", "type": "synonym", "evidence": [ { "id": "XP_027268354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268354" } ] } ], "protein_names": [ { "name": "Protein CIP2A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FWG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7/entry#names_and_taxonomy" } ] }, { "name": "protein CIP2A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027268354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268354" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268354", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268354" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cip2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FWG7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FWG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760685", "url": "https://www.ncbi.nlm.nih.gov/gene/100760685", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760685", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760685", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FWG7", "url": "https://www.orthodb.org/?gene=A0A9J7FWG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23161:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23161:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21044", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21044", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268354", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268354", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FWG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSTACLKSLLLSISQYKAVKSEANATQLLRHLEVVSGQKLTRLFTSHQILPSECLSCLVELLEDPNISASLILSIISLLSQLAVDTETRDCLQSIYNLNSVLAGVVCRSSTCHSDSVFLQCIQLLQRLTYNVKFFHSGAHIDDLITFLIGHIQSSEDELTMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHSRNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLNQVLGLLNAKDPASSSKVLELLLAFCAVAQLRHVLSQMMFEQSPSSNSILGSRPKSLEPTVALLRWLNQPLDASENCSVLALELFKEIFEDVIDTGNCSSTDRFVNLLLPTILDQLQFTEQNLDEVLTRKKCERMVKAIEILLTLCGDDTLKMHIVKVLTTIKCTTLIEQQFMYGKIDLGFGTKVADSELCKLAADVILKTLNLMNKLKQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEAAPLPDFPALVLGESIAANNIYRQQETEHLPRKMPLQPLNHFFPASAKCLTPPLSKDNAPSLNIEELIEKLQAGVMVKDQINDIRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREAERKNEELGILLKSQQLESERAQNDIEHLFQHSKKLESVAKEHEILTKSYMELVQRNETTEKKNTDLQITCESLNKQIETVKKLNESLKQQNEKTIAQLMEKEEQRKEVQSQLVDRECKLSNLHKKAMSQEEKINVLLKEKDDKQETIDVLRKELSRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 908, "header": "tr|A0A9J7FWG7-1|A0A9J7FWG7_CRIGR Isoform 1 of Protein CIP2A isoform X1 OS=Cricetulus griseus OX=10029 GN=Cip2a PE=4 SV=1 CANONICAL=A0A9J7FWG7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7/entry#A0A9J7FWG7-1", "sequence": { "sequence": 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isoform X1 OS=Cricetulus griseus OX=10029 GN=Cip2a PE=4 SV=1 CANONICAL=A0A9J7FWG7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7/entry#A0A9J7FWP2-1", "sequence": { "sequence": "MPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHSRNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLNQVLGLLNAKDPASSSKVLELLLAFCAVAQLRHVLSQMMFEQSPSSNSILGSRPKSLEPTVALLRWLNQPLDASENCSVLALELFKEIFEDVIDTGNCSSTDRFVNLLLPTILDQLQFTEQNLDEVLTRKKCERMVKAIEILLTLCGDDTLKMHIVKVLTTIKCTTLIEQQFMYGKIDLGFGTKVADSELCKLAADVILKTLNLMNKLKQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEAAPLPDFPALVLGESIAANNIYRQQETEHLPRKMPLQPLNHFFPASAKCLTPPLSKDNAPSLNIEELIEKLQAGVMVKDQINDIRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREAERKNEELGILLKSQQLESERAQNDIEHLFQHSKKLESVAKEHEILTKSYMELVQRNETTEKKNTDLQITCESLNKQIETVKKLNESLKQQNEKTIAQLMEKEEQRKEVQSQLVDRECKLSNLHKKAMSQEEKINVLLKEKDDKQETIDVLRKELSRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 747, "header": "tr|A0A9J7FWP2-1|A0A9J7FWP2_CRIGR Computationally mapped isoform of Protein CIP2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Cip2a PE=4 SV=1 CANONICAL=A0A9J7FWG7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FWG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWG7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613788.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639327", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639327" } ] }, { "annotation": "May be required for cellular fusion during osteoclastogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX12#function" }, { "database": "UniProtKB", "id": "ARBA00003045", "url": "https://www.uniprot.org/uniprotkb/ARBA00003045#function" }, { "database": "UniProtKB", "id": "A0A9J7G1H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1#function" }, { "database": "UniProtKB", "id": "A0A9J7JM70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM70#function" }, { "database": "UniProtKB", "id": "A0A9J7GWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWJ7#function" }, { "database": "UniProtKB", "id": "A0A061I9A7", "url": "https://www.uniprot.org/uniprotkb/A0A061I9A7#function" }, { "database": "UniProtKB", "id": "PIRNR009935", "url": "https://www.uniprot.org/uniprotkb/PIRNR009935#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tcta", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1H1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1H1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763762", "url": "https://www.ncbi.nlm.nih.gov/gene/100763762", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763762", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763762", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SMWESTS", "url": "https://omabrowser.org/oma/group/SMWESTS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061I9A7", "url": "https://www.orthodb.org/?gene=A0A061I9A7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FX12", "url": "https://www.orthodb.org/?gene=A0A9J7FX12", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G1H1", "url": "https://www.orthodb.org/?gene=A0A9J7G1H1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JM70", "url": "https://www.orthodb.org/?gene=A0A9J7JM70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32267:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32267:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15128", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15128", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639327", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639327", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I9A7", "url": "https://www.uniprot.org/uniprotkb/A0A061I9A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I9A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I9A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGKWQQMNLSKPTENKGRQQQKRLQRHNWDCWLLGCILLLPRPVGQLQRAWGWGTGVPQCFQGEPPLLSALPSTAPGTGQVKSVSTPV", "length": 161, "header": "tr|A0A9J7G1H1-1|A0A9J7G1H1_CRIGR Isoform 1 of T-cell leukemia translocation-altered gene protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "isoforms": [ { "isoform_ac": "A0A061I9A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1/entry#A0A061I9A7-1", "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLKTHRE", "length": 106, "header": "tr|A0A061I9A7-1|A0A061I9A7_CRIGR Computationally mapped isoform of T-cell leukemia translocation-altered gene protein homolog OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1/entry#A0A9J7FX12-1", "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGKWQQMNLSKPTENKGRQQQKRLQRHNWDCWLLGCILLLPRPVGQLQRAWGWGTGVPQCFQGEPPLLSALPSTAPDVT", "length": 152, "header": "tr|A0A9J7FX12-1|A0A9J7G1H1_CRIGR Computationally mapped isoform of T-cell leukemia translocation-altered gene protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1/entry#A0A9J7G1H1-1", "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGKWQQMNLSKPTENKGRQQQKRLQRHNWDCWLLGCILLLPRPVGQLQRAWGWGTGVPQCFQGEPPLLSALPSTAPGTGQVKSVSTPV", "length": 161, "header": "tr|A0A9J7G1H1-1|A0A9J7G1H1_CRIGR Isoform 1 of T-cell leukemia translocation-altered gene protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1/entry#A0A9J7GWJ7-1", "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPASCSSGCVPASRSGWPEWIHT", "length": 95, "header": "tr|A0A9J7GWJ7-1|A0A9J7GWJ7_CRIGR Computationally mapped isoform of T-cell leukemia translocation-altered gene protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JM70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1/entry#A0A9J7JM70-1", "sequence": { "sequence": "MAEPWSGQFLQALPASVLGALGTLGSEFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGKWQQMNLSKPTENKGRQQQKRLQRHNWDCWLLGCILLLPRPVGQLQRAWGWGTGVPQCFQDVT", "length": 138, "header": "tr|A0A9J7JM70-1|A0A9J7JM70_CRIGR Computationally mapped isoform of T-cell leukemia translocation-altered gene protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Tcta PE=3 SV=1 CANONICAL=A0A9J7G1H1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX12" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX12" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763762", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763762", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1SSR7-1", "protein_name": "T-cell leukemia translocation-altered gene protein homolog", "gene_name": "TCTA", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAEPWSGQSLQVLPATVLGALGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLSIQLAWGFYGSTVTGLYHRPGLGSQNGSTPDGSTHFSSWETAANEPLKTHRE", "length": 106 }, "evidence": [ { "id": "A0A9J7G1H1", "url": "https://omabrowser.org/oma/group/A0A9J7G1H1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P57738-1", "protein_name": "T-cell leukemia translocation-altered gene protein", "gene_name": "TCTA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLKTHRE", "length": 103 }, "evidence": [ { "id": "A0A9J7G1H1", "url": "https://omabrowser.org/oma/group/A0A9J7G1H1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5EAA5-1", "protein_name": "T-cell leukemia translocation-altered gene protein homolog", "gene_name": "TCTA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEPWSGQSLQALPATVLGALGALGSEFLREWEAQDMRVTLFKLLLFWLVLSLLSIQLAWGFYGSTVTGLYHRPGLGGQNGSTPDGSTHFPSWETAANEPLKTHRE", "length": 106 }, "evidence": [ { "id": "A0A9J7G1H1", "url": "https://omabrowser.org/oma/group/A0A9J7G1H1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6DGY3-1", "protein_name": "T-cell leukemia translocation-altered gene protein homolog", "gene_name": "tcta", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEESWDFEFLSRMVDSLVSFLSEFVDDWLANDMRVAVFKILFSWLVVSLVAIHFAWKVYGNTVNDMYYRQGTGGQNGGTPDTHLSGWESAAGDAMKTHRE", "length": 100 }, "evidence": [ { "id": "A0A9J7G1H1", "url": "https://omabrowser.org/oma/group/A0A9J7G1H1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8VEA7-1", "protein_name": "T-cell leukemia translocation-altered gene protein homolog", "gene_name": "Tcta", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPWAGQFLQALPATVLGALGTLGSDFLREWETQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPDPHPQPPAAMGVFLPPGLGGQNGSTPDGSTHFSSWEIAANEALKTHRE", "length": 122 }, "evidence": [ { "id": "A0A9J7G1H1", "url": "https://omabrowser.org/oma/group/A0A9J7G1H1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "osteoclast fusion", "id": "GO:0072675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072675", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FX16-1", "uniprot_ac": "A0A9J7FX16", "uniprot_id": "A0A9J7FX16_CRIGR", "mass": { "chemical_mass": 36243.0, "monoisotopic_mass": 36243.0 }, "refseq": { "ac": "XP_007645376", "name": "LOW QUALITY PROTEIN: serine protease 46", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645376" }, "gene_names": [ { "name": "Prss46p", "type": "recommended", "evidence": [ { "id": "A0A9J7FX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16" } ] }, { "name": "Prss46p", "type": "synonym", "evidence": [ { "id": "XP_007645376", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645376" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: serine protease 46", "type": "synonym", "evidence": [ { "id": "XP_007645376", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645376" }, { "id": "A0A9J7FX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614270.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645376" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prss46p", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766613", "url": "https://www.ncbi.nlm.nih.gov/gene/100766613", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766613", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766613", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FX16", "url": "https://www.orthodb.org/?gene=A0A9J7FX16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24256", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24256", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645376", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACGSVDPQSLLPHPLSSPRFDNLPYVEGPWFWSCGQTNISCKVVNGKVVEVGKWPWQVSILFLGMYVCSGSLIHHHWVLTAAHCLQRSKDPANYTVKVGVQNLPDNSSELLLTSIVIHEKFSNQISYDIAILKLKYPVAWSPLIQPICLPTINFKPTIGTMCWVIGWGQEKTKGHDXIFISVVVPKTPYNLQGLAVRIVNNEICNHRYQFLLQKNQKKFIGNDMLCTSSEWGLDTCQDTSGSSLVCQVNKTWIQMGVVSWNFGCGRRGFPSIYTSTSHFTKWVKRQIVDMRFASMAVPSFLSPFILTSYILLVSLGSLWLL", "length": 322, "header": "tr|A0A9J7FX16-1|A0A9J7FX16_CRIGR Isoform 1 of LOW QUALITY PROTEIN: serine protease 46 OS=Cricetulus griseus OX=10029 GN=Prss46p PE=3 SV=1 CANONICAL=A0A9J7FX16-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16/entry#A0A9J7FX16-1", "sequence": { "sequence": "MACGSVDPQSLLPHPLSSPRFDNLPYVEGPWFWSCGQTNISCKVVNGKVVEVGKWPWQVSILFLGMYVCSGSLIHHHWVLTAAHCLQRSKDPANYTVKVGVQNLPDNSSELLLTSIVIHEKFSNQISYDIAILKLKYPVAWSPLIQPICLPTINFKPTIGTMCWVIGWGQEKTKGHDXIFISVVVPKTPYNLQGLAVRIVNNEICNHRYQFLLQKNQKKFIGNDMLCTSSEWGLDTCQDTSGSSLVCQVNKTWIQMGVVSWNFGCGRRGFPSIYTSTSHFTKWVKRQIVDMRFASMAVPSFLSPFILTSYILLVSLGSLWLL", "length": 322, "header": "tr|A0A9J7FX16-1|A0A9J7FX16_CRIGR Isoform 1 of LOW QUALITY PROTEIN: serine protease 46 OS=Cricetulus griseus OX=10029 GN=Prss46p PE=3 SV=1 CANONICAL=A0A9J7FX16-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX16" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 289, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FX44-1", "uniprot_ac": "A0A9J7FX44", "uniprot_id": "A0A9J7FX44_CRIGR", "mass": { "chemical_mass": 62260.0, "monoisotopic_mass": 62260.0 }, "refseq": { "ac": "XP_027271050", "name": "microtubule-associated protein 11 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271050" }, "gene_names": [ { "name": "Map11", "type": "recommended", "evidence": [ { "id": "A0A9J7FX44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44" } ] }, { "name": "Map11", "type": "synonym", "evidence": [ { "id": "XP_027271050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271050" } ] } ], "protein_names": [ { "name": "Microtubule-associated protein 11 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FX44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44/entry#names_and_taxonomy" } ] }, { "name": "microtubule-associated protein 11 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027271050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271050" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271050", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271050" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Map11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44", "locus": {} } ], "crossref": [ { "id": "A0A9J7FX44", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FX44", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771428", "url": "https://www.ncbi.nlm.nih.gov/gene/100771428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055453", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055453", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771428", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771428", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FX44", "url": "https://www.orthodb.org/?gene=A0A9J7FX44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16096", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16096", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16096:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16096:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15806", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15806", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271050", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271050", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESQCDYSMYFPAVPLPPRAELAGDPGRYRTLPRRNHLYLGETVRFLLVLRCRGGAGPRGQGGLASRGLAELAPGRLVGQREGAAGGGAGDPDAEPPGGGDPGGGGLFRGCSPLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREVEAPEVRDQGYLRLLQTRSPGETFRVEQSAFKAQVSTLLTLLPPPVLKCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTSGYFPCPLSALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRLPSVRLDRPCFVMTASCESPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEEERRAMQAALDSIVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK", "length": 572, "header": "tr|A0A9J7FX44-1|A0A9J7FX44_CRIGR Isoform 1 of Microtubule-associated protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map11 PE=4 SV=1 CANONICAL=A0A9J7FX44-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX44/entry#A0A9J7FX44-1", "sequence": { "sequence": "MESQCDYSMYFPAVPLPPRAELAGDPGRYRTLPRRNHLYLGETVRFLLVLRCRGGAGPRGQGGLASRGLAELAPGRLVGQREGAAGGGAGDPDAEPPGGGDPGGGGLFRGCSPLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREVEAPEVRDQGYLRLLQTRSPGETFRVEQSAFKAQVSTLLTLLPPPVLKCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTSGYFPCPLSALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRLPSVRLDRPCFVMTASCESPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEEERRAMQAALDSIVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK", "length": 572, "header": "tr|A0A9J7FX44-1|A0A9J7FX44_CRIGR Isoform 1 of Microtubule-associated protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map11 PE=4 SV=1 CANONICAL=A0A9J7FX44-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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"A0A9J7FZE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSCWSKRSRYSVPECLLQNLSNLSGDLDRDHSTLMVPSESLASQPLPRTLSSPPPTLPQGPFSGQPSLSTPLSPSSPSGTKVEGQLPSPCLPSSLPLPPTASPPSLPPLHSSVPQPAPGSLSTHWPTPPESSLVPSHSRSQPTPGLLCPLREVAGNEGIVRVHAPFSLQDLSQIEKRLGSFSENPSVYIKEFRFLSQAYDLTWHDLCAIQASTLTPEERGWIQAAARQYADQTHLVDNTVPVGDMAVPATEPHWNYQSGQSGCQKRDLMVHCLLQGMEMVSKKIEFSQIEKRLGSFSENPSVYIKEFRFLSQAYDLTWHDLYVIQTSTLTPEERDRIQAAARKYADQIYLVNYPVLVFDVVPVTEPNWDYRPGQSGCQMRDLMVHCLLQGMEMVSKEIYFDKFQAITQQADENPAVFLNRLREAMVHTHLEPTSTPGAIILAIHFIYQSSPDIRKKLKKAEYGPQTPIHELLRLALKVFNAREEAQLREKAMLQARALASALRPLATPQGGQGKSTRLRRAGAQPRSNPPGPCFKCGQEGHWSRCCPDPQPPTKPCPICRQPGHWKSECPHWGSSSMPRHRGHPNTHLEILLALDLLGLLD", "length": 602, "header": "tr|A0A9J7FX57-1|A0A9J7FX57_CRIGR Isoform 1 of Uncharacterized protein LOC107979701 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107979701 PE=4 SV=1 CANONICAL=A0A9J7FX57-1" }, "isoforms": [ { "isoform_ac": 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"site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 144, "start_aa": "Thr", "end_pos": 144, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr144", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 436, "start_aa": "Thr", "end_pos": 436, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr436", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:107979701", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107979701", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX57" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268821" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH3orf70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87", "locus": {} } ], "crossref": [ { "id": "A0A9J7FX87", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FX87", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757514", "url": "https://www.ncbi.nlm.nih.gov/gene/100757514", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029670", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029670", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757514", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757514", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FX87", "url": "https://www.orthodb.org/?gene=A0A9J7FX87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31785:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31785:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268821", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAAAAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPARPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPVPHSQKMSPEEVSAHDALISKESDTPKLDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETTV", "length": 248, "header": "tr|A0A9J7FX87-1|A0A9J7FX87_CRIGR Isoform 1 of UPF0524 protein C3orf70 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH3orf70 PE=3 SV=1 CANONICAL=A0A9J7FX87-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87/entry#A0A9J7FX87-1", "sequence": { "sequence": "MSAAAAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPARPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPVPHSQKMSPEEVSAHDALISKESDTPKLDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETTV", "length": 248, "header": "tr|A0A9J7FX87-1|A0A9J7FX87_CRIGR Isoform 1 of UPF0524 protein C3orf70 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH3orf70 PE=3 SV=1 CANONICAL=A0A9J7FX87-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757514", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757514", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FX88-1", "uniprot_ac": "A0A9J7FX88", "uniprot_id": "A0A9J7FX88_CRIGR", "mass": { "chemical_mass": 262632.0, "monoisotopic_mass": 262632.0 }, "refseq": { "ac": "XP_027271140", "name": "golgin subfamily A member 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271140" }, "gene_names": [ { "name": "Golga4", "type": "recommended", "evidence": [ { "id": "A0A9J7FX88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ] }, { "name": "Golga4", "type": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271140", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271140" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Golga4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88", "locus": {} } ], "crossref": [ { "id": "100754180", "url": "https://www.ncbi.nlm.nih.gov/gene/100754180", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNREVLAGMVAEPAFLSEYTIFALDSSKQPKTQIGSVNVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMFPSPRSGIF", "length": 2271, "header": "tr|A0A9J7FX88-1|A0A9J7FX88_CRIGR Isoform 1 of Golgin subfamily A member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MTV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A8C2MTV3-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNRENVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMSWLRTSS", "length": 2236, "header": "tr|A0A8C2MTV3-1|A0A8C2MTV3_CRIGR Computationally mapped isoform of Golgin subfamily A member 4 isoform X7 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FX88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A9J7FX88-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNREVLAGMVAEPAFLSEYTIFALDSSKQPKTQIGSVNVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMFPSPRSGIF", "length": 2271, "header": "tr|A0A9J7FX88-1|A0A9J7FX88_CRIGR Isoform 1 of Golgin subfamily A member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G090-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A9J7G090-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNRENVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMFPSPRSGIF", "length": 2238, "header": "tr|A0A9J7G090-1|A0A9J7G090_CRIGR Computationally mapped isoform of Golgin subfamily A member 4 isoform X6 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G093-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A9J7G093-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNREVLAGMVAEPAFLSEYTIFALDSSKQPKTQIGSVNVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMFPSPRSGIF", "length": 2243, "header": "tr|A0A9J7G093-1|A0A9J7G093_CRIGR Computationally mapped isoform of Golgin subfamily A member 4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A9J7G1A4-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNREVLAGMVAEPAFLSEYTIFALDSSKQPKTQIGSVNVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMFPSPRSGIF", "length": 2270, "header": "tr|A0A9J7G1A4-1|A0A9J7G1A4_CRIGR Computationally mapped isoform of Golgin subfamily A member 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88/entry#A0A9J7JR75-1", "sequence": { "sequence": "MFKKLKQRISEEQQQLQPPQASAPAQASSSSSTPTRIRSRTSSFTEQLDDVTPNREVLAGMVAEPAFLSEYTIFALDSSKQPKTQIGSVNVSTQATKSPDGVNRSEASPPQSGDTQTFAQKLQLRVPSVESLFRSPIKESLFWSSKESLVRTSSRESLSQLDLDCPAATFDPPSDMESEAEDAPGSSDSLNREQLLQRLRRMERSLSSYRGKYSELVTAYQTLQREKKKLQGILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACLEEKDQYISVLQTQVSLLKQRLQNGPMSADLAQPPPPSELQVEVDPDRERTEDVGEPVGGRASTKTLEMLQQRVKRQENLLQRCKETIRSQKEQCSQLSSEKEALQEQLDERLQELEKVKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMHETLELKEEEITQLRSRIKQMTSQGEELREQKEKSERAAFEELEKALSTAQKTEEAQRRMKAEMDEQIKAVERASEEERLRLQQELSRVRQEAVNMMKKTSEEQLAELQRLHAEELASREQELARKLQTRERELHEQMKIALEKSQSEYLKLIQEKEQQDSLALEELELQKKAILSESENKLQELGREAEVYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHSKELTAMTEKHRAELERLQQQQDSLWAERLQGLTQQHQTAVEQLRKKYEQDKDALLKEKESLFQAHIRDMNEKTLEKLDVKQTELESLSSELAEALKAREQLAEELSVLRGDAEKMKQALEAELEEQRRHHQHEVDSMSKEQEITVQRTEKTLKDELNQLGLLLKERDEHLKEQQARIDDLEAHLHKSAGELQQALAKLDLLHSQQSTTHEQMGLYEEQLAQMRQKVLDLETEKNLLTKQVADLETQEKHMCMELDTRRAQAQQLEEQKRELEEKGRSLAQLHESQLKDSHMEKEETRQILMEKENVILQMREEIEALKQKLSSKEESISILHEEYETKFKNQEKRVEKIKQKAKEMQETKKKLLDQEAKLKKELENTVLELSQKEKQFNAQILEMAQANSAGISDTVSRLEANQKQQIESLTKAHQRKLDDVTECWEKRLSHQAEELRDQHERRVEEKEQELTELKQKLLTLESEKEEVSKAAVGLKEAAAKQGAVLTRLQEQLEQKSAHIGSLSQKEAQLQSQVEKLEMDLGCSLKEKASLEKELADLKVLSERGRLRVSELLSKVQAAEEELRSCRAAQDSSRKSLEDKSLTLKTLLGELASQLDSRCEKTKALLEAKTNELLSVSGDKTDAILSRLSRCRQHTATVREALLMKTGQVSELEAQLKQLTEEQHTLKSSVQQVTHQLEEKENQIKAMKADIEGLVTEKEALQKEGGQQQQAASEKESCITQLKKELSENINAVTLLRGELSEKTAEIDSLRTQLSDLSAQLENSVSLSDKAAAMSSLSKQHEERQMELQGQLQELSLKVDTLSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDVKAKEAAEKGEQIQLLKEDLDQQNERLECLKAEVADRKNEMETKERDLEAELKVQAARVVELEDCIAHKRKEVESLNEILKNSNQEKDTERNELVQKLQHFEELGEEKDNRVREAEENVLRLEKQVSSLETELGIMKKELEHVSSSVKSRDGELKALEDKLELESASKVELKRKAEQKIAAIRKQLLSQMEEKKQQYEKDTESQLSELNAKLQDREKQIHILEEKLKNLESSLQSETVIMSRSIQNVAASSEQEAADSQGCTHKACEERILALQRRLVEKEKLLHRLEQGTGESKFSLSEMQFSMKLDHTQAKQLDDQILIGRLQEELEEKKMNCSFIASQPMEEETGKNNTGMKQNWASVVDSVQKTLQEKERTCQTLEQKVKELESDLVRERDSHRLELETLTLKYEKSQASQQEMDGKNKSVEILEDSSEENSKLQVIQPKLGNNMDTQRNDLELKLAGAEREKQKLSREVARLQKDLRVLRKEHQQELDILKRECTQEAEEKLKQEQEDLELKHTSILKQLMREFNTQLAQKEQELERTIQETIHKAQEVEAELLESHQEETQQLHRKIAEKDDDLKRTARRYEEILDAREEEMTSKVNDLQTQLEELQKKYEHRLDQEESAEDNETIMELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKTVCSPPVGTPLKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQAQKILEREDARLMSWLRTSS", "length": 2269, "header": "tr|A0A9J7JR75-1|A0A9J7JR75_CRIGR Computationally mapped isoform of Golgin subfamily A member 4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Golga4 PE=4 SV=1 CANONICAL=A0A9J7FX88-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "Golgi vesicle transport", "id": "GO:0048193", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048193", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "pmid": "" }, { "name": "Golgi to plasma membrane protein transport", "id": "GO:0043001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043001", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "pmid": "" }, { "name": "positive regulation of axon extension", "id": "GO:0045773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045773", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1848, "end_pos": 1850, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1864, "end_pos": 1866, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1936, "end_pos": 1938, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2143, "end_pos": 2145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FX88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX88" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 2209, "end_pos": 2256, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1848, "end_pos": 1850 }, { "start_pos": 1864, "end_pos": 1866 }, { "start_pos": 1936, "end_pos": 1938 }, { "start_pos": 2143, "end_pos": 2145 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FX99-1", "uniprot_ac": "A0A9J7FX99", "uniprot_id": "A0A9J7FX99_CRIGR", "mass": { "chemical_mass": 103665.0, "monoisotopic_mass": 103665.0 }, "refseq": { "ac": "XP_027267974", "name": "uncharacterized protein LOC103160929 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267974" }, "gene_names": [ { "name": "LOC103160929", "type": "recommended", "evidence": [ { "id": "A0A9J7FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99" } ] }, { "name": "LOC103160929", "type": "synonym", "evidence": [ { "id": "XP_027267974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267974" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC103160929 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC103160929 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027267974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267974" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027267974.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103160929", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99", "locus": {} } ], "crossref": [ { "id": "A0A9J7FX99", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FX99", "database": "AlphaFoldDB", "categories": [] }, { "id": "103160929", "url": "https://www.ncbi.nlm.nih.gov/gene/103160929", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:103160929", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160929", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FX99", "url": "https://www.orthodb.org/?gene=A0A9J7FX99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47236", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47236", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47236:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47236:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027267974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPGPNCMMLPVSGHMGPIPPGYFIHPDTGRVLPQTGHLGYDLLKAALIPITDYNADVVRTSEVAVLPYLPYPTSPVTGCPPATRLPTLQPRRTSQLGALMSDPITGIEVPVLAVTLHPQTRQWLTLGGTYCNPLTKTLAPLELGGPMKDPVTGGIVPILGVGLDEHTGQVLAVGGLQDGTGSLLLPGDNFEEPLSGKTVRLLGASQQAGQLLPHPGGSQALLDSNVLVAQRQVILRLQQCQETPGSRAQGLLESAIRDMRRALALSLHHILQQAQRLERQLQAARDIEATGGCIGLMCYPRTELWVPALYGMEIPDPEGSGLMVPILGMHRDGDSGNTTPLAGTMEDAAGKGLVPISIGAQAIDPLTGEHGPVIGAHMDPSARVVVPVVQLLEALPRGVRDPNLQILLEQELRAHQQYWQLREQEEQQLAEHLWHLSQELHFCPGHEATLQLKAAEEACAALEACYLQETERRARALSMLSSPERCLLSQADKKEWEEEAQVLLGVRKVLHSLGQASEKLRKTSTRLQGQAEEVCLQQSEDQSPRVWNHHRKVLQHLSDEFREVVRDRQNFLNRALGNLQYHRELSHLQLLHIQVTVSGTPVCLENYPGDRFYGTVTTCLGNQAALCPLLIPFLKGITAMLIEDQGHHLGLEDQAPAVDADKADNIWTPPLFSIMKKIDTLFQDPREIAELQRQIHLGPHRPGPRNSLQNLLKTQTMQGELVTVQTMHLSAWEFVVYQYGLSVLHLLIPQLQAPETTLQIASHLPAMEVTGNAFEGSFFYQSTENTLFVGRECLASVGRFVLLLIHCLAHITTGDFNQDCNPKFLGSFYEGLKAYFKEAFSTTLQMSAVSWDSKFDQSLSAVLLKEQSTSEKERDLLSKLIERKCEPCLSRQSSEEYIKKSNELLLFTNMEHFLKSILSEEQQILVTPRAGLHGKEKI", "length": 939, "header": "tr|A0A9J7FX99-1|A0A9J7FX99_CRIGR Isoform 1 of Uncharacterized protein LOC103160929 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160929 PE=4 SV=1 CANONICAL=A0A9J7FX99-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99/entry#A0A9J7FX99-1", "sequence": { "sequence": "MVPGPNCMMLPVSGHMGPIPPGYFIHPDTGRVLPQTGHLGYDLLKAALIPITDYNADVVRTSEVAVLPYLPYPTSPVTGCPPATRLPTLQPRRTSQLGALMSDPITGIEVPVLAVTLHPQTRQWLTLGGTYCNPLTKTLAPLELGGPMKDPVTGGIVPILGVGLDEHTGQVLAVGGLQDGTGSLLLPGDNFEEPLSGKTVRLLGASQQAGQLLPHPGGSQALLDSNVLVAQRQVILRLQQCQETPGSRAQGLLESAIRDMRRALALSLHHILQQAQRLERQLQAARDIEATGGCIGLMCYPRTELWVPALYGMEIPDPEGSGLMVPILGMHRDGDSGNTTPLAGTMEDAAGKGLVPISIGAQAIDPLTGEHGPVIGAHMDPSARVVVPVVQLLEALPRGVRDPNLQILLEQELRAHQQYWQLREQEEQQLAEHLWHLSQELHFCPGHEATLQLKAAEEACAALEACYLQETERRARALSMLSSPERCLLSQADKKEWEEEAQVLLGVRKVLHSLGQASEKLRKTSTRLQGQAEEVCLQQSEDQSPRVWNHHRKVLQHLSDEFREVVRDRQNFLNRALGNLQYHRELSHLQLLHIQVTVSGTPVCLENYPGDRFYGTVTTCLGNQAALCPLLIPFLKGITAMLIEDQGHHLGLEDQAPAVDADKADNIWTPPLFSIMKKIDTLFQDPREIAELQRQIHLGPHRPGPRNSLQNLLKTQTMQGELVTVQTMHLSAWEFVVYQYGLSVLHLLIPQLQAPETTLQIASHLPAMEVTGNAFEGSFFYQSTENTLFVGRECLASVGRFVLLLIHCLAHITTGDFNQDCNPKFLGSFYEGLKAYFKEAFSTTLQMSAVSWDSKFDQSLSAVLLKEQSTSEKERDLLSKLIERKCEPCLSRQSSEEYIKKSNELLLFTNMEHFLKSILSEEQQILVTPRAGLHGKEKI", "length": 939, "header": "tr|A0A9J7FX99-1|A0A9J7FX99_CRIGR Isoform 1 of Uncharacterized protein LOC103160929 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160929 PE=4 SV=1 CANONICAL=A0A9J7FX99-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FX99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX99" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160929", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160929", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 338, "end_pos": 340 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXC5-1", "uniprot_ac": "A0A9J7FXC5", "uniprot_id": "A0A9J7FXC5_CRIGR", "mass": { "chemical_mass": 13606.0, "monoisotopic_mass": 13606.0 }, "refseq": { "ac": "XP_003502494", "name": "UPF0545 protein C22orf39 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502494" }, "gene_names": [ { "name": "CUNH22orf39", "type": "recommended", "evidence": [ { "id": "A0A9J7FXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5" } ] }, { "name": "CUNH22orf39", "type": "synonym", "evidence": [ { "id": "XP_003502494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502494" } ] } ], "protein_names": [ { "name": "Synaptic plasticity regulator PANTS", "type": "recommended", "evidence": [ { "id": "A0A9J7FXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5/entry#names_and_taxonomy" } ] }, { "name": "Plasticity-associated neural transcript short", "type": "synonym", "evidence": [ { "id": "A0A9J7FXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5/entry#names_and_taxonomy" } ] }, { "name": "UPF0545 protein C22orf39 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003502494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502494" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613898.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003502494.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502494", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502494" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH22orf39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772934", "url": "https://www.ncbi.nlm.nih.gov/gene/100772934", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772934", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772934", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXC5", "url": "https://www.orthodb.org/?gene=A0A9J7FXC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28052", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28052", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28052:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28052:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502494", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502494", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSVTRGLDMAVAGSWQPPRPCEVYRSEWELCRSARHILHHYYVHGERPDCRQWLRDLASCREWEESRSPEAQRSLCESEQARVQAAQKHTLVWTLRQRPPADWNLPLPQEKDK", "length": 115, "header": "tr|A0A9J7FXC5-1|A0A9J7FXC5_CRIGR Isoform 1 of Synaptic plasticity regulator PANTS OS=Cricetulus griseus OX=10029 GN=CUNH22orf39 PE=3 SV=1 CANONICAL=A0A9J7FXC5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5/entry#A0A9J7FXC5-1", "sequence": { "sequence": "MSLSVTRGLDMAVAGSWQPPRPCEVYRSEWELCRSARHILHHYYVHGERPDCRQWLRDLASCREWEESRSPEAQRSLCESEQARVQAAQKHTLVWTLRQRPPADWNLPLPQEKDK", "length": 115, "header": "tr|A0A9J7FXC5-1|A0A9J7FXC5_CRIGR Isoform 1 of Synaptic plasticity regulator PANTS OS=Cricetulus griseus OX=10029 GN=CUNH22orf39 PE=3 SV=1 CANONICAL=A0A9J7FXC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC5/entry#A0A9J7GX56-1", "sequence": { "sequence": "MSLSVTRGLDMAVAGSWQPPRPCEVYRSEWELCRSARHILHHYYVHGERPDCRQWLRDLASCREWEESRSPEAQALDGYAWCLWEAPGHSGQGSHWPGHHVHPHQAAE", "length": 108, "header": "tr|A0A9J7GX56-1|A0A9J7GX56_CRIGR Computationally mapped isoform of Synaptic plasticity regulator PANTS OS=Cricetulus griseus OX=10029 GN=CUNH22orf39 PE=3 SV=1 CANONICAL=A0A9J7FXC5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267421", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267421" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107977389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "107977389", "url": "https://www.ncbi.nlm.nih.gov/gene/107977389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107977389", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977389", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXF7", "url": "https://www.orthodb.org/?gene=A0A9J7FXF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF14048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16564", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16564", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267421", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267421", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQHLQDKRIQLAQEKVKAKHRRRATPVFPLRMTSCIFPRPVTRITSHAKNIIKCRKMLEEMVEKPRPLCAFRRLHQYLMEDSKGKIQAEAKVQSGLSSLHTSPHFPSIPPLSSEKMAQGTVELCPSSFSQEVTSSVALQLLPSLSSRVVTTTDIRRQAQKVNRARKRLAALLEADRLAGQAENMS", "length": 186, "header": "tr|A0A9J7FXF7-1|A0A9J7FXF7_CRIGR Isoform 1 of Methyl-CpG-binding domain protein 3-like 3 OS=Cricetulus griseus OX=10029 GN=LOC107977389 PE=4 SV=1 CANONICAL=A0A9J7FXF7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF7/entry#A0A9J7FXF7-1", "sequence": { "sequence": "MPQHLQDKRIQLAQEKVKAKHRRRATPVFPLRMTSCIFPRPVTRITSHAKNIIKCRKMLEEMVEKPRPLCAFRRLHQYLMEDSKGKIQAEAKVQSGLSSLHTSPHFPSIPPLSSEKMAQGTVELCPSSFSQEVTSSVALQLLPSLSSRVVTTTDIRRQAQKVNRARKRLAALLEADRLAGQAENMS", "length": 186, "header": "tr|A0A9J7FXF7-1|A0A9J7FXF7_CRIGR Isoform 1 of Methyl-CpG-binding domain protein 3-like 3 OS=Cricetulus griseus OX=10029 GN=LOC107977389 PE=4 SV=1 CANONICAL=A0A9J7FXF7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXF8-1", "uniprot_ac": "A0A9J7FXF8", "uniprot_id": "A0A9J7FXF8_CRIGR", "mass": { "chemical_mass": 122221.0, "monoisotopic_mass": 122221.0 }, "refseq": { "ac": "XP_027270583", "name": "IQ domain-containing protein H", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270583" }, "gene_names": [ { "name": "Iqch", "type": "recommended", "evidence": [ { "id": "A0A9J7FXF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF8" } ] }, { "name": "Iqch", "type": "synonym", "evidence": [ { "id": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270583" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXF8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iqch", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXF8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23767", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23767", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"MEAESPASEGVTEPQALGAMGTIGSLLSRIRGKLFTCVDFQLCTTMGNCSVDQAGLEFTDLPICLLNAGIRGEHHCTQPKRDILKTIALGQMLSLCICGTAITSQYLAEKYKVNTPMLQSFINYCLLFLIYTVMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIAKIHWDWRIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTAEPSESSVPPVTNIGIDNLGLKLEESGVSETHSAVL", "length": 419, "header": "tr|A0A9J7FXH2-1|A0A9J7FXH2_CRIGR Isoform 1 of Solute carrier family 35 member F2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc35f2 PE=3 SV=1 CANONICAL=A0A9J7FXH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2/entry#A0A9J7FYJ7-1", "sequence": { "sequence": "MEAESPASEGVTEPQALGAMGTIGSLLSRIRGKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYKVNTPMLQSFINYCLLFLIYTVMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIAKIHWDWRIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTAEPSESSVPPVTNIGIDNLGLKLEESGVSETHSAVL", "length": 375, "header": "tr|A0A9J7FYJ7-1|A0A9J7FYJ7_CRIGR Computationally mapped isoform of Solute carrier family 35 member F2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc35f2 PE=3 SV=1 CANONICAL=A0A9J7FXH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2/entry#A0A9J7GXB6-1", "sequence": { "sequence": "MLSLCICGTAITSQYLAEKYKVNTPMLQSFINYCLLFLIYTVMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIAKIHWDWRIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTAEPSESSVPPVTNIGIDNLGLKLEESGVSETHSAVL", "length": 328, "header": "tr|A0A9J7GXB6-1|A0A9J7GXB6_CRIGR Computationally mapped isoform of Solute carrier family 35 member F2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Slc35f2 PE=3 SV=1 CANONICAL=A0A9J7FXH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2/entry#A0A9J7K4Q1-1", "sequence": { "sequence": "MPLFSTDILKTIALGQMLSLCICGTAITSQYLAEKYKVNTPMLQSFINYCLLFLIYTVMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIAKIHWDWRIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTAEPSESSVPPVTNIGIDNLGLKLEESGVSETHSAVL", "length": 344, "header": "tr|A0A9J7K4Q1-1|A0A9J7K4Q1_CRIGR Computationally mapped isoform of Solute carrier family 35 member F2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Slc35f2 PE=3 SV=1 CANONICAL=A0A9J7FXH2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769891", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769891", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXI4-1", "uniprot_ac": "A0A9J7FXI4", "uniprot_id": "A0A9J7FXI4_CRIGR", "mass": { "chemical_mass": 26976.0, "monoisotopic_mass": 26976.0 }, "refseq": { "ac": "XP_007649234", "name": "transmembrane protein PVRIG", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649234" }, "gene_names": [ { "name": "Pvrig", "type": "recommended", "evidence": [ { "id": "A0A9J7FXI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4" } ] }, { "name": "Pvrig", "type": "synonym", "evidence": [ { "id": "XP_007649234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649234" } ] } ], "protein_names": [ { "name": "Transmembrane protein PVRIG", "type": "synonym", "evidence": [ { "id": "A0A9J7FXI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein PVRIG", "type": "synonym", "evidence": [ { "id": "XP_007649234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649234" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649234" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pvrig", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4", "locus": {} } ], "crossref": [ { "id": "103161366", "url": "https://www.ncbi.nlm.nih.gov/gene/103161366", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR034452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103161366", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161366", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXI4", "url": "https://www.orthodb.org/?gene=A0A9J7FXI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39220", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39220", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39220:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39220:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649234", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWAQALVLFSSLLTLCTSEGSPKVWVQVQMEATKLLSLSLSIHCGVLGTDLISLVTVSWEGSVDAPRTKLAVLHPELGTQLWVPDSKAGWETSNSVSLTLTLEQSKARNSLANTTFCCEFVTFPHGSRVACGDLHSSEPGLSALTLQGDLARILGTLGFLLLGFIFVLYLLWRQKRWCFSKSQPSATSTQAQRQTQLPHVASTRGSFVSTENGLYALAGKRLPHTVPNILASTDCLEHSSLERCSGVE", "length": 249, "header": "tr|A0A9J7FXI4-1|A0A9J7FXI4_CRIGR Isoform 1 of Transmembrane protein PVRIG OS=Cricetulus griseus OX=10029 GN=Pvrig PE=4 SV=1 CANONICAL=A0A9J7FXI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4/entry#A0A9J7FXI4-1", "sequence": { "sequence": "MAWAQALVLFSSLLTLCTSEGSPKVWVQVQMEATKLLSLSLSIHCGVLGTDLISLVTVSWEGSVDAPRTKLAVLHPELGTQLWVPDSKAGWETSNSVSLTLTLEQSKARNSLANTTFCCEFVTFPHGSRVACGDLHSSEPGLSALTLQGDLARILGTLGFLLLGFIFVLYLLWRQKRWCFSKSQPSATSTQAQRQTQLPHVASTRGSFVSTENGLYALAGKRLPHTVPNILASTDCLEHSSLERCSGVE", "length": 249, "header": "tr|A0A9J7FXI4-1|A0A9J7FXI4_CRIGR Isoform 1 of Transmembrane protein PVRIG OS=Cricetulus griseus OX=10029 GN=Pvrig PE=4 SV=1 CANONICAL=A0A9J7FXI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:103161366", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161366", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of T cell receptor signaling pathway", "id": "GO:0050860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050860", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027269240.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269240" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835459", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835459", "url": "https://www.ncbi.nlm.nih.gov/gene/113835459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835459", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835459", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXP3", "url": "https://www.orthodb.org/?gene=A0A9J7FXP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269240", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAAFCIKENEGRAQQSPQRISRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPSALSIIHCPGHQKGDSLEARGNRRADLAAREAALTTDTTSLLALEPTNDRPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPAHLQALQLVQREIWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPHWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 353, "header": "tr|A0A9J7FXP3-1|A0A9J7FXP3_CRIGR Isoform 1 of Uncharacterized protein LOC113835459 OS=Cricetulus griseus OX=10029 GN=LOC113835459 PE=4 SV=1 CANONICAL=A0A9J7FXP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3/entry#A0A9J7FXP3-1", "sequence": { "sequence": "MEAAFCIKENEGRAQQSPQRISRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPSALSIIHCPGHQKGDSLEARGNRRADLAAREAALTTDTTSLLALEPTNDRPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPAHLQALQLVQREIWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPHWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 353, "header": "tr|A0A9J7FXP3-1|A0A9J7FXP3_CRIGR Isoform 1 of Uncharacterized protein LOC113835459 OS=Cricetulus griseus OX=10029 GN=LOC113835459 PE=4 SV=1 CANONICAL=A0A9J7FXP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835459", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835459", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FXP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXP3" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 99, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXR1-1", "uniprot_ac": "A0A9J7FXR1", "uniprot_id": "A0A9J7FXR1_CRIGR", "mass": { "chemical_mass": 39627.0, "monoisotopic_mass": 39627.0 }, "refseq": { "ac": "XP_027269281", "name": "LOW QUALITY PROTEIN: uncharacterized protein LOC103164145", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269281" }, "gene_names": [ { "name": "LOC103164145", "type": "recommended", "evidence": [ { "id": "A0A9J7FXR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXR1" } ] }, { "name": "LOC103164145", "type": "synonym", "evidence": [ { "id": "XP_027269281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269281" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: uncharacterized protein LOC103164145", "type": "synonym", "evidence": [ { "id": "XP_027269281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269281" }, { "id": "A0A9J7FXR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXR1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269196", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269196" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769986", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7", "locus": {} } ], "crossref": [ { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769986", "url": "https://www.ncbi.nlm.nih.gov/gene/100769986", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769986", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769986", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXS7", "url": "https://www.orthodb.org/?gene=A0A9J7FXS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF541", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF541", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269196", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269196", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPLHQYXQNVFCRFKFKSFQCSLAFIFAIEEINRNPHLLPNTSLGYDFYNVQRSEWDFLREAFLWLTGMELNIPNYTCRRENKAVALLTGVSWATSARIGRLLNLYKYPQLSFGPFDSILSDKGQFSSLYQTAPKDTTLSLGIVSLMIHFSWSWVGLILIDNHKGIQILSDFREEFHRNKICIAFIKLISENMIYSDYVDEATLRLILMSSANVVIFYDDSESAHGVFLYPMYVLKTWKIWVMTSQMDFGGIEDPVVFDSFHGTIYFVHHHDEISDFRKFMQTYTPSKYPEDHYLALLWSIYFNCSFSLPDCKILGNCLPNASLELLPSKMWNMEMTEEAYNIYNSVYAVAHSLHEMSVKQIQIKTHENGVGNANHLELHYFLKQIHFKNGAGHDVVLDSQMKLDEEYDIFNVWNFPPGLRQNMKVGTFSLKAPQGQQLFLSDHMIQWDTGFTELPRSVCSKSCVPGFRKSPQEGQAICCYDCIPCPLNEISNKTDMDNCVKCPESHYANVQQTHCLEKAVTFLSYEDPLGMALSCIALGCSVLTVGVLGVFVKHHHTPIVKANNQALTYILLITLTFCFLCPLLFIGHPNTVTCILQQSTFAVLFTVALSTVLAKTLTVVLAFKSTVPGRRMRWIMISRAPNFIIPVCTLIQLMFCGIWLSTSPPFVDSDVYTEHGHIIIICNKGSTIAFHSVLGYLCSMALGNYTLAYLSRNLPDTFNEAKLMTFSMLVFFSVWVTFLPVYHSTKGKVMLAMEVFAILASSAGLVGFIFAPKCYIIFLRPERNSLCCVKSKTYSTRKF", "length": 801, "header": "tr|A0A9J7FXS7-1|A0A9J7FXS7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: vomeronasal type-2 receptor 116 OS=Cricetulus griseus OX=10029 GN=LOC100769986 PE=3 SV=1 CANONICAL=A0A9J7FXS7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7/entry#A0A9J7FXS7-1", "sequence": { "sequence": "MGPLHQYXQNVFCRFKFKSFQCSLAFIFAIEEINRNPHLLPNTSLGYDFYNVQRSEWDFLREAFLWLTGMELNIPNYTCRRENKAVALLTGVSWATSARIGRLLNLYKYPQLSFGPFDSILSDKGQFSSLYQTAPKDTTLSLGIVSLMIHFSWSWVGLILIDNHKGIQILSDFREEFHRNKICIAFIKLISENMIYSDYVDEATLRLILMSSANVVIFYDDSESAHGVFLYPMYVLKTWKIWVMTSQMDFGGIEDPVVFDSFHGTIYFVHHHDEISDFRKFMQTYTPSKYPEDHYLALLWSIYFNCSFSLPDCKILGNCLPNASLELLPSKMWNMEMTEEAYNIYNSVYAVAHSLHEMSVKQIQIKTHENGVGNANHLELHYFLKQIHFKNGAGHDVVLDSQMKLDEEYDIFNVWNFPPGLRQNMKVGTFSLKAPQGQQLFLSDHMIQWDTGFTELPRSVCSKSCVPGFRKSPQEGQAICCYDCIPCPLNEISNKTDMDNCVKCPESHYANVQQTHCLEKAVTFLSYEDPLGMALSCIALGCSVLTVGVLGVFVKHHHTPIVKANNQALTYILLITLTFCFLCPLLFIGHPNTVTCILQQSTFAVLFTVALSTVLAKTLTVVLAFKSTVPGRRMRWIMISRAPNFIIPVCTLIQLMFCGIWLSTSPPFVDSDVYTEHGHIIIICNKGSTIAFHSVLGYLCSMALGNYTLAYLSRNLPDTFNEAKLMTFSMLVFFSVWVTFLPVYHSTKGKVMLAMEVFAILASSAGLVGFIFAPKCYIIFLRPERNSLCCVKSKTYSTRKF", "length": 801, "header": "tr|A0A9J7FXS7-1|A0A9J7FXS7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: vomeronasal type-2 receptor 116 OS=Cricetulus griseus OX=10029 GN=LOC100769986 PE=3 SV=1 CANONICAL=A0A9J7FXS7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769986", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769986", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FXS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXS7" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 531, "end_pos": 795, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 305, "end_pos": 307 }, { "start_pos": 322, "end_pos": 324 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 494, "end_pos": 496 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZR5-1", "uniprot_ac": "A0A9J7FZR5", "uniprot_id": "A0A9J7FZR5_CRIGR", "mass": { "chemical_mass": 107855.0, "monoisotopic_mass": 107855.0 }, "refseq": { "ac": "XP_027270787", "name": "uncharacterized protein C15orf39 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270787" }, "gene_names": [ { "name": "CUNH15orf39", "type": "recommended", "evidence": [ { "id": "A0A9J7FZR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5" } ] }, { "name": "CUNH15orf39", "type": "synonym", "evidence": [ { "id": "XP_027270787", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270787" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C15orf39 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FZR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C15orf39 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027270787", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270787" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270787", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270787" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH15orf39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5", "locus": {} } ], "crossref": [ { "id": "100765178", "url": "https://www.ncbi.nlm.nih.gov/gene/100765178", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765178", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765178", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZR5", "url": "https://www.orthodb.org/?gene=A0A9J7FZR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28422:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28422:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270787", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270787", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEKRPLGPLGPVMYGKLPRLEPDPGPGHGLPLSAGNQDSCNYKGAYFSCPIGGTSKAGSERLASWTPYPPLYPTGVAGSPIRADNLLTNCLLYRPPTEGSEKIQDSSELLPFGPQAHAYPGPPLAAPKPVYRSPLCYGLSTCLGDGGAKRPLDVDWTLVTGPLLPSADPPCSLAPAAGKGQPLDGTFLRGLPTGGPGKDASLTFPPCQAILEKYRAIHSTSFLASKYPGPYSGDPKQAIAEGPSSPWTQLAQPLGPSCQDAVPAHYPLPPPPQALPCPPSCRHPEKQGSYGPLLPLPPLGAHKGAGYQAGGLGSPYLRQQASQTPYLPPVGIDTYSYSSAPLPAPSPGLKLEPPLAPRCPLDFVPQNLGFPYARDDLSLYGASPGLGGAPPSHSQNSVQPVPQPSAFQRTCQPLPASQPCSEPVRPAEKPPEAQEKTWLPSCRKEQLQPRPEERPGVPIVIRDSPVPRTSPALHPCAKERQSVPQKGARPPSSPPMPVIDNVFSLAPYRDYLDVQTPEPTAEQDSAPTTNKSQDKDCKGTLPVQDGTSRPHCSLREEVALDLSVKKSMAEAVPVKVPSPEVHGKPTEAVDRPDMENPVSGLPGLKKMVTEISEVATEASPRTNFHSSVAFMFRKFKILRPAPLAAAIVPSPPTPIAAPAPNPPSVPMGLQILTQPLPVACFNLALPSPPAIAVASPAPASAPTPSPAPAPAPASGPAPVTAQVSTAASADSLEQHFTGLHTSLCDAISGSVAHSPPEKLREWLETTGPWGRAAWQDGQGVQGLLGKLLSQLQRFLCTQQCPFPHVVRAGAIFVPIHLVKERLFPKLPPASVDHVLQEHRVELRPTTLSEERALRERALHGCTSRMLKLLALRQLPDIYPDLLGLQWHDCVRRQLGGFNTEARTLSPSESTVTRDEPESQALARKSPTPKVKKPGRKPPTPGPEKAERTTGEGSRDPSSSSGASTSPPGPTLRARFRSLLETAWLNGVALPTWGHKASGPDRPSPHPQLLGSQSHHL", "length": 1017, "header": "tr|A0A9J7FZR5-1|A0A9J7FZR5_CRIGR Isoform 1 of Uncharacterized protein C15orf39 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH15orf39 PE=4 SV=1 CANONICAL=A0A9J7FZR5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5/entry#A0A9J7FXU0-1", "sequence": { "sequence": 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Uncharacterized protein C15orf39 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH15orf39 PE=4 SV=1 CANONICAL=A0A9J7FZR5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR5/entry#A0A9J7FZR5-1", "sequence": { "sequence": 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"length": 1017, "header": "tr|A0A9J7FZR5-1|A0A9J7FZR5_CRIGR Isoform 1 of Uncharacterized protein C15orf39 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH15orf39 PE=4 SV=1 CANONICAL=A0A9J7FZR5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 704, "start_aa": "Thr", "end_pos": 704, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr704", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 940, "start_aa": "Thr", "end_pos": 940, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr940", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXU0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765178", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765178", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 704, 940 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 531, "end_pos": 533 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXV4-1", "uniprot_ac": "A0A9J7FXV4", "uniprot_id": "A0A9J7FXV4_CRIGR", "mass": { "chemical_mass": 59135.0, "monoisotopic_mass": 59135.0 }, "refseq": { "ac": "XP_027270872", "name": "gliomedin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270872" }, "gene_names": [ { "name": "Gldn", "type": "recommended", "evidence": [ { "id": "A0A9J7FXV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4" } ] }, { "name": "Gldn", "type": "synonym", "evidence": [ { "id": "XP_027270872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270872" } ] } ], "protein_names": [ { "name": "Gliomedin", "type": "synonym", "evidence": [ { "id": "A0A9J7FXV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4/entry#names_and_taxonomy" } ] }, { "name": "gliomedin", "type": "synonym", "evidence": [ { "id": "XP_027270872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270872" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270872", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270872" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gldn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXV4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752888", "url": "https://www.ncbi.nlm.nih.gov/gene/100752888", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752888", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752888", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXV4", "url": "https://www.orthodb.org/?gene=A0A9J7FXV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192:SF85", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192:SF85", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270872", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270872", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRAAERGKGASGWGLRGALVAVALLSALNAAGTVFVLCQWRGLSAALRALEAQRVREQREDSALRAFLAELSRAPGQVPESPQDPASAARNKRSHSGEPAPHIRAESQDMMMMMTYSMVPIRVMVDLCNSTKGICLTGPPGLPGPPGVDGLPGHNGSDGQPGLQGPKGEKGANGKRGKMGLPGATGNPGERGEKGDAGELGSPGNEGPPGQKGEKGDKGDVSNDVLLTGAKGDQGPPGPPGPPGPPGPPGTRRSKGPRQPNMFNNQCPGETCAVPNDDTLVGKVDEKTNERHSPQTETMISSIGNPARVLKVRETFGTWIRESANKSDERIWVTEHFSGIMVKEFKDLPALLNSSFTLIHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLENALYFDRKYLFANSKTYFNIAVDEKGVWIIYASSVDGSSILVAQLDERTFSVLQHINTTYPKSKAGNAFIAQGILYVTDTKDTRVTFAFDLFRGKQIDANFDLRTSQAVLAMLSYNMRDQHLYSWEDGHLMLYPVWFSAAAASQ", "length": 548, "header": "tr|A0A9J7FXV4-1|A0A9J7FXV4_CRIGR Isoform 1 of Gliomedin OS=Cricetulus griseus OX=10029 GN=Gldn PE=4 SV=1 CANONICAL=A0A9J7FXV4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4/entry#A0A9J7FXV4-1", "sequence": { "sequence": "MTRAAERGKGASGWGLRGALVAVALLSALNAAGTVFVLCQWRGLSAALRALEAQRVREQREDSALRAFLAELSRAPGQVPESPQDPASAARNKRSHSGEPAPHIRAESQDMMMMMTYSMVPIRVMVDLCNSTKGICLTGPPGLPGPPGVDGLPGHNGSDGQPGLQGPKGEKGANGKRGKMGLPGATGNPGERGEKGDAGELGSPGNEGPPGQKGEKGDKGDVSNDVLLTGAKGDQGPPGPPGPPGPPGPPGTRRSKGPRQPNMFNNQCPGETCAVPNDDTLVGKVDEKTNERHSPQTETMISSIGNPARVLKVRETFGTWIRESANKSDERIWVTEHFSGIMVKEFKDLPALLNSSFTLIHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLENALYFDRKYLFANSKTYFNIAVDEKGVWIIYASSVDGSSILVAQLDERTFSVLQHINTTYPKSKAGNAFIAQGILYVTDTKDTRVTFAFDLFRGKQIDANFDLRTSQAVLAMLSYNMRDQHLYSWEDGHLMLYPVWFSAAAASQ", "length": 548, "header": "tr|A0A9J7FXV4-1|A0A9J7FXV4_CRIGR Isoform 1 of Gliomedin OS=Cricetulus griseus OX=10029 GN=Gldn PE=4 SV=1 CANONICAL=A0A9J7FXV4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752888", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752888", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV4" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV4", "url": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267729" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C2cd2l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXV9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXV9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21683", "database": "CDD", "categories": [ "Protein Classification" ] 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"categories": [ "Protein Classification" ] }, { "id": "PTHR21119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21119:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LZW2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LZW2-1", "url": 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"MDPGWGQRDVGWAALLVLFAASLVTVLGWLLQYARGLWLSRAGGGQDSRPTSASEPGGSLRELGVWRSLLRLRATRTGASEEAGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQITFEEVPQLPPRASISHVTCKDQSERTMVLHCQLSAEEVCFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPELSLMVLPKLQTRERDEEPTELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPMTSQAQPPIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPMRAGPEVEWTEDLALDLGPQSRELTLKVLRSSSCGDAELLGQATLPVGSPSKPLSRRQVCPLTPGPGKSLSPAATMTAELHYEQGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRIDGKLDSPSRSPSKVEVTEKMTTVLSESSGPSNASHSSSPGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQDDTGTSGGPSSPPSDPSATSPGPPDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPNPQL", "length": 707, "header": "tr|A0A9J7FXV9-1|A0A9J7FXV9_CRIGR Isoform 1 of Phospholipid transfer protein C2CD2L isoform X1 OS=Cricetulus griseus OX=10029 GN=C2cd2l PE=4 SV=1 CANONICAL=A0A9J7FXV9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZW2-1", "url": 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CANONICAL=A0A9J7FXV9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9/entry#A0A9J7FXV9-1", "sequence": { "sequence": "MDPGWGQRDVGWAALLVLFAASLVTVLGWLLQYARGLWLSRAGGGQDSRPTSASEPGGSLRELGVWRSLLRLRATRTGASEEAGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQITFEEVPQLPPRASISHVTCKDQSERTMVLHCQLSAEEVCFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPELSLMVLPKLQTRERDEEPTELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPMTSQAQPPIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPMRAGPEVEWTEDLALDLGPQSRELTLKVLRSSSCGDAELLGQATLPVGSPSKPLSRRQVCPLTPGPGKSLSPAATMTAELHYEQGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRIDGKLDSPSRSPSKVEVTEKMTTVLSESSGPSNASHSSSPGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQDDTGTSGGPSSPPSDPSATSPGPPDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPNPQL", "length": 707, "header": "tr|A0A9J7FXV9-1|A0A9J7FXV9_CRIGR Isoform 1 of Phospholipid transfer protein C2CD2L isoform X1 OS=Cricetulus griseus OX=10029 GN=C2cd2l PE=4 SV=1 CANONICAL=A0A9J7FXV9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 673, "start_aa": "Thr", "end_pos": 673, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr673", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757251", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757251", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasmic side of apical plasma membrane", "id": "GO:0098592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" }, { "name": "cortical endoplasmic reticulum", "id": "GO:0032541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032541", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" }, { "name": "endoplasmic reticulum-plasma membrane contact site", "id": "GO:0140268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140268", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of insulin secretion involved in cellular response to glucose stimulus", "id": "GO:0035774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035774", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" }, { "name": "phosphatidylinositol transfer activity", "id": "GO:0008526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008526", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" }, { "name": "insulin binding", "id": "GO:0043559", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043559", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FXV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV9" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 268, "end_pos": 389, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 673 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 490, "end_pos": 492 }, { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FYZ8-1", "uniprot_ac": "A0A9J7FYZ8", "uniprot_id": "A0A9J7FYZ8_CRIGR", "mass": { "chemical_mass": 115681.0, "monoisotopic_mass": 115681.0 }, "refseq": { "ac": "XP_027271671", "name": "fibrosin-1-like protein isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271671" }, "gene_names": [ { "name": "Fbrsl1", "type": "recommended", "evidence": [ { "id": "A0A9J7FYZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8" } ] }, { "name": "Fbrsl1", "type": "synonym", "evidence": [ { "id": "XP_027271671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271671" } ] } ], "protein_names": [ { "name": "Fibrosin-1-like protein isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7FYZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#names_and_taxonomy" } ] }, { "name": "fibrosin-1-like protein isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027271671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271671" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271671" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbrsl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FYZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FYZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774092", "url": "https://www.ncbi.nlm.nih.gov/gene/100774092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774092", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FYZ8", "url": "https://www.orthodb.org/?gene=A0A9J7FYZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14429", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14429", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14429:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14429:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271671", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYX5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G387", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G387", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G387-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G387-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JN30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JN30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR05", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K654", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K654-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K654-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7L1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1077, "header": "tr|A0A9J7FYZ8-1|A0A9J7FYZ8_CRIGR Isoform 1 of Fibrosin-1-like protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FXW7-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNVSDPYRTAVRMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 998, "header": "tr|A0A9J7FXW7-1|A0A9J7FYZ8_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FYH2-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIGTWSQAPLLPPPLGPHVASGHHGLACRPRECQFDKFSPKLDSPYFRHSNTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1000, "header": "tr|A0A9J7FYH2-1|A0A9J7FYH2_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X14 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FYR0-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1054, "header": "tr|A0A9J7FYR0-1|A0A9J7FYR0_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FYX5-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1045, "header": "tr|A0A9J7FYX5-1|A0A9J7FYX5_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X9 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FYZ8-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1077, "header": "tr|A0A9J7FYZ8-1|A0A9J7FYZ8_CRIGR Isoform 1 of Fibrosin-1-like protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7FZG1-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 998, "header": "tr|A0A9J7FZG1-1|A0A9J7FZG1_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X15 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7G1Z2-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIGTWSQAPLLPPPLGPHVASGHHGLACRPRECQFDKFSPKLDSPYFRHSNVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 977, "header": "tr|A0A9J7G1Z2-1|A0A9J7G1Z2_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X17 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G387-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7G387-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1067, "header": "tr|A0A9J7G387-1|A0A9J7G387_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7JI72-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1045, "header": "tr|A0A9J7JI72-1|A0A9J7JI72_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X10 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JN30-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7JN30-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1053, "header": "tr|A0A9J7JN30-1|A0A9J7JN30_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7JPW7-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1022, "header": "tr|A0A9J7JPW7-1|A0A9J7JPW7_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X12 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7JR05-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLSRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIGTWSQAPLLPPPLGPHVASGHHGLACRPRECQFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1032, "header": "tr|A0A9J7JR05-1|A0A9J7JR05_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X11 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7JRJ1-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQVCSPEGGPLPASPWHQNGPAQHQQQQQPSQPSQPQGPLPAPGQPCQPQRPPLGQRAWPHGSLLGLRQPCQPRRPLLGPGQHHRPQHLLPAPDQLSQTQRSRLAQSRRPLLALPGSRQRLRSIQTPWHRYPLRSLLTSCHRCRSLLTVWHRCRPLQSWTTLCLCDQPCRAASGQPCQPPQSLLAQCQQCQPPGTLTLQPRRHPTSCLSGQCCCPQQALLAPRQQSQPHRSLLGQSSCPQQSPVGPNQPQQLVEGPEQSSPPKPALLSLRQSQQQKCPRLSPEQSHLPKQPLMGPKKPLRSLLGPDQPRKPQPLLPLPDRPSLLGQPGLAPQPLLRPLCQLRRQSLLGLVPARQPPPSILGHPFRPLRTQWTRHSAPGVARQAPSVSPGA", "length": 551, "header": "tr|A0A9J7JRJ1-1|A0A9J7JRJ1_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X18 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K654-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7K654-1", "sequence": { "sequence": 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"length": 1021, "header": "tr|A0A9J7K654-1|A0A9J7K654_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X13 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ8/entry#A0A9J7K7L1-1", "sequence": { "sequence": "MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLHGAPPQRPTPLRAARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWDQRLVKKPRESENCPSAELSENRQPLEVGSPGQDAEPTCDEGTRKVPLQPSQQMKVTMARGGDRNSDDDSVLEASSSQHSSSRDQLSDSSAQAVSGRGYSCDSESGVDDKASVGSEKLFAPAPDKGSGRGEKSEAKAGTVPKVSGLERSRELSTESFLPATAPAPSGPPPGAPASPLVKREAPIVPHHLPQPQLTQQHRGSLPTHVPLSLGAFVGPGSGQVAPNSLHLHSLRSSSTVSGTPLGLTKHVTLSPHGPGPHLSTSHLALRSQAQHQHHTAAMFAAPPTLPPPPALPASSLVIPGHPADASLLISFNQPIMYCQPHSGILIDHELLRQELNTRFLVQNAERPGASLGPGALLRAEFHQHTHQHTHQHTHQHTHQHQHTFAPFAGLPPTPLMPPTAPSPFDKFSPKLDSPYFRHSNLFPPFPPIGPGLPTLIVHRGPFGSLQGAFQPKTSNSIEITGRASAVHTLLQKAPGVSDPYRTAVRKPGKWCAVHVQIAWQIYHQQQKMKMQLDPHKLEVGTKLDLFSRPPAPGMFSGFHYPQDLARPLFSSTGATHPTANPFGPSAHHGSFLPTGHLTDPFGRSSTFGGLGSLSSHAFGGLGSHALTPGSSIFAPKEGTALLGLPSPHDTWNRLHRAPPSFPTPPPWPKPVDTERFSALTNHDREPDKGQEEHDRDLLEKTRLLSHGSPAAPVGHPISSLLQRGPGELGRPGILTEREAEPRIKESHSPGKEDGAKLAVRPPSPYCKAALGDCLRLAGLLGRESGKQTPERPQGDVKVKEERREEETPELTGVTVHSTATHLGLGTSGFVWDPPRDSYRGLELPRRAFPAPPPAAGPAPFELSERAYRDREPHDYSPERLREVRREELEHAHTHAPDPEATTTAPAAALLPAMHYPRLATGALHGALLARTPPAAPALGAPPPLVAAGGVSTPPARPRTTPLALGPGEGRDYSPAACNPPEVEAR", "length": 1076, "header": "tr|A0A9J7K7L1-1|A0A9J7K7L1_CRIGR Computationally mapped isoform of Fibrosin-1-like protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Fbrsl1 PE=4 SV=1 CANONICAL=A0A9J7FYZ8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 755, "start_aa": "Thr", "end_pos": 755, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr755", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXW7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXW7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774092", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774092", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 755 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FXX6-1", "uniprot_ac": "A0A9J7FXX6", "uniprot_id": "A0A9J7FXX6_CRIGR", "mass": { "chemical_mass": 28983.0, "monoisotopic_mass": 28983.0 }, "refseq": { "ac": "XP_016834001", "name": "uncharacterized protein LOC100764284 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834001" }, "gene_names": [ { "name": "LOC100764284", "type": "recommended", "evidence": [ { "id": "A0A9J7FXX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6" } ] }, { "name": "LOC100764284", "type": "synonym", "evidence": [ { "id": "XP_016834001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834001" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC100764284 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FXX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC100764284 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016834001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834001" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614494.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834001", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834001" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764284", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXX6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764284", "url": "https://www.ncbi.nlm.nih.gov/gene/100764284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100764284", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764284", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_016834001", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834001", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIQGPSCREPLGIVGSGGGKWEAFPLVLRLVPGGLRAPRMGQILDDLSSLRRGVRLAGREEGEWGRVEGPFQDFVSALSSHQLDEELDPDPGPTTCGFFSPSVDRGVPMRLLAHTSELGEGDWDTSIRAAGLYWSWRLGVKAVGTLELWSIQLQTGSLLGQEHFPWEAGHLCPGWEEQAIMHTWNPCRLFTVPSAASPWLQGWFLPLQKQACRMWGSLSQAGVGDICRKILSSPVEEPGPCWASSSSPQGFPDPPAASSKSTKVLGL", "length": 267, "header": "tr|A0A9J7FXX6-1|A0A9J7FXX6_CRIGR Isoform 1 of Uncharacterized protein LOC100764284 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100764284 PE=4 SV=1 CANONICAL=A0A9J7FXX6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXX6/entry#A0A9J7FXX6-1", "sequence": { "sequence": "MIQGPSCREPLGIVGSGGGKWEAFPLVLRLVPGGLRAPRMGQILDDLSSLRRGVRLAGREEGEWGRVEGPFQDFVSALSSHQLDEELDPDPGPTTCGFFSPSVDRGVPMRLLAHTSELGEGDWDTSIRAAGLYWSWRLGVKAVGTLELWSIQLQTGSLLGQEHFPWEAGHLCPGWEEQAIMHTWNPCRLFTVPSAASPWLQGWFLPLQKQACRMWGSLSQAGVGDICRKILSSPVEEPGPCWASSSSPQGFPDPPAASSKSTKVLGL", "length": 267, "header": "tr|A0A9J7FXX6-1|A0A9J7FXX6_CRIGR Isoform 1 of Uncharacterized protein LOC100764284 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100764284 PE=4 SV=1 CANONICAL=A0A9J7FXX6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 94, "start_aa": "Thr", "end_pos": 94, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr94", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"type": "recommended", "evidence": [ { "id": "A0A9J7FXY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4" } ] }, { "name": "Znf3", "type": "synonym", "evidence": [ { "id": "XP_027271034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271034" } ] } ], "protein_names": [ { "name": "Zinc finger protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FXY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027271034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271034" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271034" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FXY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FXY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774228", "url": "https://www.ncbi.nlm.nih.gov/gene/100774228", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774228", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774228", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FXY4", "url": "https://www.orthodb.org/?gene=A0A9J7FXY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FY40", "url": "https://www.orthodb.org/?gene=A0A9J7FY40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271034", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSFYEKHCLLTQTLAFPNLLPAELGDQRPEHLTLPMETQADPASQEPPPLLESALSSSKVPSFPDKDGLGHEMLAAALLKAKSQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 483, "header": "tr|A0A9J7FXY4-1|A0A9J7FXY4_CRIGR Isoform 1 of Zinc finger protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#A0A9J7FXY4-1", "sequence": { "sequence": "MQSFYEKHCLLTQTLAFPNLLPAELGDQRPEHLTLPMETQADPASQEPPPLLESALSSSKVPSFPDKDGLGHEMLAAALLKAKSQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 483, "header": "tr|A0A9J7FXY4-1|A0A9J7FXY4_CRIGR Isoform 1 of Zinc finger protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FY40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#A0A9J7FY40-1", "sequence": { "sequence": "METQADPASQEPPPLLESALSSSKVPSFPDKDGLGHEMLAAALLKAKSQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 447, "header": "tr|A0A9J7FY40-1|A0A9J7FY40_CRIGR Computationally mapped isoform of Zinc finger protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GUV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#A0A9J7GUV7-1", "sequence": { "sequence": "MWLFQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 403, "header": "tr|A0A9J7GUV7-1|A0A9J7GUV7_CRIGR Computationally mapped isoform of Zinc finger protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#A0A9J7GVM1-1", "sequence": { "sequence": "MLAAALLKAKSQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 410, "header": "tr|A0A9J7GVM1-1|A0A9J7GVM1_CRIGR Computationally mapped isoform of Zinc finger protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4/entry#A0A9J7GZG5-1", "sequence": { "sequence": "MCMPQCTKVYMQRSKGNLWSCSLLPPSLSSSKVPSFPDKDGLGHEMLAAALLKAKSQELVTFEDVAVYFIWKEWKRLEPAQRDLYRDVMLENYGNVFSLDGESKTGNDQVISEGMGSHEMILGRFQTDVSQGLKFGEAYKHEVSLNRQLGNSSVGRLNRKIQEFHQVTVEGKLAHMGQRNDKNNEFGNSFTVNSSLTSHQRFPMGHRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECSECGKAFSQSAHLIQHQRIHTGEKPYECRDCGKTFSCSSALILHQRTHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECSECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNVMGVGRNSPRVSPELNIREST", "length": 455, "header": "tr|A0A9J7GZG5-1|A0A9J7GZG5_CRIGR Computationally mapped isoform of Zinc finger protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf3 PE=3 SV=1 CANONICAL=A0A9J7FXY4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270887", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270887" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1", "locus": {} } ], "crossref": [ { "id": "100771222", "url": "https://www.ncbi.nlm.nih.gov/gene/100771222", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771222", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771222", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZX1", "url": "https://www.orthodb.org/?gene=A0A9J7FZX1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15087:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15087:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270887", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270887", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLPSDVARLVLGYLQQENLTSTCQTFILESSNLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMKAKETSNEVPTIMSSLWKKLDHTLSQIRNMQSSPGFAAHQRARTRNGIAEIKRQRWLASQTASGNSELMALPYGSGQFTTSPLVATQTVKPTGQISAPVRSNIVVVNQSQSQNAVTTAESLSVIPGPPEKKSQTSLMSPGRRKSESQRKSFTSSGPHSSIRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNSIAQVPKQTDSNPTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNVSQSVCSQHMETNPNIVLAEETNLAIKSSFETEESDGQSGQPPFCTTYQNEDVLLSDLKNDNNHDVLRQESQENFSQISSSMQKKAFKTTVPAEQKCALDITFESVSNLSDFNQRGSSTESNEHCSELYTSQMPTEDEVAMEVEKNSLSPSLLNEPQLQPDQPDMPVTSFVSLGGETNDENLILSRKNSQLLSQSTPLTGKPSKSQFCENSNNVIKVKTNSLGSESPDSSQIQNSKIETNSESSVAAQPLPDCQDNSPLQSKISPVTVESLGLNVSEQIEIHLEESVPSDKQLSNGSASVDLNHGENETETRKSENSQEPSSSVKDGDTIFLSLGEHNSSEELALVPQEGNPMKNNHSLPSESGGSVGGSLETQNIDGKPSKDSVDVDASSIVSLKIIISDDPFVSSDAELSSAVSSIGGENLPTIILSSKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKPEEPVVNNPQNEDSIAFSASVAPCVPKDGGYIQLMPATSTAFGNSSNILIATCVTDPTTLGPTVSQSNVVVLPGNSAPMTAQPPPQQLQTPPKSNSVFTVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQKAQGLRNKPVTGKQLNNLTDLSSLSGACHTQRAETSDKNIATELGKKLEEVTIPLSSERVAPASKPFESHRRVLCFDSTVSSVTDTQGPQYKMTSQNKEKKETSFPHLDSAIVPSTLKLPPNNAIKREREKTVPKILSKSETAFSRHTTVKEIQSEKKVFPTEVALDSFHKTTANKENELCSDGERQKSPDSSKLPVGQQNGSLRNEKTIASLQELTKKQTTSSNNKSATSIGGAMKDLKEEQSKSSNSLIGAEILQDVPLHSPANRIADTDLPVPRTPGSGAGEKHKEEPAADNMKAPSSRRFGEDGSMPRIMVPPVTADLPACSPASETGSENSVSMAAHTLMILSRAAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELEERERNSRTSSKNLANSSVPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE", "length": 1422, "header": "tr|A0A9J7FZX1-1|A0A9J7FZX1_CRIGR Isoform 1 of Protein NPAT isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100771222 PE=4 SV=1 CANONICAL=A0A9J7FZX1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1/entry#A0A9J7FXZ7-1", "sequence": { "sequence": "MALPYGSGQFTTSPLVATQTVKPTGQISAPVRSNIVVVNQSQSQNAVTTAESLSVIPGPPEKKSQTSLMSPGRRKSESQRKSFTSSGPHSSIRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNSIAQVPKQTDSNPTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNVSQSVCSQHMETNPNIVLAEETNLAIKSSFETEESDGQSGQPPFCTTYQNEDVLLSDLKNDNNHDVLRQESQENFSQISSSMQKKAFKTTVPAEQKCALDITFESVSNLSDFNQRGSSTESNEHCSELYTSQMPTEDEVAMEVEKNSLSPSLLNEPQLQPDQPDMPVTSFVSLGGETNDENLILSRKNSQLLSQSTPLTGKPSKSQFCENSNNVIKVKTNSLGSESPDSSQIQNSKIETNSESSVAAQPLPDCQDNSPLQSKISPVTVESLGLNVSEQIEIHLEESVPSDKQLSNGSASVDLNHGENETETRKSENSQEPSSSVKDGDTIFLSLGEHNSSEELALVPQEGNPMKNNHSLPSESGGSVGGSLETQNIDGKPSKDSVDVDASSIVSLKIIISDDPFVSSDAELSSAVSSIGGENLPTIILSSKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKPEEPVVNNPQNEDSIAFSASVAPCVPKDGGYIQLMPATSTAFGNSSNILIATCVTDPTTLGPTVSQSNVVVLPGNSAPMTAQPPPQQLQTPPKSNSVFTVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQKAQGLRNKPVTGKQLNNLTDLSSLSGACHTQRAETSDKNIATELGKKLEEVTIPLSSERVAPASKPFESHRRVLCFDSTVSSVTDTQGPQYKMTSQNKEKKETSFPHLDSAIVPSTLKLPPNNAIKREREKTVPKILSKSETAFSRHTTVKEIQSEKKVFPTEVALDSFHKTTANKENELCSDGERQKSPDSSKLPVGQQNGSLRNEKTIASLQELTKKQTTSSNNKSATSIGGAMKDLKEEQSKSSNSLIGAEILQDVPLHSPANRIADTDLPVPRTPGSGAGEKHKEEPAADNMKAPSSRRFGEDGSMPRIMVPPVTADLPACSPASETGSENSVSMAAHTLMILSRAAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELEERERNSRTSSKNLANSSVPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE", "length": 1285, "header": "tr|A0A9J7FXZ7-1|A0A9J7FZX1_CRIGR Computationally mapped isoform of Protein NPAT isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100771222 PE=4 SV=1 CANONICAL=A0A9J7FZX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1/entry#A0A9J7FZX1-1", "sequence": { "sequence": "MLLPSDVARLVLGYLQQENLTSTCQTFILESSNLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMKAKETSNEVPTIMSSLWKKLDHTLSQIRNMQSSPGFAAHQRARTRNGIAEIKRQRWLASQTASGNSELMALPYGSGQFTTSPLVATQTVKPTGQISAPVRSNIVVVNQSQSQNAVTTAESLSVIPGPPEKKSQTSLMSPGRRKSESQRKSFTSSGPHSSIRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNSIAQVPKQTDSNPTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNVSQSVCSQHMETNPNIVLAEETNLAIKSSFETEESDGQSGQPPFCTTYQNEDVLLSDLKNDNNHDVLRQESQENFSQISSSMQKKAFKTTVPAEQKCALDITFESVSNLSDFNQRGSSTESNEHCSELYTSQMPTEDEVAMEVEKNSLSPSLLNEPQLQPDQPDMPVTSFVSLGGETNDENLILSRKNSQLLSQSTPLTGKPSKSQFCENSNNVIKVKTNSLGSESPDSSQIQNSKIETNSESSVAAQPLPDCQDNSPLQSKISPVTVESLGLNVSEQIEIHLEESVPSDKQLSNGSASVDLNHGENETETRKSENSQEPSSSVKDGDTIFLSLGEHNSSEELALVPQEGNPMKNNHSLPSESGGSVGGSLETQNIDGKPSKDSVDVDASSIVSLKIIISDDPFVSSDAELSSAVSSIGGENLPTIILSSKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKPEEPVVNNPQNEDSIAFSASVAPCVPKDGGYIQLMPATSTAFGNSSNILIATCVTDPTTLGPTVSQSNVVVLPGNSAPMTAQPPPQQLQTPPKSNSVFTVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQKAQGLRNKPVTGKQLNNLTDLSSLSGACHTQRAETSDKNIATELGKKLEEVTIPLSSERVAPASKPFESHRRVLCFDSTVSSVTDTQGPQYKMTSQNKEKKETSFPHLDSAIVPSTLKLPPNNAIKREREKTVPKILSKSETAFSRHTTVKEIQSEKKVFPTEVALDSFHKTTANKENELCSDGERQKSPDSSKLPVGQQNGSLRNEKTIASLQELTKKQTTSSNNKSATSIGGAMKDLKEEQSKSSNSLIGAEILQDVPLHSPANRIADTDLPVPRTPGSGAGEKHKEEPAADNMKAPSSRRFGEDGSMPRIMVPPVTADLPACSPASETGSENSVSMAAHTLMILSRAAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELEERERNSRTSSKNLANSSVPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE", "length": 1422, "header": "tr|A0A9J7FZX1-1|A0A9J7FZX1_CRIGR Isoform 1 of Protein NPAT isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100771222 PE=4 SV=1 CANONICAL=A0A9J7FZX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GY96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1/entry#A0A9J7GY96-1", "sequence": { "sequence": "MLLPSDVARLVLGYLQQENLTSTCQTFILESSNLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMKAKETSNEVPTIMSSLWKKLDHTLSQIRNMQSSPGFAAHQRARTRNGIAEIKRQRWLASQTASGNSELMALPYGSGQFTTSPLVATQTVKPTGQISAPVRSNIVVVNQSQSQNAVTTAESLSVIPGPPEKKSQTSLMSPGRRKSESQRKSFTSSGPHSSIRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNSIAQVPKQTDSNPTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNVSQSVCSQHMETNPNIVLAEETNLAIKSSFETEESDGQSGQPPFCTTYQNEDVLLSDLKNDNNHDVLRQESQENFSQISSSMQKKAFKTTVPAEQKCALDITFESVSNLSDFNQRGSSTESNEHCSELYTSQMPTEDEVAMEVEKNSLSPSLLNEPQLQPDQPDMPVTSFVSLGGETNDENLILSRKNSQLLSQSTPLTGKPSKSQFCENSNNVIKVKTNSLGSESPDSSQIQNSKIETNSESSVAAQPLPDCQDNSPLQSKISPVTVESLGLNVSEQIEIHLEESVPSDKQLSNGSASVDLNHGENETETHAELSSAVSSIGGENLPTIILSSKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKPEEPVVNNPQNEDSIAFSASVAPCVPKDGGYIQLMPATSTAFGNSSNILIATCVTDPTTLGPTVSQSNVVVLPGNSAPMTAQPPPQQLQTPPKSNSVFTVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQKAQGLRNKPVTGKQLNNLTDLSSLSGACHTQRAETSDKNIATELGKKLEEVTIPLSSERVAPASKPFESHRRVLCFDSTVSSVTDTQGPQYKMTSQNKEKKETSFPHLDSAIVPSTLKLPPNNAIKREREKTVPKILSKSETAFSRHTTVKEIQSEKKVFPTEVALDSFHKTTANKENELCSDGERQKSPDSSKLPVGQQNGSLRNEKTIASLQELTKKQTTSSNNKSATSIGGAMKDLKEEQSKSSNSLIGAEILQDVPLHSPANRIADTDLPVPRTPGSGAGEKHKEEPAADNMKAPSSRRFGEDGSMPRIMVPPVTADLPACSPASETGSENSVSMAAHTLMILSRAAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELEERERNSRTSSKNLANSSVPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE", "length": 1326, "header": "tr|A0A9J7GY96-1|A0A9J7GY96_CRIGR Computationally mapped isoform of Protein NPAT isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100771222 PE=4 SV=1 CANONICAL=A0A9J7FZX1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 876, "start_aa": "Thr", "end_pos": 876, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr876", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FXZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771222", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771222", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1004, "end_pos": 1006, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1188, "end_pos": 1190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1213, "end_pos": 1215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1386, "end_pos": 1388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 637, "end_pos": 639, "annotation": "n_glycosylation_sequon" }, { "start_pos": 649, "end_pos": 651, "annotation": "n_glycosylation_sequon" }, { "start_pos": 680, "end_pos": 682, "annotation": "n_glycosylation_sequon" }, { "start_pos": 698, "end_pos": 700, "annotation": "n_glycosylation_sequon" }, { "start_pos": 857, "end_pos": 859, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" }, { "start_pos": 974, "end_pos": 976, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FZX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX1" }, { "id": "PF15712", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15712" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein NPAT C-terminal", "eco_id": "ECO_0000259", "start_pos": 755, "end_pos": 1422, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 876 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1004, "end_pos": 1006 }, { "start_pos": 1188, "end_pos": 1190 }, { "start_pos": 1213, "end_pos": 1215 }, { "start_pos": 1386, "end_pos": 1388 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 342, "end_pos": 344 }, 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR028257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762281", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762281", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G000", "url": "https://www.orthodb.org/?gene=A0A9J7G000", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31191", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31191", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31191:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31191:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270959", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAGRPGAQSAGAGRSDSPGAKDGGRRPRPCAYLRDMKIHLEKNLEEERKILLQQQKICRNRARKYFIESSRRRKAFEEKRREQEEREHQMRERILQQRKQKLEEVTEKFQRCHVPLSHRRRAVFHSPVPPLEEALKQIQESNLKSELNIPHSHRPATSWQAIDSALPTPLSKNDHKHQKYLVRRINCDKEMKENNIANVATNKNVFQLKLEETQKLLENQHLSSLQKFCDEVNQITNSETLSSVDSLEAGEREEIYITLMTPSTSAQPNSVPLKSASLQSAHLNYYDEDRLSLSKTQHINNWLTNIDAQNTQPVASFSDILSKSSVLPSWECLSNKEQNPPTLSRTVERATKTANDSVLFVCSPSVVALDKKRENTSEGNTVRTSESTCGTPQREWLPSAKSPAFKVSGAWTTPEPLTQEAPSFSIQERLSELTQENRTASIPASFVPLLSPNSQSSGPSPENNTHIKEINPVQCSDKLDELKDVKYEKISYLNCNKEKLSLFSGNFQATCAPQNSNSKDRKQKASGPSAPLCNITPDCDLPDHSMKHMVHEQNGVRLLKSILKKESRYDHDYLKALVINQGFRFRHQKAEAIRDSIELTKQKGKGTGTPKTTKKLRWLDESNYTENCMDDSHPVRNRAGMALQWLQHYHTRSVQVPTCNPTSIPDCTAHSAGGKKAKADGVSENVTDSGGYEMDSVPLNFSTPAGCSFAKQAWSACRREDNKAPMHAGDAKTQKSKLPRSAKGTRRAGSTKVQTGLLYMNRKTTISQPLSSSKANTLAQAQGKLIIPNPLPKPPTNIKNGKNMQMSPCHLATPEQSQNIMTQNYLSSCMLPTEYRLNQWTQESHPPFPDSCSDLLAVTPALPTPHSAECQTSAKANYSNSTHTGFQQDGTVYCTQGSPVCEESNQSLTHRSTEEESVLSWKRRNNGCHNDRATDSAVTRRKQVIGNKWRNLLEQKRKISGSVGMKHTEQMIHFGQSVPLSASEPVQATRGPKTEEVSGSTSERLVPEDEILTAINSKPLQKPNLSLSKTHPANTCAVSAEEQKVLKSLRHLNQRLYYVQEAIYKNPSIKNTLQLIPLLNSQPRTRFSPDTGSRVQKKY", "length": 1100, "header": "tr|A0A9J7G000-1|A0A9J7G000_CRIGR Isoform 1 of Centrosomal protein of 126 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep126 PE=4 SV=1 CANONICAL=A0A9J7G000-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000/entry#A0A9J7FY27-1", "sequence": { "sequence": "MLAGRPGAQSAGAGRSDSPGAKDGGRRPRPCAYLRDMKIHLEKNLEEERKILLQQQKICRNRARKYFIESSRRRKAFEEKRREQEEREHQMRERILQQRKQKLEEVTEKFQRCHVPLSHRRRAVFHSPVPPLEEALKQIQESNLKSELNIPHSHRPATSWQAIDSALPTPLSKNDHKHQKYLVRRINCDKEMKENNIANVATNKNVFQLKLEETQKLLENQHLSSLQKFCDEVNQITNSETLSSVDSLEAGEREEIYITLMTPSTSAQPNSVPLKSASLQSAHLNYYDEDRLSLSKTQHINNWLTNIDAQNTQPVASFSDILSKSSVLPSWECLSNKEQNPPTLSRTVERATKTANDSVLFVCSPSVVALDKKRENTSEGNTVRTSESTCGTPQREWLPSAKSPAFKVSGAWTTPEPLTQEAPSFSIQERLSELTQENRTASIPASFVPLLSPNSQSSGPSPENNTHIKEINPVQCSDKLDELKDVKYEKISYLNCNKEKLSLFSGNFQATCAPQNSNSKDRKQKASGPSAPLCNITPDCDLPDHSMKHMVHEQNGVRLLKSILKKESRYDHDYLKALVINQGFRFRHQKAEAIRDSIELTKQKGKGTGTPKTTKKLRWLDESNYTENCMDDSHPVRNRAGMALQWLQHYHTRSVQVPTCNPTSIPDCTAHSAGGKKAKADGVSENVTDSGGYEMDSVPLNFSTPAGCSFAKQAWSACRREDNKAPMHAGDAKTQKSKLPRSAKGTRRAGSTKVQTGLLYMNRKTTISQPLSSSKANTLAQAQGKLIIPNPLPKPPTNIKNGKNMQMSPCHLATPEQSQNIMTQNYLSSCMLPTEYRLNQWTQESHPPFPDSCSDLLAVTPALPTPHSAECQTSAKANYSNSTHTGFQQDGTVYCTQGSPVCEESNQSLTHRSTEEESVLSWKRRNNGCHNDRATDSAVTRRKQVIGNKWRNLLEQKRKISGSVGMKHTEQMIHFGQSVPLSASEPVQATRGPKTEEDVQEAIYKNPSIKNTLQLIPLLNSQPRTRFSPDTGSRVQKKY", "length": 1039, "header": "tr|A0A9J7FY27-1|A0A9J7G000_CRIGR Computationally mapped isoform of Centrosomal protein of 126 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep126 PE=4 SV=1 CANONICAL=A0A9J7G000-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G000-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000/entry#A0A9J7G000-1", "sequence": { "sequence": "MLAGRPGAQSAGAGRSDSPGAKDGGRRPRPCAYLRDMKIHLEKNLEEERKILLQQQKICRNRARKYFIESSRRRKAFEEKRREQEEREHQMRERILQQRKQKLEEVTEKFQRCHVPLSHRRRAVFHSPVPPLEEALKQIQESNLKSELNIPHSHRPATSWQAIDSALPTPLSKNDHKHQKYLVRRINCDKEMKENNIANVATNKNVFQLKLEETQKLLENQHLSSLQKFCDEVNQITNSETLSSVDSLEAGEREEIYITLMTPSTSAQPNSVPLKSASLQSAHLNYYDEDRLSLSKTQHINNWLTNIDAQNTQPVASFSDILSKSSVLPSWECLSNKEQNPPTLSRTVERATKTANDSVLFVCSPSVVALDKKRENTSEGNTVRTSESTCGTPQREWLPSAKSPAFKVSGAWTTPEPLTQEAPSFSIQERLSELTQENRTASIPASFVPLLSPNSQSSGPSPENNTHIKEINPVQCSDKLDELKDVKYEKISYLNCNKEKLSLFSGNFQATCAPQNSNSKDRKQKASGPSAPLCNITPDCDLPDHSMKHMVHEQNGVRLLKSILKKESRYDHDYLKALVINQGFRFRHQKAEAIRDSIELTKQKGKGTGTPKTTKKLRWLDESNYTENCMDDSHPVRNRAGMALQWLQHYHTRSVQVPTCNPTSIPDCTAHSAGGKKAKADGVSENVTDSGGYEMDSVPLNFSTPAGCSFAKQAWSACRREDNKAPMHAGDAKTQKSKLPRSAKGTRRAGSTKVQTGLLYMNRKTTISQPLSSSKANTLAQAQGKLIIPNPLPKPPTNIKNGKNMQMSPCHLATPEQSQNIMTQNYLSSCMLPTEYRLNQWTQESHPPFPDSCSDLLAVTPALPTPHSAECQTSAKANYSNSTHTGFQQDGTVYCTQGSPVCEESNQSLTHRSTEEESVLSWKRRNNGCHNDRATDSAVTRRKQVIGNKWRNLLEQKRKISGSVGMKHTEQMIHFGQSVPLSASEPVQATRGPKTEEVSGSTSERLVPEDEILTAINSKPLQKPNLSLSKTHPANTCAVSAEEQKVLKSLRHLNQRLYYVQEAIYKNPSIKNTLQLIPLLNSQPRTRFSPDTGSRVQKKY", "length": 1100, "header": "tr|A0A9J7G000-1|A0A9J7G000_CRIGR Isoform 1 of Centrosomal protein of 126 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep126 PE=4 SV=1 CANONICAL=A0A9J7G000-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000/entry#A0A9J7G2A4-1", "sequence": { "sequence": "MLAGRPGAQSAGAGRSDSPGAKDGGRRPRPCAYLRDMKIHLEKNLEEERKILLQQQKICRNRARKYFIESSRRRKAFEEKRREQEEREHQMRERILQQRKQKLEEVTEKFQRCHVPLSHRRRAVFHSPVPPLEEALKQIQESNLKSELNIPHSHRPATSWQAIDSALPTPLSKNDHKHQKYLVRRINCDKEMKENNIANVATNKNVFQLKLEETQKLLENQHLSSLQKFCDEVNQITNSETLSSVDSLEAGEREEIYITLMTPSTSAQPNSVPLKSASLQSAHLNYYDEDRLSLSKTQHINNWLTNIDAQNTQPVASFSDILSKSSVLPSWECLSNKEQNPPTLSRTVERATKTANDSVLFVCSPSVVALDKKRENTSEGNTVRTSESTCGTPQREWLPSAKSPAFKVSGAWTTPEPLTQEAPSFSIQERLSELTQENRTASIPASFVPLLSPNSQSSGPSPENNTHIKEINPVQCSDKLDELKDVKYEKISYLNCNKEKLSLFSGNFQATCAPQNSNSKDRKQKASGPSAPLCNITPDCDLPDHSMKHMVHEQNGVRLLKSILKKESRYDHDYLKALVINQGFRFRHQKAEAIRDSIELTKQKGKGTGTPKTTKKLRWLDESNYTENCMDDSHPVRNRAGMALQWLQHYHTRSVQVPTCNPTSIPDCTAHSAGGKKAKADGVSENVTDSGGYEMDSVPLNFSTPAGCSFAKQAWSACRREDNKAPMHAGDAKTQKSKLPRSAKGTRRAGSTKVQTGLLYMNRKTTISQPLSSSKANTLAQAQGKLIIPNPLPKPPTNIKNGKNMQMSPCHLATPEQSQNIMTQNYLSSCMLPTEYRLNQWTQESHPPFPDSCSDLLAVTPALPTPHSAECQTSAKANYSNSTHTGFQQDGTVYCTQGSPVCEESNQSLTHRSTEEESVLSWKRRNNGCHNDRATDSAVTRRKQVIGNKWRNLLEQKRKISGSVGMKHTEQMIFQVVLLSVWCLRMKF", "length": 988, "header": "tr|A0A9J7G2A4-1|A0A9J7G2A4_CRIGR Computationally mapped isoform of Centrosomal protein of 126 kDa isoform X4 OS=Cricetulus griseus OX=10029 GN=Cep126 PE=4 SV=1 CANONICAL=A0A9J7G000-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000/entry#A0A9J7GVJ6-1", "sequence": { "sequence": "MKENNIANVATNKNVFQLKLEETQKLLENQHLSSLQKFCDEVNQITNSETLSSVDSLEAGEREEIYITLMTPSTSAQPNSVPLKSASLQSAHLNYYDEDRLSLSKTQHINNWLTNIDAQNTQPVASFSDILSKSSVLPSWECLSNKEQNPPTLSRTVERATKTANDSVLFVCSPSVVALDKKRENTSEGNTVRTSESTCGTPQREWLPSAKSPAFKVSGAWTTPEPLTQEAPSFSIQERLSELTQENRTASIPASFVPLLSPNSQSSGPSPENNTHIKEINPVQCSDKLDELKDVKYEKISYLNCNKEKLSLFSGNFQATCAPQNSNSKDRKQKASGPSAPLCNITPDCDLPDHSMKHMVHEQNGVRLLKSILKKESRYDHDYLKALVINQGFRFRHQKAEAIRDSIELTKQKGKGTGTPKTTKKLRWLDESNYTENCMDDSHPVRNRAGMALQWLQHYHTRSVQVPTCNPTSIPDCTAHSAGGKKAKADGVSENVTDSGGYEMDSVPLNFSTPAGCSFAKQAWSACRREDNKAPMHAGDAKTQKSKLPRSAKGTRRAGSTKVQTGLLYMNRKTTISQPLSSSKANTLAQAQGKLIIPNPLPKPPTNIKNGKNMQMSPCHLATPEQSQNIMTQNYLSSCMLPTEYRLNQWTQESHPPFPDSCSDLLAVTPALPTPHSAECQTSAKANYSNSTHTGFQQDGTVYCTQGSPVCEESNQSLTHRSTEEESVLSWKRRNNGCHNDRATDSAVTRRKQVIGNKWRNLLEQKRKISGSVGMKHTEQMIHFGQSVPLSASEPVQATRGPKTEEVSGSTSERLVPEDEILTAINSKPLQKPNLSLSKTHPANTCAVSAEEQKVLKSLRHLNQRLYYVQEAIYKNPSIKNTLQLIPLLNSQPRTRFSPDTGSRVQKKY", "length": 909, "header": "tr|A0A9J7GVJ6-1|A0A9J7GVJ6_CRIGR Computationally mapped isoform of Centrosomal protein of 126 kDa isoform X5 OS=Cricetulus griseus OX=10029 GN=Cep126 PE=4 SV=1 CANONICAL=A0A9J7G000-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FY27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY27" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FY27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY27" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762281", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762281", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" }, { "name": "ciliary base", "id": "GO:0097546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097546", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" }, { "name": "mitotic spindle organization", "id": "GO:0007052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007052", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" }, { "name": "cytoplasmic microtubule organization", "id": "GO:0031122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G000" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1025, "end_pos": 1027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" }, { "start_pos": 686, "end_pos": 688, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 878, "end_pos": 880, "annotation": "n_glycosylation_sequon" }, { "start_pos": 881, "end_pos": 883, "annotation": "n_glycosylation_sequon" }, { "start_pos": 906, "end_pos": 908, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1025, "end_pos": 1027 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 438, "end_pos": 440 }, { "start_pos": 464, "end_pos": 466 }, { "start_pos": 535, "end_pos": 537 }, { "start_pos": 624, "end_pos": 626 }, { "start_pos": 686, "end_pos": 688 }, { "start_pos": 701, "end_pos": 703 }, { "start_pos": 878, "end_pos": 880 }, { "start_pos": 881, "end_pos": 883 }, { "start_pos": 906, "end_pos": 908 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"MWNNVELLTSDDTGSGHINGGSRKENVTALYQVDLLGRISSEKASLNPKIQACSLSDGFIIVADQTVILLDRTCRTLQLHLIFDTVVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLFTKAFVKRDNDEYQRTYHNFIIEKDGSNEGTYYMLLLTNNGFFYITNLQLSQIEQAIENTDLDLAKKLQGQFKCSFISTENYHNLGCLNLVAGEFASETPVIIGGAGSCAFSKWESDSTKKEMSLKNFVDTEIVKGAKSFQLIDNLLFVLDTDNVLSLWDAYTLTPVWNWPSLPIEQFLLTTEADSPSSVTWQGIANLKLVTLTATTKEKMRSLIIFSLPSMEILYSLEVSSVSSLVQTGISTDTIYLLEGIHKNDPNLSEDSVSDLVLRYLTEVLPENRLRRLLHKHRFAEAESFAIQFGLDVELVYKVKSNDILEKLALISLDTSEQTKWQQLVEEAQENLCKIQDDDFVVNFCLKAQWITYETTQEMLSYAKARLLKKEDKTLPAYSDGFMEVLKAHAKLTTFYGAFGPEKFSGSSWIEFLNSEDVLGDIFMQLREGNLVCAQYLWLRHRADFESKFDVKMLENLLNSISTQVSLEKLCSWFKNDVIPFVRRIVPEGQNILAKWLEQASRNLELTDKANWPENGLQLAEVFFTAEKTEKFGFASSWHWISWKDYQNTEEVQQLQTLVIKLQELITLHKKYNCKLSLSEFEKENTTTIVFRMIDRVSAPELIPSVLEKFVRVYMREQNLQEELLLLYIEDLLKRCSSKSATLFDTAWEAKAMAVIRCLSDIDLIFDAVLKIMYKAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDTPSSLEDALKVAQGYRLSDDEIYSLRIIDLIDREQRDDCLLLLRSLPPVEAEKTAERVIIWARLALQEEPDGSEEDKAWRMSVAKTSVDILKILCDIQKVTGNLQKKDDSEEFLKQFKVVASLQENFEVFLPFEDYSNSTLVADLREQYIKAHEDAQAEHKLRGPPGPTLARGTDLSIKSKLHRQALALQVSAQELEAELALRALKHGKVGAALSKCRYLLNYYCNADTGRLLFLVCQKLCHMLANDVPMTAPVGLNLPSEIHDLACQAATLCSTDTLLDALELSKYTLTAVELSRQCQMDDSGILMKAAFGTHKDPYEEWSYSDFFSEDGIVLESQVVLPVIYELISSVVPLAESKRYPLDSISLPYCSTSKGDNLILPIVRSISTLLWNLQESSQWEMALRFVIGSFGACLQHSMSNIMSASLSEKLLGETTMANSKQIVVELKEKSVMFIRGNATTLLHKVFNCRLVDLDLALAYCTLLPQKDVFENLWKLIDKAWQNYNKILALSLVGSQLANLYQDIETGLRFHELSIDAQWGIRLGKLGISFQPAFRQSFLTKKDLLKALVNNIDMDTSLILEYCSTFQLDSDAALQLFIETLLHNTNNQSQGDASLEPTKQQHSRLLAKATEMVPLLASTKDLVVSLTGILYKLDPYDYEMIEVVLKVIEQANEKITSVNINQALNLLRHLKSYKRISPPVDLEYQYMLEHVITLPPAAQTRLPFHLILFGTAQNFWKILSSELSEESLPTLLLISKLMKFSLDTLYVSTAKHVFEKNLKPKLLKLAQAQSALMSKEVDKLTQTIESYLLSIVNPEWAVAIAISLTQEIPEGPFKMTSLKFCLYLAERWLQNIPSQDETREKAQALLKKLYLQFRRSGTEAVLIAHKLNVPEYLRVVGKPAHLIVSLYEHPSISGRLRNTSGKDYPDIHEAAKEIAEVNEINLEKIWDMLLEKWLCPSTVPSEKASEFFELEEDEVLHRVVYLLQSRPIDYSSRMLFVFAISATSTLGMRQLTFAHKTRALQCLFYLADKEMIESLFKKPTEEIKSYLKCITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSSISSVHSLWQVPYFSRAWQCVIQIPLLSASCPLRPSQLSDCCESLVAILECPVSDDLDMIGVAKQYVQLELPAFALACLMLMPHSEKRQQQIKNFLDSCDAQIILQQLEEHMSTGQLAGFSHQIRSLILNHVINKKEFGILAKTKYFQLLKWHMINTNNITELVNYLANDLSHHYRNHPKGPLHSCLVLSGSSLDEASALIIEYSKHCGKSVPSDAAPCEILKTFLGGSS", "length": 2229, "header": "tr|A0A9J7FYE9-1|A0A9J7FYE9_CRIGR Isoform 1 of Kinetochore-associated protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766053 PE=4 SV=1 CANONICAL=A0A9J7FYE9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M0U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9/entry#A0A8C2M0U5-1", "sequence": { "sequence": "MWNNVELLTSDDTGSGHINGGSRKENVTALYQVDLLGRISSEKASLNPKIQACSLSDGFIIVADQTVILLDRTCRTLQLHLIFDTVVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLFTKAFVKRDNDEYQRTYHNFIIEKDGSNEGTYYMLLLTNNGFFYITNLQLSQIEQAIENTDLDLAKKLQGQFKCSFISTENYHNLGCLNLVAGEFASETPVIIGGAGSCAFSKWESDSTKKEMSLKNFVDTEIVKGAKSFQLIDNLLFVLDTDNVLSLWDAYTLTPVWNWPSLPIEQFLLTTEADSPSSVTWQGIANLKLVTLTATTKEKMRSLIIFSLPSMEILYSLEVSSVSSLVQTGISTDTIYLLEGIHKNDPNLSEDSVSDLVLRYLTEVLPENRLRRLLHKHRFAEAESFAIQFGLDVELVYKVKSNDILEKLALISLDTSEQTKWQQLVEEAQENLCKIQDDDFVVNFCLKAQWITYETTQEMLSYAKARLLKKEDKTLPAYSDGFMEVLKAHAKLTTFYGAFGPEKFSGSSWIEFLNSEDVLGDIFMQLREGNLVCAQYLWLRHRADFESKFDVKMLENLLNSISTQVSLEKLCSWFKNDVIPFVRRIVPEGQNILAKWLEQASRNLELTDKANWPENGLQLAEVFFTAEKTEKFGFASSWHWISWKDYQNTEEVQQLQTLVIKLQELITLHKKYNCKLSLSEFEKENTTTIVFRMIDRVSAPELIPSVLEKFVRVYMREQNLQEELLLLYIEDLLKRCSSKSATLFDTAWEAKAMAVIRCLSDIDLIFDAVLKIMYKAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDTPSSLEDALKVAQGYRLSDDEIYSLRIIDLIDREQRDDCLLLLRSLPPVEAEKTAERVIIWARLALQEEPDGSEEDKAWRMSVAKTSVDILKILCDIQKVTGNLQKKDDSEEFLKQFKVVASLQENFEVFLPFEDYSNSTLVADLREQYIKAHEDAQAEHKLRGPPGPTLARGTDLSIKSKLHRQALALQVSAQELEAELALRALKHGKVGAALSKCRYLLNYYCNADTGRLLFLVCQKLCHMLANDVPMTAPVGLNLPSEIHDLACQAATLCSTDTLLDALELSKYTLTAVELSRQCQMDDSGILMKAAFGTHKDPYEEWSYSDFFSEDGIVLESQVVLPVIYELISSVVPLAESKRYPLDSISLPYCSTSKGDNLILPIVRSISTLLWNLQESSQWEMALRFVIGSFGACLQHSMSNIMSASLSEKLLGETTMANSKQIVVELKEKSVMFIRGNATTLLHKVFNCRLVDLDLALAYCTLLPQKDVFENLWKLIDKAWQNYNKILALSLVGSQLANLYQDIETGLRFHELSIDAQWGIRLGKLGISFQPAFRQSFLTKKDLLKALVNNIDMDTSLILEYCSTFQLDSDAALQLFIETLLHNTNNQSQGDASLEPTKQQHSRLLAKATEMVPLLASTKDLVVSLTGILYKLDPYDYEMIEVVLKVIEQANEKITSVNINQALNLLRHLKSYKRISPPVDLEYQYMLEHVITLPPAAQTRLPFHLILFGTAQNFWKILSSELSEESLPTLLLISKLMKFSLDTLYVSTAKHVFEKNLKPKLLKLAQAQSALMSKEVDKLTQTIESYLLSIVNPEWAVAIAISLTQEIPEGPFKMTSLKFCLYLAERWLQNIPSQDETREKAQALLKKLYLQFRRSGTEAVLIAHKLNVPEYLRVVGKPAHLIVSLYEHPSISGRLRNTSGKDYPDIHEAAKEIAEVNEINLEKIWDMLLEKWLCPSTVPSEKASEFFELEEDEVLHRVVYLLQSRPIDYSSRMLFVFAISATSTLGMRQLTFAHKTRALQCLFYLADKEMIESLFKKPTEEIKSYLKCITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSSISSVHSLWQVPYFSRAWQCVIQIPLLSASCPLRPSQLSDCCESLVAILECPVSDDLDMIGVAKQYVQLELPAFALACLMLMPHSEKRQQQIKNFLDSCDAQIILQQLEEHMSTGQLAGFSHQIRSLILNHVINKKEFGILAKTKYFQLLKWHMINTNNITELVNYLANDLSLDEASALIIEYSKHCGKSVPSDAAPCEILKTFLGGSS", "length": 2208, "header": "tr|A0A8C2M0U5-1|A0A8C2M0U5_CRIGR Computationally mapped isoform of Kinetochore-associated protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100766053 PE=4 SV=1 CANONICAL=A0A9J7FYE9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9/entry#A0A9J7FYE9-1", "sequence": { "sequence": "MWNNVELLTSDDTGSGHINGGSRKENVTALYQVDLLGRISSEKASLNPKIQACSLSDGFIIVADQTVILLDRTCRTLQLHLIFDTVVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLFTKAFVKRDNDEYQRTYHNFIIEKDGSNEGTYYMLLLTNNGFFYITNLQLSQIEQAIENTDLDLAKKLQGQFKCSFISTENYHNLGCLNLVAGEFASETPVIIGGAGSCAFSKWESDSTKKEMSLKNFVDTEIVKGAKSFQLIDNLLFVLDTDNVLSLWDAYTLTPVWNWPSLPIEQFLLTTEADSPSSVTWQGIANLKLVTLTATTKEKMRSLIIFSLPSMEILYSLEVSSVSSLVQTGISTDTIYLLEGIHKNDPNLSEDSVSDLVLRYLTEVLPENRLRRLLHKHRFAEAESFAIQFGLDVELVYKVKSNDILEKLALISLDTSEQTKWQQLVEEAQENLCKIQDDDFVVNFCLKAQWITYETTQEMLSYAKARLLKKEDKTLPAYSDGFMEVLKAHAKLTTFYGAFGPEKFSGSSWIEFLNSEDVLGDIFMQLREGNLVCAQYLWLRHRADFESKFDVKMLENLLNSISTQVSLEKLCSWFKNDVIPFVRRIVPEGQNILAKWLEQASRNLELTDKANWPENGLQLAEVFFTAEKTEKFGFASSWHWISWKDYQNTEEVQQLQTLVIKLQELITLHKKYNCKLSLSEFEKENTTTIVFRMIDRVSAPELIPSVLEKFVRVYMREQNLQEELLLLYIEDLLKRCSSKSATLFDTAWEAKAMAVIRCLSDIDLIFDAVLKIMYKAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDTPSSLEDALKVAQGYRLSDDEIYSLRIIDLIDREQRDDCLLLLRSLPPVEAEKTAERVIIWARLALQEEPDGSEEDKAWRMSVAKTSVDILKILCDIQKVTGNLQKKDDSEEFLKQFKVVASLQENFEVFLPFEDYSNSTLVADLREQYIKAHEDAQAEHKLRGPPGPTLARGTDLSIKSKLHRQALALQVSAQELEAELALRALKHGKVGAALSKCRYLLNYYCNADTGRLLFLVCQKLCHMLANDVPMTAPVGLNLPSEIHDLACQAATLCSTDTLLDALELSKYTLTAVELSRQCQMDDSGILMKAAFGTHKDPYEEWSYSDFFSEDGIVLESQVVLPVIYELISSVVPLAESKRYPLDSISLPYCSTSKGDNLILPIVRSISTLLWNLQESSQWEMALRFVIGSFGACLQHSMSNIMSASLSEKLLGETTMANSKQIVVELKEKSVMFIRGNATTLLHKVFNCRLVDLDLALAYCTLLPQKDVFENLWKLIDKAWQNYNKILALSLVGSQLANLYQDIETGLRFHELSIDAQWGIRLGKLGISFQPAFRQSFLTKKDLLKALVNNIDMDTSLILEYCSTFQLDSDAALQLFIETLLHNTNNQSQGDASLEPTKQQHSRLLAKATEMVPLLASTKDLVVSLTGILYKLDPYDYEMIEVVLKVIEQANEKITSVNINQALNLLRHLKSYKRISPPVDLEYQYMLEHVITLPPAAQTRLPFHLILFGTAQNFWKILSSELSEESLPTLLLISKLMKFSLDTLYVSTAKHVFEKNLKPKLLKLAQAQSALMSKEVDKLTQTIESYLLSIVNPEWAVAIAISLTQEIPEGPFKMTSLKFCLYLAERWLQNIPSQDETREKAQALLKKLYLQFRRSGTEAVLIAHKLNVPEYLRVVGKPAHLIVSLYEHPSISGRLRNTSGKDYPDIHEAAKEIAEVNEINLEKIWDMLLEKWLCPSTVPSEKASEFFELEEDEVLHRVVYLLQSRPIDYSSRMLFVFAISATSTLGMRQLTFAHKTRALQCLFYLADKEMIESLFKKPTEEIKSYLKCITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSSISSVHSLWQVPYFSRAWQCVIQIPLLSASCPLRPSQLSDCCESLVAILECPVSDDLDMIGVAKQYVQLELPAFALACLMLMPHSEKRQQQIKNFLDSCDAQIILQQLEEHMSTGQLAGFSHQIRSLILNHVINKKEFGILAKTKYFQLLKWHMINTNNITELVNYLANDLSHHYRNHPKGPLHSCLVLSGSSLDEASALIIEYSKHCGKSVPSDAAPCEILKTFLGGSS", "length": 2229, "header": "tr|A0A9J7FYE9-1|A0A9J7FYE9_CRIGR Isoform 1 of Kinetochore-associated protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766053 PE=4 SV=1 CANONICAL=A0A9J7FYE9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1040, "start_aa": "Thr", "end_pos": 1040, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1040", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766053", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766053", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "kinetochore microtubule", "id": "GO:0005828", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005828", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "RZZ complex", "id": "GO:1990423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990423", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein localization to kinetochore involved in kinetochore assembly", "id": "GO:1903394", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903394", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "mitotic spindle assembly checkpoint signaling", "id": "GO:0007094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" }, { "name": "mitotic sister chromatid segregation", "id": "GO:0000070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000070", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1009, "end_pos": 1011, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1327, "end_pos": 1329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1476, "end_pos": 1478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1787, "end_pos": 1789, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1952, "end_pos": 1954, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2158, "end_pos": 2160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FYE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" }, { "id": "PF24506", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24506" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 393, "start_aa": "Asn", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FYE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" }, { "id": "PF24520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 first ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 402, "end_pos": 647, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FYE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" }, { "id": "PF24516", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24516" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 second ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 753, "end_pos": 917, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FYE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" }, { "id": "PF24515", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24515" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 third ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 1327, "end_pos": 1535, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7FYE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYE9" }, { "id": "PF10493", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10493" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RZZ complex subunit KNTC1/ROD C-terminal", "eco_id": "ECO_0000259", "start_pos": 1581, "end_pos": 2128, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1040 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1009, "end_pos": 1011 }, { "start_pos": 1327, "end_pos": 1329 }, { "start_pos": 1476, "end_pos": 1478 }, { "start_pos": 1787, "end_pos": 1789 }, { "start_pos": 1952, "end_pos": 1954 }, { "start_pos": 2158, "end_pos": 2160 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 715, "end_pos": 717 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FYK6-1", "uniprot_ac": "A0A9J7FYK6", "uniprot_id": "A0A9J7FYK6_CRIGR", "mass": { "chemical_mass": 44335.0, "monoisotopic_mass": 44335.0 }, "refseq": { "ac": "XP_007640273", "name": "dnaJ homolog subfamily C member 28", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640273" }, "gene_names": [ { "name": "Dnajc28", "type": "recommended", "evidence": [ { "id": "A0A9J7FYK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6" } ] }, { "name": "Dnajc28", "type": "synonym", "evidence": [ { "id": "XP_007640273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640273" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily C member 28", "type": "synonym", "evidence": [ { "id": "A0A9J7FYK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily C member 28", "type": "synonym", "evidence": [ { "id": "XP_007640273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640273" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640273" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajc28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6", "locus": {} } ], "crossref": [ { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769155", "url": "https://www.ncbi.nlm.nih.gov/gene/100769155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052573", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052573", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769155", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWISLGK", "url": "https://omabrowser.org/oma/group/EWISLGK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FYK6", "url": "https://www.orthodb.org/?gene=A0A9J7FYK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39158:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39158:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09350", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09350", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FYK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMMCTKMAQTLRPRLISASLTPRGVTLLSGPGSRMISTHKPKKKIKEYYSLLNLREGCSVDDVRESFHKLAKVYHPDSGSNDANSATFIKIEEAYRNVLSHVIKQTQARQKAEDTEEEDKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLERELFANSITVKDVRQSKELKITQAMERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLVSRKKLGNPLTPGGQKQWNQVCEKFQENIRKLNKRISDFNLIVPILTRQKVHFDAQKEVIRVQKMYEAFIEAKEITEENPTDISKEEEKTPRVKTGFLNWLNLWKFIKI", "length": 380, "header": "tr|A0A9J7FYK6-1|A0A9J7FYK6_CRIGR Isoform 1 of DnaJ homolog subfamily C member 28 OS=Cricetulus griseus OX=10029 GN=Dnajc28 PE=4 SV=1 CANONICAL=A0A9J7FYK6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FYK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6/entry#A0A9J7FYK6-1", "sequence": { "sequence": "MNMMCTKMAQTLRPRLISASLTPRGVTLLSGPGSRMISTHKPKKKIKEYYSLLNLREGCSVDDVRESFHKLAKVYHPDSGSNDANSATFIKIEEAYRNVLSHVIKQTQARQKAEDTEEEDKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLERELFANSITVKDVRQSKELKITQAMERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLVSRKKLGNPLTPGGQKQWNQVCEKFQENIRKLNKRISDFNLIVPILTRQKVHFDAQKEVIRVQKMYEAFIEAKEITEENPTDISKEEEKTPRVKTGFLNWLNLWKFIKI", "length": 380, "header": "tr|A0A9J7FYK6-1|A0A9J7FYK6_CRIGR Isoform 1 of DnaJ homolog subfamily C member 28 OS=Cricetulus griseus OX=10029 GN=Dnajc28 PE=4 SV=1 CANONICAL=A0A9J7FYK6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769155", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769155", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YKV1-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member C28", "gene_name": "DNAJC28", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLTNTIGHHLMVHQAMIPRSLKPFSYICGKRMLSGYKPKRNVKDSYKILELEEGCSLDDIRNSYRSLAKKYHPDSGSITADSAAFVKVEEAYRVVLDDVANKKKPSENKEEEEEDQLKSNAPQHRHYLSFEGVGYGTPSQREKQYMQFRVDRATEQVLAYRTRKLESQYVATDLMRAKDVRQSKKVKITQAVERLVEDLIQESMAKGDFDNLSGKGKPLQKFSDCPHIDPMTHNLNRILIDNGYQPEWILLQKEIRETIERLRKSLVVSRSKLGEPMAPHRLKEWNHICQQFVEDIRKLNKRIDSFNLVVPILSRQMVHFSADKEIIRAQKTYEALMENTEASGSHTKEDKGEGVKRFGWKSSLLKWFNTTLK", "length": 373 }, "evidence": [ { "id": "A0A9J7FYK6", "url": "https://omabrowser.org/oma/group/A0A9J7FYK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MFP4-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member C28", "gene_name": "DNAJC28", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMAQILRPHLRSASVIPNRMKMGPYLVVIRTRMMSTHKSKRNIREYYGLLNLDEGCSADDVRESFRKLAKQYHPDGGSSTADSATFIRIEEAYRKVLSHVIEQTNARQSKVEDTEEEEEKFKYKTPQHRHYLSFEGIGFGTPSQREKQYRQFRADRATEQVMEYQKQKLQSQYFTDSVTVKDVRHSKERKITRAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIDQLREAILASRKKLGNPMTSAEQKQWNQVCEQFQEDIKKLNKRINDFNLIVPLLTRQKVHFDAQKEIARTQEIYTTLIKIKEITNKNPNNTDPGEGEKTPGVKTVFFNWMNVWKFIKI", "length": 380 }, "evidence": [ { "id": "A0A9J7FYK6", "url": "https://omabrowser.org/oma/group/A0A9J7FYK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYG2-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member C28", "gene_name": "Dnajc28", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNTVCAKMARILRLHLTNASLIPPGVKLLSDPGSRMISTHKPKELSEYYRLLNLNEGCSADNIREAFHRLAKQYHPDSGSADADSATFIKIEEAYRNVLSHVIKQMQARQNKAEDAEEEAEKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLQREYFANSITVKDVWQSKQQKITQAMDRLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREGLLVSRKKLGSPLSPVGQKQWTHVCEQFQEDIRKLNKRISDFNLIVPILTRQKVHFDAQKEITRVQEIYRAFIEAKEVAEDKQTDISQGEEEKTPSIKAGFLNWLNLWKFIKI", "length": 383 }, "evidence": [ { "id": "A0A9J7FYK6", "url": "https://omabrowser.org/oma/group/A0A9J7FYK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VCE1-1", "protein_name": "DnaJ homolog subfamily C member 28", "gene_name": "Dnajc28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MINTVCMKTTRILRLHLTNASLIPPGIKMLSDPRSRMISTHESQKLREYYRLLNLDEGCSVDDVRESFHKLARQYHPDSGSSDADSATFIKIEEAYRNVLSHAIKRMHAGQDKAEDAAEDEEEGKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLQREFFANSITVKDVRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKVHFDAQKEIIRVQEMYGAFVEANEVTEENQTDVSQGEESKTPRVKAGFLNWLNLWKSIKI", "length": 385 }, "evidence": [ { "id": "A0A9J7FYK6", "url": "https://omabrowser.org/oma/group/A0A9J7FYK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX36-1", "protein_name": "DnaJ homolog subfamily C member 28", "gene_name": "DNAJC28", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNTMYVMMAQILRSHLIKATVIPNRVKMLPYFGIIRNRMMSTHKSKKKIREYYRLLNVEEGCSADEVRESFHKLAKQYHPDSGSNTADSATFIRIEKAYRKVLSHVIEQTNASQSKGEEEEDVEKFKYKTPQHRHYLSFEGIGFGTPTQREKHYRQFRADRAAEQVMEYQKQKLQSQYFPDSVIVKNIRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKEISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILTRQKVHFDAQKEIVRAQKIYETLIKTKEVTDRNPNNLDQGEGEKTPEIKKGFLNWMNLWKFIKIRSF", "length": 388 }, "evidence": [ { "id": "A0A9J7FYK6", "url": "https://omabrowser.org/oma/group/A0A9J7FYK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VM54-1", "protein_name": "J domain-containing protein", "gene_name": "Dmel\\CG43322", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FYY8-1", "uniprot_ac": "A0A9J7FYY8", "uniprot_id": "A0A9J7FYY8_CRIGR", "mass": { "chemical_mass": 247998.0, "monoisotopic_mass": 247998.0 }, "refseq": { "ac": "XP_007647169", "name": "integrator complex subunit 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647169" }, "gene_names": [ { "name": "Ints1", "type": "recommended", "evidence": [ { "id": "A0A9J7FYY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ] }, { "name": "Ints1", "type": "synonym", "evidence": [ { "id": "XP_007647169", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647169" } ] } ], "protein_names": [ { "name": "Integrator complex subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FYY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8/entry#names_and_taxonomy" } ] }, { "name": "integrator complex subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007647169", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647169" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613618.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647169", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647169" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ints1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8", "locus": {} } ], "crossref": [ { "id": "100764130", "url": "https://www.ncbi.nlm.nih.gov/gene/100764130", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764130", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSEFRFY", "url": "https://omabrowser.org/oma/group/CSEFRFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2L7B4", "url": "https://www.orthodb.org/?gene=A0A8C2L7B4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FYY8", "url": "https://www.orthodb.org/?gene=A0A9J7FYY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21224:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21224:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22928", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22928", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22929", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22929", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647169", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647169", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2L7B4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L7B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2L7B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L7B4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTERASDSRRLLPGEGASARGARAAGRMNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDATASLSGTSALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEVRLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGPEDMDAISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADATASGEEDEEGESREQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGGLRDKEEKEPPMEEDVGEADALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVLSALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWTSGETATMHILVVHAMVILLTLGPPRAGDGEFHELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPEDDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQAMATLLSSPHGGTLALAMHHSHFLSCPLMRQLYQYQRAVPQDTGFSSLFLKVLMQILQWLDSPAVEDGPLQAQLKLFATRYSARRRISDVRSGLLHLAEALSFHHDLEVANSTVRAVIATLKSGEKCTVEPELISKVLRGLIEVRSPHLEELLTALFSATAEASCPSSASGPIVVVSSLLLQEKDEPLGPSKQDAEGASTETMRLGPASGLLVDWLETLDPEVVSSCPDLQRRLLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHRCIRILLGKSREQRLDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSAARTLIQTRLPLLLSCCRGNNESVGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRPEVRVPVPEVLLQSEGATSSSICKLDGLIHRFITLLADTSDSRSSESRVADANMACRKLAVAHPILLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFFLHVLGILELLQPRVFQSEHQGALWDCLRSFIRLLLNYRKSSRHLAPFISKFVQFIHKYVACSAPAAVTFLQKHAEPLHDLSFDNSDLVMLKSLLAGLSLPSRDGRTDQGLDEEGEDERSAGSLPLVSVSLSTPLTVADVAPHMKRLSRGQAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYGQIDTSAQISEALKILHMEAVM", "length": 2222, "header": "tr|A0A9J7FYY8-1|A0A9J7FYY8_CRIGR Isoform 1 of Integrator complex subunit 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ints1 PE=4 SV=1 CANONICAL=A0A9J7FYY8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2L7B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8/entry#A0A8C2L7B4-1", "sequence": { "sequence": "MTERASDSRRLLPGEGASARGARAAGRMNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDATASLSGTSALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEVRLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGPEDMDAISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADATASGEEDEEGESREQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGGLRDKEEKEPPMEEDVGEADALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVLSALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWTSGETATMHILVVHAMVILLTLGPPRAGDGEFHELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPEDDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQAMATLLSSPHGGTLALAMHHSHFLSCPLMRQLYQYQRAVPQDTGFSSLFLKVLMQILQWLDSPAVEDGPLQAQLKLFATRYSARRRISDVRSGLLHLAEALSFHHDLEVANSTVRAVIATLKSGEKCTVEPELISKVLRGLIEVRSPHLEELLTALFSATAEASCPSSASGPIVVVSSLLLQEKDEPLGPSKQDAEGASTETMRLGPASGLLVDWLETLDPEVVSSCPDLQRRLLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHRCIRILLGKSREQRLDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSAARTLIQTRLPLLLSCCRGNNESVGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRPEVRVPVPEVLLQSEGATSSSICKLDGLIHRFITLLADTSDSRSSESRVADANMACRKLAVAHPILLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFFLHVLGILELLQPRVFQSEHQGALWDCLRSFIRLLLNYRKSSRHLAPFISKFVQFIHKYVACSAPAAVTFLQKHAEPLHDLSFDNSDLVMLKSLLAGLSLPSRDGRTDQGLDEEGEDERSAGSLPLVSVSLSTPLTVADVAPHMKRLSRGQAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYGQIDTSAQISEALKILHMEAVM", "length": 2220, "header": "tr|A0A8C2L7B4-1|A0A8C2L7B4_CRIGR Computationally mapped isoform of Integrator complex subunit 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ints1 PE=4 SV=1 CANONICAL=A0A9J7FYY8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8/entry#A0A9J7FYY8-1", "sequence": { "sequence": "MTERASDSRRLLPGEGASARGARAAGRMNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDATASLSGTSALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEVRLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGPEDMDAISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADATASGEEDEEGESREQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGGLRDKEEKEPPMEEDVGEADALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVLSALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWTSGETATMHILVVHAMVILLTLGPPRAGDGEFHELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPEDDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQAMATLLSSPHGGTLALAMHHSHFLSCPLMRQLYQYQRAVPQDTGFSSLFLKVLMQILQWLDSPAVEDGPLQAQLKLFATRYSARRRISDVRSGLLHLAEALSFHHDLEVANSTVRAVIATLKSGEKCTVEPELISKVLRGLIEVRSPHLEELLTALFSATAEASCPSSASGPIVVVSSLLLQEKDEPLGPSKQDAEGASTETMRLGPASGLLVDWLETLDPEVVSSCPDLQRRLLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHRCIRILLGKSREQRLDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSAARTLIQTRLPLLLSCCRGNNESVGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRPEVRVPVPEVLLQSEGATSSSICKLDGLIHRFITLLADTSDSRSSESRVADANMACRKLAVAHPILLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFFLHVLGILELLQPRVFQSEHQGALWDCLRSFIRLLLNYRKSSRHLAPFISKFVQFIHKYVACSAPAAVTFLQKHAEPLHDLSFDNSDLVMLKSLLAGLSLPSRDGRTDQGLDEEGEDERSAGSLPLVSVSLSTPLTVADVAPHMKRLSRGQAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYGQIDTSAQISEALKILHMEAVM", "length": 2222, "header": "tr|A0A9J7FYY8-1|A0A9J7FYY8_CRIGR Isoform 1 of Integrator complex subunit 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ints1 PE=4 SV=1 CANONICAL=A0A9J7FYY8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764130", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764130", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z496-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNRPKAAAVRRPSAAPKPSAHPPPGDFIALGSKGQGGDGKAAVTLLKPAPAGLPSERKRDAAAALSGPAGLGGLSKRPKLSATPPLSALGRLAEAAVAEKRAISPSIKEPSVIPIEVVPTVLLDEIEAAEAEGNDDRIEGVLCGAAKQLKMNRAKPDTTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKTFVDNIQTAFNTKMPPKSMLLHGEVGRSGGDISAGSSPHPSMTEEEDSQSELLIAEEKMSPEQEGQLMPRYDDLAESVEEYVLDMLRDQLNRRQPMDNVSRNLLRLLTATCGYKEVRQMAVQRLEMWLQNPKLTKPAQDLLMSVCMNCNTHSSEDMEVISNLIKIRLKPKVLLNHYMLCVRELLNAHRDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSEQAPKYLAMVFQDLLTTKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEAQYAEMEFKERFVIHITDLLAVSMMLGITAQVKEAGIAWDKGEKKNLEVLRSFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRDLPLGPADAMELADHLVKRAAAVQADDVEVLRVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPSLKMLMEMVMTNNYSYPQCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHVLEQVKSLNQSLRLGHLLCRSRHPDFLLNIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADESTSGEEEEEGESKEQRAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLSSSQVASRVLAMKGLSLVLSEGGLRDGEEKDHPMEEDSGDSELLQGYQWLLRDLPRLPLFDSVRATTAVALQQAIHMETDPQTISAYLVYLSQHAPVEEQGQHNDLALDVARLIVERSTIMSHLFSKLSYCAESDAVLVALLSIFSRYIKCMRQSKEGEEVYRWSESQDQVFLRWTSGETATMHILVVHAMVILLTLGPPQAGDGDFYTLLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVSHDPQTLEQNIMDKNYMAHLVEVQHERGATGGQTFHSLLTASLPARRDSAETAKSKSSPESNQGQSRIRALSQVRVLGPEDDLAGIFLQLFPLNPDPRWQNSNLRPLALALQQALGQELAHIRQGNTQVTGITAQLLQAVAALMNSPHSGALVMAMHRHHFISCPLMRQLYQYQRCMPQDTAFSSLFFKVLMQMLQWLDNPAVEDGPLRAQLKGFAVQYSSRHRISDVRGGFLHLTEALTFRHDPDLISSTVRAIIATLKSGEKGNVEPELISKVLQGLIETQSPYLEELLTVLFSATVETTARFPAMKPIAVVSSLLLQDKEETTVKKEVDSCSTEAAWLGPSSGLLNDWLEMLDPEVISSCPDLQQKLLFSWNKAGSQVPSFRPYLLALLTHQSSWTTLHQCIKLLLCRNREQRFDPTASLDFLWACIHIPRIWQGRDQRTPQKRREEFVLHLKASELISMVELILAEAETRYQNTEEASCTLIQSRLPLLLSCSHGDLESMKKVTEYLTSCIQQWGSSSVGKCCQDLLLQIYLQLPEQLVPLPEMLLTSEGARDSSTCKLDALVHRFINLLADTSDSKSSESRVWDANMACRKLAVAHPILLLRHLPMIAALLHGRVHLNFQEFRQQNHLTFFIHVLGILELLQPQVFQNEHQAALWDCLLSFIRLLLNYRKSSRHLAAFISKYVQFIQKYITCNAQAAVSFLQKHSDPLHDLSSDNSDLAMLKSLLAGLSLPSKSSILDRGSEEEKDDEAAAGSLPLVSVSLFTPLTPAEMAPYMKRLSRGQTVEDILEVLTDIDEMSRRRPEILSFFATNLQKLMSSSEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYSQIDTSSQISEALKVLHMEATI", "length": 2187 }, "evidence": [ { "id": "A0A9J7FYY8", "url": "https://omabrowser.org/oma/group/A0A9J7FYY8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TV32-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQTTESKTASTLLKPAPSGLPSERKRDAAAALAGASALPGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVPPTVLLDEIEAAELEGNDDRLEGVLCGAVKQLKVTRAKPDSVLYLSLMYLAKMKPNIFATEGVIEALCSLLRRDASVSFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEAGRGGGDLSAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDSVSRNLLRLLTSACGYKEARLMAVQRLEMWLQNPKLTRPAQDLLMSVCMNCSTHGAEDMDVISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLDMEFKERFVVHVTDVLAVSMMLGITAQVKEAGVAWDKGEKKNLEVLRSFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVDVLKVERVQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMAMTNNYSYPPCTLTDEESRTEMINRELQVSQREKQEILAFEGHLAAASTRQTITESSSLLLSQLTSLEPQGPPRRPPPHILDQVKGLNQSLRLGHLLCRSRNPDFLLNIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADEPASGGEEEEGESKEQKARKRQRQQKQKQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVAARVLAMKGLSLVLSEGSLRDGEEKEPPLEEDSGDADALQGYQWLLRDLPRLPLFESVRSTTALALQQAIHMETDPQTISAYLVYLSQHTPVEEQGQHSDLALDVARLIVERSTIMSHLFSKRSCSAESDVVLAALLSIFSRYVQRMRKSKEGEEVYSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRAGDSEFQALLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPARRDSTEAPKPKSSPEQPPGQGGTRAVARVRALGPEDDLAGLLLQIFPLSPGPRWKSSHARPAALALQQALGRELARVRQGSPEVPGVAVRLLQALATLLSSPHGGALALAMHRSHVLACPLMRQLCQYQRCAPQDTGFSSLFLKVLVQALQWLDGPSVEAGPLQAQLRLFAAQCSARRRISNVRSGFLHLVEALTFRGDPEAVSSTVRAIVATLRSGEQCDVEPELISKVLRSLIEVRSPHLEELLAALFSTASAVPPSGPVVVVSSLLLPEKEEPLAPGKQEADSCSQEAMLLGPCSGLLVDWLEMLDPEVVGSCPDLQQRLLFSRGKGKGHPGPQVPSFRPYLLALLTHQSSWSTLHQCIRILLGRGREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQPAELVGLVELILAEAEARSQDGDAGACGLLQARLPLLLSCCRGGDEGIKKVTAHLTSCVQQWGDSVLGKCSRDLLVQLYLQRPDLRVPLPDVLLHSQGATGSSVCKLDGLIHRFITLLADTSDSRASESRVADASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLTFFMHVLGVLELLQPQVFQSEHQGALWDCLLSFVRLLRNYRKSSRHLVPFASKFVRFTHKYISCSPAAAVAFLQKHLNVLHDLSLDSSDLVMLKSLLAGLSLPSRDGGADRALDEEGEDESSAGSLPLVSVCIFTPLTAAEMAPYMKRLSRGQTVEDLLEVLSDVDEMSRRRPEILGFFSTSLQRLMSSAEESCRSLAFSLALRSIQNNPGIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYGQMDTSAQISEALRILHLEAMM", "length": 2189 }, "evidence": [ { "id": "A0A9J7FYY8", "url": "https://omabrowser.org/oma/group/A0A9J7FYY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1M8D7-1", "protein_name": "Integrator complex subunit 1", "gene_name": "Ints1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTERASDSRRLLPGDGASSRGARAAGRMNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDASASLSGASGLTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEVRLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGSEDMDVISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADATASGEEDDEGESREQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGGLRDKEEKEPPMEEDVGEADALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVLSALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWTSGETATMHILVVHAMVILLTLGPPRSGDSEFSELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPEDDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQAMATLLSSPHGGTLALAMHHSHFLSCPLMRQLCQYQRAVPQDTGFSSLFLKVLMQILQWLDSPAVEDGPLQAQLKLFATRYSARRRISDVRSGLLHLAEALSFHRDLEVANSTARAVIATLRSGEKCTVEPELISKVLRGLIEVRSPHFEELLTALFSATAETCPSPASGPIVVVSSLLLQERDEPLGPSTQDAEGASTEAMRLGPASGLLVDWLETLDPEVVCSCPDLQWKLLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHRCTRVLLSKSREQRLDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSAARTLIQTRLPLLLSCCRSNDESIGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRPEVRVPVPEVLLQSEGATSSSICKLDGLIHRFITLLADTSDSRSSESRVADANMACRKLAVAHPILLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFYLHVLGILELLQPRVFQSEHQGALWDCLRSFIRLLLNYRKSSRQLAPFISKFVQFIHKYVACSAPAAVAFLQKHAEPLHDLSFDNSDLVMLKSLLAGLSLPSRDGRADQGLDEEGEDERSAGSLPLVSVSLSTPLTVADVAPHMKRLSRGQAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGMYGQIDTSAQISEALKILHMEAVM", "length": 2221 }, "evidence": [ { "id": "A0A9J7FYY8", "url": "https://omabrowser.org/oma/group/A0A9J7FYY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P4S8-1", "protein_name": "Integrator complex subunit 1", "gene_name": "Ints1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQASESKTTSTLLKPAPSGLPSERKRDASASLSGTSALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASVNFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCRTFVDNIQTAFNTKMPPKSVLLQGEGARSGGELGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRPRYDELTESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTATCGYKEVRLLAVQRLEMWLQNPKLTRPAQDLLMSVCMNCNSHGSEDMDVISHLIKIRLKPKVLLNHYMLCIRELLNAHKDNLGTTIKFVIFNELSNARNPNNMQILYTVLQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGVAWDKGEKRNLEVLRTFQNQIAAIQRDAVWWLHTVVPSVSKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRVLVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVERIQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMINRELQISQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKALNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAADSTASGEEDDEGESREQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGGLRDKEEKEPPMEEDIGETDALQGYQWLLRDLPRLPLFDSVRTTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQGPHSDLALDVARLVVERSTIMAHLFSKPSCSTASDAVLSALLSVFSRYVRRMRKSKEGEEVYSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRSGDSEFSELLDIWFPEKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVPRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQYLDQAVAQDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPESSPEPPPGQGRTRAGTQVPVLGPEDDLAGIFLQIFPLSPDPRWQSSSPRPLALALQQALGQELARVRQGNPEVPGITVRLLQAMTTLLSSPHGGTLALAMHHSHFLSCPLMRQLYQYQRAVPQDTGFSSLFLKVLMQILQWLDSPAVEDGPLQAQLKLFATRYSARHRISDVRSGLLHLADALSFHGDLEVANSTARAVIATLRSGEKCPVEPELISKVLRGLIEVRSPHLEELLTALFSATTETSCPSPASGPIVVVSSLLLQEKEELLGPSKQEVEGASTEAMRLGPASGLLVDWLETLDPEVVCSCPDLQWKLLFSRRKGKGHISAQVLSFRPYLLALLTHQASWSTLHCCIRVLLGKSREQRLDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLHVQGPELLSLVELILSEAETRSQDGDSAARTLIQTRLPLLLSCCRSNDESIGKVTEHLTSCIQQWGDSVLGQRCRDLLLQLYLQRPEVRVPVPEVLLQSEGATSSSICKLDGLVHRFITLLADTSDSRSSESRVADANMACRKLAVAHPVLLLRHLPMIAALLHGRTHLNFQEFRQQNHLAFFLHVLGILELLQPRVFQSEHQGALWDCLRSFIRLLLNYRKSSRHLAPFISKFVQFIHKYVGCSAPAAVAFLQKHAEPLHDLSFDNSDLVMLKSLLAGLSLPSRDGRTDQGLDEEGEDERSAGSLPLVSVSLSTPLTVADVAPHMKRLSRGRAVEDVLETLSDIDEMSRRRPEVLGFFSTNLQRLMSSAEESCRNLAFSLALRSIQNNPSIAADFLPTFMYCLGSRDFEVVQTALRNLPEYTLLCQEHAAVLLHRAFLVGVYGQIDTSAQISEALKILHMEAVM", "length": 2195 }, "evidence": [ { "id": "A0A9J7FYY8", "url": "https://omabrowser.org/oma/group/A0A9J7FYY8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKTFVDNIQTAFNTRMPPRSVLLQGEAGRVAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVHITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDTDVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQAQHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQSKEGEEVYSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRADDSEFQALLDIWFPEEKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPIGQGRIRVGTQLRVLGPEDDLAGMFLQIFPLSPDPRWQSSSPRPVALALQQALGQELARVVQGSPEVPGITVRVLQALATLLSSPHGGALVMSMHRSHFLACPLLRQLCQYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLASQASAGRRLSDVRGGLLRLAEALAFRQDLEVVSSTVRAVIATLRSGEQCSVEPDLISKVLQGLIEVRSPHLEELLTAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGADGGSLEAVRLGPSSGLLVDWLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPSFRPYLLTLFTHQSSWPTLHQCIRVLLGKSREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQGPELISLVELILAEAETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCRDLLLQLYLQRPELRVPVPEVLLHSEGAASSSVCKLDGLIHRFITLLADTSDSRALENRGADASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQPHVFRSEHQGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQKHADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFTPLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCRNLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHAAVLLHRAFLVGMYGQMDPSAQISEALRILHMEAVM", "length": 2190 }, "evidence": [ { "id": "A0A9J7FYY8", "url": "https://omabrowser.org/oma/group/A0A9J7FYY8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W1C5-1", "protein_name": "Integrator complex subunit 1", "gene_name": "IntS1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "integrator complex", "id": "GO:0032039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032039", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "pmid": "" }, { "name": "INTAC complex", "id": "GO:0160232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160232", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1547, "end_pos": 1549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1805, "end_pos": 1807, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"A0A9J7FZ02_CRIGR", "mass": { "chemical_mass": 7483.0, "monoisotopic_mass": 7483.0 }, "refseq": { "ac": "XP_007639871", "name": "C-C motif chemokine 26", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639871" }, "gene_names": [ { "name": "Ccl26", "type": "recommended", "evidence": [ { "id": "A0A9J7FZ02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02" } ] }, { "name": "Ccl26", "type": "synonym", "evidence": [ { "id": "XP_007639871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639871" } ] } ], "protein_names": [ { "name": "C-C motif chemokine 26", "type": "synonym", "evidence": [ { "id": "XP_007639871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639871" }, { "id": "A0A9J7FZ02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 26% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613822.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639871", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639871" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccl26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZ02", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZ02", "database": "AlphaFoldDB", "categories": [] }, { "id": "103161431", "url": "https://www.ncbi.nlm.nih.gov/gene/103161431", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103161431", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161431", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZ02", "url": "https://www.orthodb.org/?gene=A0A9J7FZ02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639871", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639871", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTFSLSPIVLLAFFLSVHLGTVTHILTTKRGKKKICVQPQAKWVQRYISMLKAHKRAGGFAQGSLN", "length": 67, "header": "tr|A0A9J7FZ02-1|A0A9J7FZ02_CRIGR Isoform 1 of C-C motif chemokine 26 OS=Cricetulus griseus OX=10029 GN=Ccl26 PE=4 SV=1 CANONICAL=A0A9J7FZ02-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ02/entry#A0A9J7FZ02-1", "sequence": { "sequence": "MKTFSLSPIVLLAFFLSVHLGTVTHILTTKRGKKKICVQPQAKWVQRYISMLKAHKRAGGFAQGSLN", "length": 67, "header": "tr|A0A9J7FZ02-1|A0A9J7FZ02_CRIGR Isoform 1 of C-C motif chemokine 26 OS=Cricetulus griseus OX=10029 GN=Ccl26 PE=4 SV=1 CANONICAL=A0A9J7FZ02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271745" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ39" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103162143", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ39", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZ39", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZ39", "database": "AlphaFoldDB", "categories": [] }, { "id": "103162143", "url": "https://www.ncbi.nlm.nih.gov/gene/103162143", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103162143", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162143", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZ39", "url": "https://www.orthodb.org/?gene=A0A9J7FZ39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14845:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14845:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14988", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14988", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271745", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESQGQGYPSWNTRGRRATIFPQREGAKPLGLSALPAQDEADFLTPHERRYRPPLTKKRAMCDFRVRWPEIVCREQEAQREDLPQPGLQPLDRVHNLTPFSSGGSISLKQQASSHSDFQDSQGSPAYLMDALSGPPHPHMRILKNYLRPELMTRLEKRVRRRTLVAMKQLNQEMEAVRFRRAVLLKDTRELQDERAFEEAENKPLLEYLKERNERAQEKYDFLWKDYIQQSQDIKDRRRKLVSTFTSQTANLQKQLAQGRKMKAGLRKKLKDLDPIAQIKETQDREIEALELEKARIIADLPFVDQKAHFQFLKERAALEKQVEELNLLESGEDITRELKKKAKALEVKAKKAHKNLCHHVDIENRLLRTKLQQLDEELFELEARKKKLEQRTQQWKEQQWYLEALARGRQRLQQQECRPPQTTDCPPPTPEPSTGCQAENQS", "length": 443, "header": "tr|A0A9J7FZ39-1|A0A9J7FZ39_CRIGR Isoform 1 of Coiled-coil domain-containing protein 121 OS=Cricetulus griseus OX=10029 GN=LOC103162143 PE=4 SV=1 CANONICAL=A0A9J7FZ39-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZ39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ39/entry#A0A9J7FZ39-1", "sequence": { "sequence": "MESQGQGYPSWNTRGRRATIFPQREGAKPLGLSALPAQDEADFLTPHERRYRPPLTKKRAMCDFRVRWPEIVCREQEAQREDLPQPGLQPLDRVHNLTPFSSGGSISLKQQASSHSDFQDSQGSPAYLMDALSGPPHPHMRILKNYLRPELMTRLEKRVRRRTLVAMKQLNQEMEAVRFRRAVLLKDTRELQDERAFEEAENKPLLEYLKERNERAQEKYDFLWKDYIQQSQDIKDRRRKLVSTFTSQTANLQKQLAQGRKMKAGLRKKLKDLDPIAQIKETQDREIEALELEKARIIADLPFVDQKAHFQFLKERAALEKQVEELNLLESGEDITRELKKKAKALEVKAKKAHKNLCHHVDIENRLLRTKLQQLDEELFELEARKKKLEQRTQQWKEQQWYLEALARGRQRLQQQECRPPQTTDCPPPTPEPSTGCQAENQS", "length": 443, "header": "tr|A0A9J7FZ39-1|A0A9J7FZ39_CRIGR Isoform 1 of Coiled-coil domain-containing protein 121 OS=Cricetulus griseus OX=10029 GN=LOC103162143 PE=4 SV=1 CANONICAL=A0A9J7FZ39-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 430, "start_aa": "Thr", "end_pos": 430, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr430", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272704" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766794", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZ82", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZ82", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"MDAVTYEDVHVNFTHEEWALLDLSQKNLYKDVMLETYWSLTSIGYKWGDHNIEEHCQRSRRNGR", "length": 64, "header": "tr|A0A9J7G3D8-1|A0A9J7G3D8_CRIGR Computationally mapped isoform of Zinc finger protein 120 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100766794 PE=4 SV=1 CANONICAL=A0A9J7FZ82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82/entry#A0A9J7GZ78-1", "sequence": { "sequence": "MLETYWSLTSIGYKWGDHNIEEHCQRSRRNGRYVICHSGYKPYEHKGYGNKHCTSVSLRKNGSSLVVPNMRRHDDCGTSLQLSGFLTSVGTHQEILTGEKPYEYQEYGNSSLCTGSLCTCSLTHSIRKCYNCNQCGQTLSSSSSLQRCEKTHVGRENSKCEPSTKGFSHCRRLQIHNTTNKEEDLCICNQYDKAFGSDSSLKVHQKTHLEGKPYEYNQSYKAFACPTYLQIYNRRHTGEKPYECNQCGKAFAHKSHLLTHLRSHTGEKPYGCNQCGKAFSLKKNLLCHQRSHTGEKPYVCNQCGKAFAEKYKLLSHERIHTGEKPYACNQCGKAFARKSNLLSHERIHTGEKPYECNQCGKAFAQKSHLLSHERNHSGEKPYECNECGKAFAQKSNLHSHERSHSGEKPYGCNQCGKTFAQKSSLQSHERIHTGEKPYACNQCGKAFVQKSSLHRHEIIHTDKKPYECNQCGKAFAAKKNLLGHERNHTGERPYECNQCAKSFALKKYLLSHERIHTGEKPYACNQCDKAFATKSHLLSHKRIHTRQYHMDVINVVISEVSCHVGAGN", "length": 568, "header": "tr|A0A9J7GZ78-1|A0A9J7GZ78_CRIGR Computationally mapped isoform of Zinc finger protein OZF isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766794 PE=3 SV=1 CANONICAL=A0A9J7FZ82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82/entry#A0A9J7K9I5-1", "sequence": { "sequence": "MDAVTYEDVHVNFTHEEWALLDLSQKNLYKDVMLETYWSLTSIGYKWGDHNIEEHCQRSRRNGRKNGSSLVVPNMRRHDDCGTSLQLSGFLTSVGTHQEILTGEKPYEYQEYGNSSLCTGSLCTCSLTHSIRKCYNCNQCGQTLSSSSSLQRCEKTHVGRENSKCEPSTKGFSHCRRLQIHNTTNKEEDLCICNQYDKAFGSDSSLKVHQKTHLEGKPYEYNQSYKAFACPTYLQIYNRRHTGEKPYECNQCGKAFAHKSHLLTHLRSHTGEKPYGCNQCGKAFSLKKNLLCHQRSHTGEKPYVCNQCGKAFAEKYKLLSHERIHTGEKPYACNQCGKAFARKSNLLSHERIHTGEKPYECNQCGKAFAQKSHLLSHERNHSGEKPYECNECGKAFAQKSNLHSHERSHSGEKPYGCNQCGKTFAQKSSLQSHERIHTGEKPYACNQCGKAFVQKSSLHRHEIIHTDKKPYECNQCGKAFAAKKNLLGHERNHTGERPYECNQCAKSFALKKYLLSHERIHTGEKPYACNQCDKAFATKSHLLSHKRIHTRQYHMDVINVVISEVSCHVGAGN", "length": 573, "header": "tr|A0A9J7K9I5-1|A0A9J7K9I5_CRIGR Computationally mapped isoform of Zinc finger protein OZF isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100766794 PE=3 SV=1 CANONICAL=A0A9J7FZ82-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766794", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766794", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ82" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ82", "url": 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##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271860", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271860" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZ88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ88" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757905", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ88", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZ88", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZ88", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZB2-1", "uniprot_ac": "A0A9J7FZB2", "uniprot_id": "A0A9J7FZB2_CRIGR", "mass": { "chemical_mass": 71301.0, "monoisotopic_mass": 71301.0 }, "refseq": { "ac": "XP_027272318", "name": "fibrous sheath CABYR-binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272318" }, "gene_names": [ { "name": "Fscb", "type": "recommended", "evidence": [ { "id": "A0A9J7FZB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZB2" } ] }, { "name": "Fscb", "type": "synonym", "evidence": [ { "id": "XP_027272318", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272318" } ] } ], "protein_names": [ { "name": "Fibrous sheath CABYR-binding protein", "type": "synonym", "evidence": [ { "id": "A0A9J7FZB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZB2/entry#names_and_taxonomy" } ] }, { "name": "fibrous sheath CABYR-binding protein", "type": "synonym", "evidence": [ { "id": "XP_027272318", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272318" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614420.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003507801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507801" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZD4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770076", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZD4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZD4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770076", "url": "https://www.ncbi.nlm.nih.gov/gene/100770076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770076", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770076", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZD4", "url": "https://www.orthodb.org/?gene=A0A9J7FZD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46746:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46746:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003507801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDSKDMGKKQLGPLDEEQLISSHARYSTKDFSFQPNSGFSSFAGHLGLSHIPLALQVFFLIVFSVLLVVVLAKVFSIPSSQGQEQSSQEKVYQELTQLKAGVDRLCRPCPWDWTPFQGSCYFFSVVQKAWNDSATACQKVGAQLVVIKSDEEQNFLQQSSKKRGNTWMGLIDMNKESTWHWVDGSPLTLSFMKYWNKGEPNNLGEEDCAEFKGDGWNDSKCDNKNFWICKKTKTSCPSK", "length": 240, "header": "tr|A0A9J7FZD4-1|A0A9J7FZD4_CRIGR Isoform 1 of CD209 antigen-like protein A OS=Cricetulus griseus OX=10029 GN=LOC100770076 PE=4 SV=1 CANONICAL=A0A9J7FZD4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZD4/entry#A0A9J7FZD4-1", "sequence": { "sequence": "MTDSKDMGKKQLGPLDEEQLISSHARYSTKDFSFQPNSGFSSFAGHLGLSHIPLALQVFFLIVFSVLLVVVLAKVFSIPSSQGQEQSSQEKVYQELTQLKAGVDRLCRPCPWDWTPFQGSCYFFSVVQKAWNDSATACQKVGAQLVVIKSDEEQNFLQQSSKKRGNTWMGLIDMNKESTWHWVDGSPLTLSFMKYWNKGEPNNLGEEDCAEFKGDGWNDSKCDNKNFWICKKTKTSCPSK", "length": 240, "header": "tr|A0A9J7FZD4-1|A0A9J7FZD4_CRIGR Isoform 1 of CD209 antigen-like protein A OS=Cricetulus griseus OX=10029 GN=LOC100770076 PE=4 SV=1 CANONICAL=A0A9J7FZD4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272158" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc85c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0", "locus": {} } ], "crossref": [ { "id": "100769004", "url": "https://www.ncbi.nlm.nih.gov/gene/100769004", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769004", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769004", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZN0", "url": "https://www.orthodb.org/?gene=A0A9J7FZN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13546:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13546:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272158", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKPPAVAAAAAAAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAAAGGAGGSGGGXGSRSSIDSQASLSGPLAGSAAGSGTRDVGDGSSTSSAGSGGSPDHHHHVPPALLPPGPHKGPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRPLETKAKLLEGDKLPPQQAGSGEFRTLRKGFSPYHSESQLASLPPSYQEVLQNGPACPVAELPSPPPAVYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLSEKEKAIVREMCNVVWRKLGDAASTKPSIRQHLSGNQFKGPL", "length": 422, "header": "tr|A0A9J7FZN0-1|A0A9J7FZN0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 85C isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccdc85c PE=3 SV=1 CANONICAL=A0A9J7FZN0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0/entry#A0A9J7FZN0-1", "sequence": { "sequence": "MAKPPAVAAAAAAAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAAAGGAGGSGGGXGSRSSIDSQASLSGPLAGSAAGSGTRDVGDGSSTSSAGSGGSPDHHHHVPPALLPPGPHKGPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRPLETKAKLLEGDKLPPQQAGSGEFRTLRKGFSPYHSESQLASLPPSYQEVLQNGPACPVAELPSPPPAVYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLSEKEKAIVREMCNVVWRKLGDAASTKPSIRQHLSGNQFKGPL", "length": 422, "header": "tr|A0A9J7FZN0-1|A0A9J7FZN0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 85C isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccdc85c PE=3 SV=1 CANONICAL=A0A9J7FZN0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769004", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769004", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZN7-1", "uniprot_ac": "A0A9J7FZN7", "uniprot_id": "A0A9J7FZN7_CRIGR", "mass": { "chemical_mass": 57915.0, "monoisotopic_mass": 57915.0 }, "refseq": { "ac": "XP_027272186", "name": "WD repeat-containing protein 25 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272186" }, "gene_names": [ { "name": "Wdr25", "type": "recommended", "evidence": [ { "id": "A0A9J7FZN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7" } ] }, { "name": "Wdr25", "type": "synonym", "evidence": [ { "id": "XP_027272186", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272186" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 25 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027272186", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272186" }, { "id": "A0A9J7FZN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272186", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272186" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7", "locus": {} } ], "crossref": [ { "id": "100768146", "url": "https://www.ncbi.nlm.nih.gov/gene/100768146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768146", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZN7", "url": "https://www.orthodb.org/?gene=A0A9J7FZN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44566:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44566:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272186", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272186", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLVAYDDSDSETETEPTRSVNSEGQMDDASAVTRSSGMGFASGTVAVTKEGAQHTGDQRLPLARIWRSHPGSCPSQRLQWPSKDPDAAFSISKPPHPSWMSRAPAGHVPLAAACLKSVKSAWEARSSSSHTQSEAESTAGNASSSQRKRGEDCVVPYTPKRLRQLQAQNPEDGGKDKEPPGPPAGYAPAPLRVPPTVSEFIQPYLNSQHRETKVPKRVLFHLRGHRGPVNSIQWCPVFRKSHMLLSASMDKTFKVWNAVDSGHCLQTYSVHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFSGRSDFRVTTLKFHPKDHNVFLCGGFSSEIKAWDMRTGKVVKGYKATIQQTLDILFLQEGSSFLSSTDASTRDSADRTIIAWDFRTAAKISNQIYHERYTCPSLALHPREPVFLAQSNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTARRACTLQGHAQACLGTTYHPVLPSVLGTCSWGGDIKIWH", "length": 526, "header": "tr|A0A9J7FZN7-1|A0A9J7FZN7_CRIGR Isoform 1 of WD repeat-containing protein 25 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr25 PE=4 SV=1 CANONICAL=A0A9J7FZN7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7/entry#A0A9J7FZN7-1", "sequence": { "sequence": "MASLVAYDDSDSETETEPTRSVNSEGQMDDASAVTRSSGMGFASGTVAVTKEGAQHTGDQRLPLARIWRSHPGSCPSQRLQWPSKDPDAAFSISKPPHPSWMSRAPAGHVPLAAACLKSVKSAWEARSSSSHTQSEAESTAGNASSSQRKRGEDCVVPYTPKRLRQLQAQNPEDGGKDKEPPGPPAGYAPAPLRVPPTVSEFIQPYLNSQHRETKVPKRVLFHLRGHRGPVNSIQWCPVFRKSHMLLSASMDKTFKVWNAVDSGHCLQTYSVHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFSGRSDFRVTTLKFHPKDHNVFLCGGFSSEIKAWDMRTGKVVKGYKATIQQTLDILFLQEGSSFLSSTDASTRDSADRTIIAWDFRTAAKISNQIYHERYTCPSLALHPREPVFLAQSNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTARRACTLQGHAQACLGTTYHPVLPSVLGTCSWGGDIKIWH", "length": 526, "header": "tr|A0A9J7FZN7-1|A0A9J7FZN7_CRIGR Isoform 1 of WD repeat-containing protein 25 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr25 PE=4 SV=1 CANONICAL=A0A9J7FZN7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQ92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7/entry#A0A9J7JQ92-1", "sequence": { "sequence": "MASLVAYDDSDSETETEPTRSVNSEGQMDDASAVTRSSGMGFASGTVAVTKEGAQHTGDQRLPLARIWRSHPGSCPSQRLQWPSKDPDAAFSISKPPHPSWMSRAPAGHVPLAAACLKSVKSAWEARSSSSHTQSEAESTAGNASSSQRKRGEDCVVPYTPKRLRQLQAQNPEDGGKDKEPPGPPAGYAPAPLRVPPTVSEFIQPYLNSQHRETKVPKRVLFHLRGHRGPVNSIQWCPVFRKSHMLLSASMDKTFKVVKGYKATIQQTLDILFLQEGSSFLSSTDASTRDSADRTIIAWDFRTAAKISNQIYHERYTCPSLALHPREPVFLAQSNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTARRACTLQGHAQACLGTTYHPVLPSVLGTCSWGGDIKIWH", "length": 433, "header": "tr|A0A9J7JQ92-1|A0A9J7JQ92_CRIGR Computationally mapped isoform of WD repeat-containing protein 25 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr25 PE=4 SV=1 CANONICAL=A0A9J7FZN7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZN7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495581", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495581" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751981", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751981", "url": "https://www.ncbi.nlm.nih.gov/gene/100751981", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100751981", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751981", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003495581", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495581", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCYGNYFGGLGYGYGGLGYGYGGLGYGYGGLGYGYGGLGYGYGGLGCGYGCGCGSRYAYSTYRPCCYGRISGFY", "length": 74, "header": "tr|A0A9J7FZQ9-1|A0A9J7FZQ9_CRIGR Isoform 1 of Keratin-associated protein 6-3-like OS=Cricetulus griseus OX=10029 GN=LOC100751981 PE=4 SV=1 CANONICAL=A0A9J7FZQ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9/entry#A0A9J7FZQ9-1", "sequence": { "sequence": "MCYGNYFGGLGYGYGGLGYGYGGLGYGYGGLGYGYGGLGYGYGGLGCGYGCGCGSRYAYSTYRPCCYGRISGFY", "length": 74, "header": "tr|A0A9J7FZQ9-1|A0A9J7FZQ9_CRIGR Isoform 1 of Keratin-associated protein 6-3-like OS=Cricetulus griseus OX=10029 GN=LOC100751981 PE=4 SV=1 CANONICAL=A0A9J7FZQ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZQ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751981", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751981", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZR3-1", "uniprot_ac": "A0A9J7FZR3", "uniprot_id": "A0A9J7FZR3_CRIGR", "mass": { "chemical_mass": 652452.0, "monoisotopic_mass": 652452.0 }, "refseq": { "ac": "XP_027272451", "name": "protein AHNAK2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272451" }, "gene_names": [ { "name": "Ahnak2", "type": "recommended", "evidence": [ { "id": "A0A9J7FZR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ] }, { "name": "Ahnak2", "type": "synonym", "evidence": [ { "id": "XP_027272451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272451" } ] } ], "protein_names": [ { "name": "Protein AHNAK2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FZR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3/entry#names_and_taxonomy" } ] }, { "name": "protein AHNAK2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027272451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272451" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027272451.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272451" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ahnak2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3", "locus": {} } ], "crossref": [ { "id": "100752400", "url": "https://www.ncbi.nlm.nih.gov/gene/100752400", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752400", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZR3", "url": "https://www.orthodb.org/?gene=A0A9J7FZR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23348:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23348:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027272451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272451", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCDCFHVVLPTWPGAPGSVSGRQLQQQEPGAETGENDSVTEGPGGEIIRPRPQGSSPVYEYTPEGAGLGAQENSQGRRSSSGRRRSWWKRDSGESTGFSSMSHSEGMQEATEVTLKTEAESGASGYSVTGGGDQGLFVKQVLKDSSAAKLFSLREGDQLLSATIFFDHMKYEDALKILQYSEPYKVQFRIKRKLSASKGEESAVHHSQQGLKGQENQDIADGYMETPTKTLESDGDRERLISKSRDGRQRRPQDRLSWPKFQALRSKRGPGPRRSHSSSEASEHRGTRDVSPTSTDTEAQLTADSQEQTSTTARGRRRFLNLRFGMGSGQGENTAKQTHRETQDRQDHAGEQHETQPQEHETQETGVMTTLTAQMPKEHSHSSLNKEDVGEVEVKSQRQQRKKKHEAKEAKEKTVCEPRGEPGPGRSWDDEWEEVQSLEIGIARLSLQDKPEHGSTQFSLCDTLSTEHGFSRKMTEGEMEETRWRESGYRKKIDMQVTDQTKEETRHSTGKGGGREDIGRDTEHKEGGDSEEVTDMGLIRVRMPKFRMPSFGWSPTKEAITTQKERKDLEKKDNEKLKEEMETYKMKDIKERETTGKKQNTLGQESRETKERTRDKSEATKKEMNFKMPKFKMPTFGVSMHGEPNEEASLEVAAPKLEAEVTLPSMQDDIKTTDLSIKLPIDNMEVKADHVGVKLSQLPEGELPAQAAAGADLKSHILKVHMPDLNMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKVPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGTHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVILPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALSDKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSLGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHIDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMTKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGLVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGLHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGLSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHIDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEITLPSVQGDLKTPDLSIQLPSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADITLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGLSARGKPTVEASFVVAAPKVETDVTLPSMQGDLKTPDLSIQLPSADLEVKAGQLGVKLPQGQLPEGELPTDDAGGASIKDLLPNVLVPSPKMPKVDLKNPHVDLMVPKVDVMCPKGDVSGPKVEGSLPDVDLVSSHFEHPEVSVSLPVSSCSARIFFPKFHKPKFVISLPASSVDCDLSVSEPVLSSAVNAVPMSDLFGTEVLGSDSPLSHDLEKSLVDSAVNSQLSSSDLDRNASSFKLPGIQLRSFNLSPKKHAGSISDAESLPGDPVPSVALSVVETETQVGTCASVVESQQCVSMEKDTEKGRTRKLSFSMPRLGLPKLKGSKGRAGVPQADVKPSLIGTTAGGDLLVLRTTVSDTHVLASPSECVTTETCISSSSMTAEATASKADLQLLQGVQDVRGDSKSHMFADVSVSQPLGELTAPVMGDLQPSCRQGGNAPTMDCPEMDPTAKEMSTDSHERWFKMPKFRVPGFRRSSSKEREGTGGQEASQTQPPAAGKPLEAEVATATVQLSHVPETKVEACVSLGSPEEGTSVKSLESPTYADVVKRDLHGTGSRLLSSPAAMSQTHLPAPEPGTHPAKDSSLEMSGVRVSEAQLPPEGTAKRQHPGPGGDILAEAEARTGSWPCQPQGPLRLKASLTDMPSQVSVVSTRQLWEDSVLTVTFPKLKVPKFSFHSSSSEADVFFPVVREVQCAQAAIDSATCKDGPGLWEASLLKTGAEDPRGPPASLEQPEASPISKVRVHIQGSQAESQEVTICHRVEREGADSSAQQAFSTQIVRESEIPASAVQTPSYGFSLLKVKIPEPPVQASVYTVIPDSQTQEGLSGAPMPGAAGRHSIPGDIPPDSSEPFEMISSSAGMPPMSLTPELPTGPQLVDSTSDEEPAEILEFSEDSQEVKTPEMATKQKPEGKKASLLWSWLPSIGFSSVEEMTTDSRDDTQRPAPVHVQPAARLDPELPRKQEKTGWFRFPKLGFSSSPTKKSRSTEDEECQAEPKAQEETITFFDARESFSPEEEEEAKPEVTSVRPGSKAMVASSARTELVLLEQIRDTSDKSTPRPVAK", "length": 6223, "header": "tr|A0A9J7FZR3-1|A0A9J7FZR3_CRIGR Isoform 1 of Protein AHNAK2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ahnak2 PE=4 SV=1 CANONICAL=A0A9J7FZR3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3/entry#A0A9J7FZR3-1", "sequence": { "sequence": "MCDCFHVVLPTWPGAPGSVSGRQLQQQEPGAETGENDSVTEGPGGEIIRPRPQGSSPVYEYTPEGAGLGAQENSQGRRSSSGRRRSWWKRDSGESTGFSSMSHSEGMQEATEVTLKTEAESGASGYSVTGGGDQGLFVKQVLKDSSAAKLFSLREGDQLLSATIFFDHMKYEDALKILQYSEPYKVQFRIKRKLSASKGEESAVHHSQQGLKGQENQDIADGYMETPTKTLESDGDRERLISKSRDGRQRRPQDRLSWPKFQALRSKRGPGPRRSHSSSEASEHRGTRDVSPTSTDTEAQLTADSQEQTSTTARGRRRFLNLRFGMGSGQGENTAKQTHRETQDRQDHAGEQHETQPQEHETQETGVMTTLTAQMPKEHSHSSLNKEDVGEVEVKSQRQQRKKKHEAKEAKEKTVCEPRGEPGPGRSWDDEWEEVQSLEIGIARLSLQDKPEHGSTQFSLCDTLSTEHGFSRKMTEGEMEETRWRESGYRKKIDMQVTDQTKEETRHSTGKGGGREDIGRDTEHKEGGDSEEVTDMGLIRVRMPKFRMPSFGWSPTKEAITTQKERKDLEKKDNEKLKEEMETYKMKDIKERETTGKKQNTLGQESRETKERTRDKSEATKKEMNFKMPKFKMPTFGVSMHGEPNEEASLEVAAPKLEAEVTLPSMQDDIKTTDLSIKLPIDNMEVKADHVGVKLSQLPEGELPAQAAAGADLKSHILKVHMPDLNMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKVPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGTHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVILPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALSDKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSLGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHIDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVAKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMTKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGLVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGLHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGLSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGLKLPQGQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHIDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLEVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEVTLPSVQGDLKTPDLSIQLPSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSSPGKPTVDASLDVAAPKLQAEITLPSVQGDLKTPDLSIQLPSADLEVKTGQVGVMLPEVQLPEGELPAQAAAGAGIKGHLPKVQMPSLKMPKVDLKGPHVDQKVPKVDMKGPKGEVSGPEVDVSLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADVTLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLALAEKDLAAKDSKFKMPKFKMPSFGVSVPGKPTVDASLDVAAPKLGADVTLPSVQGDLKTPDLSIQLSSADLEVKTGQVGVMLPQGQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVALKGPRVDMKGPKCEVSGPEVEASLPGVEVDIQVPGAKLEGDLALADKDLAAKDSKFKMPKFKMPSFGVSAPGKPTVDASLEVASPKLEADITLPPVQGDLKTPDLSIQLPSADLEVKAGQVGVQLPEVQLPEGELPAQAAAGADLKGHLPKVHMPGLKMPKVDLKGPHVELKVPKVDVKGPKGEVSGPEVDASLPGVEVDIQAPGAKLEGDLSLAEKDLAAKDSKFKMPKFKMPSFGLSARGKPTVEASFVVAAPKVETDVTLPSMQGDLKTPDLSIQLPSADLEVKAGQLGVKLPQGQLPEGELPTDDAGGASIKDLLPNVLVPSPKMPKVDLKNPHVDLMVPKVDVMCPKGDVSGPKVEGSLPDVDLVSSHFEHPEVSVSLPVSSCSARIFFPKFHKPKFVISLPASSVDCDLSVSEPVLSSAVNAVPMSDLFGTEVLGSDSPLSHDLEKSLVDSAVNSQLSSSDLDRNASSFKLPGIQLRSFNLSPKKHAGSISDAESLPGDPVPSVALSVVETETQVGTCASVVESQQCVSMEKDTEKGRTRKLSFSMPRLGLPKLKGSKGRAGVPQADVKPSLIGTTAGGDLLVLRTTVSDTHVLASPSECVTTETCISSSSMTAEATASKADLQLLQGVQDVRGDSKSHMFADVSVSQPLGELTAPVMGDLQPSCRQGGNAPTMDCPEMDPTAKEMSTDSHERWFKMPKFRVPGFRRSSSKEREGTGGQEASQTQPPAAGKPLEAEVATATVQLSHVPETKVEACVSLGSPEEGTSVKSLESPTYADVVKRDLHGTGSRLLSSPAAMSQTHLPAPEPGTHPAKDSSLEMSGVRVSEAQLPPEGTAKRQHPGPGGDILAEAEARTGSWPCQPQGPLRLKASLTDMPSQVSVVSTRQLWEDSVLTVTFPKLKVPKFSFHSSSSEADVFFPVVREVQCAQAAIDSATCKDGPGLWEASLLKTGAEDPRGPPASLEQPEASPISKVRVHIQGSQAESQEVTICHRVEREGADSSAQQAFSTQIVRESEIPASAVQTPSYGFSLLKVKIPEPPVQASVYTVIPDSQTQEGLSGAPMPGAAGRHSIPGDIPPDSSEPFEMISSSAGMPPMSLTPELPTGPQLVDSTSDEEPAEILEFSEDSQEVKTPEMATKQKPEGKKASLLWSWLPSIGFSSVEEMTTDSRDDTQRPAPVHVQPAARLDPELPRKQEKTGWFRFPKLGFSSSPTKKSRSTEDEECQAEPKAQEETITFFDARESFSPEEEEEAKPEVTSVRPGSKAMVASSARTELVLLEQIRDTSDKSTPRPVAK", "length": 6223, "header": "tr|A0A9J7FZR3-1|A0A9J7FZR3_CRIGR Isoform 1 of Protein AHNAK2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ahnak2 PE=4 SV=1 CANONICAL=A0A9J7FZR3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "pmid": "" }, { "name": "costamere", "id": "GO:0043034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043034", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of RNA splicing", "id": "GO:0043484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043484", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5396, "end_pos": 5398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5411, "end_pos": 5413, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FZR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZR3" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 179, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 }, { "start_pos": 5396, "end_pos": 5398 }, { "start_pos": 5411, "end_pos": 5413 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G1W4-1", "uniprot_ac": "A0A9J7G1W4", "uniprot_id": "A0A9J7G1W4_CRIGR", "mass": { "chemical_mass": 98287.0, "monoisotopic_mass": 98287.0 }, "refseq": { "ac": "XP_027272467", "name": "phosphofurin acidic cluster sorting protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272467" }, "gene_names": [ { "name": "Pacs2", "type": "recommended", "evidence": [ { "id": "A0A9J7G1W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ] }, { "name": "Pacs2", "type": "synonym", "evidence": [ { "id": "XP_027272467", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272467" } ] } ], "protein_names": [ { "name": "Phosphofurin acidic cluster sorting protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G1W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#names_and_taxonomy" } ] }, { "name": "phosphofurin acidic cluster sorting protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027272467", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272467" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272467", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272467" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pacs2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1W4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1W4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753901", "url": "https://www.ncbi.nlm.nih.gov/gene/100753901", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753901", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753901", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G1W4", "url": "https://www.orthodb.org/?gene=A0A9J7G1W4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13280:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13280:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10254", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10254", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25332", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25332", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272467", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272467", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G495", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G495-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G495-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTSRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 892, "header": "tr|A0A9J7G1W4-1|A0A9J7G1W4_CRIGR Isoform 1 of Phosphofurin acidic cluster sorting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A8C2MXM6-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 891, "header": "tr|A0A8C2MXM6-1|A0A8C2MXM6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A9J7FZS4-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 883, "header": "tr|A0A9J7FZS4-1|A0A9J7G1W4_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A9J7FZZ0-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTSRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 891, "header": "tr|A0A9J7FZZ0-1|A0A9J7FZZ0_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A9J7G1W4-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTSRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 892, "header": "tr|A0A9J7G1W4-1|A0A9J7G1W4_CRIGR Isoform 1 of Phosphofurin acidic cluster sorting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G495-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A9J7G495-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTSRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPSQGIGAELMGLQVDYWTAAQPADRKRDAEKKDLPTTKNTLKCTFRSLQVSRLPSSGETATTPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF", "length": 884, "header": "tr|A0A9J7G495-1|A0A9J7G495_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4/entry#A0A9J7H0Z2-1", "sequence": { "sequence": "MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLNLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVPEVEEDLDLLYDTLDVDHPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSPADVPEKMRSLGGQQPSDSTSDTMVLSSPAPREPSGQPENSPEAETITLDVFTEKLPPSGRITKTESLVIPSTSRSETKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQIPRKTVYDQLNHILVSDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSVSTSPAAKEASPTPPSSPSVSGGLSSPRSAGCPAVARLQPHLPCP", "length": 757, "header": "tr|A0A9J7H0Z2-1|A0A9J7H0Z2_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs2 PE=3 SV=1 CANONICAL=A0A9J7G1W4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 725, "start_aa": "Thr", "end_pos": 725, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr725", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZS4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZS4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753901", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753901", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "pmid": "" }, { "name": "endoplasmic reticulum calcium ion homeostasis", "id": "GO:0032469", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032469", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "pmid": "" }, { "name": "mitochondrion-endoplasmic reticulum membrane tethering", "id": "GO:1990456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990456", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G1W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" }, { "id": "PF10254", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10254" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphofurin acidic cluster sorting protein 1/2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 474, "end_pos": 888, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G1W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1W4" }, { "id": "PF25332", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25332" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphofurin acidic cluster sorting protein 1/2 N-terminal C2", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 179, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 725 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 123, "end_pos": 125 }, { "start_pos": 197, "end_pos": 199 }, { "start_pos": 496, "end_pos": 498 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7FZW3-1", "uniprot_ac": "A0A9J7FZW3", "uniprot_id": "A0A9J7FZW3_CRIGR", "mass": { "chemical_mass": 16528.0, "monoisotopic_mass": 16528.0 }, "refseq": { "ac": "XP_003501625", "name": "anaphase-promoting complex subunit 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501625" }, "gene_names": [ { "name": "LOC100752128", "type": "recommended", "evidence": [ { "id": "A0A9J7FZW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3" } ] }, { "name": "LOC100752128", "type": "synonym", "evidence": [ { "id": "XP_003501625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501625" } ] } ], "protein_names": [ { "name": "Anaphase-promoting complex subunit 15", "type": "synonym", "evidence": [ { "id": "A0A9J7FZW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3/entry#names_and_taxonomy" } ] }, { "name": "anaphase-promoting complex subunit 15", "type": "synonym", "evidence": [ { "id": "XP_003501625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501625" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613853.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003501625.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501625" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752128", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FZW3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FZW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752128", "url": "https://www.ncbi.nlm.nih.gov/gene/100752128", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752128", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752128", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FZW3", "url": "https://www.orthodb.org/?gene=A0A9J7FZW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22526", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22526", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22526:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22526:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15243", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15243", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003501625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501625", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FZW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKLRLREVKYIGQSQTARTMPTLFPSLFCCVTETLWFNLNLPWEQQEQQDQQEQQQQAWIQSITEKDHNLVPIGKPASEHYDDEKEEEVDDKDNEKDSEDDEGVQDMDEMNDYNESPGDGEVNEVDIEGNEQDQDQWMI", "length": 140, "header": "tr|A0A9J7FZW3-1|A0A9J7FZW3_CRIGR Isoform 1 of Anaphase-promoting complex subunit 15 OS=Cricetulus griseus OX=10029 GN=LOC100752128 PE=3 SV=1 CANONICAL=A0A9J7FZW3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW3/entry#A0A9J7FZW3-1", "sequence": { "sequence": "MRKLRLREVKYIGQSQTARTMPTLFPSLFCCVTETLWFNLNLPWEQQEQQDQQEQQQQAWIQSITEKDHNLVPIGKPASEHYDDEKEEEVDDKDNEKDSEDDEGVQDMDEMNDYNESPGDGEVNEVDIEGNEQDQDQWMI", "length": 140, "header": "tr|A0A9J7FZW3-1|A0A9J7FZW3_CRIGR Isoform 1 of Anaphase-promoting complex subunit 15 OS=Cricetulus griseus OX=10029 GN=LOC100752128 PE=3 SV=1 CANONICAL=A0A9J7FZW3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614316.1) annotated using gene prediction method: Gnomon. 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Activity on G(z)-alpha and G(i)-alpha-1 is inhibited by palmitoylation of the G-protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G019", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019#function" }, { "database": "UniProtKB", "id": "ARBA00025480", "url": "https://www.uniprot.org/uniprotkb/ARBA00025480#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G019", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rgs4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019", "locus": {} } ], "crossref": [ { "id": "cd08714", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08714", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770449", "url": "https://www.ncbi.nlm.nih.gov/gene/100770449", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770449", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770449", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G019", "url": "https://www.orthodb.org/?gene=A0A9J7G019", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845:SF184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845:SF184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272886", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272886", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G019", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G019-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSVPLRGSLERQSAASGAEPADLPSDWLPGRGWAIKETPTGLGARGSEDSGRIFAXSRSYCAQNRNQHSFCCLSVLAANPTXLNTMCKGLAGLPASCLRSAKDMKHRLGFLLQKSDSCEHSSSHSKKDKVVTCQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTSPSSCGVEKQKAAKSSADCASLFPQCA", "length": 291, "header": "tr|A0A9J7G019-1|A0A9J7G019_CRIGR Isoform 1 of Regulator of G-protein signaling 4 OS=Cricetulus griseus OX=10029 GN=Rgs4 PE=4 SV=1 CANONICAL=A0A9J7G019-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G019-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019/entry#A0A9J7G019-1", "sequence": { "sequence": "MSSVPLRGSLERQSAASGAEPADLPSDWLPGRGWAIKETPTGLGARGSEDSGRIFAXSRSYCAQNRNQHSFCCLSVLAANPTXLNTMCKGLAGLPASCLRSAKDMKHRLGFLLQKSDSCEHSSSHSKKDKVVTCQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTSPSSCGVEKQKAAKSSADCASLFPQCA", "length": 291, "header": "tr|A0A9J7G019-1|A0A9J7G019_CRIGR Isoform 1 of Regulator of G-protein signaling 4 OS=Cricetulus griseus OX=10029 GN=Rgs4 PE=4 SV=1 CANONICAL=A0A9J7G019-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G019" }, { "id": "PS50132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RGS", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 264, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G029-1", "uniprot_ac": "A0A9J7G029", "uniprot_id": "A0A9J7G029_CRIGR", "mass": { "chemical_mass": 26696.0, "monoisotopic_mass": 26696.0 }, "refseq": { "ac": "XP_027272555", "name": "uncharacterized protein LOC113835832 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272555" }, "gene_names": [ { "name": "LOC113835832", "type": "recommended", "evidence": [ { "id": "A0A9J7G029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ] }, { "name": "LOC113835832", "type": "synonym", "evidence": [ { "id": "XP_027272555", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272555" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113835832 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113835832 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027272555", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272555" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027272555.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272555" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835832", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029", "locus": {} } ], "crossref": [ { "id": "A0A9J7G029", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G029", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835832", "url": "https://www.ncbi.nlm.nih.gov/gene/113835832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835832", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G029", "url": "https://www.orthodb.org/?gene=A0A9J7G029", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272555", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G029-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVWSVIRHQLLTGEREDYGSWTTGASRPGGIHSHLGGLGSGPSPLDPVRLTSLIESVLTTHQPTWDDCEQILQVILTSKEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQSKNLEPRWKGPYIVLLTTPTALKVDSIAAWIHASHVKPARPTDSATASEWTAHCTQNPLKIRLSRTPSY", "length": 238, "header": "tr|A0A9J7G029-1|A0A9J7G029_CRIGR Isoform 1 of Uncharacterized protein LOC113835832 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835832 PE=4 SV=1 CANONICAL=A0A9J7G029-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G029-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029/entry#A0A9J7G029-1", "sequence": { "sequence": "MVWSVIRHQLLTGEREDYGSWTTGASRPGGIHSHLGGLGSGPSPLDPVRLTSLIESVLTTHQPTWDDCEQILQVILTSKEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQSKNLEPRWKGPYIVLLTTPTALKVDSIAAWIHASHVKPARPTDSATASEWTAHCTQNPLKIRLSRTPSY", "length": 238, "header": "tr|A0A9J7G029-1|A0A9J7G029_CRIGR Isoform 1 of Uncharacterized protein LOC113835832 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835832 PE=4 SV=1 CANONICAL=A0A9J7G029-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835832", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835832", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" }, { "id": "PF02093", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core shell protein Gag P30", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 125, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G029" }, { "id": "PF18697", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Murine leukemia virus integrase C-terminal", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 209, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G045-1", "uniprot_ac": "A0A9J7G045", "uniprot_id": "A0A9J7G045_CRIGR", "mass": { "chemical_mass": 38821.0, "monoisotopic_mass": 38821.0 }, "refseq": { "ac": "XP_003501251", "name": "kelch domain-containing protein 8A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501251" }, "gene_names": [ { "name": "Klhdc8a", "type": "recommended", "evidence": [ { "id": "A0A9J7G045", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045" } ] }, { "name": "Klhdc8a", "type": "synonym", "evidence": [ { "id": "XP_003501251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501251" } ] } ], "protein_names": [ { "name": "Kelch domain-containing protein 8A", "type": "synonym", "evidence": [ { "id": "A0A9J7G045", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045/entry#names_and_taxonomy" } ] }, { "name": "kelch domain-containing protein 8A", "type": "synonym", "evidence": [ { "id": "XP_003501251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501251" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613838.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501251", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501251" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhdc8a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045", "locus": {} } ], "crossref": [ { "id": "A0A9J7G045", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G045", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754881", "url": "https://www.ncbi.nlm.nih.gov/gene/100754881", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754881", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754881", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPYPVHH", "url": "https://omabrowser.org/oma/group/FPYPVHH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G045", "url": "https://www.orthodb.org/?gene=A0A9J7G045", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46260:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46260:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003501251", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501251", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G045-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTSLPSLPTARAGVAVTALGKRIMVIGGVGTNQLPLKVVEMYNIDEGKWKKRSVLREAAMGISVTAKDYRVYAAGGMGLDLRPHNYLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIESRSWTKFPNIPCKRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRVIVAGGLGNQPTVLETAEAFHPEKNKWEALPAMPTPRCACSSIVFKNCLLAVGGVSQGLSDAVEALYVSES", "length": 350, "header": "tr|A0A9J7G045-1|A0A9J7G045_CRIGR Isoform 1 of Kelch domain-containing protein 8A OS=Cricetulus griseus OX=10029 GN=Klhdc8a PE=4 SV=1 CANONICAL=A0A9J7G045-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G045-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045/entry#A0A9J7G045-1", "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTSLPSLPTARAGVAVTALGKRIMVIGGVGTNQLPLKVVEMYNIDEGKWKKRSVLREAAMGISVTAKDYRVYAAGGMGLDLRPHNYLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIESRSWTKFPNIPCKRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRVIVAGGLGNQPTVLETAEAFHPEKNKWEALPAMPTPRCACSSIVFKNCLLAVGGVSQGLSDAVEALYVSES", "length": 350, "header": "tr|A0A9J7G045-1|A0A9J7G045_CRIGR Isoform 1 of Kelch domain-containing protein 8A OS=Cricetulus griseus OX=10029 GN=Klhdc8a PE=4 SV=1 CANONICAL=A0A9J7G045-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 163, "start_aa": "Thr", "end_pos": 163, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr163", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G045" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754881", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754881", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A723-1", "protein_name": "Kelch domain containing 8A", "gene_name": "KLHDC8A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDADTMEVANTRDFQWKTLSPLPSRRVYSTLVEVGGQVFAIGGCDDNGVPMDCFEVYSPEADQWTSLPPMPTARAGVAVATLGKRIMVIGGVGANQVPLKIVEMYNVDEGKWKKRNSLREAAMGISVTAKDYRVYAAGGMGADLRPHNYLQHYDMLKDIWVSLAAMPTARYAATSFLRGTKIYVLGGRQSKYAINAFEVFDTETRSWTKFPNIPNKRAFSSFVPTEDKLFSLGGLRQGRLYRQPKFMRTVDVFDFEQGGWMKMERSFYLKKRRADFVAGYLKGRVVVAGGLGNQPTVLESAEAFHPEKNKWESLPPMPTPRCACSSIVLRGCLLLAVGGVSQGLSSAVEALCLSDS", "length": 356 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9RVP3-1", "protein_name": "Kelch domain containing 8A", "gene_name": "KLHDC8A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVPTVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTALPPLPTARAGVAVTALGKRIMVIGGVGASQLPLKVVEMYNIDEGKWKKRSALREAAMGISVTAKDYRVYAAGGMGLDLRPHNHLQHYDMLKDMWVSLAHMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIETRSWTKFPNIPCKRAFSSFVTLDDRLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGSLSGRVIVAGGLGNQPTVLETAEAFHPGKSRWEALPAMPTPRCACSSLVLRNCLLAVGGVNQGLSDAVEALCVSDS", "length": 350 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F2Z3R0-1", "protein_name": "Kelch domain containing 8A", "gene_name": "Klhdc8a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTSLPSLPTARAGVAITALGKRIMVIGGVGTNQLPVKVVEMYNIDEGKWKKRSVLREAAMGISVTAKDYRVYAAGGMGLDLRPHNYLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIESRSWTKFPNIPCKRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRVIVAGGLGNQPTVLETAEAFHPEKNKWEALPPMPTPRCACSSIVFKNCLLAVGGVSQGLSDAVEALFVSDS", "length": 350 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3L9W7-1", "protein_name": "Kelch domain containing 8A", "gene_name": "KLHDC8A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTALPPLPTARAGVAVTALGKRIMVIGGVGTSQLPLKVVEMYNIDEGKWKKRSMLREAAMGISVTAKDYRVYAAGGMGLDLRPHNHLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIETRSWTKFPNIPCKRAFSSFVTLDDRLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGSVSGRVIVAGGLGNQPTVLETAEAFHPGKNKWEVLPAMPTPRCACSSIVIKNCLLAVGGVNQGLSDAVEALCVSDS", "length": 350 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8IYD2-1", "protein_name": "Kelch domain-containing protein 8A", "gene_name": "KLHDC8A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTALPRLPTARAGVAVTALGKRIMVIGGVGTNQLPLKVVEMYNIDEGKWKKRSMLREAAMGISVTAKDYRVYAAGGMGLDLRPHNHLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIETRSWTKFPNIPYKRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGSLSGRVIVAGGLGNQPTVLETAEAFHPGKNKWEILPAMPTPRCACSSIVVKNCLLAVGGVNQGLSDAVEALCVSDS", "length": 350 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91XA8-1", "protein_name": "Kelch domain-containing protein 8A", "gene_name": "Klhdc8a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTSLPSLPTARAGVAITALGKRIMVIGGVGTNQLPVKVVEMYNIDEGKWKKRSVLREAAMGISVTAKDYRVYAAGGMGLDLRPHNYLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIESRSWTKFPNIPCKRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRVIVAGGLGNQPTVLETAEAFHPEKNKWEALPPMPTPRCACSSIVFKNCLLAVGGVSQGLSDAVEALFVSDS", "length": 350 }, "evidence": [ { "id": "A0A9J7G045", "url": "https://omabrowser.org/oma/group/A0A9J7G045/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615274.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650602" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764406", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6", "locus": {} } ], "crossref": [ { "id": "A0A9J7G2A6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G2A6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764406", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764406", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G0C9", "url": "https://www.orthodb.org/?gene=A0A9J7G0C9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G299", "url": "https://www.orthodb.org/?gene=A0A9J7G299", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G2A6", "url": "https://www.orthodb.org/?gene=A0A9J7G2A6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007650602", "url": 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"MKKLCVFIICFLLLKFSLFLCSLRETTCFWRMKQSEEDEGELRTDCGFILFINPYPIEEDFYNTLIHFRIPTRKYEYFLVLLFATDEINRNPFILPNMSIIFSIISGMCFQTLDTIDLRYSPKYSFFRPPNYDCRKSPCNVALTGPSWTTSVRLTTYTTYPQIFFGPFHPILSDNVLFPYVYQVAHKDACLPRAMVSLMLYFAWIWIGLVISDDDQGIQFLSDLREEMQRKGICLAFVNMIPDSIQLYTKRAVIYDNQIMTSSAKVVAIYGEMNSTLEVSFRRWAYLGVQRIWVTTSQWDVITSNKDFSLDPFHGTITYMHHHGKVSKFMNFMRTLNTSKYPVDISQMKMKWNFFNCSVSDTNYSSMNHYLYNTTLEWLSQHKFDMVWSEEGYNLYNAVYAVAHTYHEIILQQLESQNIAKPTGVFRDCHQMASLLKYRVFTNPVGELVDMNLRKKLCANYDIYNIWNFPQGFGLKVKIGSYSSYLPQSQQLHISEDLELSMGSNLPQVPTSTCSVTCTPGFRKFYQEQAPDCCFDCAWCPENEISNETDMEQCVRCPDDQYSSAEHTHCLQRHVSFLAYEDPLGMTLAFMSLCFSALTALVLGAFVKYNGTPIVKANNRTLSYILLVSITFCFLCALFFIGHPNTVTCILQQTTFGVFFTVAVSTVLAKTITVVLAFKLTTPGRRMRRMLLSGVPNFVIPICTLFQSVVCGIWLVTSPPFIDTDTSEHGQIIIVCNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFCCVWVTFLPVYHSTKGKVMVAVEVFSILASCAGLLGCIFVPKCYVILIRPYSNSLQKYKDKLLY", "length": 849, "header": "tr|A0A9J7G2A6-1|A0A9J7G2A6_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100764406 PE=3 SV=1 CANONICAL=A0A9J7G2A6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6/entry#A0A9J7G0C9-1", "sequence": { "sequence": "MKKLCVFIICFLLLKFSLFLCSLRETTCFWRMKQSEEDEGELRTDCGFILFINPYPIEEDFYNTLIHFRIPTRKYEYFLVLLFATDEINRNPFILPNMSIIFSIISGMCFQTLDTIDLRYSPKYSFFRPPNYDCRKSPCNVALTGPSWTTSVRLTTYTTYPQIFFGPFHPILSDNVLFPYVYQVAHKDACLPRAMVSLMLYFAWIWIGLVISDDDQGIQFLSDLREEMQRKGICLAFVNMIPDSIQLYTKRAVIYDNQIMTSSAKVVAIYGEMNSTLEVSFRRWAYLGVQRIWVTTSQWDVITSNKDFSLDPFHGTITYMHHHGKVSKFMNFMRTLNTSKYPVDISQMKMKWNFFNCSVSDTNYSSMNHYLYNTTLEWLSQHKFDMVWSEEGYNLYNAVYAVAHTYHEIILQQLESQNIAKPTGVFRDCHQMASLLKYRVFTNPVGELVDMNLRKKLCANYDIYNIWNFPQGFGLKVKIGSYSSYLPQSQQLHISEDLELSMGSILVPTSTCSVTCTPGFRKFYQEQAPDCCFDCAWCPENEISNETDMEQCVRCPDDQYSSAEHTHCLQRHVSFLAYEDPLGMTLAFMSLCFSALTALVLGAFVKYNGTPIVKANNRTLSYILLVSITFCFLCALFFIGHPNTVTCILQQTTFGVFFTVAVSTVLAKTITVVLAFKLTTPGRRMRRMLLSGVPNFVIPICTLFQSVVCGIWLVTSPPFIDTDTSEHGQIIIVCNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFCCVWVTFLPVYHSTKGKVMVAVEVFSILASCAGLLGCIFVPKCYVILIRPYSNSLQKYKDKLLY", "length": 847, "header": "tr|A0A9J7G0C9-1|A0A9J7G2A6_CRIGR Computationally mapped isoform of Vomeronasal type-2 receptor 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100764406 PE=3 SV=1 CANONICAL=A0A9J7G2A6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G299-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6/entry#A0A9J7G299-1", "sequence": { "sequence": "MKKLCVFIICFLLLKFSLFLCSLRETTCFWRMKQSEEDEGELRTDCGFILFINPYPIEEDFYNTLIHFRIPTRKYEYFLVLLFATDEINRNPFILPNMSIIFSIISGMCFQTLDTIDLRYSPKYSFFRPPNYDCRKSPCNVALTGPSWTTSVRLTTYTTYPQIFFGPFHPILSDNVLFPYVYQVAHKDACLPRAMVSLMLYFAWIWIGLVISDDDQGIQFLSDLREEMQRKGICLAFVNMIPDSIQLYTKRAVIYDNQIMTSSAKVVAIYGEMNSTLEVSFRRWAYLGVQRIWVTTSQWDVITSNKDFSLDPFHGTITYMHHHGKVSKFMNFMRTLNTSKYPVDISQMKMKWNFFNCSVSDTNYSSMNHYLYNTTLEWLSQHKFDMVWSEEGYNLYNAVYAVAHTYHEIILQQLESQNIAKPTGVFRDCHQMASLLKYRVFTNPVGELVDMNLRKKLCANYDIYNIWNFPQGFGLKVKIGSYSSYLPQSQQLHISEDLELSMGSILVPTSTCSVTCTPGFRKFYQEQAPDCCFDCAWCPENEISNETADMEQCVRCPDDQYSSAEHTHCLQRHVSFLAYEDPLGMTLAFMSLCFSALTALVLGAFVKYNGTPIVKANNRTLSYILLVSITFCFLCALFFIGHPNTVTCILQQTTFGVFFTVAVSTVLAKTITVVLAFKLTTPGRRMRRMLLSGVPNFVIPICTLFQSVVCGIWLVTSPPFIDTDTSEHGQIIIVCNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFCCVWVTFLPVYHSTKGKVMVAVEVFSILASCAGLLGCIFVPKCYVILIRPYSNSLQKYKDKLLY", "length": 848, "header": "tr|A0A9J7G299-1|A0A9J7G299_CRIGR Computationally mapped isoform of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764406 PE=3 SV=1 CANONICAL=A0A9J7G2A6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6/entry#A0A9J7G2A6-1", "sequence": { "sequence": "MKKLCVFIICFLLLKFSLFLCSLRETTCFWRMKQSEEDEGELRTDCGFILFINPYPIEEDFYNTLIHFRIPTRKYEYFLVLLFATDEINRNPFILPNMSIIFSIISGMCFQTLDTIDLRYSPKYSFFRPPNYDCRKSPCNVALTGPSWTTSVRLTTYTTYPQIFFGPFHPILSDNVLFPYVYQVAHKDACLPRAMVSLMLYFAWIWIGLVISDDDQGIQFLSDLREEMQRKGICLAFVNMIPDSIQLYTKRAVIYDNQIMTSSAKVVAIYGEMNSTLEVSFRRWAYLGVQRIWVTTSQWDVITSNKDFSLDPFHGTITYMHHHGKVSKFMNFMRTLNTSKYPVDISQMKMKWNFFNCSVSDTNYSSMNHYLYNTTLEWLSQHKFDMVWSEEGYNLYNAVYAVAHTYHEIILQQLESQNIAKPTGVFRDCHQMASLLKYRVFTNPVGELVDMNLRKKLCANYDIYNIWNFPQGFGLKVKIGSYSSYLPQSQQLHISEDLELSMGSNLPQVPTSTCSVTCTPGFRKFYQEQAPDCCFDCAWCPENEISNETDMEQCVRCPDDQYSSAEHTHCLQRHVSFLAYEDPLGMTLAFMSLCFSALTALVLGAFVKYNGTPIVKANNRTLSYILLVSITFCFLCALFFIGHPNTVTCILQQTTFGVFFTVAVSTVLAKTITVVLAFKLTTPGRRMRRMLLSGVPNFVIPICTLFQSVVCGIWLVTSPPFIDTDTSEHGQIIIVCNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFCCVWVTFLPVYHSTKGKVMVAVEVFSILASCAGLLGCIFVPKCYVILIRPYSNSLQKYKDKLLY", "length": 849, "header": "tr|A0A9J7G2A6-1|A0A9J7G2A6_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100764406 PE=3 SV=1 CANONICAL=A0A9J7G2A6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0C9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0C9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764406", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764406", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2A6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770926", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770926", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G0D6", "url": "https://www.orthodb.org/?gene=A0A9J7G0D6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JIV5", "url": "https://www.orthodb.org/?gene=A0A9J7JIV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQK9", "url": "https://www.orthodb.org/?gene=A0A9J7JQK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JRQ9", "url": "https://www.orthodb.org/?gene=A0A9J7JRQ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645708", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRKDTLAHQKQERIIFIIQEKLQRLKTEPKDYEEKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEEAVEENIGEDYKDLSRITRIQVIEKNCGYACGHECDKTQEPITENVINTGMPPGERVCQSPLHIRNILGHLSSHGYLREQTTGIPSVWKKAITKAFTHQEHWKDTHHSESLQVLETSPQKKPCESQEYNEACRSLSLDQPQERAHTGVTLHENDLTGYTFVQNNEGIHKEVKQFVCKLCEEAFIESSDLYNHEKGHISQKRYYCMHCGKTFKNAKCFEKHKVTHTKENPYVCKSCQKTFTCFSHLKKHLRSHTGEKPYTCKNCQKTFTHSSHLHRHERIHTGEKPYVCRHCGKAFNRSSHLNIHENIHNGEKPYVCRHCGKSFNYSSALNVHERIHTGEKPYACRHCGKAFNYSSTLNVHERIHTGEKPYSCRHCGKAFNTSSHMNRHERIHSGEKPYTCKHCGKAFTTASHLNRHERIHKGEKHYACRHCGKAFNCSSLLNRHESVHSGEKHYACRYCGKTFNSSSGLNTHERIHSGEKPYACRHCGKAFNCSSRLNRHERIHSGEKPYACRHCGKAFTTSSHLNRHERIHNGEKPYACKHCGKAFTDSTSHKKHERKHTGEKPYACKYCGKAFRDSSTHKNHERIHSGEKPYVCRHCGKAFSQYNGRKYHERTHTEEKPYSCRHCGKAFSDSSSQEKHERMHTGEKPYACKHCDKAFSLSSSLTNHERTHTR", "length": 752, "header": "tr|A0A9J7G0D6-1|A0A9J7G0D6_CRIGR Isoform 1 of Zinc finger protein 345 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770926 PE=3 SV=1 CANONICAL=A0A9J7G0D6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6/entry#A0A9J7G0D6-1", "sequence": { "sequence": "MALRKDTLAHQKQERIIFIIQEKLQRLKTEPKDYEEKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEEAVEENIGEDYKDLSRITRIQVIEKNCGYACGHECDKTQEPITENVINTGMPPGERVCQSPLHIRNILGHLSSHGYLREQTTGIPSVWKKAITKAFTHQEHWKDTHHSESLQVLETSPQKKPCESQEYNEACRSLSLDQPQERAHTGVTLHENDLTGYTFVQNNEGIHKEVKQFVCKLCEEAFIESSDLYNHEKGHISQKRYYCMHCGKTFKNAKCFEKHKVTHTKENPYVCKSCQKTFTCFSHLKKHLRSHTGEKPYTCKNCQKTFTHSSHLHRHERIHTGEKPYVCRHCGKAFNRSSHLNIHENIHNGEKPYVCRHCGKSFNYSSALNVHERIHTGEKPYACRHCGKAFNYSSTLNVHERIHTGEKPYSCRHCGKAFNTSSHMNRHERIHSGEKPYTCKHCGKAFTTASHLNRHERIHKGEKHYACRHCGKAFNCSSLLNRHESVHSGEKHYACRYCGKTFNSSSGLNTHERIHSGEKPYACRHCGKAFNCSSRLNRHERIHSGEKPYACRHCGKAFTTSSHLNRHERIHNGEKPYACKHCGKAFTDSTSHKKHERKHTGEKPYACKYCGKAFRDSSTHKNHERIHSGEKPYVCRHCGKAFSQYNGRKYHERTHTEEKPYSCRHCGKAFSDSSSQEKHERMHTGEKPYACKHCDKAFSLSSSLTNHERTHTR", "length": 752, "header": "tr|A0A9J7G0D6-1|A0A9J7G0D6_CRIGR Isoform 1 of Zinc finger protein 345 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770926 PE=3 SV=1 CANONICAL=A0A9J7G0D6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6/entry#A0A9J7JIV5-1", "sequence": { "sequence": "MIIFIIQEKLQRLKTEPKDYEEKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEEAVEENIGEDYKDLSRITRIQVIEKNCGYACGHECDKTQEPITENVINTGMPPGERVCQSPLHIRNILGHLSSHGYLREQTTGIPSVWKKAITKAFTHQEHWKDTHHSESLQVLETSPQKKPCESQEYNEACRSLSLDQPQERAHTGVTLHENDLTGYTFVQNNEGIHKEVKQFVCKLCEEAFIESSDLYNHEKGHISQKRYYCMHCGKTFKNAKCFEKHKVTHTKENPYVCKSCQKTFTCFSHLKKHLRSHTGEKPYTCKNCQKTFTHSSHLHRHERIHTGEKPYVCRHCGKAFNRSSHLNIHENIHNGEKPYVCRHCGKSFNYSSALNVHERIHTGEKPYACRHCGKAFNYSSTLNVHERIHTGEKPYSCRHCGKAFNTSSHMNRHERIHSGEKPYTCKHCGKAFTTASHLNRHERIHKGEKHYACRHCGKAFNCSSLLNRHESVHSGEKHYACRYCGKTFNSSSGLNTHERIHSGEKPYACRHCGKAFNCSSRLNRHERIHSGEKPYACRHCGKAFTTSSHLNRHERIHNGEKPYACKHCGKAFTDSTSHKKHERKHTGEKPYACKYCGKAFRDSSTHKNHERIHSGEKPYVCRHCGKAFSQYNGRKYHERTHTEEKPYSCRHCGKAFSDSSSQEKHERMHTGEKPYACKHCDKAFSLSSSLTNHERTHTR", "length": 738, "header": "tr|A0A9J7JIV5-1|A0A9J7JIV5_CRIGR Computationally mapped isoform of Zinc finger protein 345 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770926 PE=3 SV=1 CANONICAL=A0A9J7G0D6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6/entry#A0A9J7JQK9-1", "sequence": { "sequence": "MEKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEEAVEENIGEDYKDLSRITRIQVIEKNCGYACGHECDKTQEPITENVINTGMPPGERVCQSPLHIRNILGHLSSHGYLREQTTGIPSVWKKAITKAFTHQEHWKDTHHSESLQVLETSPQKKPCESQEYNEACRSLSLDQPQERAHTGVTLHENDLTGYTFVQNNEGIHKEVKQFVCKLCEEAFIESSDLYNHEKGHISQKRYYCMHCGKTFKNAKCFEKHKVTHTKENPYVCKSCQKTFTCFSHLKKHLRSHTGEKPYTCKNCQKTFTHSSHLHRHERIHTGEKPYVCRHCGKAFNRSSHLNIHENIHNGEKPYVCRHCGKSFNYSSALNVHERIHTGEKPYACRHCGKAFNYSSTLNVHERIHTGEKPYSCRHCGKAFNTSSHMNRHERIHSGEKPYTCKHCGKAFTTASHLNRHERIHKGEKHYACRHCGKAFNCSSLLNRHESVHSGEKHYACRYCGKTFNSSSGLNTHERIHSGEKPYACRHCGKAFNCSSRLNRHERIHSGEKPYACRHCGKAFTTSSHLNRHERIHNGEKPYACKHCGKAFTDSTSHKKHERKHTGEKPYACKYCGKAFRDSSTHKNHERIHSGEKPYVCRHCGKAFSQYNGRKYHERTHTEEKPYSCRHCGKAFSDSSSQEKHERMHTGEKPYACKHCDKAFSLSSSLTNHERTHTR", "length": 718, "header": "tr|A0A9J7JQK9-1|A0A9J7JQK9_CRIGR Computationally mapped isoform of Zinc finger protein 345 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100770926 PE=3 SV=1 CANONICAL=A0A9J7G0D6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6/entry#A0A9J7JRQ9-1", "sequence": { "sequence": "MALRKDTLAHQKQEREKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEEAVEENIGEDYKDLSRITRIQVIEKNCGYACGHECDKTQEPITENVINTGMPPGERVCQSPLHIRNILGHLSSHGYLREQTTGIPSVWKKAITKAFTHQEHWKDTHHSESLQVLETSPQKKPCESQEYNEACRSLSLDQPQERAHTGVTLHENDLTGYTFVQNNEGIHKEVKQFVCKLCEEAFIESSDLYNHEKGHISQKRYYCMHCGKTFKNAKCFEKHKVTHTKENPYVCKSCQKTFTCFSHLKKHLRSHTGEKPYTCKNCQKTFTHSSHLHRHERIHTGEKPYVCRHCGKAFNRSSHLNIHENIHNGEKPYVCRHCGKSFNYSSALNVHERIHTGEKPYACRHCGKAFNYSSTLNVHERIHTGEKPYSCRHCGKAFNTSSHMNRHERIHSGEKPYTCKHCGKAFTTASHLNRHERIHKGEKHYACRHCGKAFNCSSLLNRHESVHSGEKHYACRYCGKTFNSSSGLNTHERIHSGEKPYACRHCGKAFNCSSRLNRHERIHSGEKPYACRHCGKAFTTSSHLNRHERIHNGEKPYACKHCGKAFTDSTSHKKHERKHTGEKPYACKYCGKAFRDSSTHKNHERIHSGEKPYVCRHCGKAFSQYNGRKYHERTHTEEKPYSCRHCGKAFSDSSSQEKHERMHTGEKPYACKHCDKAFSLSSSLTNHERTHTR", "length": 732, "header": "tr|A0A9J7JRQ9-1|A0A9J7JRQ9_CRIGR Computationally mapped isoform of Zinc finger protein 345 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100770926 PE=3 SV=1 CANONICAL=A0A9J7G0D6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770926", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770926", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0D6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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{ "start_pos": 402, "end_pos": 404 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 46, "end_pos": 48 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 570, "end_pos": 572 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027272774.1. 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Classification" ] }, { "id": "cge:113835856", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835856", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G0F0", "url": "https://www.orthodb.org/?gene=A0A9J7G0F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272774", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272774", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G0F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTHYQTMLLDKDQVHFRPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARPDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAVVTSEDQVIWAQALPPGTSVQKAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSKGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSYEARGNRRADLAAGEAAVTTDTTNLLALEPTNDCPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYWVTKYLVKFLHKMTHLSSKKMRELLEQEEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPVNRVRGYRPGTHWEIDFTEIKPAHLQALQLVQREVWKPLAQAYKDQRDHPAIPHSYQIGDTVWVRRHQTKNLEPRWKGPYIVFLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHSTQNPLKIRLSPTNPHRVYNITWKVANLGTGEIANLSTYIGTLHGGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGERMRTRKKDFYVCPSHKPTDKCGGPQEGYCASWGCETTGDAYWKPSSSWDFITLXRREIPGYIETGSRKCGLKICGPCYDSTKGGNIKGATPRGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVRPKPVIAD", "length": 677, "header": "tr|A0A9J7G0F0-1|A0A9J7G0F0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC113835856 OS=Cricetulus griseus OX=10029 GN=LOC113835856 PE=4 SV=1 CANONICAL=A0A9J7G0F0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0F0-1", "url": 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} ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MEEPSKPSPDMLATAESSSSELDKEVASPDVAATATFSSVEEPGPNPTAVPSAWDRGGPPQLVASPAPDSCQSGSTSTGVGTSEDLRLPRRRPPPGKQIPCSSPGCCLSFPSIRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKMHYKPNRYFKCENCLLRFRTHRSLFKHLHVCAEHAQSPAPPQPPALDKEPPVPERPPESDPASALSLPFPLLEPFTSAPSGPFLPYLNPAPFGLSPPRLRPFLAAAPGPPASSTAIWKKSQGECESQWPAKLHGPTLIPNLTCLFPTGATGSPRRPQGGPDAPSGYAAPSRIVWEHTRGRYSCMQCDFSTASRPAITLHLQDHRPGASAALAPGSLPADTLAESSRVGRKSVLKLS", "length": 393, "header": "tr|A0A9J7G3N9-1|A0A9J7G3N9_CRIGR Computationally mapped isoform of Zinc finger protein 414 isoform X5 OS=Cricetulus griseus OX=10029 GN=Znf414 PE=4 SV=1 CANONICAL=A0A9J7G0L8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0L8/entry#A0A9J7G4V4-1", "sequence": { "sequence": "MLATAESSSSELDKEVASPDVAATATFSSVEEPGPNPTAVPSAWDRGGPPQLVASPAPDSCQSGSTSTGVGTSEDLRLPRRRPPPGKQIPCSSPGCCLSFPSIRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKMHYKPNRYFKCENCLLRFRTHRSLFKHLHVCAEHAQSPAPPQPPALDKEPPVPERPPESDPASALSLPFPLLEPFTSAPSGPFLPYLNPAPFGLSPPRLRPFLAAAPGPPASSTAIWKKSQGECESQWPAKLHGPTLIPNLTCLFPTGATGSPRRPQGGPDAPSGYAAPSRIVWEHTRGRYSCMQCDFSTASRPAITLHLQDHRPGASAALAPGSLPADTLAGKAEECSGMEPEARGEAWAQCPLPQLHTNPTQFAPGV", "length": 406, "header": "tr|A0A9J7G4V4-1|A0A9J7G4V4_CRIGR Computationally mapped isoform of Zinc finger protein 414 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf414 PE=4 SV=1 CANONICAL=A0A9J7G0L8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF14868", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272965", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G0N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKNTESLYSGSLHLVSDLLQTLFREAYSLQKQLMELLDMVCIGPSVDENNIFLMVEVIHSLLDICSVISSMDQAFHANTWKFIIKQSLKHQSVIKNQLKHKEIISSLCEDIVFSFHSCLQLAEQMTQSAPQDNADYRIFQKTLKLCRFFANSLLHYTKEFLPFLSDSCCILHQLYLQIYSKFPPSLHAASISKAQQEEIAGNFLVVLDPLISQLLTTQPFVQAVLDNKLDLPCELQLPQVLLLLVVMDKLPSQPKDIQNLWCTEATARMSLLKAIFYSFEQCSGELSLTAHLQEVKHKGQAEVSVTLYQHVCVHLCAFVASFHPSLFPELDAALLNAVLSTNMTTSLLAMDVWCFLASDSFKCHRYGTAELGLHHVTLVAHLIKSCPGECIQLTNLSILLKRLFFFMAPPHQVEFIQKFSPKAADNFPLWQCISFQALPADLRKQAACDAIRGCTVHCMKWLNSSHTLAELDSLNTALSVLLTVCNSAGDALDIRQRTTVIEVVGQLWAFINIQQVISQPYVQQTFCLLLQLLASFIQTVDPKLISQVVTLLTSLLKLEPPDHVSLAVLDFISSLGRLFIPLSIQEKVLPNLSCILALLLASGNWLLEQLTLEAFTQFAEGTNHEEIVPQCLSSEEIKNKVVAFLEKTGFVDETEAARVDYVKQEKGTSWESTAKVTVEAANGSVLQPCTKRARRELPFEEEYRAAFQAAAEALETTELLLQQAPAPPWLLTELDALQERVEKLKCCIPEGNT", "length": 913, "header": "tr|A0A9J7G0N2-1|A0A9J7G0N2_CRIGR Isoform 1 of Uncharacterized protein C1orf112 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2/entry#A0A9J7G0N2-1", "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKNTESLYSGSLHLVSDLLQTLFREAYSLQKQLMELLDMVCIGPSVDENNIFLMVEVIHSLLDICSVISSMDQAFHANTWKFIIKQSLKHQSVIKNQLKHKEIISSLCEDIVFSFHSCLQLAEQMTQSAPQDNADYRIFQKTLKLCRFFANSLLHYTKEFLPFLSDSCCILHQLYLQIYSKFPPSLHAASISKAQQEEIAGNFLVVLDPLISQLLTTQPFVQAVLDNKLDLPCELQLPQVLLLLVVMDKLPSQPKDIQNLWCTEATARMSLLKAIFYSFEQCSGELSLTAHLQEVKHKGQAEVSVTLYQHVCVHLCAFVASFHPSLFPELDAALLNAVLSTNMTTSLLAMDVWCFLASDSFKCHRYGTAELGLHHVTLVAHLIKSCPGECIQLTNLSILLKRLFFFMAPPHQVEFIQKFSPKAADNFPLWQCISFQALPADLRKQAACDAIRGCTVHCMKWLNSSHTLAELDSLNTALSVLLTVCNSAGDALDIRQRTTVIEVVGQLWAFINIQQVISQPYVQQTFCLLLQLLASFIQTVDPKLISQVVTLLTSLLKLEPPDHVSLAVLDFISSLGRLFIPLSIQEKVLPNLSCILALLLASGNWLLEQLTLEAFTQFAEGTNHEEIVPQCLSSEEIKNKVVAFLEKTGFVDETEAARVDYVKQEKGTSWESTAKVTVEAANGSVLQPCTKRARRELPFEEEYRAAFQAAAEALETTELLLQQAPAPPWLLTELDALQERVEKLKCCIPEGNT", "length": 913, "header": "tr|A0A9J7G0N2-1|A0A9J7G0N2_CRIGR Isoform 1 of Uncharacterized protein C1orf112 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2/entry#A0A9J7GZJ1-1", "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKNTESLYSGSLHLVSDLLQTLFREAYSLQKQLMELLDMVCIGPSVDENNIFLMVEVIHSLLDICSVISSMDQAFHANTWKFIIKQSLKHQSVIKNQLKHKEIISSLCEDIVFSFHSCLQLAEQMTQSAPQDNADYRIFQKTLKLCRFFANSLLHYTKEFLPFLSDSCCILHQLYLQIYSKFPPSLHAASISKAQQEEIAGNFLVVLDPLISQLLTTQPFVQAVLDNKLDLPCELQLPQVLLLLVVMDKLPSQPKDIQNLWCTEATARMSLLKAIFYSFEQCSGELSLTAHLQEVKHKGQAEVSVTLYQHVCVHLCAFVASFHPSLFPELDAALLNAVLSTNMTTSLLAMDVWCFLASDSFKCHRYGTAELGLHHVTLVAHLIKSCPGECIQLTNLSILLKRLFFFMAPPHQVEFIQKFSPKAADNFPLWQCISFQALPADLRKQAACDAIRGCTVHCMKWLNSSHTLAELDSLNTALSVLLTVCNSAGDALDIRQRTTVIEVVGQLWAFINIQQEKVLPNLSCILALLLASGNWLLEQLTLEAFTQFAEGTNHEEIVPQCLSSEEIKNKVVAFLEKTGFVDETEAARVDYVKQEKGTSWESTAKVTVEAANGSVLQPCTKRARRELPFEEEYRAAFQAAAEALETTELLLQQAPAPPWLLTELDALQERVEKLKCCIPEGNT", "length": 843, "header": "tr|A0A9J7GZJ1-1|A0A9J7GZJ1_CRIGR Computationally mapped isoform of Uncharacterized protein C1orf112 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2/entry#A0A9J7JIZ6-1", "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKNTESLYSGSLHLVSDLLQTLFREAYSLQKQLMELLDMVCIGPSVDENNIFLMVEVIHSLLDICSVISSMDQAFHANTWKFIIKQSLKHQSVIKNQLKHKEIISSLCEDIVFSFHSCLQLAEQMTQSAPQDNADYRIFQKTLKLCRFFANSLLHYTKEFLPFLSDSCCILHQLYLQIYSKFPPSLHAASISKAQQEEIAGNFLVVLDPLISQLLTTQPFVQAVLDNKLDLPCELQLPQVLLLLVVMDKLPSQPKDIQNLWCTEATARMSLLKAIFYSFEQCSGELSLTAHLQEVKHKGQAEVSVTLYQHVCVHLCAFVASFHPSLFPELDAALLNAVLSTNMTTSLLAMDVWCFLARYGTAELGLHHVTLVAHLIKSCPGECIQLTNLSILLKRLFFFMAPPHQVEFIQKFSPKAADNFPLWQCISFQALPADLRKQAACDAIRGCTVHCMKWLNSSHTLAELDSLNTALSVLLTVCNSAGDALDIRQRTTVIEVVGQLWAFINIQQVISQPYVQQTFCLLLQLLASFIQTVDPKLISQVVTLLTSLLKLEPPDHVSLAVLDFISSLGRLFIPLSIQEKVLPNLSCILALLLASGNWLLEQLTLEAFTQFAEGTNHEEIVPQCLSSEEIKNKVVAFLEKTGFVDETEAARVDYVKQEKGTSWESTAKVTVEAANGSVLQPCTKRARRELPFEEEYRAAFQAAAEALETTELLLQQAPAPPWLLTELDALQERVEKLKCCIPEGNT", "length": 906, "header": "tr|A0A9J7JIZ6-1|A0A9J7JIZ6_CRIGR Computationally mapped isoform of Uncharacterized protein C1orf112 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2/entry#A0A9J7JQQ3-1", "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKCQTFSRLFSGRPILSRSS", "length": 180, "header": "tr|A0A9J7JQQ3-1|A0A9J7JQQ3_CRIGR Computationally mapped isoform of Uncharacterized protein C1orf112 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2/entry#A0A9J7JRW0-1", "sequence": { "sequence": "MSQDDEVEASRAMLDELNSWSREVCRRELPSVLPRLLSMYQHSESWIEHIRILKIIIDMFLPHMNHLTLEQTLFSQILPKTIKLFDGMMYELNTQAGELSSQNLEIQVTLRNILQTMVQILGGLTGCVQHVCTTQDSIILENIHSLPSSILHIIKETFVHCKNTESLYSGSLHLVSDLLQTLFREAYSLQKQLMELLDMVCIGPSVDENNIFLMVEVIHSLLDICSVISSMDQAFHANTWKFIIKQSLKHQSVIKNQLKHKEIISSLCEDIVFSFHSCLQLAEQMTQSAPQDNADYRIFQKTLKLCRFFANSLLHYTKEFLPFLSDSCCILHQLYLQIYRLMPWKTFFFICGVYLSNVI", "length": 359, "header": "tr|A0A9J7JRW0-1|A0A9J7JRW0_CRIGR Computationally mapped isoform of Uncharacterized protein C1orf112 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=C5H1orf112 PE=4 SV=1 CANONICAL=A0A9J7G0N2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0N2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764089", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764089", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 623, "end_pos": 625, "annotation": "n_glycosylation_sequon" }, { "start_pos": 751, "end_pos": 753, "annotation": "n_glycosylation_sequon" }, { "start_pos": 842, "end_pos": 844, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 502, "end_pos": 504 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 623, "end_pos": 625 }, { "start_pos": 751, "end_pos": 753 }, { "start_pos": 842, "end_pos": 844 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G0P2-1", "uniprot_ac": "A0A9J7G0P2", "uniprot_id": "A0A9J7G0P2_CRIGR", "mass": { "chemical_mass": 35199.0, "monoisotopic_mass": 35199.0 }, "refseq": { "ac": "XP_027273901", "name": "transmembrane epididymal protein 1A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273901" }, "gene_names": [ { "name": "LOC100763875", "type": "recommended", "evidence": [ { "id": "A0A9J7G0P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2" } ] }, { "name": "LOC100763875", "type": "synonym", "evidence": [ { "id": "XP_027273901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273901" } ] } ], "protein_names": [ { "name": "Transmembrane epididymal protein 1A", "type": "synonym", "evidence": [ { "id": "A0A9J7G0P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2/entry#names_and_taxonomy" } ] }, { "name": "transmembrane epididymal protein 1A", "type": "synonym", "evidence": [ { "id": "XP_027273901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273901" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273901" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763875", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G0P2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G0P2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763875", "url": "https://www.ncbi.nlm.nih.gov/gene/100763875", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763875", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763875", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G0P2", "url": "https://www.orthodb.org/?gene=A0A9J7G0P2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46441", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46441", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46441:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46441:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04819", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04819", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273901", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G0P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDFIGHICPGLFLVFYGLYKAIVVSRAMIFHDSLLYPSSLSKSKGRWDRLRQIAHTGWLKTVTGCLLIVYEVNCVEGELRFMNNGMPPRFMYPKEWQHLTMFILLTLDGCVEIVSKNVLRQRCVILERGSTVLGFYVLLMLLLSHIKDSSGVELQVHSLLVLVVFLLMLVLTAELWDPKMFHLWMIETFLFLMMGSWLIQAAFILFRPISGYPWEDDDISDIMFVTTFFCWHVMINALCLLGIYGISSFWHCFYNPSLRLMGSKEALYHESSSGTFYRLLQEAEQQDKDDQALLPSKSPDCDRA", "length": 305, "header": "tr|A0A9J7G0P2-1|A0A9J7G0P2_CRIGR Isoform 1 of Transmembrane epididymal protein 1A OS=Cricetulus griseus OX=10029 GN=LOC100763875 PE=3 SV=1 CANONICAL=A0A9J7G0P2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2/entry#A0A9J7G0P2-1", "sequence": { "sequence": "MGDFIGHICPGLFLVFYGLYKAIVVSRAMIFHDSLLYPSSLSKSKGRWDRLRQIAHTGWLKTVTGCLLIVYEVNCVEGELRFMNNGMPPRFMYPKEWQHLTMFILLTLDGCVEIVSKNVLRQRCVILERGSTVLGFYVLLMLLLSHIKDSSGVELQVHSLLVLVVFLLMLVLTAELWDPKMFHLWMIETFLFLMMGSWLIQAAFILFRPISGYPWEDDDISDIMFVTTFFCWHVMINALCLLGIYGISSFWHCFYNPSLRLMGSKEALYHESSSGTFYRLLQEAEQQDKDDQALLPSKSPDCDRA", "length": 305, "header": "tr|A0A9J7G0P2-1|A0A9J7G0P2_CRIGR Isoform 1 of Transmembrane epididymal protein 1A OS=Cricetulus griseus OX=10029 GN=LOC100763875 PE=3 SV=1 CANONICAL=A0A9J7G0P2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763875", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763875", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0P2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G0Q1-1", "uniprot_ac": "A0A9J7G0Q1", "uniprot_id": "A0A9J7G0Q1_CRIGR", "mass": { "chemical_mass": 120519.0, "monoisotopic_mass": 120519.0 }, "refseq": { "ac": "XP_007641449", "name": "zinc finger and BTB domain-containing protein 21 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641449" }, "gene_names": [ { "name": "Zbtb21", "type": "recommended", "evidence": [ { "id": "A0A9J7G0Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ] }, { "name": "Zbtb21", "type": "synonym", "evidence": [ { "id": "XP_007641449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641449" } ] } ], "protein_names": [ { "name": "Zinc finger and BTB domain-containing protein 21 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G0Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and BTB domain-containing protein 21 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641449" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613905.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641449" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zbtb21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1", "locus": {} } ], "crossref": [ { "id": "cd18209", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18209", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761452", "url": "https://www.ncbi.nlm.nih.gov/gene/100761452", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761452", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761452", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMDIIRI", "url": "https://omabrowser.org/oma/group/PMDIIRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G0Q1", "url": "https://www.orthodb.org/?gene=A0A9J7G0Q1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18450", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18450", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641449", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LY48", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LY48-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K729", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K729", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K729-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K729-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMHSVQRAHKHSREEERRKMCTCQINCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGISFLTNIVAKAPQAPFPACPNRKRVSTEDDETSSQKRSVIVCQGRSEVPGKASGPAVQDLSHAALVSPSGAVKTSTNKPPVAKPPEQLHSLSLAEKNWPKDSATIYAQSLEQPGALDDPNRGSLVKRNAVLPPKPSQDREATDDKPGVSSQLPKGKAIELALKRPRPPVLSLRSSSETPYLLKETSKGGSQGEDRNLLYYSKLGLVVPSSGPASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCAMSQKSSLKDGSEKKALDDRPQVLQPHRLRSFSASQSTDREGTSPMTEVRIKTEPSSPLSDPSDIIRVTVGDAATTTRDLPLKTEEDQRDISRLPAKRRFQADRRSPLKKARANELGPSVSEENCEAGRSPPSLDSNFPDSELNREEFGELEGTRPNKKFKCKHCLKIFRSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHGIVKNPSPASSSHAVLDEKFQRKLIDIVREREIKKALIIKLRRSKPGFQGQSSSPAQQVIKRNLRSRAKGAYICAYCGKAYRFLSQFKQHIKMHPGERPLGVSRAAKPKERALARAVESKEVYPCRLCNAKLSSLLEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMASAENLSLPTLDHNGEVAAASRPQAEPSKVNHVVAPKEDTVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAAPREAGPSKEAGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCHKAFRTNFRLWSHFQSHMSQATDEPAQKEAEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 1083, "header": "tr|A0A9J7G0Q1-1|A0A9J7G0Q1_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zbtb21 PE=4 SV=1 CANONICAL=A0A9J7G0Q1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LY48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1/entry#A0A8C2LY48-1", "sequence": { "sequence": "MMHSVQRAHKHSREEERRKMCTCQINCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGISFLTNIVAKAPQAPFPACPNRKRVSTEDDETSSQKRSVIVCQGRSEVPGKASGPAVQDLSHAALVSPSGAVKTSTNKPPVAKPPEQLHSLSLAEKNWPKDSATIYAQSLEQPGALDDPNRGSLVKRNAVLPPKPSQDREATDDKPGVSSQLPKGKAIELALKRPRPPVLSLRSSSETPYLLKETSKGGSQGEDRNLLYYSKLGLVVPSSGPASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCAMSQKSSLKDGSEKKALDDRPQVLQPHRLRSFSASQSTDREGTSPMTEVRIKTEPSSPLSDPSDIIRVTVGDAATTTRDLPLKTEEDQRDISRLPAKRRFQADRRSPLKKARANELGPSVSEENCEAGRSPPSLDSNFPDSELNREEFEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMASAENLSLPTLDHNGEVAAASRPQAEPSKVNHVVAPKEDTVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAAPREAGPSKEAGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCHKAFRTNFRLWSHFQSHMSQATDEPAQKEAEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 883, "header": "tr|A0A8C2LY48-1|A0A8C2LY48_CRIGR Computationally mapped isoform of Zinc finger and BTB domain-containing protein 21 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zbtb21 PE=4 SV=1 CANONICAL=A0A9J7G0Q1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1/entry#A0A9J7G0Q1-1", "sequence": { "sequence": "MMHSVQRAHKHSREEERRKMCTCQINCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGISFLTNIVAKAPQAPFPACPNRKRVSTEDDETSSQKRSVIVCQGRSEVPGKASGPAVQDLSHAALVSPSGAVKTSTNKPPVAKPPEQLHSLSLAEKNWPKDSATIYAQSLEQPGALDDPNRGSLVKRNAVLPPKPSQDREATDDKPGVSSQLPKGKAIELALKRPRPPVLSLRSSSETPYLLKETSKGGSQGEDRNLLYYSKLGLVVPSSGPASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCAMSQKSSLKDGSEKKALDDRPQVLQPHRLRSFSASQSTDREGTSPMTEVRIKTEPSSPLSDPSDIIRVTVGDAATTTRDLPLKTEEDQRDISRLPAKRRFQADRRSPLKKARANELGPSVSEENCEAGRSPPSLDSNFPDSELNREEFGELEGTRPNKKFKCKHCLKIFRSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHGIVKNPSPASSSHAVLDEKFQRKLIDIVREREIKKALIIKLRRSKPGFQGQSSSPAQQVIKRNLRSRAKGAYICAYCGKAYRFLSQFKQHIKMHPGERPLGVSRAAKPKERALARAVESKEVYPCRLCNAKLSSLLEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMASAENLSLPTLDHNGEVAAASRPQAEPSKVNHVVAPKEDTVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAAPREAGPSKEAGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCHKAFRTNFRLWSHFQSHMSQATDEPAQKEAEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 1083, "header": "tr|A0A9J7G0Q1-1|A0A9J7G0Q1_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zbtb21 PE=4 SV=1 CANONICAL=A0A9J7G0Q1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K729-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1/entry#A0A9J7K729-1", "sequence": { "sequence": "MMHSVQRAHKHSREEERRKMCTCQINCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASKQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMASAENLSLPTLDHNGEVAAASRPQAEPSKVNHVVAPKEDTVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAAPREAGPSKEAGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCHKAFRTNFRLWSHFQSHMSQATDEPAQKEAEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 408, "header": "tr|A0A9J7K729-1|A0A9J7K729_CRIGR Computationally mapped isoform of Zinc finger and BTB domain-containing protein 21 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zbtb21 PE=4 SV=1 CANONICAL=A0A9J7G0Q1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1029, "start_aa": "Thr", "end_pos": 1029, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1029", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 475, "start_aa": "Thr", "end_pos": 475, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr475", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761452", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761452", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZPL5-1", "protein_name": "Zinc finger and BTB domain containing 21", "gene_name": "Zbtb21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMHSVQRAHKHSGEEERRKMCACQINCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENEAQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGISFLTNIVAKAPQAPFPACPNRKRVPVEDDETTSQKRSVIVCQGRSEVPGKASGPAMQDLSHAARASPSGSVKTSTSKPHVAKPPEQLHSLSLTEKSWTKESAAVYAKSLEQPGALDDPNRGSLVKRTTVLPPKPSQDREATDDKPGVSSQLPKGKAIELALKRPRPPVLSLHSSSETPYLLKETSKGGGQGEDRNLLYYSKLGLVVPSGGPASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSLDLKSSQGSSSAANEAPGSVFCAMSQKSSLKDCSEKKVLDDRPQVLQPHRLRSFSASQSTDREEASPVTEVRIKTEPSSPLSDPSDIIRVTVGGDAAAAAATRELPLKTEEDQRDMSRLPAKRRFQTDRRSPLKKPKANEHGPAVSEENCEEGRSPPSLDSNFPDSDLNREEFGELEGTRPNKKFKCKHCLKIFRSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHGIVKNPSPASSSHAVLDEKFQRKLIDIVREREIKKALIIKLRRSKPGFQGQSSSPAQQVIKRNLRSRAKGAYICAYCGKAYRFLSQFKQHIKMHPGERPLGVSRAAKPKARAVESKEVYPCRLCNAKLSSLLEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMALAENFSMPTLDHNGEVAAASRPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEVSAAPREAGPSKEAGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCHKAFRTNFRLWSHFQSHMSQATEEPVQKEPEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPAPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 1082 }, "evidence": [ { "id": "A0A9J7G0Q1", "url": "https://omabrowser.org/oma/group/A0A9J7G0Q1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X9A3-1", "protein_name": "Zinc finger and BTB domain containing 21", "gene_name": "Zbtb21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMHSVQRAHKHSGEEERRKMCACQIKCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENEAQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGISFLTNIVAKAPQAPFPACPNRKRVPVEDDETSSQKRSVIVCQGRSEVPGKASGPAMQDLSHTARASPSASVKTTISKPHVAKPPEQLHSLPLTEKSWTKDSAAVYAKSLEQAGALDDPNRGSLVKRNTVLPPKPSQDREATDDKPGVSSQLPKGKAIELALKRPRPPVLSLHSSSETPYLLKETSKGGGQGEDRNLLYYSKLGLVVPSGGPASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCSMSQKSSLKDCSEKKALDDRPQVLQPHRLRSFSASQSTDREEASPVTEVRIKTEPSSPLSDPSDIIRVTVGGDAAAAAVAAAAAAAATRDLPLKTEEDQRDMSRLPAKRRFQTDRRSPLKKAKANEHGPAVSEENCEEGRSPPSLDSNFPDSDLNREEFEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMALAENFALATLDHNGEVAAASRPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAAPREAGPSKETGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCYKAFRTNFRLWSHFQTHMSQATEEPVQKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 894 }, "evidence": [ { "id": "A0A9J7G0Q1", "url": "https://omabrowser.org/oma/group/A0A9J7G0Q1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ULJ3-1", "protein_name": "Zinc finger and BTB domain-containing protein 21", "gene_name": "ZBTB21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKSSLAAVQELGYSLGISFLTNIVSKTPQAPFPTCPNRKKVFVEDDENSSQKRSVIVCQSRNEAQGKTVSQNQPDVSHTSRPSPSIAVKANTNKPHVPKPIEPLHNLSLTEKSWPKDSSVVYAKSLEHSGSLDDPNRISLVKRNAVLPSKPLQDREAMDDKPGVSGQLPKGKALELALKRPRPPVLSVCSSSETPYLLKETNKGNGQGEDRNLLYYSKLGLVIPSSGSGSGNQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSSVSSDAPGNVLCALSQKSSLKDCSEKTALDDRPQVLQPHRLRSFSASQSTDREGASPVTEVRIKTEPSSPLSDPSDIIRVTVGDAATTAAASSSSVTRDLSLKTEDDQKDMSRLPAKRRFQADRRLPFKKLKVNEHGSPVSEDNFEEGSSPTLLDADFPDSDLNKDEFGELEGTRPNKKFKCKHCLKIFRSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHGIVKNPSPASSSHAVLDEKFQRKLIDIVREREIKKALIIKLRRGKPGFQGQSSSQAQQVIKRNLRSRAKGAYICTYCGKAYRFLSQFKQHIKMHPGEKPLGVNKVAKPKEHAPLASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTENFSLPVLDHNGDVTGSSRPQSQPEPNKVNHIVTTKDDNVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKIQVKEEPVEEAEEEAPEASTAPKEAGPSKEASLWPCEKCGKMFTVHKQLERHQELLCSVKPFICHVCNKAFRTNFRLWSHFQSHMSQASEESAHKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN", "length": 1066 }, "evidence": [ { "id": "A0A9J7G0Q1", "url": "https://omabrowser.org/oma/group/A0A9J7G0Q1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" }, { "name": "methyl-CpG binding", "id": "GO:0008327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008327", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" }, { "name": "POZ domain binding", "id": "GO:0031208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031208", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 827, "end_pos": 829, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G0Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 124, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G0Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 566, "end_pos": 594, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 475, 1029 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 354, "end_pos": 356 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 827, "end_pos": 829 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G0R4-1", "uniprot_ac": "A0A9J7G0R4", "uniprot_id": "A0A9J7G0R4_CRIGR", "mass": { "chemical_mass": 43905.0, "monoisotopic_mass": 43905.0 }, "refseq": { "ac": "XP_027273937", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273937" }, "gene_names": [ { "name": "LOC113835994", "type": "recommended", "evidence": [ { "id": "A0A9J7G0R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0R4" } ] }, { "name": "LOC113835994", "type": "synonym", "evidence": [ { "id": "XP_027273937", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273937" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027273937", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273937" }, { "id": "A0A9J7G0R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0R4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027273937.1. 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proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113835994 PE=4 SV=1 CANONICAL=A0A9J7G0R4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0R4/entry#A0A9J7G0R4-1", "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHDCGGPQEGYCASWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVGPNIVIADQRSPTHFQVPKPPTVPKAITPTPGAVTFSPTPDALNIEITRDPPGTRDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPSSHQELCNQVEPLSQDSRYLVAP", "length": 402, "header": "tr|A0A9J7G0R4-1|A0A9J7G0R4_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113835994 PE=4 SV=1 CANONICAL=A0A9J7G0R4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": 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} ], "protein_names": [ { "name": "Regulator of G-protein signaling 18", "type": "synonym", "evidence": [ { "id": "A0A9J7G0T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8/entry#names_and_taxonomy" } ] }, { "name": "regulator of G-protein signaling 18", "type": "synonym", "evidence": [ { "id": "XP_003499271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499271" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613723.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499271" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0T8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rgs18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8", "locus": {} } ], "crossref": [ { "id": "A0A9J7G0T8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G0T8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759408", "url": "https://www.ncbi.nlm.nih.gov/gene/100759408", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759408", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759408", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TFFKLMH", "url": "https://omabrowser.org/oma/group/TFFKLMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G0T8", "url": "https://www.orthodb.org/?gene=A0A9J7G0T8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845:SF155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845:SF155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499271", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G0T8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMSLVFFAHLNMCESKEKTFFKLMHGSGKEETGIETKIRAKEKRNRLSLLLQRPDFHGETPTSRSALLAKETRVSPEEAVKWAESFDKLLSHRDGLDAFTRFLKTEFSEENIEFWVACEDFKKCKEPQQISLKAKAIYEKFIRNDAPKEVNLDFHTKEVITKSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSEIYVHLLEGRPQRPTNLRRRSRSFTYNEFQDVKSDVAIWL", "length": 235, "header": "tr|A0A9J7G0T8-1|A0A9J7G0T8_CRIGR Isoform 1 of Regulator of G-protein signaling 18 OS=Cricetulus griseus OX=10029 GN=Rgs18 PE=4 SV=1 CANONICAL=A0A9J7G0T8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0T8/entry#A0A9J7G0T8-1", "sequence": { "sequence": "MEMSLVFFAHLNMCESKEKTFFKLMHGSGKEETGIETKIRAKEKRNRLSLLLQRPDFHGETPTSRSALLAKETRVSPEEAVKWAESFDKLLSHRDGLDAFTRFLKTEFSEENIEFWVACEDFKKCKEPQQISLKAKAIYEKFIRNDAPKEVNLDFHTKEVITKSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSEIYVHLLEGRPQRPTNLRRRSRSFTYNEFQDVKSDVAIWL", "length": 235, "header": "tr|A0A9J7G0T8-1|A0A9J7G0T8_CRIGR Isoform 1 of Regulator of G-protein signaling 18 OS=Cricetulus griseus OX=10029 GN=Rgs18 PE=4 SV=1 CANONICAL=A0A9J7G0T8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027273241.1. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G103", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G103" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7G103", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G103" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G103", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G103" }, { "id": "PS50923", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sushi", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 148, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 545, "end_pos": 547 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G136-1", "uniprot_ac": "A0A9J7G136", "uniprot_id": "A0A9J7G136_CRIGR", "mass": { "chemical_mass": 97432.0, "monoisotopic_mass": 97432.0 }, "refseq": { "ac": "XP_027271856", "name": "vomeronasal type-2 receptor 116-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271856" }, "gene_names": [ { "name": "LOC113835674", "type": "recommended", "evidence": [ { "id": "A0A9J7G136", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G136" } ] }, { "name": "LOC113835674", "type": "synonym", "evidence": [ { "id": "XP_027271856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271856" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "A0A9J7G136", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G136/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "XP_027271856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271856" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271856" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G136", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G136" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835674", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G136", "locus": {} } ], "crossref": [ { "id": "A0A9J7G136", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G136", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113835674", "url": "https://www.ncbi.nlm.nih.gov/gene/113835674", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835674", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835674", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G136", "url": "https://www.orthodb.org/?gene=A0A9J7G136", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": 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"MIDEMCSNNWNPTTYMNADIILGAFIPIYVTQDLQDQFLIPFKKKPNLFDAMIGKWKNYQYLLTLYFAIGEINKDAHLLPNVTLGFHLYNAFHSHRRTLEGLLMWLSERSEFIPNYKCKTQHKVLGIIAGIRPEFSAAIGTLLELYKIPQVSFSLLLQVTYGLFHSVLSDKDTFPSLYQISPQEKALTQGVIFLLLHFGWKWVGLIVTDDLNGKEFLSDLTAELASEDICVAFTEKIPTFKKMDFLFWVGVVNLSQHTKVNVYVFYGDIDDVLIFYILNEIKSKRKKLWIMAKPNFVYLQSVFYKWIGLMSFFEGSFSFSKKRNIPGFKHFIQALTPSQYPSDIYFHKFWLDNFHCSPSPLLCGIQELCPLNISLKNKQEKKVVMITSEPSVSIWNAVYAVAHALHEMLLSKTEIASHKDINQDRFLPWQLHPFLRKIQFTNAAGDQICFDKKKNPMEKYDIQNFVGFTNYDSFVVKVGEFVSKSPQDKGLFINEVLIKWPSNFNQNPLSVCTESCGPGFWKLTEEGRPACCFSCVFCPERHISNQTDQQECIPCPIQEYPNPERNNCLPKSMTFLSLEDSLGMALVCIALCFSVSTAVVLGIFLKHQDLPIVKANNRTLSFILLISLLLCFLCTFLFIGQPSTASCILQQITFALVFTLALSTVLTKTITVVLAFRVVKLGRTMRRLFVSGIYNSVIPICFLMQLILLGVWMGTSPPYIQADAHSEHSYIIILCNKGSVTAFYCVLAYLGILALGSFTVAFLARNLPDTFNESKFLTFSMLVFCSVWVTFLPVYHSTKNKAMVAVEVFSILASSAGLLGCIFIPKCYIILLRPDKNSLKCFKNKTKYRHNRLF", "length": 854, "header": "tr|A0A9J7G136-1|A0A9J7G136_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 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104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273678", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273678" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1I6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765719", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1I6", "locus": {} } ], "crossref": [ { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765719", "url": "https://www.ncbi.nlm.nih.gov/gene/100765719", "database": "GeneID", "categories": [ 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1M4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272288", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272288" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103158570", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N3", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1N3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1N3", "database": "AlphaFoldDB", "categories": [] }, { "id": "103158570", "url": "https://www.ncbi.nlm.nih.gov/gene/103158570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103158570", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G1N3", "url": "https://www.orthodb.org/?gene=A0A9J7G1N3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272288", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272288", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G1N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMTPFFSHGLLLLAGLCYLLSRTQATYEEFYSDTSINRFNCRKVALTISNFSISLYKEMAQESKHENILFSPVRVVASILMLSLGANGNVSQHTLEALKLNKTGLSEAEIHKCFQYLLRALNQPNEVSPLRSGSSVFIHRNLNQGNKSVEMIKNLYLSEVVAINFRDCNEAKTQINNHMMKKTNRKIMHMTKELKNDTFLAMMNYIIWNGKIISNFDCQFIKMENFYLGRRQAMKVPMVNNVGVYHLFQVNDLSSTVLMHTNNKGSAIAYFIIPKNKNLYKVEERLTFPHFRRMTQQFSLRMVKVHIPTLSLSESHDVDTIMELLGITPVFNKKANSSVIMEQTPQKSFKVVSKAMLTLDEMGIKSTTGSCIESKQWSDIPLVRLNRPFILFIQDPENKAPLFLGRVVNPRDLQDNSKCACPQEAAHQSRKNVSVGDSSPSLASLLQFLQAFCFERVTQSFLGLPVKYDNNCLL", "length": 474, "header": "tr|A0A9J7G1N3-1|A0A9J7G1N3_CRIGR Isoform 1 of Alpha-1-antitrypsin 1-6 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103158570 PE=3 SV=1 CANONICAL=A0A9J7G1N3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G1N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N3/entry#A0A9J7G1N3-1", "sequence": { "sequence": "MMTPFFSHGLLLLAGLCYLLSRTQATYEEFYSDTSINRFNCRKVALTISNFSISLYKEMAQESKHENILFSPVRVVASILMLSLGANGNVSQHTLEALKLNKTGLSEAEIHKCFQYLLRALNQPNEVSPLRSGSSVFIHRNLNQGNKSVEMIKNLYLSEVVAINFRDCNEAKTQINNHMMKKTNRKIMHMTKELKNDTFLAMMNYIIWNGKIISNFDCQFIKMENFYLGRRQAMKVPMVNNVGVYHLFQVNDLSSTVLMHTNNKGSAIAYFIIPKNKNLYKVEERLTFPHFRRMTQQFSLRMVKVHIPTLSLSESHDVDTIMELLGITPVFNKKANSSVIMEQTPQKSFKVVSKAMLTLDEMGIKSTTGSCIESKQWSDIPLVRLNRPFILFIQDPENKAPLFLGRVVNPRDLQDNSKCACPQEAAHQSRKNVSVGDSSPSLASLLQFLQAFCFERVTQSFLGLPVKYDNNCLL", "length": 474, "header": "tr|A0A9J7G1N3-1|A0A9J7G1N3_CRIGR Isoform 1 of Alpha-1-antitrypsin 1-6 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103158570 PE=3 SV=1 CANONICAL=A0A9J7G1N3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G1N5-1", "uniprot_ac": "A0A9J7G1N5", "uniprot_id": "A0A9J7G1N5_CRIGR", "mass": { "chemical_mass": 45095.0, "monoisotopic_mass": 45095.0 }, "refseq": { "ac": "XP_016830853", "name": "serpin B13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830853" }, "gene_names": [ { "name": "Serpinb13", "type": "recommended", "evidence": [ { "id": "A0A9J7G1N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5" } ] }, { "name": "Serpinb13", "type": "synonym", "evidence": [ { "id": "XP_016830853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830853" } ] } ], "protein_names": [ { "name": "Serpin B13 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G1N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5/entry#names_and_taxonomy" } ] }, { "name": "serpin B13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830853" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613867.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830853", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830853" } ] }, { "annotation": "May play a role in the proliferation or differentiation of keratinocytes.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LJ46", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ46#function" }, { "database": "UniProtKB", "id": "ARBA00055143", "url": "https://www.uniprot.org/uniprotkb/ARBA00055143#function" }, { "database": "UniProtKB", "id": "A0A9J7GZE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZE6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Serpinb13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1N5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1N5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19572", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19572", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773018", "url": "https://www.ncbi.nlm.nih.gov/gene/100773018", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773018", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773018", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RSGLHAQ", "url": "https://omabrowser.org/oma/group/RSGLHAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G1N5", "url": "https://www.orthodb.org/?gene=A0A9J7G1N5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF161", "url": 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7GZE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESLGTATAQFGFDLFKELDKTNDGNIFFSPVGISTAIGMIITGTGGATASELQKVLYSEKGTGSSRTKSEEKEVGKFFVLILKIEKTEVHDQFQKLLTEISKFPNGYELKISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTHEKVKDQFPEGSFSSSTKLVLINTVYFKGLWDRGFKKEHTKEEDFWLNKSTSKPVQMMTQCSSFSFTLLEDLQAKIVGIPYKNNDLSMFVLLPNDIDGLEKIIDRLSPEKLVEWTSPGHLEQREVDLHLPRMQVEESYELEATLEAMGLRSAFREHADYSGMSAHSGLQAQKFLHRSFVVVTEEGVEATAGTGMGFMVSSAAGCELMHCNHPFLFFIRHRESDSILFFGRFSSP", "length": 398, "header": "tr|A0A9J7G1N5-1|A0A9J7G1N5_CRIGR Isoform 1 of Serpin B13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Serpinb13 PE=3 SV=1 CANONICAL=A0A9J7G1N5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LJ46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5/entry#A0A8C2LJ46-1", "sequence": { "sequence": "MESLGTATAQFGFDLFKELDKTNDGNIFFSPVGISTAIGMIITGTGGATASELQKVLYSEKGTGSSRTKSEEKEIEKTEVHDQFQKLLTEISKFPNGYELKISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTHEKVKDQFPEGSFSSSTKLVLINTVYFKGLWDRGFKKEHTKEEDFWLNKSTSKPVQMMTQCSSFSFTLLEDLQAKIVGIPYKNNDLSMFVLLPNDIDGLEKIIDRLSPEKLVEWTSPGHLEQREVDLHLPRMQVEESYELEATLEAMGLRSAFREHADYSGMSAHSGLQAQKFLHRSFVVVTEEGVEATAGTGMGFMVSSAAGCELMHCNHPFLFFIRHRESDSILFFGRFSSP", "length": 388, "header": "tr|A0A8C2LJ46-1|A0A8C2LJ46_CRIGR Computationally mapped isoform of Serpin B13 OS=Cricetulus griseus OX=10029 GN=Serpinb13 PE=3 SV=1 CANONICAL=A0A9J7G1N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5/entry#A0A9J7G1N5-1", "sequence": { "sequence": "MESLGTATAQFGFDLFKELDKTNDGNIFFSPVGISTAIGMIITGTGGATASELQKVLYSEKGTGSSRTKSEEKEVGKFFVLILKIEKTEVHDQFQKLLTEISKFPNGYELKISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTHEKVKDQFPEGSFSSSTKLVLINTVYFKGLWDRGFKKEHTKEEDFWLNKSTSKPVQMMTQCSSFSFTLLEDLQAKIVGIPYKNNDLSMFVLLPNDIDGLEKIIDRLSPEKLVEWTSPGHLEQREVDLHLPRMQVEESYELEATLEAMGLRSAFREHADYSGMSAHSGLQAQKFLHRSFVVVTEEGVEATAGTGMGFMVSSAAGCELMHCNHPFLFFIRHRESDSILFFGRFSSP", "length": 398, "header": "tr|A0A9J7G1N5-1|A0A9J7G1N5_CRIGR Isoform 1 of Serpin B13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Serpinb13 PE=3 SV=1 CANONICAL=A0A9J7G1N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5/entry#A0A9J7GZE6-1", "sequence": { "sequence": "MESLGTATAQFGFDLFKELDKTNDGNIFFSPVGISTAIGMIITGTGGATASELQKVLYSEKGTGSSRTKSEEKEVIEKTEVHDQFQKLLTEISKFPNGYELKISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTHEKVKDQFPEGSFSSSTKLVLINTVYFKGLWDRGFKKEHTKEEDFWLNKSTSKPVQMMTQCSSFSFTLLEDLQAKIVGIPYKNNDLSMFVLLPNDIDGLEKIIDRLSPEKLVEWTSPGHLEQREVDLHLPRMQVEESYELEATLEAMGLRSAFREHADYSGMSAHSGLQAQKFLHRSFVVVTEEGVEATAGTGMGFMVSSAAGCELMHCNHPFLFFIRHRESDSILFFGRFSSP", "length": 389, "header": "tr|A0A9J7GZE6-1|A0A9J7GZE6_CRIGR Computationally mapped isoform of Serpin B13 OS=Cricetulus griseus OX=10029 GN=Serpinb13 PE=3 SV=1 CANONICAL=A0A9J7G1N5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773018", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773018", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TXI6-1", "protein_name": "Serpin family B member 13", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSLVPASTSFGLDLFKDLSKTDEGNVLFSPAGISTTIGMLPPMIRGATATQEQELEKTEEIHHQLQRVLSEISKPNDDYELKIANRLFGEKTYLFLQKYLDYVEKHYHASLEPVDFVNAADESRKKINSWVESQTNEKIKDLLPDGSLSSSIKLVVVNVIYFKGQWDREFKKENTKEEEFWLNKSTSKSVPMMTQRQSFSFKTLEDVPAKILGLPYRSHDLSMFVLLPNDIDGLEKIIDKITPEKLIEWTSAGRMEERAVDLHLPRFRAAGSYDLEAASAGLCAAGLAGSPVGAGLRAQRLLHRSVLEVTEAGTEAAAATAVGFAVTPAQDWERFHCNHPFLFFIRHNESDSVLFFGRFSSP", "length": 363 }, "evidence": [ { "id": "A0A9J7G1N5", "url": "https://omabrowser.org/oma/group/A0A9J7G1N5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZKA0-1", "protein_name": "Serpin B13", "gene_name": "Serpinb13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSLSTATTHFLFDLFKELNKTSDGNVFFSPLGISTAIGMILLGTQGATASELQKVLYSEQGTGSSRLKSEEKEIEKTEEIHHQFQKLLTEISKPTKDYDLIISNRLYGERTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTNEKVKDLFPEGSLNSSTKLVLINTVYFKGLWDREFKKEHTKEEDFWLNKNISKPVQMMAQCSSFSFTLLEDLQAKIVGIPYKNSDFSMFVLLPNDIDGLEKIIDKLSPEKLVEWTSPGQLKQRKVDLRLPRLKVEETYDLQPTLEAVGIHSAFSEHADYSGMSAHSGLQTQNFLHRSFLVVTEEGVEATAGTGVGFKVLSAASCELVHCNHPFLFFVRHRESDSILFFGRFSSP", "length": 389 }, "evidence": [ { "id": "A0A9J7G1N5", "url": "https://omabrowser.org/oma/group/A0A9J7G1N5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CDC0-1", "protein_name": "Serpin B13", "gene_name": "Serpinb13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSLGTAATQFLFDLFKELNKTNDGNVFFSPVGISTAIGMIILGTRGATASELQKVLYTEQGTESSRIKSEEEEIEKREEIHHQLQMLLTEISKFSNDYDLIISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTNVKVKDLFPEGSLNSSTKLVLINTVYFKGLWDREFKKEHTKEEDFWLNKNLSKPVQMMALCSSFNFTFLEDLQAKIVGIPYKNNDISMFVLLPNDIDGLEKIMDKMSPEKLVEWTSPGHLEQRRVDLRLPRLQVEETYDLEPVLEAVGIHSAFSEHADYSGMSARSGLHAQNFLHRSFLVVTEEGVEATAGTGVGLKVSSAASCELVHCNHPFLFFIRHRESDSILFFGKFSSP", "length": 389 }, "evidence": [ { "id": "A0A9J7G1N5", "url": "https://omabrowser.org/oma/group/A0A9J7G1N5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UIV8-1", "protein_name": "Serpin B13", "gene_name": "SERPINB13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272354", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272354" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G1Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Q7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Q7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G1Q7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G1Q7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761917", "url": "https://www.ncbi.nlm.nih.gov/gene/100761917", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761917", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761917", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G1Q7", "url": "https://www.orthodb.org/?gene=A0A9J7G1Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31366:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31366:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14953", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14953", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272354", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272354", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRPDLMASPSPQLLVAAARQTLGVGKRKGPPRAVCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLTLGLHVLEIGESNLIVNPEHACGHLEQVLLGTTALVDVSCSRPHPSVCSLDQLQDLKSALTEIITHFQGLRRHVSPGVSYSKLHPSNWNLCTVFGILLGYPVAYTFHLSHGDGNCLAMIPLRVFAVQISWLPGQPPILLYSFSVPESLFPALRNFLSTWEKELGTRFRTQNDFGDLSISSEIVTLPAVSL", "length": 269, "header": "tr|A0A9J7G1Q7-1|A0A9J7G1Q7_CRIGR Isoform 1 of UPF0739 protein C1orf74 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf74 PE=3 SV=1 CANONICAL=A0A9J7G1Q7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G1Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Q7/entry#A0A9J7G1Q7-1", "sequence": { "sequence": "MSRPDLMASPSPQLLVAAARQTLGVGKRKGPPRAVCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLTLGLHVLEIGESNLIVNPEHACGHLEQVLLGTTALVDVSCSRPHPSVCSLDQLQDLKSALTEIITHFQGLRRHVSPGVSYSKLHPSNWNLCTVFGILLGYPVAYTFHLSHGDGNCLAMIPLRVFAVQISWLPGQPPILLYSFSVPESLFPALRNFLSTWEKELGTRFRTQNDFGDLSISSEIVTLPAVSL", "length": 269, "header": "tr|A0A9J7G1Q7-1|A0A9J7G1Q7_CRIGR Isoform 1 of UPF0739 protein C1orf74 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf74 PE=3 SV=1 CANONICAL=A0A9J7G1Q7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF14970" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin epsilon and delta complex protein 1", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 258, "start_aa": "Gly", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G3V9-1", "uniprot_ac": "A0A9J7G3V9", "uniprot_id": "A0A9J7G3V9_CRIGR", "mass": { "chemical_mass": 167199.0, "monoisotopic_mass": 167199.0 }, "refseq": { "ac": "XP_027274008", "name": "protein TALPID3 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274008" }, "gene_names": [ { "name": "Kiaa0586", "type": "recommended", "evidence": [ { "id": "A0A9J7G3V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9" } ] }, { "name": "Kiaa0586", "type": "synonym", "evidence": [ { "id": "XP_027274008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274008" } ] } ], "protein_names": [ { "name": "Protein TALPID3 isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7G3V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9/entry#names_and_taxonomy" } ] }, { "name": "protein TALPID3 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027274008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274008" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274008" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0586", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9", "locus": {} } ], "crossref": [ { "id": "100753699", "url": "https://www.ncbi.nlm.nih.gov/gene/100753699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753699", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753699", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3V9", "url": "https://www.orthodb.org/?gene=A0A9J7G3V9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15721", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15721", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15721:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15721:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274008", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G1Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6A0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H301", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H301", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H301-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H301-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTCEFSLERGRRVKMPARRLREVVSPNQGGNLDVVEDELPRVPPALSANKRLAVGMRTSSNGTSYGSLDLTSARKHHQLLSENPTVSNKSDFSKDAIVPRLPLNKTEENRTQKANDIFISQYAMGQKDALRTVLKQKVQSVPVFKAVKVHLLEDTSMEKNAVAQETETSPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVAELLNKLQETDKQLQRVAEHQTSIQNKQEKLHCHDHEKQMNVFMEQHIRHLEKLQQQQIDIQTHFIDAALKANSLQPVGTPPCGAGGKHSGKPAHPNLGSSVSSHNTFVSKQVPLREDEDTGFDVQKSPLETPAPRRFAPVPVSKDGKISKRENPIEEKENMEMSSPKGNVKLLEQILNTNDSLTRKSESSDMTSLSRSKTGWSSEKRDSIETLHSQRFPSSEELGTAKVAMQKYNDDVHDLGQKKKQTNDMLQVKQSPIILKFSDLPEKPVKLQTTNTRSVLRDAEKILRGVQNNKKVLEENLEAIIRAKDGAAVYSFINALSTNREISEKIRIRKQVDDWIQIISAEIQDELTKKDYEQKRFGSKNQRSKQTLTMSGDFKANIQDKTVNKSVISRRRCQKQIQEQFRSVPGRNMYALGSQRERKEGLSRSTTVLQDEDYIYGKPVYQGHRSTLKKGPYLRFTSPSPKAKPQRPKVIELVKGTKVKSARTQTDFDATKPMKIDSKIQYPITTVPRGDQQYLFSPNRQVPNVSGALEGHLIPMAILLGQTQSNSDSAPAAGVMVNKPHSVAVTTFIPPSSRKGEAGVKKPNIAVVEMKSEKKDPPQLSVQMLPSLDIDSISYSSVDGVSPPPSPKEASLPPLPTWIQIPEFMKVDKEEAKLPGTNFDEVIDVLQEEDQRDEIPECSAPVLEFNRSVKVIPTEYNGPSFPPVVSNFHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDDSVSISEASEPPASDVVVGTSSGALQLFIDAGVPVNSDMISQFVHEALAETIAVMLGDREAKKQGPVAKSVSGNTSTNETNLPVRVCTPVATPQPTPPCSPPPPQEHVLVNTPDSSPCDSDQDVASSIKEICTEKGSDIPAITLVSTPTVTPVNTPPPAEVLTPTLSEISIDKLKLSSPDLPKPWDSGDLPLDEENPNSLQELLHPRAIVMSVAKDEEPGSVDFPALPAAPEPAPPTPLPEGTKPPSPQQNPSSSSSTQENSLSITVTETETLDRHISEGEILLSCGQNLASKVLGNGDLYLMNINDSLSSTLHDALEMEDDPPSEGQVIRRPHKKLHANMILSLFTKQEQELLISQQAEDLDNSVGELSEGQRLVLTAAEDILAGPSICVPQPTTSAEPSDQQADPGVLLQLSDMASGDICEDSRASHGPMSLRELELQPCPNLVFPITHMTTKGNGANLPGAAEGFSQYQQKHEPDIKQVEHKPVQSHLTCVRNKSDSSLSQQQGGQTAPLFTAHMPPARVSVTLPSANLEDCSQPLSTSSIQGDEDSSGTDTF", "length": 1526, "header": "tr|A0A9J7G3V9-1|A0A9J7G3V9_CRIGR Isoform 1 of Protein TALPID3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa0586 PE=4 SV=1 CANONICAL=A0A9J7G3V9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G1Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9/entry#A0A9J7G1Y1-1", "sequence": { "sequence": "MKTCEFSLERGRRVKMPARRLREVVSPNQGGNLDVVEDELPRVPPALSANKRLAVGMRTSSNGTSYGSLDLTSARKHHQLLSENPTVSNKSDFSKDAIVPRLPLNKTEENRTQKANDIFISQYAMGQKDALRTVLKQKVQSVPVFKAVKVHLLEDTSMEKNAVAQETETSPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVAELLNKLQETDKQLQRVAEHQTSIQNKQEKLHCHDHEKQMNVFMEQHIRHLEKLQQQQIDIQTHFIDAALKANSLQPVGTPPCGAGGKHSGKPAHPNLGSSVSSHNTFVSKQVPLREDEDTGFDVQKSPLETPAPRRFAPVPVSKDGKISKRENPIEEKENMEMSSPKGNVKLLEQILNTNDSLTRKSESSDMTSLSRSKTGWSSEKRDSIETLHSQRFPSSEELGTAKVAMQKYNDDVHDLGQKKKQTNDMLQVKQSPIILKFSDLPEKPVKLQTTNTRSVLRDAEKILRGVQNNKKVLEENLEAIIRAKDGAAVYSFINALSTNREISEKIRIRKQVDDWIQIISAEIQDELTKKDYEQKRFGSKNQRSKQTLTMSGDFKANIQDKTVNKSVISRRRCQKQIQEQFRSVPGRNMYALGSQRERKEGLSRSTTVLQDEDYIYGKPVYQGHRSTLKKGPYLRFTSPSPKAKPQRPKVIELVKGQTQSNSDSAPAAGVMVNKPHSVAVTTFIPPSSRKGEAGVKKPNIAVVEMKSEKKDPPQLSVQMLPSLDIDSISYSSVDGVSPPPSPKEASLPPLPTWIQIPEFMKVDKEEAKLPGTNFDEVIDVLQEEDQRDEIPECSAPVLEFNRSVKVIPTEYNGPSFPPVVSNFHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDDSVSISEASEPPASDVVVGTSSGALQLFIDAGVPVNSDMISQFVHEALAETIAVMLGDREAKKQGPVAKSVSGNTSTNETNLPVRVCTPVATPQPTPPCSPPPPQEHVLVNTPDSSPCDSDQDVASSIKEICTEKGSDIPAITLVSTPTVTPVNTPPPAEVLTPTLSEISIDKLKLSSPDLPKPWDSGDLPLDEENPNSLQELLHPRAIVMSVAKDEEPGSVDFPALPAAPEPAPPTPLPEGTKPPSPQQNPSSSSSTQENSLSITVTETETLDRHISEGEILLSCGQNLASKVLGNGDLYLMNINDSLSSTLHDALEMEDDPPSEGQVIRRPHKKLHANMILSLFTKQEQELLISQQAEDLDNSVGELSEGQRLVLTAAEDILAGPSICVPQPTTSAEPSDQQADPGVLLQLSDMASGDICEDSRASHGPMSLRELELQPCPNLVFPITHMTTKGNGANLPGAAEGFSQYQQKHEPDIKQVEHKPVQSHLTCVRNKSDSSLSQQQGGQTAPLFTAHMPPARVSVTLPSANLEDCSQPLSTSSIQGDEDSSGTDTF", "length": 1461, "header": "tr|A0A9J7G1Y1-1|A0A9J7G3V9_CRIGR Computationally mapped isoform of Protein TALPID3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa0586 PE=4 SV=1 CANONICAL=A0A9J7G3V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9/entry#A0A9J7G3V9-1", "sequence": { "sequence": "MKTCEFSLERGRRVKMPARRLREVVSPNQGGNLDVVEDELPRVPPALSANKRLAVGMRTSSNGTSYGSLDLTSARKHHQLLSENPTVSNKSDFSKDAIVPRLPLNKTEENRTQKANDIFISQYAMGQKDALRTVLKQKVQSVPVFKAVKVHLLEDTSMEKNAVAQETETSPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVAELLNKLQETDKQLQRVAEHQTSIQNKQEKLHCHDHEKQMNVFMEQHIRHLEKLQQQQIDIQTHFIDAALKANSLQPVGTPPCGAGGKHSGKPAHPNLGSSVSSHNTFVSKQVPLREDEDTGFDVQKSPLETPAPRRFAPVPVSKDGKISKRENPIEEKENMEMSSPKGNVKLLEQILNTNDSLTRKSESSDMTSLSRSKTGWSSEKRDSIETLHSQRFPSSEELGTAKVAMQKYNDDVHDLGQKKKQTNDMLQVKQSPIILKFSDLPEKPVKLQTTNTRSVLRDAEKILRGVQNNKKVLEENLEAIIRAKDGAAVYSFINALSTNREISEKIRIRKQVDDWIQIISAEIQDELTKKDYEQKRFGSKNQRSKQTLTMSGDFKANIQDKTVNKSVISRRRCQKQIQEQFRSVPGRNMYALGSQRERKEGLSRSTTVLQDEDYIYGKPVYQGHRSTLKKGPYLRFTSPSPKAKPQRPKVIELVKGTKVKSARTQTDFDATKPMKIDSKIQYPITTVPRGDQQYLFSPNRQVPNVSGALEGHLIPMAILLGQTQSNSDSAPAAGVMVNKPHSVAVTTFIPPSSRKGEAGVKKPNIAVVEMKSEKKDPPQLSVQMLPSLDIDSISYSSVDGVSPPPSPKEASLPPLPTWIQIPEFMKVDKEEAKLPGTNFDEVIDVLQEEDQRDEIPECSAPVLEFNRSVKVIPTEYNGPSFPPVVSNFHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDDSVSISEASEPPASDVVVGTSSGALQLFIDAGVPVNSDMISQFVHEALAETIAVMLGDREAKKQGPVAKSVSGNTSTNETNLPVRVCTPVATPQPTPPCSPPPPQEHVLVNTPDSSPCDSDQDVASSIKEICTEKGSDIPAITLVSTPTVTPVNTPPPAEVLTPTLSEISIDKLKLSSPDLPKPWDSGDLPLDEENPNSLQELLHPRAIVMSVAKDEEPGSVDFPALPAAPEPAPPTPLPEGTKPPSPQQNPSSSSSTQENSLSITVTETETLDRHISEGEILLSCGQNLASKVLGNGDLYLMNINDSLSSTLHDALEMEDDPPSEGQVIRRPHKKLHANMILSLFTKQEQELLISQQAEDLDNSVGELSEGQRLVLTAAEDILAGPSICVPQPTTSAEPSDQQADPGVLLQLSDMASGDICEDSRASHGPMSLRELELQPCPNLVFPITHMTTKGNGANLPGAAEGFSQYQQKHEPDIKQVEHKPVQSHLTCVRNKSDSSLSQQQGGQTAPLFTAHMPPARVSVTLPSANLEDCSQPLSTSSIQGDEDSSGTDTF", "length": 1526, "header": "tr|A0A9J7G3V9-1|A0A9J7G3V9_CRIGR Isoform 1 of Protein TALPID3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa0586 PE=4 SV=1 CANONICAL=A0A9J7G3V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9/entry#A0A9J7G6A0-1", "sequence": { "sequence": "MEKNAVAQETETSPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVAELLNKLQETDKQLQRVAEHQTSIQNKQEKLHCHDHEKQMNVFMEQHIRHLEKLQQQQIDIQTHFIDAALKANSLQPVGTPPCGAGGKHSGKPAHPNLGSSVSSHNTFVSKQVPLREDEDTGFDVQKSPLETPAPRRFAPVPVSKDGKISKRENPIEEKENMEMSSPKGNVKLLEQILNTNDSLTRKSESSDMTSLSRSKTGWSSEKRDSIETLHSQRFPSSEELGTAKVAMQKYNDDVHDLGQKKKQTNDMLQVKQSPIILKFSDLPEKPVKLQTTNTRSVLRDAEKILRGVQNNKKVLEENLEAIIRAKDGAAVYSFINALSTNREISEKIRIRKQVDDWIQIISAEIQDELTKKDYEQKRFGSKNQRSKQTLTMSGDFKANIQDKTVNKSVISRRRCQKQIQEQFRSVPGRNMYALGSQRERKEGLSRSTTVLQDEDYIYGKPVYQGHRSTLKKGPYLRFTSPSPKAKPQRPKVIELVKGTKVKSARTQTDFDATKPMKIDSKIQYPITTVPRGDQQYLFSPNRQVPNVSGALEGHLIPMAILLGQTQSNSDSAPAAGVMVNKPHSVAVTTFIPPSSRKGEAGVKKPNIAVVEMKSEKKDPPQLSVQMLPSLDIDSISYSSVDGVSPPPSPKEASLPPLPTWIQIPEFMKVDKEEAKLPGTNFDEVIDVLQEEDQRDEIPECSAPVLEFNRSVKVIPTEYNGPSFPPVVSNFHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDDSVSISEASEPPASDVVVGTSSGALQLFIDAGVPVNSDMISQFVHEALAETIAVMLGDREAKKQGPVAKSVSGNTSTNETNLPVRVCTPVATPQPTPPCSPPPPQEHVLVNTPDSSPCDSDQDVASSIKEICTEKGSDIPAITLVSTPTVTPVNTPPPAEVLTPTLSEISIDKLKLSSPDLPKPWDSGDLPLDEENPNSLQELLHPRAIVMSVAKDEEPGSVDFPALPAAPEPAPPTPLPEGTKPPSPQQNPSSSSSTQENSLSITVTETETLDRHISEGEILLSCGQNLASKVLGNGDLYLMNINDSLSSTLHDALEMEDDPPSEGQVIRRPHKKLHANMILSLFTKQEQELLISQQAEDLDNSVGELSEGQRLVLTAAEDILAGPSICVPQPTTSAEPSDQQADPGVLLQLSDMASGDICEDSRASHGPMSLRELELQPCPNLVFPITHMTTKGNGANLPGAAEGFSQYQQKHEPDIKQVEHKPVQSHLTCVRNKSDSSLSQQQGGQTAPLFTAHMPPARVSVTLPSANLEDCSQPLSTSSIQGDEDSSGTDTF", "length": 1369, "header": "tr|A0A9J7G6A0-1|A0A9J7G6A0_CRIGR Computationally mapped isoform of Protein TALPID3 isoform X9 OS=Cricetulus griseus OX=10029 GN=Kiaa0586 PE=4 SV=1 CANONICAL=A0A9J7G3V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H301-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3V9/entry#A0A9J7H301-1", "sequence": { "sequence": "MKTCEFSLERGRRVKMPARRLREVVSPNQGGNLDVVEDELPRVPPALSANKRLAVGMRTSSNGTSYGSLDLTSARKHHQLLSENPTVSNKSDFSKDAIVPRLPLNKTEENRTQKANDIFISQYAMGQKDALRTVLKQKVQSVPVFKAVKVHLLEDTSMEKNAVAQETETSPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVAELLNKLQETDKQLQRVAEHQTSIQNKQEKLHCHDHEKQMNVFMEQHIRHLEKLQQQQIDIQTHFIDAALKANSLQPVGTPPCGAGGKHSGKPAHPNLGSSVSSHNTFVSKQVPLREDEDTGFDVQKSPLETPAPRRFAPVPVSKDGKISKRENPIEEKENMEMSSPKGNVKLLEQILNTNDSLTRKSESSDMTSLSRSKTGWSSEKRDSIETLHSQRFPSSEELGTAKVAMQKYNDDVHDLGQKKKQTNDMLQVKQSPIILKFSDLPEKPVKLQTTNTRSVLRDAEKILRGVQNNKKVLEENLEAIIRAKDGAAVYSFINALSTNREISEKIRIRKQVDDWIQIISAEIQDELTKKDYEQKRFGSKNQRSKQTLTMSGDFKANIQDKTVNKSVISRRRCQKQIQEQFRSVPGRNMYALGSQRERKEGLSRSTTVLQDEDYIYGKPVYQGHRSTLKKGPYLRFTSPSPKAKPQRPKVIELVKGTKVKSARTQTDFDATKPMKIDSKIQYPITTVPRGDQQYLFSPNRQVPNVSGALEGHLIPMAILLGQTQSNSDSAPAAGVMVNKPHSVAVTTFIPPSSRKGEAGVKKPNIAVVEMKSEKKDPPQLSVQMLPSLDIDSISYSSVDGVSPPPSPKEASLPPLPTWIQIPEFMKVDKEEAKLPGTNFDEVIDVLQEEDQRDEIPECSAPVLEFNRSVKVIPTEYNGPSFPPVVSNFHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDDSVSISEASEPPASDVVVGTSSGALQLFIDAGVPVNSDMISQFVHEALAETIAVMLGDREAKKQGPVAKSVSGNTSTNETNLPVRVCTPVATPQPTPPCSPPPPQEHVLVNTPDSSPCDSDQDVASSIKEICTEKGSDIPAITLVSTPTVTPVNTPPPAEVLTPTLSEISIDKLKLSSPDLPKPWDSGDLPLDEENPNSLQELLHPRAIVMSVAKDEEPGSVDFPALPAAPEPAPPTPLPEGTKPPSPQQNPSSSSSTQENSLSITVTETETLDRHISEGEILLSCGQNLASKVLGNGDLYLMNINDSLSSTLHDALEMDLDNSVGELSEGQRLVLTAAEDILAGPSICVPQPTTSAEPSDQQADPGVLLQLSDMASGDICEDSRASHGPMSLRELELQPCPNLVFPITHMTTKGNGANLPGAAEGFSQYQQKHEPDIKQVEHKPVQSHLTCVRNKSDSSLSQQQGGQTAPLFTAHMPPARVSVTLPSANLEDCSQPLSTSSIQGDEDSSGTDTF", 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613913.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641598", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641598" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ift43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S0", "locus": {} } ], "crossref": [ { "id": "A0A9J7G6S0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G6S0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757117", "url": "https://www.ncbi.nlm.nih.gov/gene/100757117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029302", 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"MNTPVYYVCVCDNNWAKTTTKPLMGQNTPSPGFLAGGMEAAVAEQGAKMGRRAQQDSTQAESYLSNKNSSLTQTGEAPPPKPPRRQGGWADDSVKMSKLGKKFSEEMEDRRLRQHSLTGSDEGEDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRYT", "length": 234, "header": "tr|A0A9J7G2B5-1|A0A9J7G6S0_CRIGR Computationally mapped isoform of Intraflagellar transport protein 43 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Ift43 PE=3 SV=1 CANONICAL=A0A9J7G6S0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S0/entry#A0A9J7G6S0-1", "sequence": { "sequence": "MMGAGGWFNGWDKCRKNPESGQISAQLPECEPRLDRGCAPRATPARALESSPRKFSRKLLGREGAKMGRRAQQDSTQAESYLSNKNSSLTQTGEAPPPKPPRRQGGWADDSVKMSKLGKKFSEEMEDRRLRQHSLTGSDEGEDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRYT", "length": 252, "header": "tr|A0A9J7G6S0-1|A0A9J7G6S0_CRIGR Isoform 1 of Intraflagellar transport protein 43 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Ift43 PE=3 SV=1 CANONICAL=A0A9J7G6S0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S0/entry#A0A9J7H0K6-1", "sequence": { "sequence": "MMGAGGWFNGWDKCRKNPESGQISAQLPECEPRLDRGCAPRATPARALESSPRKFSRKLLGREGAKMGRRAQQDSTQAESYLSNKNSSLTQTGEAPPPKPPRRQGGWADDSVKMSKLGKKFSEEMEDRRLRQHSLTGSDEGEGPVLPSPSVSHLIRESGSKTPHLSYENPIRNGCDQNQLAVTNSGLAWRELLGGVPYVGCYWWHQSKENFFNKYI", "length": 216, "header": "tr|A0A9J7H0K6-1|A0A9J7H0K6_CRIGR Computationally mapped isoform of Intraflagellar transport protein 43 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Ift43 PE=3 SV=1 CANONICAL=A0A9J7G6S0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 43, "start_aa": "Thr", "end_pos": 43, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2B5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757117", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757117", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BM95-1", "protein_name": "Intraflagellar transport 43", "gene_name": "IFT43", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEDVLDLGEERRRGSAFSGPRMGRRAQQESAQAENHLSGKTASSPLTAETPPPKPPRRQGGWADYSMKAFKLGRKASEEIEDHRLRQQSLDGSDDGGDIPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYAAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDRDRLYAEVSSELLSEWDLLHADKEDPGGPSTHT", "length": 207 }, "evidence": [ { "id": "A0A9J7G6S0", "url": "https://omabrowser.org/oma/group/A0A9J7G6S0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A3Q1N1U9-1", "protein_name": "Intraflagellar transport 43", "gene_name": "IFT43", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDLLDLGEERRRGPATSGAKMGRRAQQESTQAENHLSGKNSSLTLTAEVPPPKPPRRQGRWAEASVKVSKSQRRASEEIQDHRLRQQSLDRSDDGGDIPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDWDHLYTEVSSELLSEWDALQTEKEGPVGQPAHT", "length": 207 }, "evidence": [ { "id": "A0A9J7G6S0", "url": "https://omabrowser.org/oma/group/A0A9J7G6S0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96FT9-1", "protein_name": "Intraflagellar transport protein 43 homolog", "gene_name": "IFT43", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT", "length": 208 }, "evidence": [ { "id": "A0A9J7G6S0", "url": "https://omabrowser.org/oma/group/A0A9J7G6S0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DA69-1", "protein_name": "Intraflagellar transport protein 43 homolog", "gene_name": "Ift43", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDDLLDLGEERRRSSATSGAKMGRRAHQESTQAENYLNSKNSSLTQTGEAPPPKPPRRQGGWADDSMKMAKLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRYI", "length": 206 }, "evidence": [ { "id": "A0A9J7G6S0", "url": "https://omabrowser.org/oma/group/A0A9J7G6S0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274268" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0", "locus": {} } ], "crossref": [ { "id": "A0A9J7G2F0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G2F0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773433", "url": "https://www.ncbi.nlm.nih.gov/gene/100773433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"categories": [ "Protein Classification" ] }, { "id": "A0A9J7G2F0", "url": "https://www.orthodb.org/?gene=A0A9J7G2F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QEK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QEK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQRLAPNIPEGFKAVTASLGRPRSTKAQPDSEAMQASTAQDQMAPIMILEPADGCLCDQPVLISVHGLAPEQPVTLRAALRDEKGALFRAHARYRADAQGGLDLARAPALGGSFAGIEPMGLLWALEPERPFWRLIKRDVQTPFVVELEVLDGHEPDGGRLLARAVHERHFMAPGVRRVPVREGRVRATLFLPPGNGPFPGIVDLFGVGGGLLEYRASLLAGKGFAVMALAYYNYDDLPKGMDIFHLEYFEEAVNYLLSHPQVKGPGIGLLGISKGGELGLAMASFLKGIKAAVIINGSVAAVGNTIHYKDETIPPVSLLRNRVKMTKDGLKDVVEGLQSPLVEEKSFIPVERSDTAFLLLVGQDDHNWKSEFYANEISKRLEAHGKEKPQIICYPEAGHYIEPPYFPLCKAGMHLLVGANITFGGEPKPHAVAQVDAWQQLQTFFHKHLGGEERTIPSKL", "length": 462, "header": "tr|A0A9J7G2F0-1|A0A9J7G2F0_CRIGR Isoform 1 of Acyl-coenzyme A thioesterase 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100773433 PE=3 SV=1 CANONICAL=A0A9J7G2F0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QEK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0/entry#A0A8C2QEK0-1", "sequence": { "sequence": "MAVTLSLEPAGRSCWDEPLGISVHGLGPEQPVTLRAALRDEKGALFRAHARYRADDHGGLDLVRAPALGGSFAGIEPMGLLWALEPERPFWRLIKRDVQTPFVVELEVLDGHEPDGGRLLARAVHERHFMAPGVRRVPVREGRVRATLFLPPGEGPFPGIIDVYGVGGGLLEYRASLVAGHGFATLALAFYGFEDLPTDFNIIEMDYFEEAVSYMRQHPQVKGPDIGLLGLSLGADLCLSMASFLKNVSATVSINGSAFSGNRHIHYKQTMIPPLGHDLRRTKVAFSGILDIVDIRNDIVGGCENPSMIPIEKAKGPILFIAGQDDHCWRSELYTQIASERLQAHGKQRPQVILYPGTGHYIEPPYFPMCPASLHKIVNKAVIWGGEVRAHSKAQVDAWKQILSFFGKHLDNTQSRASSRL", "length": 421, "header": "tr|A0A8C2QEK0-1|A0A8C2QEK0_CRIGR Computationally mapped isoform of Peroxisomal succinyl-coenzyme A thioesterase isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100773433 PE=3 SV=1 CANONICAL=A0A9J7G2F0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0/entry#A0A9J7G2F0-1", "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2F0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027274500" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274500", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274500" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vash2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2", "locus": {} } ], "crossref": [ { "id": "100765067", "url": "https://www.ncbi.nlm.nih.gov/gene/100765067", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765067", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765067", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G4G2", "url": "https://www.orthodb.org/?gene=A0A9J7G4G2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15750", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15750", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15750:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15750:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274500", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274500", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MWS7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MWS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2H0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2K8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2K8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4I6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K842", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K842-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K842-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKSEQGKGLISTTNMPRQSVQVQSLAYTLGLSSASWSPAYTPDFSNAAKASSHTGARRHLHPRKTAVRQLWLPALPEKKVADLSTLNEVGYQIRI", "length": 443, "header": "tr|A0A9J7G4G2-1|A0A9J7G4G2_CRIGR Isoform 1 of Tubulinyl-Tyr carboxypeptidase 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MWS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A8C2MWS7-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSPALPEKKVADLSTLNEVGYQIRI", "length": 355, "header": "tr|A0A8C2MWS7-1|A0A8C2MWS7_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7G2H0-1", "sequence": { "sequence": "METAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKSEQGKGLISTTNMPRQSVQVQSLAYTLGLSSASWSPAYTPDFSNAAKASSHTGARRHLHPRKTAVRQLWLPALPEKKVADLSTLNEVGYQIRI", "length": 301, "header": "tr|A0A9J7G2H0-1|A0A9J7G4G2_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7G2K8-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKSQGKQPHWRPPSPAPKEDSC", "length": 370, "header": "tr|A0A9J7G2K8-1|A0A9J7G2K8_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7G4G2-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKSEQGKGLISTTNMPRQSVQVQSLAYTLGLSSASWSPAYTPDFSNAAKASSHTGARRHLHPRKTAVRQLWLPALPEKKVADLSTLNEVGYQIRI", "length": 443, "header": "tr|A0A9J7G4G2-1|A0A9J7G4G2_CRIGR Isoform 1 of Tubulinyl-Tyr carboxypeptidase 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7G4I6-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKRPALPEKKVADLSTLNEVGYQIRI", "length": 374, "header": "tr|A0A9J7G4I6-1|A0A9J7G4I6_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7GZ88-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSPALPEKKVADLSTLNEVGYQIRI", "length": 311, "header": "tr|A0A9J7GZ88-1|A0A9J7GZ88_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K842-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2/entry#A0A9J7K842-1", "sequence": { "sequence": "MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKGGFPIDSHTWERMWLHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRSDIRKELEKYARDMRMKILQPASAHSPTQVRSRGKSLSPRRRQASPSRRLGRGDKSIEENDTVFGDKVEITRRKSEQGKGLISTTNMPRQSVQVQSLAYTLGLSSASWSPAYTPDFSNAAKASSHTGARRHLHPRKTAVRQLWLPALPEKKVADLSTLNEVGYQIRI", "length": 399, "header": "tr|A0A9J7K842-1|A0A9J7K842_CRIGR Computationally mapped isoform of Tubulinyl-Tyr carboxypeptidase 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Vash2 PE=4 SV=1 CANONICAL=A0A9J7G4G2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2H0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2H0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765067", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765067", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4G2", "url": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273125", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273125" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2R1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2R1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774601", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2R1", "locus": {} } ], "crossref": [ { "id": "A0A9J7G2R1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G2R1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774601", "url": "https://www.ncbi.nlm.nih.gov/gene/100774601", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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] }, { "uniprot_canonical_ac": "A0A9J7G2S0-1", "uniprot_ac": "A0A9J7G2S0", "uniprot_id": "A0A9J7G2S0_CRIGR", "mass": { "chemical_mass": 47171.0, "monoisotopic_mass": 47171.0 }, "refseq": { "ac": "XP_007640227", "name": "plasma serine protease inhibitor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640227" }, "gene_names": [ { "name": "Serpina5", "type": "recommended", "evidence": [ { "id": "A0A9J7G2S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ] }, { "name": "Serpina5", "type": "synonym", "evidence": [ { "id": "XP_007640227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640227" } ] } ], "protein_names": [ { "name": "Plasma serine protease inhibitor", "type": "synonym", "evidence": [ { "id": "A0A9J7G2S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0/entry#names_and_taxonomy" } ] }, { "name": "plasma serine protease inhibitor", "type": "synonym", "evidence": [ { "id": "XP_007640227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640227" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613846.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640227" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Serpina5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0", "locus": {} } ], "crossref": [ { "id": "A0A9J7G2S0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G2S0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759896", "url": "https://www.ncbi.nlm.nih.gov/gene/100759896", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759896", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759896", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVPMMNR", "url": "https://omabrowser.org/oma/group/QVPMMNR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G2S0", "url": "https://www.orthodb.org/?gene=A0A9J7G2S0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLFPILCLLLLSLGVASRQRHRSRSWEKKVKESSGLTHRIEDFAFDLYRALASEAPGQNVVFSPLSVSMSLGMLSLGTSSNTKTQILESLGLSLQQGQEDKFHKGFQQLLQRFSQLRDGLQLSLGSALFADPAVHIRDSFLSAMKTLYMADTLSTNFGNPEMAKKQINDYVAKRTRGKIVDLIKDLDNTNIMVLINYIFFRAKWETAFSAKNTQQKDFHVTPKKTIQVPMMNREDEYYHIVDQSISCTVVRIPYQGNATALFILPSEGRMQQVENGLNSRVLKNWLNSGTKSQLNLYLPKFSIEGTYQLEKILPKLGIRDAFTSHADLSGITNHPNIKLSEMVHTSMVEVDESGTRAAAATGEVFTFRSARPMIVKINFNRPFLLAIVENMDLLFLGKLVYPTGVTLSKTHGLTQRKP", "length": 419, "header": "tr|A0A9J7G2S0-1|A0A9J7G2S0_CRIGR Isoform 1 of Plasma serine protease inhibitor OS=Cricetulus griseus OX=10029 GN=Serpina5 PE=3 SV=1 CANONICAL=A0A9J7G2S0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G2S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0/entry#A0A9J7G2S0-1", "sequence": { "sequence": "MRLFPILCLLLLSLGVASRQRHRSRSWEKKVKESSGLTHRIEDFAFDLYRALASEAPGQNVVFSPLSVSMSLGMLSLGTSSNTKTQILESLGLSLQQGQEDKFHKGFQQLLQRFSQLRDGLQLSLGSALFADPAVHIRDSFLSAMKTLYMADTLSTNFGNPEMAKKQINDYVAKRTRGKIVDLIKDLDNTNIMVLINYIFFRAKWETAFSAKNTQQKDFHVTPKKTIQVPMMNREDEYYHIVDQSISCTVVRIPYQGNATALFILPSEGRMQQVENGLNSRVLKNWLNSGTKSQLNLYLPKFSIEGTYQLEKILPKLGIRDAFTSHADLSGITNHPNIKLSEMVHTSMVEVDESGTRAAAATGEVFTFRSARPMIVKINFNRPFLLAIVENMDLLFLGKLVYPTGVTLSKTHGLTQRKP", "length": 419, "header": "tr|A0A9J7G2S0-1|A0A9J7G2S0_CRIGR Isoform 1 of Plasma serine protease inhibitor OS=Cricetulus griseus OX=10029 GN=Serpina5 PE=3 SV=1 CANONICAL=A0A9J7G2S0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759896", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759896", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1SGC6-1", "protein_name": "Serpin family A member 5", "gene_name": "SERPINA5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRLCLLLCLVLLSPRGASLGRHHSRETKKRVLKLPPAVATVAPGIRDFTFDLYRTLAAASPEQNVFFSPLSISMSLAMLSLGAQSSTKAQILEGLGLNPQEGPEEELHSASQRLLRELGQPREDLQLSLGNALFTKPTLSIQEAFLGTLRTRYLADVFPTDFEDPEGAQKQINNYVVKQTKGKIVDLVKGLDGTEVMVMVNYIFFKAKWETSFNHKITHEQDFHVTSETVVRVPMMKREDQFYYLLDRNLSCKVVGVPYQGNATAFFVLPQEGGMEQVEKGLKEKTLRKWLKMSMKRQLELHLPKFSIEGSYQLENVLPKLGIRDVFTSHADLTGISNTSNIQVSEMVHKAVVEVDESGTKAAAATGTIFMFRSARISSQRIVFNRPFLMFIVENSKNILFVGKVTHP", "length": 408 }, "evidence": [ { "id": "A0A9J7G2S0", "url": "https://omabrowser.org/oma/group/A0A9J7G2S0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0ABK0LNG6-1", "protein_name": "Serpin family A member 5", "gene_name": "Serpina5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYVPPWFPAPARDFSKPGGLLPIKTLSHHNTEMAATMRFFPILCLVLFFSHGVASRQRSHSKEKKKSKESSVGAVGTSRSRDFAFRLYRALASEAPGQNVFFSPMSVSMSLGMLSLGSGLKTKAQILEGLGLSLQQGQEDMLHKGFQQLLQQFSQPSDGLQLSLGSALFTDPAVHIRDHFLSAMKTLYMSDMFSTNFGNPESAKKQINDYVAKKTNGKIVDLIKDLDSTHVMVVVNYIFFKAKWQTAFSSTNTHKMDYHVTPKKTIQVPMMNREDIYSYILDQNISCTVVGIPYQGNTFALFILPSEGKMKRVEDGLDERTLRNWLKMFTKRQLDLYLPKFSIEGTYKLEKILPKLGIQDIFTTHADLSGLTDHTNIKLSEMVHKSMVEVDESGTTAAASTGILFTLRSARPSSLKVEFTRPFLVVIMDGTNLYFIGKVIQP", "length": 442 }, "evidence": [ { "id": "A0A9J7G2S0", "url": "https://omabrowser.org/oma/group/A0A9J7G2S0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQLFLLLCLVLLSPQGASLHRHHPREMKKRVEDLHVGATVAPSSRRDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFNRPFLMFIVDNNILFLGKVNRP", "length": 406 }, "evidence": [ { "id": "A0A9J7G2S0", "url": "https://omabrowser.org/oma/group/A0A9J7G2S0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P70458-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "Serpina5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFFPILCLVLFISHGVASRRHSHSKKKKAKESSVGAVGPPSSKDFAFRLYRALVSESPGQNVFFSPLSVSMSLGMLSLGAGLKTKTQILDGLGLSLQQGQEDKLHKGFQQLLQRFRQPSDGLQLSLGSALFKDPAVHIRDDFLSAMKTLYMSDTFSTNFGNPEIAKKQINNYVAKQTKGKIVDFIKDLDSTHVMIVVNYIFFKAKWQTAFSETNTHKMDFHVTPKRTTQVPMMNREDGYSYYLDQNISCTVVGIPYQGNAIALFILPSEGKMKQVEDGLDERTLRNWLKMFTKRRLDLYLPKFSIEATYKLENVLPKLGIQDVFTTHADLSGITDHTNIKLSEMVHKSMMEVEESGTTAAAITGAIFTFRSARPSSLKIEFTRPFLLTLMEDSHILFVGKVTRP", "length": 405 }, "evidence": [ { "id": "A0A9J7G2S0", "url": "https://omabrowser.org/oma/group/A0A9J7G2S0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9N2I2-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLCLFLCLVLLGPRMATLRRSQKKKIQEVPPAVTTAPPGSRDFVFDLYRALAAAAPAQNIFFSPLSITVSLAMLSLGAQSNTKAQILEGLGIGPGEGSEEELHSASQRLLRELQQPQDSLQLSLGNALFTKPRLPIQEAFLGAMRTLYLADTFPTNFEDPEGAKKKINDYVAKQTKGKIVDLIKSLDGTQVMVMVNYIFFKAKWETSFNLKSTHEQDFYVTPETVVRVPMMKQQDQFYYLLDRNLSCKVVGVPYQGNATAFFILPREGEMEQVENGLKEKTLKKWLRMPMKRRLELYLPKFSIEGSYQLEEVLPKLGIRDIFTSDADLTGISNHSSIRVSEMVHKAVVEVDESGTQAAAATGMVITFKSARLGSQRIVFNRPFLVLIVKNSKHILFLGKVTRP", "length": 404 }, "evidence": [ { "id": "A0A9J7G2S0", "url": "https://omabrowser.org/oma/group/A0A9J7G2S0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G2S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S0" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 403, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 258, "end_pos": 260 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G2S1-1", "uniprot_ac": "A0A9J7G2S1", "uniprot_id": "A0A9J7G2S1_CRIGR", "mass": { "chemical_mass": 62168.0, "monoisotopic_mass": 62168.0 }, "refseq": { "ac": "XP_027275439", "name": "F-box only protein 33 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275439" }, "gene_names": [ { "name": "Fbxo33", "type": "recommended", "evidence": [ { "id": "A0A9J7G2S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S1" } ] }, { "name": "Fbxo33", "type": "synonym", "evidence": [ { "id": "XP_027275439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275439" } ] } ], "protein_names": [ { "name": "F-box only protein 33 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027275439", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275439" }, { "id": "A0A9J7G2S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2S1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027275439.1. 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G2Y2-1", "uniprot_ac": "A0A9J7G2Y2", "uniprot_id": "A0A9J7G2Y2_CRIGR", "mass": { "chemical_mass": 15239.0, "monoisotopic_mass": 15239.0 }, "refseq": { "ac": "XP_027273261", "name": "uncharacterized protein LOC113835904", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273261" }, "gene_names": [ { "name": "LOC113835904", "type": "recommended", "evidence": [ { "id": "A0A9J7G2Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2" } ] }, { "name": "LOC113835904", "type": "synonym", "evidence": [ { "id": "XP_027273261", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273261" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113835904", "type": "synonym", "evidence": [ { "id": "A0A9J7G2Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113835904", "type": "synonym", "evidence": [ { "id": "XP_027273261", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273261" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027273261.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273261", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273261" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G2Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835904", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G2Y2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G2Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835904", "url": "https://www.ncbi.nlm.nih.gov/gene/113835904", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113835904", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835904", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027273261", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273261", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G2Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWLGSKFSEFISPSSVQNRIVLTTAETRQGCKRFCVLWLLAFAGTKISLSTLWQPFFQKSWSTSDKTSLYDKKLQGFIVRTMLAPPTSKLQDLSSKVPQNYNTISFSRAPPVHGSSACLQVSGCGLQENHSPTLFK", "length": 137, "header": "tr|A0A9J7G2Y2-1|A0A9J7G2Y2_CRIGR Isoform 1 of Uncharacterized protein LOC113835904 OS=Cricetulus griseus OX=10029 GN=LOC113835904 PE=4 SV=1 CANONICAL=A0A9J7G2Y2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G2Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2Y2/entry#A0A9J7G2Y2-1", "sequence": { "sequence": "MGWLGSKFSEFISPSSVQNRIVLTTAETRQGCKRFCVLWLLAFAGTKISLSTLWQPFFQKSWSTSDKTSLYDKKLQGFIVRTMLAPPTSKLQDLSSKVPQNYNTISFSRAPPVHGSSACLQVSGCGLQENHSPTLFK", "length": 137, "header": "tr|A0A9J7G2Y2-1|A0A9J7G2Y2_CRIGR Isoform 1 of Uncharacterized protein LOC113835904 OS=Cricetulus griseus OX=10029 GN=LOC113835904 PE=4 SV=1 CANONICAL=A0A9J7G2Y2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7G467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467/entry#names_and_taxonomy" } ] }, { "name": "importin-9 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016828316", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016828316" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613706.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016828316", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016828316" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ipo9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467", "locus": {} } ], "crossref": [ { "id": "A0A9J7G467", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G467", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756041", "url": "https://www.ncbi.nlm.nih.gov/gene/100756041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756041", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MMJ8", "url": "https://www.orthodb.org/?gene=A0A8C2MMJ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G467", "url": "https://www.orthodb.org/?gene=A0A9J7G467", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016828316", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016828316", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G305", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G305", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G305-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G305-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G467-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVETLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCSQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFSLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKSSGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSVLDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYGMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATTTEWSQVDDSNDMWEDQEEEDEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDNERRVLQTIGI", "length": 1042, "header": "tr|A0A9J7G467-1|A0A9J7G467_CRIGR Isoform 1 of Importin-9 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ipo9 PE=3 SV=1 CANONICAL=A0A9J7G467-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467/entry#A0A8C2MMJ8-1", "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVETLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCSQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFSLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKSSGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSVLDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYGMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATTTEWSQDDSNDMWEDQEEEDEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDNERRVLQTIGI", "length": 1041, "header": "tr|A0A8C2MMJ8-1|A0A8C2MMJ8_CRIGR Computationally mapped isoform of Importin-9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ipo9 PE=3 SV=1 CANONICAL=A0A9J7G467-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G305-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467/entry#A0A9J7G305-1", "sequence": { "sequence": "MEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKSSGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSVLDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYGMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATTTEWSQVDDSNDMWEDQEEEDEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDNERRVLQTIGI", "length": 891, "header": "tr|A0A9J7G305-1|A0A9J7G467_CRIGR Computationally mapped isoform of Importin-9 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ipo9 PE=3 SV=1 CANONICAL=A0A9J7G467-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G467-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467/entry#A0A9J7G467-1", "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVETLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCSQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFSLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKSSGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSVLDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYGMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATTTEWSQVDDSNDMWEDQEEEDEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDNERRVLQTIGI", "length": 1042, "header": "tr|A0A9J7G467-1|A0A9J7G467_CRIGR Isoform 1 of Importin-9 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ipo9 PE=3 SV=1 CANONICAL=A0A9J7G467-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G305", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G305" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G305", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G305" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756041", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "pmid": "" }, { "name": "proteasome localization", "id": "GO:0031144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031144", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G467", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G467" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": 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"categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G352", "url": "https://www.orthodb.org/?gene=A0A9J7G352", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14705:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14705:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21541", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21541", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22830", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22830", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274932", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G352", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G352-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESPIIYIMILLLNVFEFSSGVIYNKYEKKNHFACSSEEVHTDKNLFKLFLSTDSLKVYCFFRNQKTDTSREILSVFTSGGHAPKLIIMNSTYHGHFHFNLSLINNRTSWLMDIPRERITVNTDIESVEEWIIKVTMHEGLNIYDTEGTLLDLVREPILQWNLGAIMNKAQVKKLHPHVTDIKVAKCPCANDVALLGLILNETFNGVFIGRTSSGFWEYNEIIWYNLTQNIYSQLKDEHKGLTIIDMVLTNHFLVILTSLGLYVSTDLRYPDSEQIQLSRADFCGFERVDYIKGKLWYNERCFANRENFEVDYVTITFDRNRTLSESSSCFYSKEPFLQWLPCLSSTVKNRRFIPHVVTFLIDQESQTGIYLFHIPNSKRTFVSVSVLKDDKPNETQPKFPNFKFPSSFSNPVGMVFHPRSHFLYVYGNQVWLSEDGGNSFDLLCDFLSNFVRKTVHSFYTSDITFITQSGKIYMTKAGLTTYTLHGNWDDKVFTIYYDHLGFIHKLTPELFDTDSSSSDSQTSNRIFGKPPDLGFNTALAPQYITPNEMIFFAYVPLTEPNYNLYRRKFKSIHLGKVINHSKGGEAYITKLFIHTNGPLGFHTSALTEIVEPFPVESNVATTCIYGSLNISYTGNIFYQISITTQGHLAVFSNTDVEMTVVSPGYSSFLITHIVDEKNALSMATMPHIITSTLYFPVNSWFLYNFGTTTGRTWNISVRPCNYWVQQDDNDVISPSIVKYIDMGNEENYEIKLMPITKGMRILHIPPVGVIVGNPALLEVTTEGYFDITDSYHMKVHIASKFFQKGSTSLALVVWEASSQCYLTTLVPTMKSSCSYLRTMHHIPGRHIPPEHWISGVHKDSQGFNMIKTLPVNYRPPSNMGVYIPLTDNFYHADPSKPKPRSLFHKSKETGKYKQCANARDRAMCNCTEHQKFSHAVAFSDCKEKVHRFKFPVTQYPVVLEIIDEKQKLSVKPPYLVTMTEVNRRQNWQLKHNMPENVKKMKNYLDTRLKTPVYNPFGLNLSIRGSELFHFKVSVIPGVSFCDLHEEFQIYVDEVPLPFPGHVLIAVATSVVLGGLIFVAFLFQLRNIHPLRAFRRYVRGTIAHSSNLSIDS", "length": 1112, "header": "tr|A0A9J7G352-1|A0A9J7G352_CRIGR Isoform 1 of Cation channel sperm-associated protein subunit beta OS=Cricetulus griseus OX=10029 GN=Catsperb PE=4 SV=1 CANONICAL=A0A9J7G352-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G352-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352/entry#A0A9J7G352-1", "sequence": { "sequence": 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"length": 1112, "header": "tr|A0A9J7G352-1|A0A9J7G352_CRIGR Isoform 1 of Cation channel sperm-associated protein subunit beta OS=Cricetulus griseus OX=10029 GN=Catsperb PE=4 SV=1 CANONICAL=A0A9J7G352-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G352", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G352", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751204", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G352", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G352", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1020, "end_pos": 1022, "annotation": "n_glycosylation_sequon" }, { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1107, "end_pos": 1109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 630, "end_pos": 632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" }, { "start_pos": 926, "end_pos": 928, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" }, { "id": "PF22831", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22831" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERB Ig-like", "eco_id": "ECO_0000259", "start_pos": 726, "end_pos": 832, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" }, { "id": "PF22830", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22830" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERB head", "eco_id": "ECO_0000259", "start_pos": 540, "end_pos": 718, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" }, { "id": "PF21548", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21548" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation channel sperm-associated auxiliary subunit beta 2nd", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 513, "start_aa": "Ile", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G352" }, { "id": "PF21541", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21541" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation channel sperm-associated auxiliary subunit 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G359-1", "uniprot_ac": "A0A9J7G359", "uniprot_id": "A0A9J7G359_CRIGR", "mass": { "chemical_mass": 29279.0, "monoisotopic_mass": 29279.0 }, "refseq": { "ac": "XP_027273430", "name": "transmembrane protein 81", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273430" }, "gene_names": [ { "name": "Tmem81", "type": "recommended", "evidence": [ { "id": "A0A9J7G359", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" } ] }, { "name": "Tmem81", "type": "synonym", "evidence": [ { "id": "XP_027273430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273430" } ] } ], "protein_names": [ { "name": "Transmembrane protein 81", "type": "recommended", "evidence": [ { "id": "A0A9J7G359", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 81", "type": "synonym", "evidence": [ { "id": "XP_027273430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273430" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273430" } ] }, { "annotation": "Essential fertilization factor required for male fertility. Part of a conserved trimeric sperm complex with the essential fertilization factors IZUMO1 and SPACA6 which bridges sperm and oocyte membranes during fertilization by binding to IZUMO1R/JUNO on the oocyte.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359#function" }, { "database": "UniProtKB", "id": "ARBA00049937", "url": "https://www.uniprot.org/uniprotkb/ARBA00049937#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359", "locus": {} } ], "crossref": [ { "id": "A0A9J7G359", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G359", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759603", "url": "https://www.ncbi.nlm.nih.gov/gene/100759603", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759603", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759603", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G359", "url": "https://www.orthodb.org/?gene=A0A9J7G359", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35670", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35670", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35670:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35670:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027273430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273430", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G359-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPGTTVFILGSLVLMFHLPLVLMTPETLAIPKKLQQAVGRVIVNATTCTVTCGLGYKEETVCEVGPDGVRRKCKSQRLECLTNWICGMLHFTIVHGEEFELSCLSSDILEVGQEAFRFTWKLARGIISTNDEVFKPFRANSHFLRFKPAYEYDSGTYRCDVQLLKNLKFVKRLYFGLRVLPPNLVNLNFHQSLTEDQKLVDEGWEINLDNHSKPYLPKWQKKVASALGIGIAVGVVSGVLVSIAVRSVLRMIDSNSNLSS", "length": 261, "header": "tr|A0A9J7G359-1|A0A9J7G359_CRIGR Isoform 1 of Transmembrane protein 81 OS=Cricetulus griseus OX=10029 GN=Tmem81 PE=4 SV=1 CANONICAL=A0A9J7G359-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G359-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359/entry#A0A9J7G359-1", "sequence": { "sequence": "MKPGTTVFILGSLVLMFHLPLVLMTPETLAIPKKLQQAVGRVIVNATTCTVTCGLGYKEETVCEVGPDGVRRKCKSQRLECLTNWICGMLHFTIVHGEEFELSCLSSDILEVGQEAFRFTWKLARGIISTNDEVFKPFRANSHFLRFKPAYEYDSGTYRCDVQLLKNLKFVKRLYFGLRVLPPNLVNLNFHQSLTEDQKLVDEGWEINLDNHSKPYLPKWQKKVASALGIGIAVGVVSGVLVSIAVRSVLRMIDSNSNLSS", "length": 261, "header": "tr|A0A9J7G359-1|A0A9J7G359_CRIGR Isoform 1 of Transmembrane protein 81 OS=Cricetulus griseus OX=10029 GN=Tmem81 PE=4 SV=1 CANONICAL=A0A9J7G359-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759603", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759603", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G359", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G359", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G359" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 163, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 258, "end_pos": 260 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G561-1", "uniprot_ac": "A0A9J7G561", "uniprot_id": "A0A9J7G561_CRIGR", "mass": { "chemical_mass": 281142.0, "monoisotopic_mass": 281142.0 }, "refseq": { "ac": "XP_027274981", "name": "protein unc-79 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274981" }, "gene_names": [ { "name": "Unc79", "type": "recommended", "evidence": [ { "id": "A0A9J7G561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561" } ] }, { "name": "Unc79", "type": "synonym", "evidence": [ { "id": "XP_027274981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274981" } ] } ], "protein_names": [ { "name": "Protein unc-79 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561/entry#names_and_taxonomy" } ] }, { "name": "protein unc-79 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027274981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274981" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274981", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274981" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G561", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Unc79", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561", "locus": {} } ], "crossref": [ { "id": "100765551", "url": "https://www.ncbi.nlm.nih.gov/gene/100765551", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765551", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765551", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G381", "url": "https://www.orthodb.org/?gene=A0A9J7G381", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G561", "url": "https://www.orthodb.org/?gene=A0A9J7G561", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21696:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21696:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274981", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274981", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G381", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G381", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G381-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G381-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G561", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G561-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRRESVPAHVNLSASAMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGATAETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSTVQEQALLWLHVLSELDITVPLQLLISMFSDGVNSVKELANQRKSRTNELSGNNAARRVSVTSDPGRRGQHNVLSPFHSPFQSPFRSPMRSPFRSPFKNFGHPGGRTIDFDCEDDDMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHSCQKDKKAKECNLCQSSILCYQLACELLERLAPKDESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPASKHGENPGTRTAPSEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYTARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINSNFNSKDWKTRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKILLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKEEDSVFDESDIHDTPTGPCNKESQTFFARLKRIGGSKMVKYQPVEMNVQRSEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAHISQRQNDHHGRSRQNSATRPDNAEIPKNPVTEGFQETRRPVIPEVRLNCMETFEVRVDSPGKPAPKEDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEDEMMNQGNDGPLGKNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSTSNDDSTITALDDLTDSEELSKSEEPREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPDLSPTEEKAGQTPTSGAKTVLLKLPEDAENPIEGEKPNASAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNIVDKLGDHKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETGSHSSISTQYRQMKRGSLGVLTMSQLMKRQLEHQSSAPHNISNWDTEQVQPGKRQCNVPMCLNPDSDGQPLRTRGATKSSLLSAPSIASMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSAIKDGTFLRTLATSLMDFNELSSIAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWATISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVELCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECIRQYVSEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVVRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNASSPCLPIPLDAGSHIADHLIVILIGFPEQSKTCVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQNQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNTKHLSAGLQLRLQAIQNHVNHHSLRTLPGSGQSSASLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2508, "header": "tr|A0A9J7G561-1|A0A9J7G561_CRIGR Isoform 1 of Protein unc-79 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Unc79 PE=4 SV=1 CANONICAL=A0A9J7G561-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G381-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561/entry#A0A9J7G381-1", "sequence": { "sequence": "MISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRRESVPAHVNLSASAMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGATAETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSTVQEQALLWLHVLSELDITVPLQLLISMFSDGVNSVKELANQRKSRTNELSGNNAARRVSVTSDPGRRGQHNVLSPFHSPFQSPFRSPMRSPFRSPFKNFGHPGGRTIDFDCEDDDMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHSCQKDKKAKECNLCQSSILCYQLACELLERLAPKDESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPASKHGENPGTRTAPSEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYTARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINSNFNSKDWKTRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKILLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAHISQRQNDHHGRSRQNSATRPDNAEIPKNPVTEGFQETRRPVIPEVRLNCMETFEVRVDSPGKPAPKEDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEDEMMNQGNDGPLGKNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSTSNDDSTITALDDLTDSEELSKSEEPREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPDLSPTEEKAGQTPTSGAKTVLLKLPEDAENPIEGEKPNASAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNIVDKLGDHKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETGSHSSISKQVQPGKRQCNVPMCLNPDSDGQPLRTRGATKSSLLSAPSIASMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSAIKDGTFLRTLATSLMDFNELSSIAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWATISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVELCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECIRQYVSEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVVRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNASSPCLPIPLDAGSHIADHLIVILIGFPEQSKTCVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQNQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNTKHLSAGLQLRLQAIQNHVNHHSLRTLPGSGQSSASLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2419, "header": "tr|A0A9J7G381-1|A0A9J7G561_CRIGR Computationally mapped isoform of Protein unc-79 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Unc79 PE=4 SV=1 CANONICAL=A0A9J7G561-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G561-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561/entry#A0A9J7G561-1", "sequence": { "sequence": "MISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRRESVPAHVNLSASAMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGATAETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSTVQEQALLWLHVLSELDITVPLQLLISMFSDGVNSVKELANQRKSRTNELSGNNAARRVSVTSDPGRRGQHNVLSPFHSPFQSPFRSPMRSPFRSPFKNFGHPGGRTIDFDCEDDDMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHSCQKDKKAKECNLCQSSILCYQLACELLERLAPKDESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPASKHGENPGTRTAPSEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYTARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINSNFNSKDWKTRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKILLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKEEDSVFDESDIHDTPTGPCNKESQTFFARLKRIGGSKMVKYQPVEMNVQRSEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAHISQRQNDHHGRSRQNSATRPDNAEIPKNPVTEGFQETRRPVIPEVRLNCMETFEVRVDSPGKPAPKEDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEDEMMNQGNDGPLGKNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSTSNDDSTITALDDLTDSEELSKSEEPREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPDLSPTEEKAGQTPTSGAKTVLLKLPEDAENPIEGEKPNASAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNIVDKLGDHKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETGSHSSISTQYRQMKRGSLGVLTMSQLMKRQLEHQSSAPHNISNWDTEQVQPGKRQCNVPMCLNPDSDGQPLRTRGATKSSLLSAPSIASMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSAIKDGTFLRTLATSLMDFNELSSIAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWATISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVELCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECIRQYVSEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVVRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNASSPCLPIPLDAGSHIADHLIVILIGFPEQSKTCVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQNQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNTKHLSAGLQLRLQAIQNHVNHHSLRTLPGSGQSSASLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2508, "header": "tr|A0A9J7G561-1|A0A9J7G561_CRIGR Isoform 1 of Protein unc-79 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Unc79 PE=4 SV=1 CANONICAL=A0A9J7G561-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561/entry#A0A9J7GYW1-1", "sequence": { "sequence": "MISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRRESVPAHVNLSASAMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGATAETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSTVQEQALLWLHVLSELDITVPLQLLISMFSDGVNSVKELANQRKSRTNELSGNNAARRVSVTSDPGRRGQHNVLSPFHSPFQSPFRSPMRSPFRSPFKNFGHPGGRTIDFDCEDDDMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHSCQKDKKAKECNLCQSSILCYQLACELLERLAPKDESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPASKHGENPGTRTAPSEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYTARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINSNFNSKDWKTRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDVSKILLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDSVLHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAHISQRQNDHHGRSRQNSATRPDNAEIPKNPVTEGFQETRRPVIPEVRLNCMETFEVRVDSPGKPAPKEDLDLIDLSSDSTSGPEKHSILSTSDSDSLVFEPLPPLRIVESDEEDEMMNQGNDGPLGKNAASSPSIPSQPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNHQSTSNDDSTITALDDLTDSEELSKSEEPREFASGSPLTLKQKRDLLQKSSAVPEMSVDYNPDLSPTEEKAGQTPTSGAKTVLLKLPEDAENPIEGEKPNASAESDTEQNPERKVEEDGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNIVDKLGDHKDPDPSAKGLSTLEMPRESSSAPTLEAGAPETGSHSSISTQYRQMKRGSLGVLTMSQLMKRQLEHQSSAPHNISNWDTEQVQPGKRQCNVPMCLNPDSDGQPLRTRGATKSSLLSAPSIASMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSAIKDGTFLRTLATSLMDFNELSSIAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWATISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVELCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECIRQYVSEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVVRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNASSPCLPIPLDAGSHIADHLIVILIGFPEQSKTCVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQNQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNTKHLSAGLQLRLQAIQNHVNHHSLRTLPGSGQSSASLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2458, "header": "tr|A0A9J7GYW1-1|A0A9J7GYW1_CRIGR Computationally mapped isoform of Protein unc-79 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Unc79 PE=4 SV=1 CANONICAL=A0A9J7G561-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2390, "start_aa": "Thr", "end_pos": 2390, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2390", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G381", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G381" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G381", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G381" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765551", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765551", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1025, "end_pos": 1027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1276, "end_pos": 1278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1677, "end_pos": 1679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1811, "end_pos": 1813, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2084, "end_pos": 2086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2304, "end_pos": 2306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2422, "end_pos": 2424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G561" }, { "id": "PF14776", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14776" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein unc-79 homolog N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 468, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": "" } ], 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614316.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833376" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3G0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3G0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774399", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3G0", "locus": {} } ], "crossref": [ { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774399", "url": "https://www.ncbi.nlm.nih.gov/gene/100774399", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774399", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774399", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3G0", "url": "https://www.orthodb.org/?gene=A0A9J7G3G0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833376", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3G0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3G0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLTDDPELEPVLFGLFLFMYLVAVLGNLIIVLAVSNDPNLHTPMYFFLXNLSLADIGFISSTVPKMIVNLQTHRRSISYVSCLTQMSVFAIFGCLDDMLLTVMAYDRFIAICHPLHYQILMNPRLCVLMVLSSFFVSLLDSQLHNLIIMQLPYFKDVEIANFFCDPSKLLNMTCFDSFFNDIAVCLTGAIFGFFPILGILFSYYKIVSSILRISSSGGKFKAFSTCVSHLSVVCLFYGTALGVYLSSAVSSSHRKNLMAEVMYTVVTPTLNPFIYSLRNRDIKGALRRLHLRTH", "length": 295, "header": "tr|A0A9J7G3G0-1|A0A9J7G3G0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 7E24-like OS=Cricetulus griseus OX=10029 GN=LOC100774399 PE=3 SV=1 CANONICAL=A0A9J7G3G0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3G0/entry#A0A9J7G3G0-1", "sequence": { "sequence": "MGLTDDPELEPVLFGLFLFMYLVAVLGNLIIVLAVSNDPNLHTPMYFFLXNLSLADIGFISSTVPKMIVNLQTHRRSISYVSCLTQMSVFAIFGCLDDMLLTVMAYDRFIAICHPLHYQILMNPRLCVLMVLSSFFVSLLDSQLHNLIIMQLPYFKDVEIANFFCDPSKLLNMTCFDSFFNDIAVCLTGAIFGFFPILGILFSYYKIVSSILRISSSGGKFKAFSTCVSHLSVVCLFYGTALGVYLSSAVSSSHRKNLMAEVMYTVVTPTLNPFIYSLRNRDIKGALRRLHLRTH", "length": 295, "header": "tr|A0A9J7G3G0-1|A0A9J7G3G0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 7E24-like OS=Cricetulus griseus OX=10029 GN=LOC100774399 PE=3 SV=1 CANONICAL=A0A9J7G3G0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275437", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275437" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3J1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836207", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3J1", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3J1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3J1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G7Z8-1", "uniprot_ac": "A0A9J7G7Z8", "uniprot_id": "A0A9J7G7Z8_CRIGR", "mass": { "chemical_mass": 139780.0, "monoisotopic_mass": 139780.0 }, "refseq": { "ac": "XP_027276093", "name": "cordon-bleu protein-like 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276093" }, "gene_names": [ { "name": "Cobll1", "type": "recommended", "evidence": [ { "id": "A0A9J7G7Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" } ] }, { "name": "Cobll1", "type": "synonym", "evidence": [ { "id": "XP_027276093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276093" } ] } ], "protein_names": [ { "name": "Cordon-bleu protein-like 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G7Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#names_and_taxonomy" } ] }, { "name": "cordon-bleu protein-like 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027276093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276093" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276093" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cobll1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8", "locus": {} } ], "crossref": [ { "id": "100753532", "url": "https://www.ncbi.nlm.nih.gov/gene/100753532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753532", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753532", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G7Z8", "url": "https://www.orthodb.org/?gene=A0A9J7G7Z8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21557", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21557", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21557:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21557:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3M7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3M7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4E5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4G9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4P4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4P4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6L7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6M3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6M3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G926", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G926", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G926-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G926-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JST5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JST5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JST5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JST5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1305, "header": "tr|A0A9J7G7Z8-1|A0A9J7G7Z8_CRIGR Isoform 1 of Cordon-bleu protein-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G3M7-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPAGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1237, "header": "tr|A0A9J7G3M7-1|A0A9J7G7Z8_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G4E5-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPAGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1246, "header": "tr|A0A9J7G4E5-1|A0A9J7G4E5_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X14 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G4G9-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPAGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1238, "header": "tr|A0A9J7G4G9-1|A0A9J7G4G9_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X15 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G4N8-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1297, "header": "tr|A0A9J7G4N8-1|A0A9J7G4N8_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G4P4-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1291, "header": "tr|A0A9J7G4P4-1|A0A9J7G4P4_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G4Q0-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1285, "header": "tr|A0A9J7G4Q0-1|A0A9J7G4Q0_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G6L7-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKREVKHEFQANYHQSEILKFDKF", "length": 1298, "header": "tr|A0A9J7G6L7-1|A0A9J7G6L7_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6M3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G6M3-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1299, "header": "tr|A0A9J7G6M3-1|A0A9J7G6M3_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G7Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G7Z8-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1305, "header": "tr|A0A9J7G7Z8-1|A0A9J7G7Z8_CRIGR Isoform 1 of Cordon-bleu protein-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G926-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7G926-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1292, "header": "tr|A0A9J7G926-1|A0A9J7G926_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7JKS2-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1277, "header": "tr|A0A9J7JKS2-1|A0A9J7JKS2_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7JR13-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1286, "header": "tr|A0A9J7JR13-1|A0A9J7JR13_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JST5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7JST5-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTALPPEDGLAPDSAVEANSPEGLSSPAGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1251, "header": "tr|A0A9J7JST5-1|A0A9J7JST5_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JU44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7JU44-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPAGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1259, "header": "tr|A0A9J7JU44-1|A0A9J7JU44_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X12 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8/entry#A0A9J7JUE7-1", "sequence": { "sequence": "MGQAVTRRLQARARAATSSAMDRSAPDPGPRSAPRTSAPQPVGSLGRKPKAKAPLPPAETKGMGVPSAEELVESAAVIMEQNENMIDKDIDLSVVLPGDILKSATVPGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHVPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISKAPPVTAFRKSSFQESCQMSQTPDIVKEKENRGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGDAQGQERRASCVVRSTSVDDNDKSSTDGVMVRTGSLQLSSSSVGTLSLKRTKRKAPAPPSKTPVQQNDTSLASDTESVLLHLSALPPEDGLAPDSAVEANSPEGLSSPDSTSLAEGSLGPGFLNQEQCTVPKPADELSLSEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELGESCKDQAQSISVKSPDIPSVSTDVVNTLENDPDSALSLSDGEASPSSKGKIQEGTNTEGQGPHNPVVCDISNEDTVSDSLRDLKSLGPSQENVQNEIMVCATNTDYVKDSLRKTETSTESQASEKAVDVEADRLSSFPACRTDHVKSSRENHLTAPSGPDQKLNQPSVEKTKTQDAAIQATPASSSFDGNHKDHNSSDLKVDESVQTSNSSRSTQHSSSSLSDPENASKAFRSQGIPTPVQDRLPMKEPATCAYGNHNSLSPVDRNDKNPAASYLKNFPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEIVKDWESETVGNKDDQKMHAEGQKHILGNMEQTAMQTETLVTSKGSQEPQPDLKPKPGLGTEQHLHRTLSVGSEMKPPKPPRMTMDTGGIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKSPTTKEVQRDPRTPPEQILSPLSEWTHSAQLPSLSKTDGDTTIQKPAEISLPPVAPKPVALPAVTSPPPVAPKPMALPAETSPPPVAPKPMALPAETSPPPVAPKPMALSAETSPPPVAPKPVALPAETSPPPVASKPVALPGSQGASSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKTRPESSEGFSAQPADTEGEKTYAVNKSAVVAQPDDDDDDDKHNKPVQNEQSSHMLTPADGPSFTLKRQSSLTFQSSDPEQVHQSLLTAIRSGEAASKLKRVIVPSNTISVNGKSGISHTMSSDAQDSR", "length": 1304, "header": "tr|A0A9J7JUE7-1|A0A9J7JUE7_CRIGR Computationally mapped isoform of Cordon-bleu protein-like 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cobll1 PE=4 SV=1 CANONICAL=A0A9J7G7Z8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 6, "start_aa": "Thr", "end_pos": 6, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr6", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 705, "start_aa": "Thr", "end_pos": 705, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr705", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 990, "start_aa": "Thr", "end_pos": 990, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr990", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3M7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3M7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3M7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3M7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753532", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753532", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1202, "end_pos": 1204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" }, { "start_pos": 750, "end_pos": 752, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G7Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z8" }, { "id": "PF09469", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09469" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cordon-bleu ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 267, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 6, 705, 990 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1202, "end_pos": 1204 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 719, "end_pos": 721 }, { "start_pos": 733, "end_pos": 735 }, { "start_pos": 750, "end_pos": 752 } ] }, "class_list": [], "section_stats": [ 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This record is derived from a genomic sequence (NW_003614083.1) annotated using gene prediction method: Gnomon. 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Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 22% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273881", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273881" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3P9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Il24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3P9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3P9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3P9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773869", "url": "https://www.ncbi.nlm.nih.gov/gene/100773869", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773869", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773869", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3P9", "url": "https://www.orthodb.org/?gene=A0A9J7G3P9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48482:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48482:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027273881", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273881", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3P9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSVGISSSDRTSHFQIEAPSITSGPEVFMFIPMLVPPLSAMLGLEDNFFRGPCPSSTQMSSARQSLSCLSLILLVWNQVPGLQGHEFRFGPCRVEGVVLPELWEAFWAVKNTVQAQDDITSVRLLKAQVLQNVSDAESCYLVHSLLKFYLNTVFKNYHSKIAKVKILKSFSSLANNFIDIVSKLQPSKDKDMLSISESAHRRFMLFRRAFKQMDTEVALVKAFGEVDILLTWMQKFYQL", "length": 240, "header": "tr|A0A9J7G3P9-1|A0A9J7G3P9_CRIGR Isoform 1 of Interleukin-24 OS=Cricetulus griseus OX=10029 GN=Il24 PE=3 SV=1 CANONICAL=A0A9J7G3P9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3P9/entry#A0A9J7G3P9-1", "sequence": { "sequence": "MGSVGISSSDRTSHFQIEAPSITSGPEVFMFIPMLVPPLSAMLGLEDNFFRGPCPSSTQMSSARQSLSCLSLILLVWNQVPGLQGHEFRFGPCRVEGVVLPELWEAFWAVKNTVQAQDDITSVRLLKAQVLQNVSDAESCYLVHSLLKFYLNTVFKNYHSKIAKVKILKSFSSLANNFIDIVSKLQPSKDKDMLSISESAHRRFMLFRRAFKQMDTEVALVKAFGEVDILLTWMQKFYQL", "length": 240, "header": "tr|A0A9J7G3P9-1|A0A9J7G3P9_CRIGR Isoform 1 of Interleukin-24 OS=Cricetulus griseus OX=10029 GN=Il24 PE=3 SV=1 CANONICAL=A0A9J7G3P9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027275438.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275438", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275438" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3Q9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3Q9", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836208", "url": "https://www.ncbi.nlm.nih.gov/gene/113836208", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000840", "url": 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"MGQTVTTPLSLTLSHWRDVQEYAHNQSVNVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIVTWEALVQDPPPWVRPFLHPKGPSLLPPSNRSNRPIPSAPTPPTPLIPPNPPSHSNLYPTVVKDTKAKEKKTPKVLPPGEDQLVDLLTEEPPPYPPLPPPPEAEADSAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGVNGQPTQLPNEIDAACPLERPEWDFTTEAGRTHLRLYRQLLVAGLRGAGRRPTNLAQVKQIIQGAEESPAAFLERLKEAYRMYTPYNPEDPGQATNVSMSFIWQSAPDIRNKLQRLENLQGYTLQDLLKEAERIFNKRETQTEREERWRKETQEREERLRQEAEEKEVARDRKRNKEMSRLLATVVTGQRQNRQRDDRRGPHLDRDQCAYCKEKGHWARECPKNPRAKLPPPRVSDLLNLED", "length": 544, "header": "tr|A0A9J7G3Q9-1|A0A9J7G3Q9_CRIGR Isoform 1 of Bromodomain-containing protein 4-like OS=Cricetulus griseus OX=10029 GN=LOC113836208 PE=4 SV=1 CANONICAL=A0A9J7G3Q9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9/entry#A0A9J7G3Q9-1", "sequence": { "sequence": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836208", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836208", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G3Q9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Q9" }, { "id": "PS50158", "database": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275360" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751862", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3R3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3R3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751862", "url": "https://www.ncbi.nlm.nih.gov/gene/100751862", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751862", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751862", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3R3", "url": "https://www.orthodb.org/?gene=A0A9J7G3R3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPKNQTVLEFHLKGLSEDPDLQPTLFGLFLSMYLVTVLGNLLIILAIISDSHLHTPMYFFLCNLSLVDIFFSSTTVPKMLVNIQTQSTAIPFAGCLAQMYAFHLFGTMDSFLLAVMAIDRLVAIGYPLRYSVLMSPYICGLLVGGPWAITNLQSLVHTCLMAQLTFCAGSEIPHFFCDLMPLLKLSCSDTHTNELVIFAFGIIMGLSPLFCILVSYICIFRAVFRIPSAQGKWKAFSTCGSHLTVVSLFFGTIFVVYLQPASPTSSQKDKMAALMYGVVIPTLNPFIYSLRNKDMKAALRKLGSKAVSSQP", "length": 312, "header": "tr|A0A9J7G3R3-1|A0A9J7G3R3_CRIGR Isoform 1 of Olfactory receptor 1I1 OS=Cricetulus griseus OX=10029 GN=LOC100751862 PE=3 SV=1 CANONICAL=A0A9J7G3R3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3/entry#A0A9J7G3R3-1", "sequence": { "sequence": "MEPKNQTVLEFHLKGLSEDPDLQPTLFGLFLSMYLVTVLGNLLIILAIISDSHLHTPMYFFLCNLSLVDIFFSSTTVPKMLVNIQTQSTAIPFAGCLAQMYAFHLFGTMDSFLLAVMAIDRLVAIGYPLRYSVLMSPYICGLLVGGPWAITNLQSLVHTCLMAQLTFCAGSEIPHFFCDLMPLLKLSCSDTHTNELVIFAFGIIMGLSPLFCILVSYICIFRAVFRIPSAQGKWKAFSTCGSHLTVVSLFFGTIFVVYLQPASPTSSQKDKMAALMYGVVIPTLNPFIYSLRNKDMKAALRKLGSKAVSSQP", "length": 312, "header": "tr|A0A9J7G3R3-1|A0A9J7G3R3_CRIGR Isoform 1 of Olfactory receptor 1I1 OS=Cricetulus griseus OX=10029 GN=LOC100751862 PE=3 SV=1 CANONICAL=A0A9J7G3R3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751862", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751862", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G3R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"https://www.ncbi.nlm.nih.gov/protein/XP_027273938" }, "gene_names": [ { "name": "LOC113835995", "type": "recommended", "evidence": [ { "id": "A0A9J7G4Z5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5" } ] }, { "name": "LOC113835995", "type": "synonym", "evidence": [ { "id": "XP_027273938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273938" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113835995 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G4Z5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113835995 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027273938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273938" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273938" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835995", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4Z5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4Z5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113835995", "url": "https://www.ncbi.nlm.nih.gov/gene/113835995", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835995", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835995", "database": 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}, { "id": "XP_027273938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3R7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3S9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSY7", "url": 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"MTHYQTMLLDKDRVHFGPLVTLNPASLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERKAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQTPFQDGLKPSLLNMKQPRSLLRNCLKKSFPVMGCLSSFTGPPTSTTGGLETPCSSL", "length": 358, "header": "tr|A0A9J7G3S9-1|A0A9J7G3S9_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113835995 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC113835995 PE=4 SV=1 CANONICAL=A0A9J7G4Z5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z5/entry#A0A9J7G4Z5-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275512" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfl2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T5", "locus": {} } ], "crossref": [ { "id": "A0A9J7G3T5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G3T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11286", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11286", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757641", "url": "https://www.ncbi.nlm.nih.gov/gene/100757641", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757641", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757641", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3T5", "url": "https://www.orthodb.org/?gene=A0A9J7G3T5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11913", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11913", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275512", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGSVVVSLEGKPL", "length": 166, "header": "tr|A0A9J7G3T5-1|A0A9J7G3T5_CRIGR Isoform 1 of Cofilin-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfl2 PE=3 SV=1 CANONICAL=A0A9J7G3T5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T5/entry#A0A9J7G3T5-1", "sequence": { "sequence": "MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGSVVVSLEGKPL", "length": 166, "header": "tr|A0A9J7G3T5-1|A0A9J7G3T5_CRIGR Isoform 1 of Cofilin-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfl2 PE=3 SV=1 CANONICAL=A0A9J7G3T5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616245.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016818840", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016818840" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cacnb4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4M5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4M5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765888", "url": "https://www.ncbi.nlm.nih.gov/gene/100765888", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000584", 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"categories": [ "Protein Classification" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016818840", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016818840", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G869", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G869", "database": "UniProtKB", "categories": [ 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"MSTGLFQTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDTYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 321, "header": "tr|A0A9J7G869-1|A0A9J7G869_CRIGR Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Cacnb4 PE=3 SV=1 CANONICAL=A0A9J7G4M5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5/entry#A0A9J7JUI6-1", "sequence": { "sequence": "MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDTYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 302, "header": "tr|A0A9J7JUI6-1|A0A9J7JUI6_CRIGR Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cacnb4 PE=3 SV=1 CANONICAL=A0A9J7G4M5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5/entry#A0A9J7K6U6-1", "sequence": { "sequence": "MAGNRVETLPPVWVKWCQEHFERPPQQQTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDTYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 342, "header": "tr|A0A9J7K6U6-1|A0A9J7K6U6_CRIGR Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cacnb4 PE=3 SV=1 CANONICAL=A0A9J7G4M5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3T6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765888", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765888", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "voltage-gated calcium channel complex", "id": "GO:0005891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005891", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G4M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4M5" }, { "id": "SM00072", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00072" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase/L-type calcium channel beta subunit", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 298, "start_aa": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276352" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3X4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163672", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3X4", "locus": {} } ], "crossref": [ { "id": "cd00098", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00098", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103163672", "url": "https://www.ncbi.nlm.nih.gov/gene/103163672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163672", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G3X4", "url": "https://www.orthodb.org/?gene=A0A9J7G3X4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45889", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45889", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45889:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45889:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276352", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G3X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3X4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSQSCQRGPESAHMPHKGPCHTILCSPGSSLCGSSLGPPKKPGGHSNPAKSSTVVSSWVAGCQAGLLGLLLLLLWCMSMAGGLEVKTAEETQIVFLHANVTVPCEIPGSPHLDIKTVGIIWSFKNVWNESEVPIYELYGNHLKVLRPGANVSLLGLERGDASLHLPRIKLSEAGEYRCKLVVTPEHAEGMTRVDVVADPAIEFFVIPATERIGERLICKLDGFYPEAFDIKWERHSLKDSHFQVITEGVITGPTVRNDDGTFSVTSSLALKPAPGDHGIIYYCVVSHRSLLVPKKLNVILPKKGSVEIYVTIVSPCVLLVLVLILAAVYCLWTW", "length": 335, "header": "tr|A0A9J7G3X4-1|A0A9J7G3X4_CRIGR Isoform 1 of Natural cytotoxicity triggering receptor 3 ligand 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163672 PE=4 SV=1 CANONICAL=A0A9J7G3X4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G3X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3X4/entry#A0A9J7G3X4-1", "sequence": { "sequence": "MTSQSCQRGPESAHMPHKGPCHTILCSPGSSLCGSSLGPPKKPGGHSNPAKSSTVVSSWVAGCQAGLLGLLLLLLWCMSMAGGLEVKTAEETQIVFLHANVTVPCEIPGSPHLDIKTVGIIWSFKNVWNESEVPIYELYGNHLKVLRPGANVSLLGLERGDASLHLPRIKLSEAGEYRCKLVVTPEHAEGMTRVDVVADPAIEFFVIPATERIGERLICKLDGFYPEAFDIKWERHSLKDSHFQVITEGVITGPTVRNDDGTFSVTSSLALKPAPGDHGIIYYCVVSHRSLLVPKKLNVILPKKGSVEIYVTIVSPCVLLVLVLILAAVYCLWTW", "length": 335, "header": "tr|A0A9J7G3X4-1|A0A9J7G3X4_CRIGR Isoform 1 of Natural cytotoxicity triggering receptor 3 ligand 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163672 PE=4 SV=1 CANONICAL=A0A9J7G3X4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"MRSSKSKEVPLPNPRSSQNKETVQDVVSSWDALSQTKAALRHIENKLEVTPTSTAVIDSVMDAKKSASATRKISRKDGRYLDDSWVSAPASKSSKPRKEKSRSPLRATTLESNVKKNSRVEFREPLVSYRETYGTPFSLSPSHLESKHVYCVHEEKAENGKQIIDHWEDRNIHCCDFESSQPSVIGDTVVRFLNDGPGIDAFHSSECLIKMGVHVRTEEELPNRAKGSENTSKLSLNMGHNVDPKVLLLSDSSPSSTSACNSQRLDISKRRQHDVKLEKLKERIRKQWEHSEEINGQVQTLGHIDHPVMVVNVDNSVTTKVRKVATAPPAPAYKGFNPSETKIRTPDGKVWQEAEFQSMSRELYRDLALQLADDTSVKEKPAEKNKEKKVVKPVRKIQKVTQLSNAECKTGSSRLISTSSWRDGQKLVKKILGPAPKMEQKERRPASNDRSGRERMAKFGGHIGRAESDPKLDISHKHLPRSSERSRSRVRSENNTVKSAPSLPDNKQEEKAALNKDFLPVEIRGILDDLQLDHAAQTARQEIGELQNQKSSAPVQVPRSHSPVKRKPDKIMANEDPPVISKKRHYDTDEVRQYIVRQQEERRRKQNEEKKAQKEATEQKNKRLQELYRRQREAFTKAKAVPPDLSASRRLQETYSKLLLEKTLLEEPAHQHVTQETQARPGYQPSGESDKENKVQERPPSASSSSDLSLSEPPQPLSRRDLMESTWMQPDRLSPRVHSSQAQPLVGTAENLLSHLLNLEHVGILRKDYDSVLPAKKSHNKTSGPLTFTPQPYLTSQAPHPDALLKPSTSQYKSKLDRIEALKATAASLSSRIESEAKKLAGASINYGSVWTTEYVKQAPQENGLWTKAVSPPVKEDIEDVFSARIQKMLGTCVSHATFDDDLPGVGNLSEFKKLPEMIRPQSAISSFRMTSPSPKPGGLLAQLCKRQADSCSDIQVCSQERAKRSLCSSIDSVSEGPLLSEGSLSEEEGGRDARTLLKVAEILKEKDYCAGERTAYEPIKEFQKEAEKFLPLLGHIGGTQSKGPWEELAKGSPHSVINIFTKSYQLYGKGFEDRGTLASRPFNATTTPLSIISYEDDFVSSPGSGTLTEKKPTLESQIGGSNLGIQEDHSSRKSAFDLSSVDGASQHSSGAQSALSSRSCASKGKKGRQDKIDWLDSFTGNAQSSRIDEEKVQSDSERGSHQGKKLGTGSKLAVRDYEQTLDSENTLEELSGHSVSGSSDKGRSQKTPTSPLSPSSQKLLQFDLPGTSLERSKSSAIVPPATTGFNPTAAFTDVNKIEMASTPGSKRFSPAGLQHRMAAELSYLSAIEESVRQLSDMERVRGISLAQQESVSLAQIIKAQQQRHERDLALLKLKAEQDALECQRQLEETRNKTAQAHSESLQQVVKSQREVTEVLQEATCKIAAQQTEAARLTTDAARQICEMAELTRTHISDAIGASGVPLTALYDHQRQHLPDFMKQLRTKTETDRISLSVSLSQSKEGALDSKHQKYSPSYDSYSESSRYRSQDRRSSGSSRQESPSVPSCKENEKKFHGDKMESSIDEQLQTAADDSLRSDSIPSLPDEKDSTSIATEYSLKFDESMTEDEIEEKSFRSLLPSESHRRFNMEKKRGHHDDSDEDASPDKTALSSAKELSMPFSGGQDSFSKFTMEMVRQYMKEEEMRAAHQSSLLRLREKALKEKTKAELAWLEHQKKHLRDKGEDDKMPPLRKKQRGLLLRLQQEKAEIKRLQEANKAARKERQLILKQQEEIERIRQTTIKLQEKLKSAGENKLGSHSDDDTKDNKAASPGPAGLETRSPSPISISSSETSSIMQKLKNMRSRMDEKFLTKREQKLMQRRQHAEELLEWKRRLDAEEAEIQQMEKQALAAWDKELVKPTTPKKELENQRTEQKGIASEEESPIPSYSHRNSENCIPEELGSPSVLCLPSESMIQVQPGSPDHSILTEEMVFSQELESTSPSKHSPPKSCSSVSKQESSKGSHRTEGHCHLPVKSHQPSYSWSDDSLSVTQSETTSDQSDIESRIRALKDELRKRRSVVEQLKKEQRKRQKERLKAQEASLIRQLETYDEFIKKTEGELSQDLDTSPTSKLQIKTLSSVSEKPKIKPHPLHRSETAKNWKSVTESERSRGSLASIAEHIDSLSCSERAISERSLFTSAKGVAVEEHLQASSPVVSSRKTGSEQGDSLESAPSLPPLMESRAPSRIYDVFEAKAEDSSQKSEIQELEYTKLEKSETEDACSKQSGRSEVLLRLDLNSEILSNKELPSDSTNIQNDLGKSAMEIFHEVLKENQCDQSTDHSPDIQSARETHEHKGREKGDTALSEHLSAPKESSYSEDFEVSSFKKGISAEVSSFKKGISAEEINKDDSEVSSSALRKDSQSYRDKSQPMRSSRSRASGFGSDDEISECLSEKSLSIHSSVHSERLLELKSPTELMKSKERSDVGHEQGITDSLSLAAVSAADELLDFHIGDRVLIGNVQPGTLRFKGETNFAKGFWAGVELDKPEGNNNGTYDGIEYFVCKDKHGIFAPPQKISHILENFNDYIDINEDEESYSDEHYQFYNQEQKDIKCLKDREDDIAEYFCEKSLASMHSIEASVDTDRSLNIETDNKLDNSGGLEAHVHQQSSVDPLISCKENKALVSDITDYVPDAAGATPDDTSSEESKLQHLAEKEENSYSQVSEKPSTPLLDLLTKEKNQLEAQLKSSISEEKKSNQQLETVSLLTDSLLKDFVKDTVSQLQQIKKSRNEKIQLSNQEILDQKEVLLQDPPQNIEEQLPSVPSCFLRSELEDEKEELSSPDMCPRPESPVFGASGQEELAKRLAELEISREFLSTLDDQDWFDEDFGLSSSHKIQKNKAEETIVPLMAEPKRAPQKPCETLLAVPHTAEEVESLVHNAAEELWKWKELGQDLHSLSIPKKLLGCASKGLDIESTSKRVYKQAVFDLTKEIFEEIFAEDPNLNQPVWMKPCRINSSYFRRVKNPNNLNEIKHFITTEVLKLFSLKKELNHKTDWQKMMKFGRKKRDRVDHILVQELHEEEAQWVNYDEDELCVKMQLADGIFETLIKDTIDVLNQISEKQGRMLLV", "length": 3097, "header": "tr|A0A9J7G3Y0-1|A0A9J7G3Y0_CRIGR Isoform 1 of Centrosome-associated protein 350 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep350 PE=4 SV=1 CANONICAL=A0A9J7G3Y0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2669, "start_aa": "Thr", "end_pos": 2669, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2669", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754786", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754786", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule anchoring", "id": "GO:0034453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034453", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1392, "end_pos": 1394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2524, "end_pos": 2526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2985, "end_pos": 2987, "annotation": "n_glycosylation_sequon" }, { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 780, "end_pos": 782, "annotation": "n_glycosylation_sequon" }, { "start_pos": 908, "end_pos": 910, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G3Y0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Y0" }, { "id": "PS50245", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50245" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CAP-Gly", "eco_id": "ECO_0000259", "start_pos": 2502, "end_pos": 2544, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2669 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1084, "end_pos": 1086 }, { "start_pos": 1392, "end_pos": 1394 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 2524, "end_pos": 2526 }, { "start_pos": 2985, "end_pos": 2987 }, { "start_pos": 494, "end_pos": 496 }, { "start_pos": 780, "end_pos": 782 }, { "start_pos": 908, "end_pos": 910 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G3Z6-1", "uniprot_ac": "A0A9J7G3Z6", "uniprot_id": "A0A9J7G3Z6_CRIGR", "mass": { "chemical_mass": 13280.0, "monoisotopic_mass": 13280.0 }, "refseq": { "ac": "XP_016830871", "name": "histone deacetylase 5-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830871" }, "gene_names": [ { "name": "LOC107980002", "type": "recommended", "evidence": [ { "id": "A0A9J7G3Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Z6" } ] }, { "name": "LOC107980002", "type": "synonym", "evidence": [ { "id": "XP_016830871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830871" } ] } ], "protein_names": [ { "name": "Histone deacetylase 5-like", "type": "synonym", "evidence": [ { "id": "A0A9J7G3Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3Z6/entry#names_and_taxonomy" } ] }, { "name": "histone deacetylase 5-like", "type": "synonym", "evidence": [ { "id": "XP_016830871", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NW_003613869.1) annotated using gene prediction method: Gnomon. 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neuropeptides B/W receptor type 2", "type": "synonym", "evidence": [ { "id": "XP_016836087", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836087" }, { "id": "A0A9J7G433", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G433/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases frameshifts :: corrected 6 indels internal stop codons :: corrected 2 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615430.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_016836087.1. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027276605.1. 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G470", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G470-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G470-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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CANONICAL=A0A9J7G4Z7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7/entry#A0A9J7G4Z7-1", "sequence": { "sequence": "MGPAMRRPLPRVRPLSGDAYLASWGGCQFFAPADRPLVPAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKESGRLQLLGLFPLQFVQLFVHDESRQQLKVKFRTGRAFYLQLRAPAETRDREFGRWVRLLYRLRFHSPACVVPFTHEDTAPEEEDEEEEEEEEGEEGQLRAPEVRAGPRAQGCWARKDGKEGPASSHRGQTGPAGLRTLGALI", "length": 251, "header": "tr|A0A9J7G4Z7-1|A0A9J7G4Z7_CRIGR Isoform 1 of Protein FAM71E1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam71e1 PE=3 SV=1 CANONICAL=A0A9J7G4Z7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7/entry#A0A9J7H0S2-1", "sequence": { "sequence": "MKGGRDLKPAPGGAGEAGSDGMADRPLVPAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKESGRLQLLGLFPLQFVQLFVHDESRQQLKVKFRTGRAFYLQLRAPAETRDREFGRWVRLLYRLRFHSPACVVPFTHEDTAPEEEDEEEEEEEEGEEGQLRAPEVRAGPRAQGCWARKDGKEGPASSHRGQTGPAGLRTLGALI", "length": 241, "header": "tr|A0A9J7H0S2-1|A0A9J7H0S2_CRIGR Computationally mapped isoform of Protein FAM71E1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam71e1 PE=3 SV=1 CANONICAL=A0A9J7G4Z7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G470" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G470" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Z7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Z7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G4Z7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Z7" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 176, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G480-1", "uniprot_ac": "A0A9J7G480", "uniprot_id": "A0A9J7G480_CRIGR", "mass": { "chemical_mass": 35098.0, "monoisotopic_mass": 35098.0 }, "refseq": { "ac": "XP_003503203", "name": "lck-interacting transmembrane adapter 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503203" }, "gene_names": [ { "name": "Lime1", "type": "recommended", "evidence": [ { "id": "A0A9J7G480", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480" } ] }, { "name": "Lime1", "type": "synonym", "evidence": [ { "id": "XP_003503203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503203" } ] } ], "protein_names": [ { "name": "Lck-interacting transmembrane adapter 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G480", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480/entry#names_and_taxonomy" } ] }, { "name": "lck-interacting transmembrane adapter 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003503203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503203" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003503203.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503203" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G480", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lime1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480", "locus": {} } ], "crossref": [ { "id": "A0A9J7G480", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G480", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767764", "url": "https://www.ncbi.nlm.nih.gov/gene/100767764", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767764", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767764", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G480", "url": "https://www.orthodb.org/?gene=A0A9J7G480", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47740", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47740", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47740:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47740:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15332", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15332", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503203", 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"tr|A0A9J7G480-1|A0A9J7G480_CRIGR Isoform 1 of Lck-interacting transmembrane adapter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lime1 PE=4 SV=1 CANONICAL=A0A9J7G480-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G480-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480/entry#A0A9J7G480-1", "sequence": { "sequence": "MKGLGVSGVLSQPGRKNPPSGQDLQIELQVCTGPSVSPQRSSLLSPGPLFCFYKMRPPVPSAPLALLFLGCFSLLLWLWALCTACHRKRAQRQQTGLQGSLIPVEMSLLRQTHLCSLSKSDTRLHELHQGTRCSIAPRPASMDFLHPHWLEASRGSTRSQVTPSAFSSRQLPRAPPAAPATASSTSPEATYSNVGLAAIPRASLAASPMVWAGTQLTISCAKLGPGAEYACIQKHKETEQGYQESQQKTKMIPAPQMDLLYSRVCKPKRRDPRPVTDEPDPQGGRAILALGSDVEYEAITLRGQDVNQDPLENVYESIREVGP", "length": 323, "header": "tr|A0A9J7G480-1|A0A9J7G480_CRIGR Isoform 1 of Lck-interacting transmembrane adapter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lime1 PE=4 SV=1 CANONICAL=A0A9J7G480-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480/entry#A0A9J7JQS8-1", "sequence": { "sequence": "MKGLGVSGVLSQPGRKNPPSGQDLQIELQVCTGPSVSPQRSSLLSPGPLFCFYKMRPPVPSAPLALLFLGCFSLLLWLWALCTACHRKRAQRQQTGLQGSLIPVEMSLLRQTHLCSLSKSDTRLHELHQGTRCSIAPRPASMDFLHPHWLEASRGSTRSQVTPSAFSSRQLPRAPPAAPATASSTSPEATYSNVGLAAIPRASLAASPMVWAGTQLTISCAKLGPGAEYACIQKHKETEQGYQESQQKTKMIPAPQGPLYRWQPCMLGVLRVTRTSGCGPRSLREPRLEP", "length": 290, "header": "tr|A0A9J7JQS8-1|A0A9J7JQS8_CRIGR Computationally mapped isoform of Lck-interacting transmembrane adapter 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lime1 PE=4 SV=1 CANONICAL=A0A9J7G480-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 162, "start_aa": "Thr", "end_pos": 162, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr162", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G480", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G480", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767764", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767764", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G480", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G480" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "T cell receptor signaling pathway", "id": "GO:0050852", "url": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G4F5-1", "uniprot_ac": "A0A9J7G4F5", "uniprot_id": "A0A9J7G4F5_CRIGR", "mass": { "chemical_mass": 58969.0, "monoisotopic_mass": 58969.0 }, "refseq": { "ac": "XP_027275886", "name": "LOW QUALITY PROTEIN: ceramide kinase-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275886" }, "gene_names": [ { "name": "Cerkl", "type": "recommended", "evidence": [ { "id": "A0A9J7G4F5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4F5" } ] }, { "name": "Cerkl", "type": "synonym", "evidence": [ { "id": "XP_027275886", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275886" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: ceramide kinase-like protein", "type": "synonym", "evidence": [ { "id": "XP_027275886", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275886" }, { "id": "A0A9J7G4F5", 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275886", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275886" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4F5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4F5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cerkl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4F5", "locus": {} } ], "crossref": [ { "id": "100762029", "url": "https://www.ncbi.nlm.nih.gov/gene/100762029", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001206", "database": "InterPro", "categories": [ "Protein Classification" ] 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This record is derived from a genomic sequence (NW_003613966.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4J0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4J0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757988", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757988", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y7Z5-1", "protein_name": "Coiled-coil domain containing 148", "gene_name": "CCDC148", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTAQRIRDVENLVNPMRNAPCSQKYKPIDYKHLCELTAAEKVASTKIQFKIKKVEQISKINKEQMLLKQHCQVWWREYKRLSENREKAEAEIQTLLDEGSHKYDFFLDMWDLEHKLSQERDAYQTDTVAPIWQLRENLKFWLTEMQHYVTEDSSLRNKFSLAEKLQQIESVKKEWKTNLEFLNLESLALERELQDYKIEAIVHGFEEKNGLFHEVPSALLSLEFPYPDLRSFVINEYRKLANEYWSKLQEIDQQLNVIYRNTDWKAEDQWIFQTVVNQYPSDLQRRRTLYLDMLQRCLPHKSRHELITHEKAWDHYNFFKNQRRVLILNWTQARKAFFLKAVMAVAEASAAQEAEAVSAGNRRKQQEICVELKAKVLQWRAQQEEAAELEAAVAARRKEKEDEKERIQKEQEMIHRAQEKEKVKKYLAEKQLKWQEQEEKELQHLKELRKLMAKQAVKDRERVKFRQALLERRILEKKEEALREAHAAEEKEKCLEALRQKVSVVAKPDPARVVADTAASKARMGVGTTEEFVLQKPLFQLQTYSEEQIISDPRLRVELALREAGLHKTLYAKEILPKIPPLKLPRRDTESTVFKM", "length": 597 }, "evidence": [ { "id": "A0A9J7G4J0", "url": "https://omabrowser.org/oma/group/A0A9J7G4J0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9PU06-1", "protein_name": "Coiled-coil domain containing 148", "gene_name": "Ccdc148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNRRDQPFTVIQRNDSSDILAVHMKGGMKNSRYKPADYQQLRALTEATKSASASSEQKIRKAMETSRAAKEQMLIKQHKQVWWQEQERLKGIRCKLESEIRSRLNEESIGDECFCELMNFEKELSEQWCAYLTAVIDPLHQLRTGLKKQRHTLQSASCHKGPESTTILEEVDFVKKQSKAAFERLHQEQQHLEEELSDWSVELLGHSSEEKSNLLSGQPTELETLDCPYPDLKSSILNEFSNFTEKYQEELEDFDLQLEDIRSNFQLSEEEQWIYQAVLDQYPGNLLGRRALYLDMLQRYFPHKSRHHLVEHERYCDQYHFTREQRRILIDNWNRSREDFIQKATLTLLEACEAHEMESMLAKDRKRQQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREETEIKIRKYWAKKQQEWQEMEMRDLQRLEELKKLMAEQSVKDRERVKYRQELLEKRLMDRKKLALQEVQEEEERERRLEALRKQVAVAVRSDPVRMMSETLAWKARIGAVSEEEFTLQKPLFTLTTYNEQQIISDPRLRFELALREAGLHKTQYAKEMLPKIGPQKPPRKDTESTVFKI", "length": 599 }, "evidence": [ { "id": "A0A9J7G4J0", "url": "https://omabrowser.org/oma/group/A0A9J7G4J0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P5U8-1", "protein_name": "Coiled-coil domain-containing protein 148", "gene_name": "Ccdc148", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLIKQHKQVWWQEQERLKGIRCKLESEIRSCLNEESIGSECFCELMNFEKELSEEWCAYLTAVIDPIQQLRTGLKRWYPTSQSAPCHEGSDATEVLEEVDFVKKQSKAAFERLHQEQWHLEEDLLDLSVKLLDHSSEEKPNLLSEQPMELVTLDCPYPDLKSSILNEFCNFTERYQEKLEDFDLQLEDIRSNFQLSAEEHWTYQAVLDQYPGNLLGRRALYLDMLQRYFPHKSRHHLVEHEKYCDQYHFAREQRRILIDNWSRSRKDFIQKAMLTLLEACAAHEMGSLLAKDRRRQQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREETEIKIRKYWAMKQQKWQEMEKRDLRRLEELKKLMAEQSVKDRERVKYRQELLEKRLMERKKLALQEVQEEEERERRLEALRKQVAVAVQSDPVRMMSETLAWKARTGSESEEEFILQKPLFTLTTYNEQQIISDPRLRFELALREAGLHKTQYAKEMLPKIGPQKPPRKDTESTVFKV", "length": 527 }, "evidence": [ { "id": "A0A9J7G4J0", "url": "https://omabrowser.org/oma/group/A0A9J7G4J0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFR7-1", "protein_name": "Coiled-coil domain-containing protein 148", "gene_name": "CCDC148", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLSKEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRLRFELALREAGLHRTLYAKEILPKISPQKPPRKDMESTVFKI", "length": 591 }, "evidence": [ { "id": "A0A9J7G4J0", "url": "https://omabrowser.org/oma/group/A0A9J7G4J0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 241, "end_pos": 243 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G4N7-1", "uniprot_ac": "A0A9J7G4N7", "uniprot_id": "A0A9J7G4N7_CRIGR", "mass": { "chemical_mass": 20257.0, "monoisotopic_mass": 20257.0 }, "refseq": { "ac": "XP_027274663", "name": "protein SOGA3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274663" }, "gene_names": [ { "name": "LOC113836094", "type": "recommended", "evidence": [ { "id": "A0A9J7G4N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7" } ] }, { "name": "LOC113836094", "type": "synonym", "evidence": [ { "id": "XP_027274663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274663" } ] } ], "protein_names": [ { "name": "Protein SOGA3", "type": "synonym", "evidence": [ { "id": "A0A9J7G4N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7/entry#names_and_taxonomy" } ] }, { "name": "protein SOGA3", "type": "synonym", "evidence": [ { "id": "XP_027274663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274663" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274663" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836094", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4N7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4N7", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836094", "url": "https://www.ncbi.nlm.nih.gov/gene/113836094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836094", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027274663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274663", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAAGAWGRAGRGYGATAEAPARFRRRLASAVRPASGSPQSRARRAWRPREQGRHYEGPLRLPRPQPARTSAGGWEGAAGGAEGPRGGADGGDAGWRRSSAPVCPPRRAAPRRRGAQDGGPGSVPTCAFPFLLLRHLGAEPVAWEMPITSPAGRASPACGREPLGARGSSRFRPGPAPLPQPSPGVLRPRGVVY", "length": 194, "header": "tr|A0A9J7G4N7-1|A0A9J7G4N7_CRIGR Isoform 1 of Protein SOGA3 OS=Cricetulus griseus OX=10029 GN=LOC113836094 PE=4 SV=1 CANONICAL=A0A9J7G4N7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4N7/entry#A0A9J7G4N7-1", "sequence": { "sequence": "MEAAGAWGRAGRGYGATAEAPARFRRRLASAVRPASGSPQSRARRAWRPREQGRHYEGPLRLPRPQPARTSAGGWEGAAGGAEGPRGGADGGDAGWRRSSAPVCPPRRAAPRRRGAQDGGPGSVPTCAFPFLLLRHLGAEPVAWEMPITSPAGRASPACGREPLGARGSSRFRPGPAPLPQPSPGVLRPRGVVY", "length": 194, "header": "tr|A0A9J7G4N7-1|A0A9J7G4N7_CRIGR Isoform 1 of Protein SOGA3 OS=Cricetulus griseus OX=10029 GN=LOC113836094 PE=4 SV=1 CANONICAL=A0A9J7G4N7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274838" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163900", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W0", "locus": {} } ], "crossref": [ { "id": "A0A9J7G4W0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G4W0", "database": "AlphaFoldDB", "categories": [] }, { "id": "103163900", "url": "https://www.ncbi.nlm.nih.gov/gene/103163900", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163900", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23158:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23158:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027274838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274838", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G4W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRHLPCPCWPSETSGKHSASDPGPGPMMNSSSGSSSPAKAMDESQVNMPPRGPPPFPGSPLFGAPLGSPVPPPTRYGPPPPLIGPFGPRPVPPPFDPGPGPMMNSSSGSSSPTKAMDESQVNMPPRGPPPFPGSPLFGAPLGSPVPPPTRYGPPPPLIGPFGPRPVPPPFVPGMGPPLGIREYAPGVLPGKRDLPVDPREFLLGHAPFRPPGSLGPREYFIPGARLPPPTHGPQDYPLPQPAARDLLPPGPREEAPPASPSSVQDSSSAQNPSLNFV", "length": 278, "header": "tr|A0A9J7G4W0-1|A0A9J7G4W0_CRIGR Isoform 1 of Transport and Golgi organization protein 1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163900 PE=4 SV=1 CANONICAL=A0A9J7G4W0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W0/entry#A0A9J7G4W0-1", "sequence": { "sequence": "MDRHLPCPCWPSETSGKHSASDPGPGPMMNSSSGSSSPAKAMDESQVNMPPRGPPPFPGSPLFGAPLGSPVPPPTRYGPPPPLIGPFGPRPVPPPFDPGPGPMMNSSSGSSSPTKAMDESQVNMPPRGPPPFPGSPLFGAPLGSPVPPPTRYGPPPPLIGPFGPRPVPPPFVPGMGPPLGIREYAPGVLPGKRDLPVDPREFLLGHAPFRPPGSLGPREYFIPGARLPPPTHGPQDYPLPQPAARDLLPPGPREEAPPASPSSVQDSSSAQNPSLNFV", "length": 278, "header": "tr|A0A9J7G4W0-1|A0A9J7G4W0_CRIGR Isoform 1 of Transport and Golgi organization protein 1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163900 PE=4 SV=1 CANONICAL=A0A9J7G4W0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276503", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276503" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Irf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W7", "locus": {} } ], "crossref": [ { "id": "cd00103", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00103", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765676", "url": "https://www.ncbi.nlm.nih.gov/gene/100765676", "database": "GeneID", "categories": [ "Genome 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"MGTPKPRILPWLVSQLDLGQLKGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQVLGAKDFERLWKTLERRSWAWLGRGGVLLMKAWAEASGAYTPGKDKPDLSTWKRNFRSALNRKEVLRLADDKSKDPFDPHKVYEFVTPAARDFVHLDTSPDTNGKSSLSDPQEDLLELLDGMILEPLLQDGGSSGEAIAPDHSQLLPSPNLDNILNMAPQENPLRQLLAEEQWEFEVTAFYRGRQVFQQTLFCPGGLRLVGTTADNRTLPGQPVTLPDPEEFLTDRLAREYVRHVLKGLGKGLALWRSGQCLWAQRLGHSHSFWALGEELLPDSGRGPDGEVPKDKDGGVFDLGPFVADLIAFMEGSGHSPRYTLWFCVGETWPQDQPWVKRLVMVKVVPTCLKELLEMAREGGASSLRTVDLHISNSQPVSLTSDQYKAYLQDLVEDMDFQATGDT", "length": 452, "header": "tr|A0A9J7G4W7-1|A0A9J7G4W7_CRIGR Isoform 1 of Interferon regulatory factor 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Irf3 PE=4 SV=1 CANONICAL=A0A9J7G4W7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W7/entry#A0A9J7H4S2-1", "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765676", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765676", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4W7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4W7", "url": 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"MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVELLREKVVCVAAGLRHALATTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKISCGSEHNLAVISDKCFSWGWNEHGMCGDGTESNVWTPSPVQALQSPSRILLVGCGAGHSLALCQLPALSEPCQDVKVIYTLQAATGNPESQNGMNKERNRKERQSVTSTQSNSDRTRNEGP", "length": 463, "header": "tr|A0A9J7G6W9-1|A0A9J7G6W9_CRIGR Isoform 1 of Secretion-regulating guanine nucleotide exchange factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4Y3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9/entry#A0A9J7G4Y3-1", "sequence": { "sequence": "MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKISCGSEHNLAVISDKCFSWGWNEHGMCGDGTESNVWTPSPVQALQSPSRILLVGCGAGHSLALCQLPALSEPCQDVKVIYTLQAATGNPESQNGMNKERNRKERQSVTSTQSNSDRTRNEGP", "length": 411, "header": "tr|A0A9J7G4Y3-1|A0A9J7G6W9_CRIGR Computationally mapped isoform of Secretion-regulating guanine nucleotide exchange factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9/entry#A0A9J7G4Z9-1", "sequence": { "sequence": "MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVELLREKVVCVAAGLRHALATTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKLIQIGSCTHGTGWSCLELPAHGHQWAAMEPVE", "length": 373, "header": "tr|A0A9J7G4Z9-1|A0A9J7G4Z9_CRIGR Computationally mapped isoform of Secretion-regulating guanine nucleotide exchange factor isoform X6 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9/entry#A0A9J7G6W7-1", "sequence": { "sequence": "MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVELLREKVVCVAAGLRHALATTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKVTSVFPGAGTNMACVEMALSPTSGLHPQYRLFSHHQESSSWAVGLATPWPYVSCQHSLSRARMSRSSTHSKLPQGTLNLRMA", "length": 423, "header": "tr|A0A9J7G6W7-1|A0A9J7G6W7_CRIGR Computationally mapped isoform of Secretion-regulating guanine nucleotide exchange factor isoform X3 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9/entry#A0A9J7G6W9-1", "sequence": { "sequence": "MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVELLREKVVCVAAGLRHALATTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKISCGSEHNLAVISDKCFSWGWNEHGMCGDGTESNVWTPSPVQALQSPSRILLVGCGAGHSLALCQLPALSEPCQDVKVIYTLQAATGNPESQNGMNKERNRKERQSVTSTQSNSDRTRNEGP", "length": 463, "header": "tr|A0A9J7G6W9-1|A0A9J7G6W9_CRIGR Isoform 1 of Secretion-regulating guanine nucleotide exchange factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9/entry#A0A9J7G9C9-1", "sequence": { "sequence": "MCMAHKSCVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQRLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVELLREKVVCVAAGLRHALATTVSGSVFQWGTGLASSGRRLCAGQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTDTGELYVWGRNKHGQLASLAAFLLLPQRIDARCFQDEKVTAVWSGWTHLVAQTETGKVFTWGRADYGQLGRRLESPEGQKPHKQDSQLTFWRPQSSVSLPLCCLTGAAKGLLSSLHTRKHAWRVKGLGRAGYWDVLAPCERLNGSVIQPFLQGACCLTS", "length": 391, "header": "tr|A0A9J7G9C9-1|A0A9J7G9C9_CRIGR Computationally mapped isoform of Secretion-regulating guanine nucleotide exchange factor isoform X5 OS=Cricetulus griseus OX=10029 GN=Sergef PE=4 SV=1 CANONICAL=A0A9J7G6W9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Y3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Y3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836303", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836303", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G6W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6W9" }, { "id": "PF25390", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RCC1-like", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 403, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G506-1", "uniprot_ac": "A0A9J7G506", "uniprot_id": "A0A9J7G506_CRIGR", "mass": { "chemical_mass": 56948.0, "monoisotopic_mass": 56948.0 }, "refseq": { "ac": "XP_003510244", "name": "kallikrein-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510244" }, "gene_names": [ { "name": "LOC100754155", "type": "recommended", "evidence": [ { "id": "A0A9J7G506", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506" } ] }, { "name": "LOC100754155", "type": "synonym", "evidence": [ { "id": "XP_003510244", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510244" } ] } ], "protein_names": [ { "name": "Kallikrein-1", "type": "synonym", "evidence": [ { "id": "A0A9J7G506", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506/entry#names_and_taxonomy" } ] }, { "name": "kallikrein-1", "type": "synonym", "evidence": [ { "id": "XP_003510244", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510244" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614844.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003510244.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510244", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510244" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G506", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754155", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506", "locus": {} } ], "crossref": [ { "id": "A0A9J7G506", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G506", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754155", "url": "https://www.ncbi.nlm.nih.gov/gene/100754155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754155", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G506", "url": "https://www.orthodb.org/?gene=A0A9J7G506", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510244", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510244", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G506", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G506-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLLLAFVLLVSAAQDGDKVLEGEECAPHSQPWQVALFERGRFNCGAFLISPHWVLTAAHCQTRFMRVRLGEHNLRKHDGPEQVRSVSRIIPHPGYEARTHRHDIMLLRLLHPARLSSQVHPVALPTRCPFTGEDCVVSGWGLLSANKPGDSESHKSQVRLPDTLHCANISIISEASCNKDYPGRVLPTMVCAGVEGRGTDSCEGDSGGPLVCRGALQGIVSWGDVPCDTTTKPGVYTKVCSYLKWIRENMKRNAMWFLTLFAALFLGETGAAPPIQSRIIGGSDCEKSSQPWQAAIYHYTKFQCGGILVDPKWVLTAAHCYSDKYQVWLGRNSLDENEPSAQHLFVHKSFPHPDFNMDLLKNNSQNLEADYSNDLMLLQLTQPAEITDSVKVLSLPTEEPTMGSTCLASGWGSVEPIDFEYPENLQCVNLKLLPIEECIKAHAQKVTDLMLCAGDLEEGKDTCVGDSGGPLICDGMFQGVTSWGPAPCGKPDKPGIYTKLIEFVPWINEVIKEHS", "length": 516, "header": "tr|A0A9J7G506-1|A0A9J7G506_CRIGR Isoform 1 of Kallikrein-1 OS=Cricetulus griseus OX=10029 GN=LOC100754155 PE=3 SV=1 CANONICAL=A0A9J7G506-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G506-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506/entry#A0A9J7G506-1", "sequence": { "sequence": "MWLLLAFVLLVSAAQDGDKVLEGEECAPHSQPWQVALFERGRFNCGAFLISPHWVLTAAHCQTRFMRVRLGEHNLRKHDGPEQVRSVSRIIPHPGYEARTHRHDIMLLRLLHPARLSSQVHPVALPTRCPFTGEDCVVSGWGLLSANKPGDSESHKSQVRLPDTLHCANISIISEASCNKDYPGRVLPTMVCAGVEGRGTDSCEGDSGGPLVCRGALQGIVSWGDVPCDTTTKPGVYTKVCSYLKWIRENMKRNAMWFLTLFAALFLGETGAAPPIQSRIIGGSDCEKSSQPWQAAIYHYTKFQCGGILVDPKWVLTAAHCYSDKYQVWLGRNSLDENEPSAQHLFVHKSFPHPDFNMDLLKNNSQNLEADYSNDLMLLQLTQPAEITDSVKVLSLPTEEPTMGSTCLASGWGSVEPIDFEYPENLQCVNLKLLPIEECIKAHAQKVTDLMLCAGDLEEGKDTCVGDSGGPLICDGMFQGVTSWGPAPCGKPDKPGIYTKLIEFVPWINEVIKEHS", "length": 516, "header": "tr|A0A9J7G506-1|A0A9J7G506_CRIGR Isoform 1 of Kallikrein-1 OS=Cricetulus griseus OX=10029 GN=LOC100754155 PE=3 SV=1 CANONICAL=A0A9J7G506-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G506", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G506", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G506", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G506" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"uniprot_canonical_ac": "A0A9J7G515-1", "uniprot_ac": "A0A9J7G515", "uniprot_id": "A0A9J7G515_CRIGR", "mass": { "chemical_mass": 25561.0, "monoisotopic_mass": 25561.0 }, "refseq": { "ac": "XP_027273977", "name": "cleavage and polyadenylation specificity factor subunit 6-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273977" }, "gene_names": [ { "name": "LOC113836000", "type": "recommended", "evidence": [ { "id": "A0A9J7G515", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515" } ] }, { "name": "LOC113836000", "type": "synonym", "evidence": [ { "id": "XP_027273977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273977" } ] } ], "protein_names": [ { "name": "Cleavage and polyadenylation specificity factor subunit 6-like", "type": "synonym", "evidence": [ { "id": "A0A9J7G515", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515/entry#names_and_taxonomy" } ] }, { "name": "cleavage and polyadenylation specificity factor subunit 6-like", "type": "synonym", "evidence": [ { "id": "XP_027273977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273977" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273977", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273977" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G515", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515", "locus": {} } ], "crossref": [ { "id": "A0A9J7G515", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G515", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836000", "url": "https://www.ncbi.nlm.nih.gov/gene/113836000", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836000", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027273977", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273977", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G515", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G515-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAAGRSGASIFAAPSPGLCPRRPDPANEGARRFPTWSLLGAQLRLHPRERARGRHGPRPRRPPGLPGPPGPARPRAVRTRGGRPFPAERAPRRRSASSRRRPCAQSSPPSPPPPHHVPHPRLRHRETRSRPPWIEPARPRAQAAGPECRPEARRVHDTLAAVVPRLPAACGALGAFVRLRTRPGLAGIRPVARGTRERRRRACWRPPLERCSPSATGSRPSHQRHSNILRV", "length": 232, "header": "tr|A0A9J7G515-1|A0A9J7G515_CRIGR Isoform 1 of Cleavage and polyadenylation specificity factor subunit 6-like OS=Cricetulus griseus OX=10029 GN=LOC113836000 PE=4 SV=1 CANONICAL=A0A9J7G515-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G515-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G515/entry#A0A9J7G515-1", "sequence": { "sequence": "MSAAGRSGASIFAAPSPGLCPRRPDPANEGARRFPTWSLLGAQLRLHPRERARGRHGPRPRRPPGLPGPPGPARPRAVRTRGGRPFPAERAPRRRSASSRRRPCAQSSPPSPPPPHHVPHPRLRHRETRSRPPWIEPARPRAQAAGPECRPEARRVHDTLAAVVPRLPAACGALGAFVRLRTRPGLAGIRPVARGTRERRRRACWRPPLERCSPSATGSRPSHQRHSNILRV", "length": 232, "header": "tr|A0A9J7G515-1|A0A9J7G515_CRIGR Isoform 1 of Cleavage and polyadenylation specificity factor subunit 6-like OS=Cricetulus griseus OX=10029 GN=LOC113836000 PE=4 SV=1 CANONICAL=A0A9J7G515-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027277232" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027277232.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277232" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G563" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Actl10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G563", "locus": {} } ], "crossref": [ { "id": "A0A9J7G563", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G563", "database": "AlphaFoldDB", "categories": [] }, { "id": "103160901", "url": "https://www.ncbi.nlm.nih.gov/gene/103160901", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160901", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160901", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G563", "url": "https://www.orthodb.org/?gene=A0A9J7G563", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37335", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37335", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37335:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37335:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15318", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15318", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G563", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G563-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G563-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPWGLGGWVLQMRGSGFMPCSGAFFPSQRAHPQTKIVLLFPLDKRQQLAEAAAGPYARPGRPAEDVLGAPTCFPAVAPMLRGAGDGVDRREGARAREMKRILVLLLQLDARLQEEGRRGAGGRGGGAKAPQGWQPLYAHLLTHREACGESDPREEQPRKRRRCPRPRP", "length": 169, "header": "tr|A0A9J7G563-1|A0A9J7G563_CRIGR Isoform 1 of Actin-like protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Actl10 PE=4 SV=1 CANONICAL=A0A9J7G563-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G563-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G563/entry#A0A9J7G563-1", "sequence": { "sequence": "MAPWGLGGWVLQMRGSGFMPCSGAFFPSQRAHPQTKIVLLFPLDKRQQLAEAAAGPYARPGRPAEDVLGAPTCFPAVAPMLRGAGDGVDRREGARAREMKRILVLLLQLDARLQEEGRRGAGGRGGGAKAPQGWQPLYAHLLTHREACGESDPREEQPRKRRRCPRPRP", "length": 169, "header": "tr|A0A9J7G563-1|A0A9J7G563_CRIGR Isoform 1 of Actin-like protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Actl10 PE=4 SV=1 CANONICAL=A0A9J7G563-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027276516.1. 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X2 OS=Cricetulus griseus OX=10029 GN=Mex3d PE=4 SV=1 CANONICAL=A0A9J7G5D0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 377, "start_aa": "Thr", "end_pos": 377, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr377", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276769" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5E5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5E5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pax1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5E5", "locus": {} } ], "crossref": [ { "id": "cd00131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769445", "url": "https://www.ncbi.nlm.nih.gov/gene/100769445", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769445", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769445", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G5E5", "url": "https://www.orthodb.org/?gene=A0A9J7G5E5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00292", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00292", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276769", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G5E5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5E5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFTLGLGSRAWRVSWERAAAAAAVGPGAGGALAAAHXRVSSRRGPRLARALPLCLSGGGGARALPDCAGPSPRRSGARQLTGPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQTPPQPALPYNHIYQYPYPSPVSPTGTKMGSHPGVPGSAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALSAGEGAAYSPKMEDWAGVNRAAFPASPAVNGLEKPALEADIKYTQTASSLSAVGGFLPACAYPASNQHSVYSAPAAGYLSPGPPWPPAQGPPLAPHGAGVAVHGGELAAAMTFKHPSREGADRKPPSPGSKATDALGSLHGLPIPASTS", "length": 449, "header": "tr|A0A9J7G5E5-1|A0A9J7G5E5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: paired box protein Pax-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pax1 PE=4 SV=1 CANONICAL=A0A9J7G5E5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G5E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5E5/entry#A0A9J7G5E5-1", "sequence": { "sequence": "MKFTLGLGSRAWRVSWERAAAAAAVGPGAGGALAAAHXRVSSRRGPRLARALPLCLSGGGGARALPDCAGPSPRRSGARQLTGPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQTPPQPALPYNHIYQYPYPSPVSPTGTKMGSHPGVPGSAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALSAGEGAAYSPKMEDWAGVNRAAFPASPAVNGLEKPALEADIKYTQTASSLSAVGGFLPACAYPASNQHSVYSAPAAGYLSPGPPWPPAQGPPLAPHGAGVAVHGGELAAAMTFKHPSREGADRKPPSPGSKATDALGSLHGLPIPASTS", "length": 449, "header": "tr|A0A9J7G5E5-1|A0A9J7G5E5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: paired box protein Pax-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pax1 PE=4 SV=1 CANONICAL=A0A9J7G5E5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276720" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771591", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5F2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5F2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771591", "url": "https://www.ncbi.nlm.nih.gov/gene/100771591", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771591", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771591", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G5F2", "url": "https://www.orthodb.org/?gene=A0A9J7G5F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276720", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G5F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKLNNVTEFILLGITNNLELRKILSVLFLVMYLATMLGNILIVVTITRSPGLNSPMYFFLKSLSFMEVTYSSIITPKLIVDSFSEIISISVSGCMTQLFVDHFFGGVVIILLIVMAYDRYVAICKPLHYMTIMSPRVCCLMVGGTWVGGFAHAIIQLLFMYQIPFCGPNIIDHFMCDLFPLLKLACMDTYILGLLVILNSGVICTAIFLILTSSYVIILCSLKSCSSEGRRKALSTCTSHFTVVVLFFVPCIFLYVRPVVTYPVDKIMAVSFTVIEPMLNPLIYTLRNSEVKNAIRRLLMKQGTLGGHLFAWRN", "length": 315, "header": "tr|A0A9J7G5F2-1|A0A9J7G5F2_CRIGR Isoform 1 of Olfactory receptor 4C6-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100771591 PE=3 SV=1 CANONICAL=A0A9J7G5F2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G5F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F2/entry#A0A9J7G5F2-1", "sequence": { "sequence": "MEKLNNVTEFILLGITNNLELRKILSVLFLVMYLATMLGNILIVVTITRSPGLNSPMYFFLKSLSFMEVTYSSIITPKLIVDSFSEIISISVSGCMTQLFVDHFFGGVVIILLIVMAYDRYVAICKPLHYMTIMSPRVCCLMVGGTWVGGFAHAIIQLLFMYQIPFCGPNIIDHFMCDLFPLLKLACMDTYILGLLVILNSGVICTAIFLILTSSYVIILCSLKSCSSEGRRKALSTCTSHFTVVVLFFVPCIFLYVRPVVTYPVDKIMAVSFTVIEPMLNPLIYTLRNSEVKNAIRRLLMKQGTLGGHLFAWRN", "length": 315, "header": "tr|A0A9J7G5F2-1|A0A9J7G5F2_CRIGR Isoform 1 of Olfactory receptor 4C6-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100771591 PE=3 SV=1 CANONICAL=A0A9J7G5F2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"crossref": [ { "id": "A0A9J7G5L6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5L6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761072", "url": "https://www.ncbi.nlm.nih.gov/gene/100761072", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761072", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761072", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G5L6", "url": "https://www.orthodb.org/?gene=A0A9J7G5L6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12121:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12121:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "85011", "url": "https://www.rhea-db.org/rhea/85011", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85191", "url": "https://www.rhea-db.org/rhea/85191", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LEU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LEU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LEU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LEU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIASCLCYLLLPAARLFRSLTDAFFTCRKNALLAKSSSPQVEGNFAMAPRGPDQEECEGLLQQWREEGWNQALSTASEGPLADKGLAESSLALLMDNSGEQDAASEDKWSSRQLSDLRAAENLDQPFPEVLGEEPLAEVEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVAWSIAPEPMSQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTACHPKRSERRKYGRDFLLRFRFCNIACQRPVGLVLMEGVTDTKPDRPAGWAESFFEEEISELEPVFSRSIGSIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAEPCENENRTGKLDHRLDRDGTLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP", "length": 670, "header": "tr|A0A9J7G5L6-1|A0A9J7G5L6_CRIGR Isoform 1 of RNA 2',3'-cyclic phosphatase ANGEL1 OS=Cricetulus griseus OX=10029 GN=Angel1 PE=3 SV=1 CANONICAL=A0A9J7G5L6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LEU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6/entry#A0A8C2LEU8-1", "sequence": { "sequence": "MIASCLCYLLLPAARLFRSLTDAFFTCRKNALLAKSSSPQVEGNFAMAPRGPDQEECEGLLQQWREEGWNQALSTASEGPLADKGLAESSLALLMDNSGEQDAASEDKWSSRQLSDLRAAENLDQPFPEVLGEEPLAEVEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVAWSIAPEPMSQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTACHPKRSERRKYGRDFLLRFRFCNIACQRPVGLVLMEGVTDTKPDRPAGWAESFFEEEISELEPVFSRSIGSIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAEPCENENRTDHRLDRDGTLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP", "length": 667, "header": "tr|A0A8C2LEU8-1|A0A8C2LEU8_CRIGR Computationally mapped isoform of RNA 2',3'-cyclic phosphatase ANGEL1 OS=Cricetulus griseus OX=10029 GN=Angel1 PE=3 SV=1 CANONICAL=A0A9J7G5L6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6/entry#A0A9J7G5L6-1", "sequence": { "sequence": "MIASCLCYLLLPAARLFRSLTDAFFTCRKNALLAKSSSPQVEGNFAMAPRGPDQEECEGLLQQWREEGWNQALSTASEGPLADKGLAESSLALLMDNSGEQDAASEDKWSSRQLSDLRAAENLDQPFPEVLGEEPLAEVEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVAWSIAPEPMSQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTACHPKRSERRKYGRDFLLRFRFCNIACQRPVGLVLMEGVTDTKPDRPAGWAESFFEEEISELEPVFSRSIGSIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAEPCENENRTGKLDHRLDRDGTLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP", "length": 670, "header": "tr|A0A9J7G5L6-1|A0A9J7G5L6_CRIGR Isoform 1 of RNA 2',3'-cyclic phosphatase ANGEL1 OS=Cricetulus griseus OX=10029 GN=Angel1 PE=3 SV=1 CANONICAL=A0A9J7G5L6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761072", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761072", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "eukaryotic initiation factor 4E binding", "id": "GO:0008190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008190", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "RNA 2',3'-cyclic phosphatase activity", "id": "GO:0160272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160272", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process, non-stop decay", "id": "GO:0070481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070481", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" }, { "name": "cis-Golgi network", "id": "GO:0005801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005801", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 612, "end_pos": 614, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "85011", "name": "", "equation": "a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + 2 H2O = a 3'-end ribonucleotide-RNA + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85011", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85011" } ] }, { "id": "85191", "name": "", "equation": "a 3'-end 2'-phospho-ribonucleotide-RNA + H2O = a 3'-end ribonucleotide-RNA + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85191", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85191" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G5L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5L6" }, { "id": "PF03372", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endonuclease/exonuclease/phosphatase", "eco_id": "ECO_0000259", "start_pos": 245, "end_pos": 605, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 612, "end_pos": 614 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G5P1-1", "uniprot_ac": "A0A9J7G5P1", "uniprot_id": "A0A9J7G5P1_CRIGR", "mass": { "chemical_mass": 110468.0, "monoisotopic_mass": 110468.0 }, "refseq": { "ac": "XP_027275350", "name": "LOW QUALITY PROTEIN: cation channel sperm-associated protein subunit beta-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275350" }, "gene_names": [ { "name": "LOC100751495", "type": "recommended", "evidence": [ { "id": "A0A9J7G5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P1" } ] }, { "name": "LOC100751495", "type": "synonym", "evidence": [ { "id": "XP_027275350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275350" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: cation channel sperm-associated protein subunit beta-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027275350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275350" }, { "id": "A0A9J7G5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275350" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5P1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P1", "locus": {} } ], "crossref": [ { "id": "cd05482", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05482", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751495", "url": "https://www.ncbi.nlm.nih.gov/gene/100751495", "database": "GeneID", "categories": [ 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"tr|A0A9J7G5P1-1|A0A9J7G5P1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cation channel sperm-associated protein subunit beta-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751495 PE=4 SV=1 CANONICAL=A0A9J7G5P1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273594" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5S4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S4", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5S4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5S4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758447", "url": "https://www.ncbi.nlm.nih.gov/gene/100758447", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758447", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758447", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G5S4", "url": "https://www.orthodb.org/?gene=A0A9J7G5S4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31767:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31767:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G5S4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAIGAQTQRLLGPKRPHRSFFESFIRTLIIVCTALAVVLSSVSICDGHWLLVEDRLFGLWYFCTISNHSEPHCMRDLSQAHMPGLAVGMGLARSVAALAVVAAIFGLELLMVSQVCEDVRSRRKWAIGSYLLLVAFILSSGGLLTFIILLKSQITLMGFTLMFWCEFTASFLFFLNATSGLHINSLTQPWNQLRKV", "length": 197, "header": "tr|A0A9J7G5S4-1|A0A9J7G5S4_CRIGR Isoform 1 of Voltage-dependent calcium channel gamma-like subunit isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem37 PE=4 SV=1 CANONICAL=A0A9J7G5S4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G5S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S4/entry#A0A9J7G5S4-1", "sequence": { "sequence": "MTAIGAQTQRLLGPKRPHRSFFESFIRTLIIVCTALAVVLSSVSICDGHWLLVEDRLFGLWYFCTISNHSEPHCMRDLSQAHMPGLAVGMGLARSVAALAVVAAIFGLELLMVSQVCEDVRSRRKWAIGSYLLLVAFILSSGGLLTFIILLKSQITLMGFTLMFWCEFTASFLFFLNATSGLHINSLTQPWNQLRKV", "length": 197, "header": "tr|A0A9J7G5S4-1|A0A9J7G5S4_CRIGR Isoform 1 of Voltage-dependent calcium channel gamma-like subunit isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem37 PE=4 SV=1 CANONICAL=A0A9J7G5S4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G5U3-1", "uniprot_ac": "A0A9J7G5U3", "uniprot_id": "A0A9J7G5U3_CRIGR", "mass": { "chemical_mass": 126254.0, "monoisotopic_mass": 126254.0 }, "refseq": { "ac": "XP_027273660", "name": "LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 2 isoform X9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273660" }, "gene_names": [ { "name": "Zcchc2", "type": "recommended", "evidence": [ { "id": "A0A9J7G5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U3" } ] }, { "name": "Zcchc2", "type": "synonym", "evidence": [ { "id": "XP_027273660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273660" } ] } ], "protein_names": [ { "name": "Zinc finger CCHC domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A9J7G5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U3/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 2 isoform X9", "type": "synonym", "evidence": [ { "id": "XP_027273660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273660" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273660" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zcchc2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5U3", "locus": {} } ], "crossref": [ { "id": "A0A9J7G5U3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G5U3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752516", "url": "https://www.ncbi.nlm.nih.gov/gene/100752516", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042793", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042793", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752516", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752516", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G5U3", "url": "https://www.orthodb.org/?gene=A0A9J7G5U3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46939", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46939", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46939:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46939:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25479", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25479", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26034", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26034", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273660", "url": 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"MLRMKLPPKSTHPSEPPPDAEEPEADARPGAKAPLRRRRDCRRRRAAAAAAHGPVAGPPPPPPPPPPPPPPPPPVVAARGLEPPVADGPTAGAGMPGGGGHAAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGSLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDAVLRSLRATRAEGSPGSVEDEPGGDGGQDAEKDGLGPEGGGGCAELGTEGGLGFRAQEELLLLFTMASLHPAFSFHQRVTLREHLERLRSALRVEPEDPEVEPCNFAGFRAQNDSACGDYIQSNETGLVEQAQIPQDGLTVAPHRAQREAVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKAILRALNQGSLKREERRHPDLEPILRQLFSTSSQAFLQSQKVRSFFQSLSSESQHSVNNLQSSLKTSKILEHLKEDSSEASSQEEDVLQHTIIHKKHGGKSPAVNSVGTSCSPLDGLTMQYAEQNGIVDWRNQGCAIIQHPEHCVTSADQHSAEKRSLSSVNKKKGKPQIEKEKIKKTENRLNSRINGVRLSAPQHAHGSTVKDMNLDIGSGHDTCGETSSESYSSPSSPRHDGRESLESEEEKDRDTDSNSEDSGNPSTARFTDYGSVNQTVTVKPPVQIVSLGNENGSLLEAPLTSHKYPHIPFMPTLHCVMHNGAQKSEVVIPSPKSADGKTIGMLVPNPMAISTVMESTNSSPVGILGPTASGESEKHLELLASPLPIPSSFLPHGGSPALQLTLQRLKLPPPQGSSESCTVNIPQQPTGSLSIGSPNTAFIPVHNPGSFPGSPVATTDPITKSASQVVGLNQMVPQIEGNTGTVPQPTNVKVVLPAAGLSAAQPPASYTFPGSPLAASVLPTQNSTSAQPTSAGISQAQSTVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYINAVGNTNANGTIVPPQQMGSGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFTLPSICNGSYLNQAHQSNGSQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGFGRLYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLPPSNDTLDSAD", 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"n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G5X1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5X1" }, { "id": "PF24181", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTI1 C-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 759, "end_pos": 1038, "start_aa": "Val", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G5X1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5X1" }, { "id": "PF24173", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24173" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTI1 N-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 11, 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274779" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764079", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637", "locus": {} } ], "crossref": [ { "id": "A0A9J7G637", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G637", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764079", "url": "https://www.ncbi.nlm.nih.gov/gene/100764079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764079", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764079", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G637", "url": "https://www.orthodb.org/?gene=A0A9J7G637", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16146:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16146:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027274779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274779", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G637-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMTQLGFLLFLIVATRGCTAAQENLDTNRWANPVSSSLFRSCKEIKQEMTGAQDGLYFLHTENGVIYQTFCDMTTAGGGWTLVASVHENNMYGKCTVGDRWSSQQGNRADSPEGDGNWANYNTFGSAEGATSDDYKNPGYYDIQAENLGIWHVPNNSPLQNWRNSSLLRYRTFSGFLQHLGHNLFGLYQRYPVKYGGGKCWTDNGPALPVVYDFGDAQKTASYYSPYGQKEFTAGFVQFRVFNNERAANALCAGMKVTGCNTEIHCIGGGGFFPEGNPRQCGDFSAFDWNGYGTHVAYSSSREITEAAVLLFYR", "length": 315, "header": "tr|A0A9J7G637-1|A0A9J7G637_CRIGR Isoform 1 of Intelectin-1a OS=Cricetulus griseus OX=10029 GN=LOC100764079 PE=4 SV=1 CANONICAL=A0A9J7G637-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G637-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637/entry#A0A9J7G637-1", "sequence": { "sequence": "MTMTQLGFLLFLIVATRGCTAAQENLDTNRWANPVSSSLFRSCKEIKQEMTGAQDGLYFLHTENGVIYQTFCDMTTAGGGWTLVASVHENNMYGKCTVGDRWSSQQGNRADSPEGDGNWANYNTFGSAEGATSDDYKNPGYYDIQAENLGIWHVPNNSPLQNWRNSSLLRYRTFSGFLQHLGHNLFGLYQRYPVKYGGGKCWTDNGPALPVVYDFGDAQKTASYYSPYGQKEFTAGFVQFRVFNNERAANALCAGMKVTGCNTEIHCIGGGGFFPEGNPRQCGDFSAFDWNGYGTHVAYSSSREITEAAVLLFYR", "length": 315, "header": "tr|A0A9J7G637-1|A0A9J7G637_CRIGR Isoform 1 of Intelectin-1a OS=Cricetulus griseus OX=10029 GN=LOC100764079 PE=4 SV=1 CANONICAL=A0A9J7G637-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7G637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to nematode", "id": "GO:0009624", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009624", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G637" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"A0A9J7G665-1", "uniprot_ac": "A0A9J7G665", "uniprot_id": "A0A9J7G665_CRIGR", "mass": { "chemical_mass": 31967.0, "monoisotopic_mass": 31967.0 }, "refseq": { "ac": "XP_027274835", "name": "uncharacterized protein LOC113836103", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274835" }, "gene_names": [ { "name": "LOC113836103", "type": "recommended", "evidence": [ { "id": "A0A9J7G665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665" } ] }, { "name": "LOC113836103", "type": "synonym", "evidence": [ { "id": "XP_027274835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274835" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113836103", "type": "synonym", "evidence": [ { "id": "A0A9J7G665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113836103", "type": "synonym", "evidence": [ { "id": "XP_027274835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274835" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 25% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274835" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G665", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836103", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665", "locus": {} } ], "crossref": [ { "id": "A0A9J7G665", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G665", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836103", "url": "https://www.ncbi.nlm.nih.gov/gene/113836103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836103", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836103", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027274835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G665", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G665-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRPSEEAAGRQPCTRELALTSCTLDMDSQTLGLERWLVTPNSWITSHSRESRACAYRSWSLSRVLGALCHRLPGTGLLRVWGHKGCGRRPGRAHRPRLRAGTLVQVHARGSRAPGAQRTQASERASGAGCWVCQPEGQRREAVLALAAVLRGHSAGWGTASCSRAARGRRKPSPEAGTESGTPLTARAGPAAAPLRQARPTFQRALSEARLRHPRDTPATSARPSRGAGLVTHAVGPQAACTGARRSPCLILAVRCRGRVSPHCRPTVGQSGSCPNWVCGPRLFRGKQVLESSLVGET", "length": 299, "header": "tr|A0A9J7G665-1|A0A9J7G665_CRIGR Isoform 1 of Uncharacterized protein LOC113836103 OS=Cricetulus griseus OX=10029 GN=LOC113836103 PE=4 SV=1 CANONICAL=A0A9J7G665-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G665-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G665/entry#A0A9J7G665-1", "sequence": { "sequence": "MKRPSEEAAGRQPCTRELALTSCTLDMDSQTLGLERWLVTPNSWITSHSRESRACAYRSWSLSRVLGALCHRLPGTGLLRVWGHKGCGRRPGRAHRPRLRAGTLVQVHARGSRAPGAQRTQASERASGAGCWVCQPEGQRREAVLALAAVLRGHSAGWGTASCSRAARGRRKPSPEAGTESGTPLTARAGPAAAPLRQARPTFQRALSEARLRHPRDTPATSARPSRGAGLVTHAVGPQAACTGARRSPCLILAVRCRGRVSPHCRPTVGQSGSCPNWVCGPRLFRGKQVLESSLVGET", "length": 299, "header": "tr|A0A9J7G665-1|A0A9J7G665_CRIGR Isoform 1 of Uncharacterized protein LOC113836103 OS=Cricetulus griseus OX=10029 GN=LOC113836103 PE=4 SV=1 CANONICAL=A0A9J7G665-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"id": "A0A9J7G6D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6D3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6D3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6D3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6D3" } ], "pmid": "" }, { 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REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614219.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506290" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep152", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5", "locus": {} } ], "crossref": [ { "id": "100760797", "url": "https://www.ncbi.nlm.nih.gov/gene/100760797", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051235", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSGTQSNRE", "length": 1415, "header": "tr|A0A9J7G6H0-1|A0A9J7G6U5_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7G6Q2-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSDVDRIHSDAHQLNEERLIPWRKLEVKFSQQRLTNTFFSFNALL", "length": 1451, "header": "tr|A0A9J7G6Q2-1|A0A9J7G6Q2_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X8 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7G6U5-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSVAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1743, "header": "tr|A0A9J7G6U5-1|A0A9J7G6U5_CRIGR Isoform 1 of Centrosomal protein of 152 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7G6Z5-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEDSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSVAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1742, "header": "tr|A0A9J7G6Z5-1|A0A9J7G6Z5_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G703-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7G703-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSVAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1688, "header": "tr|A0A9J7G703-1|A0A9J7G703_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X4 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7JLS2-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETEVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSVAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1649, "header": "tr|A0A9J7JLS2-1|A0A9J7JLS2_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X5 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JS68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7JS68-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1742, "header": "tr|A0A9J7JS68-1|A0A9J7JS68_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X3 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7JTY0-1", "sequence": { "sequence": "MSLEFGSVALQTQNEDEEFDKEDYEREKELQQLLTDLPHDMLDDDLLSSPEHHDSDCSVDGIAGGLHPSEQLERKWIEGDILPKSHIVNCGNGWEENRSKTEDQHLGYHPGEVGDEGGSGYSPPSKHEPADLYHLPEDFRPYTGGQKQEFHKQTAGVITFSDPQRDKFQQFGSSQGPSCQALEPYKAIYKPYQSSGQRASSPAQEIASTDMFEGLQQQFLGANEADSAENIHIIQLQVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSADVERVLPTDVDRIHSDAHQLNEERLIPWRKLEVKFSQQRLTNTFFSFNALL", "length": 1460, "header": "tr|A0A9J7JTY0-1|A0A9J7JTY0_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X7 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5/entry#A0A9J7JVC5-1", "sequence": { "sequence": "MKVLNKAKERQLDSLVEKLNDSERQIRYLNHQLLIIQDEKNGLTLSLRESQKLFQNGKEREIQLEAQIKALEAQIQAFKVSEEKLTKKARTTEMTLENLKQQLVELHHSESLQRAREQHENIVSGLTQKYEEQVLSLQKNLDATRAALQEQENLCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSMQEVTQLQLQLQQAQKAHILSESMNKALQEELAELKDEISLYESAAELGVLSGDSEGDLSIELTESCVDLGIKKVNWKQSKANSTAQQEAPKEELSKDEVILKLKAQVQRLLNSNSVKRHLVSQLQSELRDCRGTTEALQQPKDGDKGMETKTDTSEKTTDQLWLDSSEAIVRDDILRLKNEVQGLQQQNQELKEAEEKLRRTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHTVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDELESALRKTMEKAQEQKRQLLEDREEYVGKLKLELEEKYQETLKVEKQNWLKEQEAAVKEQVETESRQKLIQHMEKELQSKLNHSVKSLRKETSDCGSQTDQVALADTVSKAEAAVLAEEQVRKVQQELEQEKEVAVKEALRKLEVDLELKYYENITQKVEIAVQNARSRWLQELPKLAEYKALLRVQEQEWAEQQELAVTQRLSLALSEAKKKWRSELENMKPNVTAVKELEEKIHSLQKELELKDAEIPVVVRAELAKARTEWNREKQEEIHKIQEQNEEDYRQFLDDHRNKIKEVLEAAKEDFMKQNTELLLQKETEFQACLDQSRREWTLQEAKRTQLEIHQYEKDILTVLEFLLRDNQKEYAGDSQDRQLLEVMSVCSSKWISVQYFEKVKSCIQKALQDMLPLLTDTVASEREKRNVVKTSAGPVSWKTGQGDPGVAAPLPVSISGRCALPEAEVETDRNIFEIKDLCCGHCFQELEKENQECQDLKRKLEKFCRHLQHLERTHKAAVEKLGELNSRVIEELIEENNDMKNKLEALRAHCRSPPRSLSEGAIDNALLPCSRQALEELRGQYIKAVKKIKRDMLRYIHESKERAAEMVKAEVLRERQETARKMRKYYLTCLQQILQDNGKEEGAEKKIMNAASKLATMAELLGTIAESDCKVRCAQAGHSVAFPLTSEMLMDVEKSERSGVNQNIPNYIESKPNVGKTIPKSMCEQVPRRRTVSHLQRRLEDSEHREIKPVASSASPSNYQCGEGSCRPPDILAKNVAPEFVPHRGEGGFDLHKKKDPPSGAGSEPLPYSATPFLGSAEKKSSPRCISGSIHTSLRGPSEVPRLKAAMCDSLTETESPKSEKSQGVDTQDPPVKDGGVPGGSPGPVPDSTSPRGSRAVLFLAERSQRTWEMQGDSVQLKHFSAAPCLPDAQESNMACWGGYTPDLPRETLHSQPGRMGVTRGQSSQLSPDVLKPDLRKLSGTGPSSVCQKPSRKLAAPPTSQQDSGFDSPFANLN", "length": 1508, "header": "tr|A0A9J7JVC5-1|A0A9J7JVC5_CRIGR Computationally mapped isoform of Centrosomal protein of 152 kDa isoform X6 OS=Cricetulus griseus OX=10029 GN=Cep152 PE=4 SV=1 CANONICAL=A0A9J7G6U5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6H0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6H0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760797", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760797", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 816, "end_pos": 818, "annotation": "n_glycosylation_sequon" }, { "start_pos": 888, "end_pos": 890, "annotation": "n_glycosylation_sequon" }, { "start_pos": 958, "end_pos": 960, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G6U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6U5" }, { "id": "PF25770", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25770" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CEP152 CEP63 binding coiled coil", "eco_id": "ECO_0000259", "start_pos": 1303, "end_pos": 1353, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 255, "end_pos": 257 }, { "start_pos": 520, "end_pos": 522 }, { "start_pos": 816, "end_pos": 818 }, { "start_pos": 888, "end_pos": 890 }, { "start_pos": 958, "end_pos": 960 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_ac": "A0A9J7G6N9", "uniprot_id": "A0A9J7G6N9_CRIGR", "mass": { "chemical_mass": 23685.0, "monoisotopic_mass": 23685.0 }, "refseq": { "ac": "XP_007652354", "name": "protein FAM227B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652354" }, "gene_names": [ { "name": "LOC113830664", "type": "recommended", "evidence": [ { "id": "A0A9J7G6N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6N9" } ] }, { "name": "LOC113830664", "type": "synonym", "evidence": [ { "id": "XP_007652354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652354" } ] } ], "protein_names": [ { "name": "Protein FAM227B", "type": "synonym", "evidence": [ { "id": "A0A9J7G6N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6N9/entry#names_and_taxonomy" } ] }, { "name": "protein FAM227B", "type": "synonym", "evidence": [ { "id": "XP_007652354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652354" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616222.1) annotated using gene prediction method: Gnomon. 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pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277573" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C6H20orf194", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G6Q7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G6Q7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774555", "url": "https://www.ncbi.nlm.nih.gov/gene/100774555", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040342", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040342", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056498", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056498", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774555", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774555", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G6Q7", "url": "https://www.orthodb.org/?gene=A0A9J7G6Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33664", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33664", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33664:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33664:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23319", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23319", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25203", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25203", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25204", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25204", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277573", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G6Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLM6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSFAPQQPGLPRARFAGTSGRGAASVSCSRLRQVQNIMTQSSKSQPDGILCILGIDSRYNEGCRELANYLLFGLYSQNTTDFEKTGFSEEILDDVIILIKSDSVHLYCNPVNYQYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKISSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYQLQDVSLSLWNVYSRMDPVSLENMLSEDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPHRQPFVLFGNHSTRDNLSAGSFNFPSEGHLVRNTGPAGSFAKHMVAQCVSPKGPLACSRTYFFGATHVPYLGDDDKLPRTTEQIRLLSQIYAAVIEAVLAGIACYAKTYSLAKAKEVAEHTLESGLVVTELAPFKADLRSKVAFHIHAVNNQGRIVPLDNEDSLSFVKTACMTIYDIPDLLGRGGGCLGSVVFSESFLTSRILVREKGGTITPETSYIILTAAIPRFSSWLVEDNEIKLSEKALQATRGDECFLGTLLTGGKGAYLYSSSPQSGPEEGNVHFFSGGLLFSHRHHGSIVISKDHMNSVSFYDGDSTSIVAALLINFRGSLLPHLPVQFHGSSNFLMIALFPKSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSVEQKRLHSWAQKLFSALSYPAEEWSSPKLLSAKLPELERFLHHFAVGSVGQEPVMRTHLPGLLQQAEISPAHGLESDKVIISIIAGLPGCHANKLCAFLVTLHKEYGRWMVYRQIMDSSECFHAAHFQKYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQALQAHPDPNVKSYFTIGAVTVCVEPLSCNMEHRFLFPKCLDQCSQGLVNNVVFTSHTAEQRHPLLVQLQTLIRATNPTAAFILAENGIVTRNEDIELILSENSFSNPQMLHSRYLMFPGWYEGKFDSGSVFPLMVQICVWFDRPLERTRFVTKCKAIQSSIKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTLTNSLSIMPVLEGPTPPPNSRSTPQDSGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQRKALKTRGMLTQQEIKTIHVKRHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIERYNRELEQQEYRDLFEQKP", "length": 1176, "header": "tr|A0A9J7G6Q7-1|A0A9J7G6Q7_CRIGR Isoform 1 of Uncharacterized protein C20orf194 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C6H20orf194 PE=4 SV=1 CANONICAL=A0A9J7G6Q7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G6Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7/entry#A0A9J7G6Q7-1", "sequence": { "sequence": "MDSFAPQQPGLPRARFAGTSGRGAASVSCSRLRQVQNIMTQSSKSQPDGILCILGIDSRYNEGCRELANYLLFGLYSQNTTDFEKTGFSEEILDDVIILIKSDSVHLYCNPVNYQYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKISSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYQLQDVSLSLWNVYSRMDPVSLENMLSEDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPHRQPFVLFGNHSTRDNLSAGSFNFPSEGHLVRNTGPAGSFAKHMVAQCVSPKGPLACSRTYFFGATHVPYLGDDDKLPRTTEQIRLLSQIYAAVIEAVLAGIACYAKTYSLAKAKEVAEHTLESGLVVTELAPFKADLRSKVAFHIHAVNNQGRIVPLDNEDSLSFVKTACMTIYDIPDLLGRGGGCLGSVVFSESFLTSRILVREKGGTITPETSYIILTAAIPRFSSWLVEDNEIKLSEKALQATRGDECFLGTLLTGGKGAYLYSSSPQSGPEEGNVHFFSGGLLFSHRHHGSIVISKDHMNSVSFYDGDSTSIVAALLINFRGSLLPHLPVQFHGSSNFLMIALFPKSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSVEQKRLHSWAQKLFSALSYPAEEWSSPKLLSAKLPELERFLHHFAVGSVGQEPVMRTHLPGLLQQAEISPAHGLESDKVIISIIAGLPGCHANKLCAFLVTLHKEYGRWMVYRQIMDSSECFHAAHFQKYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQALQAHPDPNVKSYFTIGAVTVCVEPLSCNMEHRFLFPKCLDQCSQGLVNNVVFTSHTAEQRHPLLVQLQTLIRATNPTAAFILAENGIVTRNEDIELILSENSFSNPQMLHSRYLMFPGWYEGKFDSGSVFPLMVQICVWFDRPLERTRFVTKCKAIQSSIKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTLTNSLSIMPVLEGPTPPPNSRSTPQDSGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQRKALKTRGMLTQQEIKTIHVKRHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIERYNRELEQQEYRDLFEQKP", "length": 1176, "header": "tr|A0A9J7G6Q7-1|A0A9J7G6Q7_CRIGR Isoform 1 of Uncharacterized protein C20orf194 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C6H20orf194 PE=4 SV=1 CANONICAL=A0A9J7G6Q7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7/entry#A0A9J7JLM6-1", "sequence": { "sequence": "MDSFAPQQPGLPRARFAGTSGRGAASVSCSRLRQVQNIMTQSSKSQPDGILCILGIDSRYNEGCRELANYLLFGLYSQNTTDFEKTGFSEEILDDVIILIKSDSVHLYCNPVNYQYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKISSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYQLQDVSLSLWNVYSRMDPVSLENMLSEDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPHRQPFVLFGNHSTRDNLSAGSFNFPSEGHLVRNTGPAGSFAKHMVAQCVSPKGPLACSRTYFFGATHVPYLGDDDKLPRTTEQMLLSQIYAAVIEAVLAGIACYAKTYSLAKAKEVAEHTLESGLVVTELAPFKADLRSKVAFHIHAVNNQGRIVPLDNEDSLSFVKTACMTIYDIPDLLGRGGGCLGSVVFSESFLTSRILVREKGGTITPETSYIILTAAIPRFSSWLVEDNEIKLSEKALQATRGDECFLGTLLTGGKGAYLYSSSPQSGPEEGNVHFFSGGLLFSHRHHGSIVISKDHMNSVSFYDGDSTSIVAALLINFRGSLLPHLPVQFHGSSNFLMIALFPKSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSVEQKRLHSWAQKLFSALSYPAEEWSSPKLLSAKLPELERFLHHFAVGSVGQEPVMRTHLPGLLQQAEISPAHGLESDKVIISIIAGLPGCHANKLCAFLVTLHKEYGRWMVYRQIMDSSECFHAAHFQKYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQALQAHPDPNVKSYFTIGAVTVCVEPLSCNMEHRFLFPKCLDQCSQGLVNNVVFTSHTAEQRHPLLVQLQTLIRATNPTAAFILAENGIVTRNEDIELILSENSFSNPQMLHSRYLMFPGWYEGKFDSGSVFPLMVQICVWFDRPLERTRFVTKCKAIQSSIKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTLTNSLSIMPVLEGPTPPPNSRSTPQDSGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQRKALKTRGMLTQQEIKTIHVKRHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIERYNRELEQQEYRDLFEQKP", "length": 1175, "header": "tr|A0A9J7JLM6-1|A0A9J7JLM6_CRIGR Computationally mapped isoform of Uncharacterized protein C20orf194 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C6H20orf194 PE=4 SV=1 CANONICAL=A0A9J7G6Q7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7/entry#A0A9J7JV71-1", "sequence": { "sequence": "MTENEYEDEEAAEEFKISSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYQLQDVSLSLWNVYSRMDPVSLENMLSEDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPHRQPFVLFGNHSTRDNLSAGSFNFPSEGHLVRNTGPAGSFAKHMVAQCVSPKGPLACSRTYFFGATHVPYLGDDDKLPRTTEQIRLLSQIYAAVIEAVLAGIACYAKTYSLAKAKEVAEHTLESGLVVTELAPFKADLRSKVAFHIHAVNNQGRIVPLDNEDSLSFVKTACMTIYDIPDLLGRGGGCLGSVVFSESFLTSRILVREKGGTITPETSYIILTAAIPRFSSWLVEDNEIKLSEKALQATRGDECFLGTLLTGGKGAYLYSSSPQSGPEEGNVHFFSGGLLFSHRHHGSIVISKDHMNSVSFYDGDSTSIVAALLINFRGSLLPHLPVQFHGSSNFLMIALFPKSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSVEQKRLHSWAQKLFSALSYPAEEWSSPKLLSAKLPELERFLHHFAVGSVGQEPVMRTHLPGLLQQAEISPAHGLESDKVIISIIAGLPGCHANKLCAFLVTLHKEYGRWMVYRQIMDSSECFHAAHFQKYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQALQAHPDPNVKSYFTIGAVTVCVEPLSCNMEHRFLFPKCLDQCSQGLVNNVVFTSHTAEQRHPLLVQLQTLIRATNPTAAFILAENGIVTRNEDIELILSENSFSNPQMLHSRYLMFPGWYEGKFDSGSVFPLMVQICVWFDRPLERTRFVTKCKAIQSSIKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTLTNSLSIMPVLEGPTPPPNSRSTPQDSGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQRKALKTRGMLTQQEIKTIHVKRHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIERYNRELEQQEYRDLFEQKP", "length": 1045, "header": "tr|A0A9J7JV71-1|A0A9J7JV71_CRIGR Computationally mapped isoform of Uncharacterized protein C20orf194 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=C6H20orf194 PE=4 SV=1 CANONICAL=A0A9J7G6Q7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1045, "start_aa": "Thr", "end_pos": 1045, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1045", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G6Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774555", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774555", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1123, "end_pos": 1125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 808, "end_pos": 810, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G6Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" }, { "id": "PF25204", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25204" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9", "eco_id": "ECO_0000259", "start_pos": 749, "end_pos": 958, "start_aa": "Ile", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G6Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" }, { "id": "PF23319", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23319" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9 CobW C-like", "eco_id": "ECO_0000259", "start_pos": 974, "end_pos": 1039, "start_aa": "Gln", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G6Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" }, { "id": "PF23281", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23281" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9 N-terminal", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 217, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G6Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" }, { "id": "PF26246", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26246" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9 PH", "eco_id": "ECO_0000259", "start_pos": 517, "end_pos": 720, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G6Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6Q7" }, { "id": "PF25203", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25203" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9 pita-bread-like", "eco_id": "ECO_0000259", "start_pos": 220, "end_pos": 501, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1045 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1123, "end_pos": 1125 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 808, "end_pos": 810 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 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This record is derived from a genomic sequence (NW_003613646.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016820676", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820676" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH11orf94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728", "locus": {} } ], "crossref": [ { "id": "A0A9J7G728", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G728", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750351", "url": "https://www.ncbi.nlm.nih.gov/gene/100750351", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750351", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750351", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G728", "url": "https://www.orthodb.org/?gene=A0A9J7G728", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37872", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37872", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37872:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37872:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016820676", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016820676", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G728-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSPGTNTLCEVALRIGTRFCPAGGGAGRSHSTDCVGNGSRHAGGSVPQGWAQYLPFLPHPGRRTPSTSAPEVRPDPSGPRRLWKRLTIILGRVRLLSLHPGLPPQRKVAMSFGVRAQPSNISHRSQRSVPEEFSAPLELSQPLSGLMDDYGIRPKHPWPRGPRPLLSQAQQRKRDGPNMADYYYDVNL", "length": 189, "header": "tr|A0A9J7G728-1|A0A9J7G728_CRIGR Isoform 1 of Uncharacterized protein C11orf94 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH11orf94 PE=4 SV=1 CANONICAL=A0A9J7G728-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G728-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728/entry#A0A9J7G728-1", "sequence": { "sequence": "MLSPGTNTLCEVALRIGTRFCPAGGGAGRSHSTDCVGNGSRHAGGSVPQGWAQYLPFLPHPGRRTPSTSAPEVRPDPSGPRRLWKRLTIILGRVRLLSLHPGLPPQRKVAMSFGVRAQPSNISHRSQRSVPEEFSAPLELSQPLSGLMDDYGIRPKHPWPRGPRPLLSQAQQRKRDGPNMADYYYDVNL", "length": 189, "header": "tr|A0A9J7G728-1|A0A9J7G728_CRIGR Isoform 1 of Uncharacterized protein C11orf94 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH11orf94 PE=4 SV=1 CANONICAL=A0A9J7G728-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750351", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750351", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "sperm-egg recognition", "id": "GO:0035036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035036", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "pmid": "" }, { "name": "fusion of sperm to egg plasma membrane involved in single fertilization", "id": "GO:0007342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007342", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G728", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G728" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 38, "end_pos": 40 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G734-1", "uniprot_ac": "A0A9J7G734", "uniprot_id": "A0A9J7G734_CRIGR", "mass": { "chemical_mass": 196423.0, "monoisotopic_mass": 196423.0 }, "refseq": { "ac": "XP_027277836", "name": "LOW QUALITY PROTEIN: stereocilin isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277836" }, "gene_names": [ { "name": "Strc", "type": "recommended", "evidence": [ { "id": "A0A9J7G734", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734" } ] }, { "name": "Strc", "type": "synonym", "evidence": [ { "id": "XP_027277836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277836" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: stereocilin isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027277836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277836" }, { "id": "A0A9J7G734", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277836" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G734", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Strc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734", "locus": {} } ], "crossref": [ { "id": "100767154", "url": "https://www.ncbi.nlm.nih.gov/gene/100767154", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767154", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767154", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G734", "url": "https://www.orthodb.org/?gene=A0A9J7G734", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21058", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21058", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277836", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G734", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G734-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G734-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSRWPLLLLLLLSHKVKLAPTGPQSSDSGLSLLKSFISTLDQAPQRSLSQSRFSAFLANISSSFELGRMGEGPVGEPPPLPPPALRLHDFLVTLRGSPDWEPMLGLLGDVLALLGQEQTPRDFLVHQAGVLGGLVEVLLGALVPGGPPAPTRPPCTRDGPSDCVLAADWLPSLMLLLEGTRWQALVQLQPSVEPTNATGLDGREPAPHFLQGLLGLLTPTGDLGSEEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSIMGQPEPDANGKCQGGNLQQLLLWGMRNNLSWDAQALGFLSGSPPPPPALLHCLSTGVPLPRASQPAAHISPRQRRAISVEALCENHSGPEPPYSISNFSIYLLCQHIKPATPQPPPVTPQPPSATSQPPPATPHPXQPPPATPQPPPATPQPPPSTAVICQTAVWYAVSWAPRAKGWLQACHDQFPDQFLDMICGNLSFSALSGPNRRLVKQLCAGLLPPPTSCPKGLVPVPLTPDIFWGCFLENDTLWAERLCVEESLQAVPPRNQAWVQHVCQGPTLDPTDFPPCHVGPCGERCPDGGSFLLMVCANDTMYEALVPFWAWLAGQCRISRGGNDTCFLEGMLGPLLPSLPPLGPSPLCLAPGPFLLGMLSQLPRCQSSVPALAHPTRLHYLLRLLTFLLGPGAGGAETQGMLGQALLLSSLPDNCSFWDTFRPEGRRSVLRTVGEYLEREKPAPQGLESTVSLSSSMSKMELLSCFSPVLWDLLQRERSVWALKILVQAYLHMPPEDLQQLVLSAEMEAAQGFLTLMHRSWAQLKVPPSEEQAMGRLTALLLQRYPHLTSQLFIDLSPLIPFLAVPDLMRFPPSLLANDSVLAAIRDHSSGMKPEQKEALAKRLLAPELFGEVPDWPQELLWAVLPLLPHLPLENFLQLSPHQIQALEDSWPVAGLGPGHARHVLRSLVNQSMEDGEEQVRRLGSLACFLSPEELQSLVPLSDPMGPVEQGLLECAANGTLRPEGRVAYELLGVLRSSGGTVLSPRELRVWAPLFPQLGLRFLQELSEPQLRAMLPALQGASVTPAQAVLLFGRLLPRQDLSLEELCSLHPLLPGLSPQTLQAIPKRVLVGACSCLGPELSRLSACQTAALLQTFRAKDGFKNVGATGAGTTVCIPGQPIPTTWPDCLLPLLPLKLLQLDTAVLLANRRRYRQLPWSEQQAQFLWKKMQVPTNLTLRNLQALGNLAGGMSCEFLQQISSMVDFVAVVHMLYQLPTGVRGSLRACIWAELQRRVTMPEPEPELTTLGPELSELDTKLLLDLPIQLMDRLSSDSIMLVVELVQGAPEQLLTLTPPHQAALAERALKNLAPKETPISEEVLDALGPLVGFLGRESTRRIPLPILLSRLSQLQGFCLGETFATELGRLLLQEPVLGRPESWSQDEVEQAGRLVFTLSTEAISLIPREALGPETLERLLEKQQSWEQSRVGHLCGGPQLAHKKAALVAGIVQPAAEGLQEPIPNCADIRGTFPAAWSATQITEMELSDFEDCLSLFAGDPGLGPEELRAAMGKAKQLWGAPRGFRPEQILQLGRLLRGLGERELQELTLVDWGVLSSLGQIDGWSAVQLRAVVSSFLRQSGRHVSHLDFIYLTALGHTLCGLRPEELQHISSWEFSQAALFLGNLHLPCSEEQLEVLAYLLVLPGGFGPVSNWGPEIFTEIGTIAAGIADLALSALLPEQIQGLTPLAISVIPAPKFAVVFNPIQLSSFTSVQAVAITPEQMAYLSPEQRQAVAWAQHEGKEIPEQWGRSAAWGLYDWFQSSWALALTISFVDHLL", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G795-1", "uniprot_ac": "A0A9J7G795", "uniprot_id": "A0A9J7G795_CRIGR", "mass": { "chemical_mass": 70349.0, "monoisotopic_mass": 70349.0 }, "refseq": { "ac": "XP_027276676", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276676" }, "gene_names": [ { "name": "LOC113836328", "type": "recommended", "evidence": [ { "id": "A0A9J7G795", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G795" } ] }, { "name": "LOC113836328", "type": "synonym", "evidence": [ { "id": "XP_027276676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276676" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027276676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276676" }, { "id": "A0A9J7G795", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G795/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276676", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276676" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G795", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G795" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836328", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G795", "locus": {} } ], "crossref": [ { "id": "A0A9J7G795", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G795", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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"MFQTLCLMLMTAAAAGRQPHTPTPRRWVIINLSTGDVAADNTSIDFPFGKWFPDLYVDLCDIVDRWTNPSGWGCNSPWGKAATRQTRFYVCPGHSLSRHLTAQCGGPQDGYCASWSCVSTGHIWWTAPVTTDFITVGPYNRSTPGTYRCGGQSSGPCYDSNHSPHTKDATEGGRCNLLKISFTELGKQQTDWTGGKIWGLRLYVSGVDPATTFMIQLQRIDPPSKPVGPNPVLPDRGIKTLPKPAQTPAQSSTPKLTPITPSISPDPGTIDRLFNLVQGAYLALNASSPNSTRDCWLCLSAEPPYYEGIAFMASTSNITSPSARCRAVPHQLTLPGVSGQGLCLGKVPSSYTQFCNKTIIPYIGSYYLEAPNGTYWACNTGLTPCIFALSLDVSHEYCILVQLWPQIKYYSGEILVSQAQRRVLREPVSMTIALMLGIGGLVAGIGTGTAALVQNNQLLQLQIAMNTDLEAIERSISALEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALREECCFYADHTGIVKESMEILRERLAKRKREFEKQKGWFSNLLQGSPWLSTLLPTIIAPLIVFLLLLCFGPWALQWLTQLIKRQIDSALPKSISVHYHKLVAADPGEERGSQQELRFSNQGLRFNNSTC", "length": 640, "header": "tr|A0A9J7G795-1|A0A9J7G795_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113836328 PE=4 SV=1 CANONICAL=A0A9J7G795-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G795-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G795/entry#A0A9J7G795-1", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278457", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278457", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRGLPLYLATLLTGLLECIGFAGVLFGWTSLLFVFKKEGYFAEPCQQNCSNSSNATGPPAQDEKFSLIFTLASFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTCATLIIAFTSADSALLLFLAMPMLAVGGILFLITNLQIGNLFGKHRSTIITLYNGAFDSSSVVFLIIKLLHERDISLRASFLFLSVCSVWHVGRTFFLMPRGHIPYPLPPNYSYGLCSRFGTKKEEKKTTECEIKELQSKEFLSPKEENSGPGQLQEQEQQQQQQQQQQQQQQQQQQQQQQQQCSFRSCVLSRRFVLHVVWLSTIQLWHYLFIGTLNSLLNRLADNDSVQVSAFTNAFAITQFFGVLCAPWNGLLMDRLKQKYQKEAKKTGSSSSAVALCSTVPSLALTSLLCLGFILCASIPVIQLQYATFILQVISRSFLYGCNAAFLTLAFPSEHFGKLFGLVMALSAIVSLLQFPLFKLSPQNIAVYVSMGLAILLTLAHPLLVYRECRTEKTKPSVTP", "length": 509, "header": "tr|A0A9J7G7Y1-1|A0A9J7G7Y1_CRIGR Isoform 1 of Solute carrier family 43 member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc43a3 PE=4 SV=1 CANONICAL=A0A9J7G7Y1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Y1/entry#A0A9J7G7A6-1", "sequence": { "sequence": 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"id": "XP_003497505", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497505" } ] } ], "protein_names": [ { "name": "COMM domain-containing protein 9", "type": "synonym", "evidence": [ { "id": "XP_003497505", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497505" }, { "id": "A0A9J7G7B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613649.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003497505.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497505", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497505" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Commd9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7B9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7B9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04757", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04757", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753103", "url": "https://www.ncbi.nlm.nih.gov/gene/100753103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048676", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048676", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753103", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753103", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G7B9", "url": "https://www.orthodb.org/?gene=A0A9J7G7B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15663:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15663:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497505", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497505", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRWVSCGMSGLLPLSRDTGKMAALTAENFEALQSLLKASSKDVVRQLCQESFSSSALDSKKLLDVTCSSLSVTQEEAEQLLQALHRFTRLVAFRDLSSAESILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTMELSKETLDTMLDGLGRIRDQLSAVANK", "length": 219, "header": "tr|A0A9J7G7B9-1|A0A9J7G7B9_CRIGR Isoform 1 of COMM domain-containing protein 9 OS=Cricetulus griseus OX=10029 GN=Commd9 PE=4 SV=1 CANONICAL=A0A9J7G7B9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7B9/entry#A0A9J7G7B9-1", "sequence": { "sequence": "MSRWVSCGMSGLLPLSRDTGKMAALTAENFEALQSLLKASSKDVVRQLCQESFSSSALDSKKLLDVTCSSLSVTQEEAEQLLQALHRFTRLVAFRDLSSAESILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTMELSKETLDTMLDGLGRIRDQLSAVANK", "length": 219, "header": "tr|A0A9J7G7B9-1|A0A9J7G7B9_CRIGR Isoform 1 of COMM domain-containing protein 9 OS=Cricetulus griseus OX=10029 GN=Commd9 PE=4 SV=1 CANONICAL=A0A9J7G7B9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027276749.1. 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} ] }, { "uniprot_canonical_ac": "A0A9J7G7E7-1", "uniprot_ac": "A0A9J7G7E7", "uniprot_id": "A0A9J7G7E7_CRIGR", "mass": { "chemical_mass": 15598.0, "monoisotopic_mass": 15598.0 }, "refseq": { "ac": "XP_003509926", "name": "cystatin-14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509926" }, "gene_names": [ { "name": "LOC100765948", "type": "recommended", "evidence": [ { "id": "A0A9J7G7E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E7" } ] }, { "name": "LOC100765948", "type": "synonym", "evidence": [ { "id": "XP_003509926", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509926" } ] } ], "protein_names": [ { "name": "Cystatin-14", "type": "synonym", "evidence": [ { "id": "A0A9J7G7E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E7/entry#names_and_taxonomy" } ] }, { "name": "cystatin-14", "type": "synonym", "evidence": [ { "id": "XP_003509926", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NW_003614789.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003509926.1. 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is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278308", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278308" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7I2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf408", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7I2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7I2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754652", "url": "https://www.ncbi.nlm.nih.gov/gene/100754652", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001214", 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CANONICAL=A0A9J7G7I2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7I2/entry#A0A9J7G7I2-1", "sequence": { "sequence": "MKEAEEVLLGKTLPLPPKPILGQESGWSLSGGGFAQGLKDFPPGSSPVILALKTLPQGLALGPSSARKQHLGVWCVGEPLQLGLHWGPLEVDSFSEEKGEGVKPPREQDLSLGWWGAICTSKQSSAWISLVQQGRLQSDGNVSLVWINEELHLQVYQIVLPGSELLLCPQSPSKILRVMHPRLKEEAAVVVVAEEESAIQEEVASPREDAAESCTDPGHESPHSIQEENTIGSGPMAQNQPFKDSQLLGPLLQDDSMDKEFLPQTPPEPQGNSAAQKSTKSNEASLLTPRRTQVQTCPAKNLHVPSNECLSTVKISEPRTQLPNLPVLLCSPPDPEESSSKQGRRYQCGECGKAFLQLCHLKKHAFVHKDHKPFLCTECGKSYSSEESFKAHMLGHRGVRPFPCSQCDKAYGTRRDLKEHQVVHSGARPFVCEQCGKAFARRPSLRLHRKTHQMPDAPSPCLCPCPVCGRLLATQGSLQNHMRLHTGEKPFLCPHCGRAFRQRGNLRGHLRLHTGERPYQCPHCASTFPQLPELRRHLISHTGEAYLCPVCGKALRDPHTLRAHERLHSGERPFLCLQCGRAYTLATKLRRHLKSHMTDKPYRCPVCGMGYGFPQSLKRHQLSHQHGVSSSPSLPPAASEPTMVLLQSEPKLLDTCSQQEVPSDGGIVEVTISENQGKCFVVPEEPTPRPNLVLIHKDMGFNGWAEVVQVEAGT", "length": 714, "header": "tr|A0A9J7G7I2-1|A0A9J7G7I2_CRIGR Isoform 1 of Zinc finger protein 408 OS=Cricetulus 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016836445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836445" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gfi1b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7Q7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7Q7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767332", "url": "https://www.ncbi.nlm.nih.gov/gene/100767332", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767332", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767332", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECPVPQG", "url": "https://omabrowser.org/oma/group/ECPVPQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G7Q7", "url": "https://www.orthodb.org/?gene=A0A9J7G7Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016836445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016836445", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSFLVKSKKAHTYHQPRAQDDDLVWPPAVIPVVKEHILSSSPVLGTLLPSQTLDWNIVKQEQEMLLDQNLPKMASAPEGPLVTSQPQDGESPVSESPPFYKPSFSWDTLASSYNHSYQQTPSTMQSAFLERSVRLYGSPLVPSTESPLDFSLRYSPGMDTYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDVCGKTFGHAVSLEQHTHVHSQGVPTGSSPVPSLAVPGLEAPPAPDPPGPRFLRQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK", "length": 363, "header": "tr|A0A9J7G7Q7-1|A0A9J7G7Q7_CRIGR Isoform 1 of Zinc finger protein Gfi-1b OS=Cricetulus griseus OX=10029 GN=Gfi1b PE=4 SV=1 CANONICAL=A0A9J7G7Q7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7/entry#A0A9J7G7Q7-1", "sequence": { "sequence": "MPRSFLVKSKKAHTYHQPRAQDDDLVWPPAVIPVVKEHILSSSPVLGTLLPSQTLDWNIVKQEQEMLLDQNLPKMASAPEGPLVTSQPQDGESPVSESPPFYKPSFSWDTLASSYNHSYQQTPSTMQSAFLERSVRLYGSPLVPSTESPLDFSLRYSPGMDTYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDVCGKTFGHAVSLEQHTHVHSQGVPTGSSPVPSLAVPGLEAPPAPDPPGPRFLRQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK", "length": 363, "header": "tr|A0A9J7G7Q7-1|A0A9J7G7Q7_CRIGR Isoform 1 of Zinc finger protein Gfi-1b OS=Cricetulus griseus OX=10029 GN=Gfi1b PE=4 SV=1 CANONICAL=A0A9J7G7Q7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767332", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767332", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8XL46-1", "protein_name": "Growth factor independent 1B transcriptional repressor", "gene_name": "Gfi1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRSFLVKSKKAHTYHQPRAQGDDLVWPPAVIPVAKEHTQSGSPVLSTLLPSQTLDWSAVKQKQEMLLNQSLPKMASAPEGPHVTSQPQDGESPLSESPPFYKPSFSWDTLASSYRHSYQQTPSTMQSAFLERSVRLYGSPLVPSTESPLDFSLRYSPGMDTYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHTHVHSQGVPARSSPSPSLAVPGLEAPPAPDPPRPRFLRQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK", "length": 363 }, "evidence": [ { "id": "A0A9J7G7Q7", "url": "https://omabrowser.org/oma/group/A0A9J7G7Q7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AHS2-1", "protein_name": "Growth factor independent 1B transcriptional repressor", "gene_name": "GFI1B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRSFLVKSKKAHTYHQHRFVEDDLPIFTWDPITSAFTAAGDRDKTPEDGKKQDLEWVVPKQEKDSFQPKEESVPVQYLSRMLPGPSAQDVSISGLQVKDCTNPTSVPTFYKTGFSWDAFQLPYSYRQMSSTMQSALLEHPVSLYGSHLLPSAEPPLDYSMRYSSDMETYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACEVCGKTFGHAVSLEQHTNIHSQERSFECKMCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRETQHSLK", "length": 337 }, "evidence": [ { "id": "A0A9J7G7Q7", "url": "https://omabrowser.org/oma/group/A0A9J7G7Q7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SYB3-1", "protein_name": "Growth factor independent 1B transcriptional repressor", "gene_name": "GFI1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPRSFLVKSKKAHTYHQPRTREDELLWPLALGPVARDQVPSISPVLSSLFPNQRLDWTDLKREPQLELEQSSMTRLASGPEGPAVTSRPQDGDSPSSDSPPFYKPSFSWDTLASSYGHSYRQAPSTMQSAFLERSVSLYGSPLVPSAEPPLDFSLHYSPGMDAYHCIKCSKVFSTPHGLEVHARRSHSGTRPFACNVCGKTFGHSVSLEQHTHVHSQATPTECPVPQGIPAGSSPAPTPDPPGPRFLRQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRESQHNLK", "length": 363 }, "evidence": [ { "id": "A0A9J7G7Q7", "url": "https://omabrowser.org/oma/group/A0A9J7G7Q7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VTD9-1", "protein_name": "Zinc finger protein Gfi-1b", "gene_name": "GFI1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRSFLVKSKKAHTYHQPRVQEDEPLWPPALTPVPRDQAPSNSPVLSTLFPNQCLDWTNLKREPELEQDQNLARMAPAPEGPIVLSRPQDGDSPLSDSPPFYKPSFSWDTLATTYGHSYRQAPSTMQSAFLEHSVSLYGSPLVPSTEPALDFSLRYSPGMDAYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHTHVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK", "length": 330 }, "evidence": [ { "id": "A0A9J7G7Q7", "url": "https://omabrowser.org/oma/group/A0A9J7G7Q7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G7Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Q7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 191, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278889" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Setx", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5", "locus": {} } ], "crossref": [ { "id": "cd18042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18808", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18808", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763725", "url": "https://www.ncbi.nlm.nih.gov/gene/100763725", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763725", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763725", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G7R5", "url": "https://www.orthodb.org/?gene=A0A9J7G7R5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10887:SF537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10887:SF537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13086", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13086", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13087", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13087", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G790", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G790", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G790-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G790-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7R5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTCCWCTPGGTSTVDVLKCYASSTGSSEFQTADEDLCYCLECVAEYHRARDEVPFLHEVLWELETLRLINHFEKSMKAEVEDDELYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKYPYLLLHERVNELCVEALCRMEQANCSFQVFDKYPGIYLFLVHPNEMIRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSDDESMDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNYNPEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILVSVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFARSSEKSSGSIPKGAAIISSLALHSVPSNSVQLACVQLIRGLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTAQETHELQMCLKQIIRNIKFKMPQYSTFGDLTSTCKTPPSFKEESEQIDRKPKKDMYCLENFSPTCSKEPLKADSNQVLMKANNTEEEGIKQHYIGLNEEEEPLPAELCLKQKSEALFSGSAQEQVQISTEKSVTENSSFTPQNNTIRNGSEWGYDRGVIISTRSLTDSSTDSLEKVSTSNEDVSLKDDTVGKNSKPKSKAQKDEICAKLSHVIKKQHRKSTLINNTVILEENTAMSDLENCSEKDREVLKEDAVTHDVSSDPVLDDEHEEQNSENSSKKQLKSEESYNSDKSKCQIQEHHATDDLLSFTEVTNTLVKKTSCEDPVKVVVESRDKEIRKSTVLISNLVKGQVPHGSSKPLVTGSQTDLCNITSVAQTTVIQFPTGTSKSPSQLQRKDDRCLTANQNSADTCHGQIIVISDSDEDDDERSHGIEKHTQKDKVCTEKECPEQHGLVVNTGVEKKLIKEEETKFSVEFEDSESQVFEFESSSEVYSVWQDHKVDSKNFLQEEGKSCVTHVADSTNNNLGCGADSVSEEIARNEAEDVEEHAEPHSSVSAEEFCKTGGKQHKRKRCDRVTVEDPQRPSSSVRPEQLADDRDLAGIDTGTSASSSRVERDSTLSPMKSTKPRTHPKPVRKVPASKAIKKTHSDTKRGQNKSSCYISCRTSPAIVPPKKFRQCPEPTSTVEKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKTKLIPPPTLSIKNNKKLLTSQDLQFQRLMRSRSHQKRDLDYKNTDTARTVPRTVQGSDVPVPDSDGPDNRGSEPPANSNEKQLAKCMPSKLEVAKAISDPRVTDIASLVNQCESRVLSGGVPTDVIFASEDPVGEDAPTLPFGEVAAVKAAEPESSSDTDDDNLFLTQHDPQDMDLCSQMENNKLIVVTHKDAIQRDDSVNQPQLVESLSVTKCKYKDCVETTKNQGEYCPRHSEAKAADDDVFRKPGLPLSVARPLRPTTTKIFSSSSASRTANFSKSLESTILQSALKNKSSGAQPNLKVTPPSSIVSQKPVAEVKSLCNIFNFQTPSSSSKRSYKLTLSDSKPVSASSAVNILLPSQSIFDTFIKEVLKWKYQMFLNFDKCGAPPSLSQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWFNSPNKENFYHLHLRKFPADYKKYWEFMIYLEESELAKQLHPKENDLVFLVPERLNREKKDMNRNGMQDRNGYYCGYVHKFRRTSVMRSGKAECSLCIQTQDNLPVRLNEFMKCIVISSLVTTQRKLKAMSLLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIITYLKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKDLPSHIQEMLRKKEFLDGQLDELSRQRALCRGGREMQRLELDGCIVKVSKERQELASKIKEVQGRPQKTQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPILQLTIQYRMHPDICLFPSNYVYNKNLKTNRMTETIRCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDISSRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMIGESRQQDPEASSQKKKSSECMHTSDELDFSTFTQSGVSCIENGVTHTGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTCDPNYRHDAMKILKLKPVLQRSLTHPPATAPEAPRPQGGLPSNKLDSGLAKTSFAASLYHTPSDAVTKEPERPPLQDRLRDPRLLRRLDAEAKGTLLKNAQPLNSQLPGLVHLLGESGIPLFLHDLSFIVPPSTAIVAPMNSHRSPLQAEPPPAHPAAPSTSKRKYSDRDSGFSHRRESRDFSEEERRGSVTHHMLRSTDWNRRRLEQEDSSAKKRRFL", "length": 2690, "header": "tr|A0A9J7G7R5-1|A0A9J7G7R5_CRIGR Isoform 1 of Probable helicase senataxin isoform X1 OS=Cricetulus griseus OX=10029 GN=Setx PE=4 SV=1 CANONICAL=A0A9J7G7R5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G790-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5/entry#A0A9J7G790-1", "sequence": { "sequence": "MSTCCWCTPGGTSTVDVLKCYASSTGSSEFQTADEDLCYCLECVAEYHRARDEVPFLHEVLWELETLRLINHFEKSMKAEVEDDELYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKYPYLLLHERVNELCVEALCRMEQANCSFQVFDKYPGIYLFLVHPNEMIRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSDDESMDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNYNPEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILVSVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFARSSEKSSGSIPKGAAIISSLALHSVPSNSVQLACVQLIRGLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTAQETHELQMCLKQIIRNIKFKMPQYSTFGDLTSTCKTPPSFKEESEQIDRKPKKDMYCLENFSPTCSKEPLKADSNQVLMKANNTEEEGIKQHYIGLNEEEEPLPAELCLKQKSEALFSGSAQEQVQISTEKSVTENSSFTPQNNTIRNGSEWGYDRGVIISTRSLTDSSTDSLEKVSTSNEDVSLKDDTVGKNSKPKSKAQKDEICAKLSHVIKKQHRKSTLINNTVILEENTAMSDLENCSEKDREVLKEDAVTHDVSSDPVLDDEHEEQNSENSSKKQLKSEESYNSDKSKCQIQEHHATDDLLSFTEVTNTLVKKTSCEDPVKVVVESRDKEIRKSTVLISNLVKGQVPHGSSKPLVTGSQTDLCNITSVAQTTVIQFPTGTSKSPSQLQRKDDRCLTANQNSADTCHGQIIVISDSDEDDDERSHGIEKHTQKDKVCTEKECPEQHGLVVNTGVEKKLIKEEETKFSVEFEDSESQVFEFESSSEVYSVWQDHKVDSKNFLQEEGKSCVTHVADSTNNNLGCGADSVSEEIARNEAEDVEEHAEPHSSVSAEEFCKTGGKQHKRKRCDRVTVEDPQRPSSSVRPEQLADDRDLAGIDTGTSASSSRVERDSTLSPMKSTKPRTHPKPVRKVPASKAIKKTHSDTKRGQNKSSCYISCRTSPAIVPPKKFRQCPEPTSTVEKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKTKLIPPPTLSIKNNKKLLTSQDLQFQRLMRSRSHQKRDLDYKNTDTARTVPRTVQGSDVPVPDSDGPDNRGSEPPANSNEKQLAKCMPSKLEVAKAISDPRVTDIASLVNQCESRVLSGGVPTDVIFASEDPVGEDAPTLPFGEVAAVKAAEPESSSDTDDDNLFLTQHDPQDMDLCSQMENNKLIVVTHKDAIQRDDSVNQPQLVESLSVTKCKYKDCVETTKNQGEYCPRHSEAKAADDDVFRKPGLPLSVARPLRPTTTKIFSSSSASRTANFSKSLESTILQSALKNKSSGAQPNLKVTPPSSIVSQKPVAEVKSLCNIFNFQTPSSSSKRSYKLTLSDSKPVSASSAVNILLPSQSIFDTFIKEVLKWKYQMFLNFDKCGAPPSLSQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWFNSPNKENFYHLHLRKFPADYKKYWEFMIYLEESELAKQLHPKENDLVFLVPERLNREKKDMNRNGMQDRNGYYCGYVHKFRRTSVMRSGKAECSLCIQTQDNLPVRLNEFMKCIVISSLVTTQRKLKAMSLLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIITYLKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKDLPSHIQEMLRKKEFLDGQLDELSRQRALCRGGREMQRLELDGCIVKVSKERQELASKIKEVQGRPQKTQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPILQLTIQYRMHPDICLFPSNYVYNKNLKTNRMTETIRCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDISSRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTCDPNYRHDAMKILKLKPVLQRSLTHPPATAPEAPRPQGGLPSNKLDSGLAKTSFAASLYHTPSDAVTKEPERPPLQDRLRDPRLLRRLDAEAKGTLLKNAQPLNSQLPGLVHLLGESGIPLFLHDLSFIVPPSTAIVAPMNSHRSPLQAEPPPAHPAAPSTSKRKYSDRDSGFSHRRESRDFSEEERRGSVTHHMLRSTDWNRRRLEQEDSSAKKRRFL", "length": 2635, "header": "tr|A0A9J7G790-1|A0A9J7G790_CRIGR Computationally mapped isoform of Helicase senataxin OS=Cricetulus griseus OX=10029 GN=Setx PE=3 SV=1 CANONICAL=A0A9J7G7R5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G7R5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5/entry#A0A9J7G7R5-1", "sequence": { "sequence": "MSTCCWCTPGGTSTVDVLKCYASSTGSSEFQTADEDLCYCLECVAEYHRARDEVPFLHEVLWELETLRLINHFEKSMKAEVEDDELYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKYPYLLLHERVNELCVEALCRMEQANCSFQVFDKYPGIYLFLVHPNEMIRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSDDESMDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNYNPEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILVSVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFARSSEKSSGSIPKGAAIISSLALHSVPSNSVQLACVQLIRGLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTAQETHELQMCLKQIIRNIKFKMPQYSTFGDLTSTCKTPPSFKEESEQIDRKPKKDMYCLENFSPTCSKEPLKADSNQVLMKANNTEEEGIKQHYIGLNEEEEPLPAELCLKQKSEALFSGSAQEQVQISTEKSVTENSSFTPQNNTIRNGSEWGYDRGVIISTRSLTDSSTDSLEKVSTSNEDVSLKDDTVGKNSKPKSKAQKDEICAKLSHVIKKQHRKSTLINNTVILEENTAMSDLENCSEKDREVLKEDAVTHDVSSDPVLDDEHEEQNSENSSKKQLKSEESYNSDKSKCQIQEHHATDDLLSFTEVTNTLVKKTSCEDPVKVVVESRDKEIRKSTVLISNLVKGQVPHGSSKPLVTGSQTDLCNITSVAQTTVIQFPTGTSKSPSQLQRKDDRCLTANQNSADTCHGQIIVISDSDEDDDERSHGIEKHTQKDKVCTEKECPEQHGLVVNTGVEKKLIKEEETKFSVEFEDSESQVFEFESSSEVYSVWQDHKVDSKNFLQEEGKSCVTHVADSTNNNLGCGADSVSEEIARNEAEDVEEHAEPHSSVSAEEFCKTGGKQHKRKRCDRVTVEDPQRPSSSVRPEQLADDRDLAGIDTGTSASSSRVERDSTLSPMKSTKPRTHPKPVRKVPASKAIKKTHSDTKRGQNKSSCYISCRTSPAIVPPKKFRQCPEPTSTVEKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKTKLIPPPTLSIKNNKKLLTSQDLQFQRLMRSRSHQKRDLDYKNTDTARTVPRTVQGSDVPVPDSDGPDNRGSEPPANSNEKQLAKCMPSKLEVAKAISDPRVTDIASLVNQCESRVLSGGVPTDVIFASEDPVGEDAPTLPFGEVAAVKAAEPESSSDTDDDNLFLTQHDPQDMDLCSQMENNKLIVVTHKDAIQRDDSVNQPQLVESLSVTKCKYKDCVETTKNQGEYCPRHSEAKAADDDVFRKPGLPLSVARPLRPTTTKIFSSSSASRTANFSKSLESTILQSALKNKSSGAQPNLKVTPPSSIVSQKPVAEVKSLCNIFNFQTPSSSSKRSYKLTLSDSKPVSASSAVNILLPSQSIFDTFIKEVLKWKYQMFLNFDKCGAPPSLSQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWFNSPNKENFYHLHLRKFPADYKKYWEFMIYLEESELAKQLHPKENDLVFLVPERLNREKKDMNRNGMQDRNGYYCGYVHKFRRTSVMRSGKAECSLCIQTQDNLPVRLNEFMKCIVISSLVTTQRKLKAMSLLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIITYLKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKDLPSHIQEMLRKKEFLDGQLDELSRQRALCRGGREMQRLELDGCIVKVSKERQELASKIKEVQGRPQKTQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPILQLTIQYRMHPDICLFPSNYVYNKNLKTNRMTETIRCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDISSRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMIGESRQQDPEASSQKKKSSECMHTSDELDFSTFTQSGVSCIENGVTHTGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTCDPNYRHDAMKILKLKPVLQRSLTHPPATAPEAPRPQGGLPSNKLDSGLAKTSFAASLYHTPSDAVTKEPERPPLQDRLRDPRLLRRLDAEAKGTLLKNAQPLNSQLPGLVHLLGESGIPLFLHDLSFIVPPSTAIVAPMNSHRSPLQAEPPPAHPAAPSTSKRKYSDRDSGFSHRRESRDFSEEERRGSVTHHMLRSTDWNRRRLEQEDSSAKKRRFL", "length": 2690, "header": "tr|A0A9J7G7R5-1|A0A9J7G7R5_CRIGR Isoform 1 of Probable helicase senataxin isoform X1 OS=Cricetulus griseus OX=10029 GN=Setx PE=4 SV=1 CANONICAL=A0A9J7G7R5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763725", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763725", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "transcription termination site sequence-specific DNA binding", "id": "GO:0001147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001147", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "termination of RNA polymerase II transcription", "id": "GO:0006369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006369", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": 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"https://www.uniprot.org/uniprotkb/A0A8C2MB35" } ] } ] }, { "uniprot_ac": "A0A8C2MBY6", "gene_name": "Entpd3", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] } ] }, { "uniprot_ac": "A0A8C2MCA5", "gene_name": "Ddx41", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] } ] 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= O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] } ] }, { "uniprot_ac": "A0A8C2MPK3", "gene_name": "Mcm6", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPK3" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2MPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPK3" } ] } ] }, { "uniprot_ac": "A0A8C2MQ86", "gene_name": "Ddx50", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MQ86", "database": "UniProtKB", "url": 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"A0A8C2MWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWE0" } ] } ] }, { "uniprot_ac": "A0A8C2MWH4", "gene_name": "Ddx25", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MWH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWH4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MWH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWH4" } ] } ] }, { "uniprot_ac": "A0A8C2MYM8", "gene_name": "Tdrd9", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYM8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYM8" } ] } ] }, { "uniprot_ac": "A0A8C2N055", "gene_name": "Ythdc2", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2N055", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N055" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2N055", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N055" } ] } ] }, { "uniprot_ac": "A0A8C2N184", "gene_name": "Entpd8", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] } ] }, { "uniprot_ac": "A0A8C2N236", "gene_name": "Atp13a4", "activity": [ { "ec_number": "7.2.2.-", "activity": "", "evidence": [ { "id": "A0A8C2N236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N236" } ] } ] }, { "uniprot_ac": "A0A8C2N386", "gene_name": "Vcp", "activity": [ { "ec_number": "3.6.4.6", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] }, { "ec_number": "3.6.4.6", "activity": "", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] } ] }, { "uniprot_ac": "A0A8C2QH91", "gene_name": "Ino80", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A8C2QH91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH91" } ] } ] }, { "uniprot_ac": "A0A8C2QHV1", "gene_name": "Ddx20", "activity": [ { "ec_number": "3.6.1.15", "activity": "a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-diphosphate + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.1.15", "activity": "", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] } ] }, { "uniprot_ac": "A0A8C2QLX9", "gene_name": "Ddx52", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QLX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLX9" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QLX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLX9" } ] } ] }, { "uniprot_ac": "A0A8C2QM19", "gene_name": "Clpx", "activity": [ { "ec_number": "3.6.4.10", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM19" } ] }, { "ec_number": "3.6.4.10", "activity": "", "evidence": [ { "id": "A0A8C2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM19" } ] } ] }, { "uniprot_ac": "A0A8C2QNE7", "gene_name": "Eif4a3", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QNE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNE7" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QNE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNE7" } ] } ] }, { "uniprot_ac": "A0A9J7F1E5", "gene_name": "Hltf", "activity": [ { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "A0A9J7F1E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E5" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "A0A9J7F1E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E5" } ] } ] }, { "uniprot_ac": "A0A9J7F876", "gene_name": "Ddx11", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7F876", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F876" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7FCH5" } ] } ] }, { "uniprot_ac": "A0A9J7FI19", "gene_name": "Xrcc6", "activity": [ { "ec_number": "4.2.99.18", "activity": "2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "4.2.99.18", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": 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H(+).", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.49", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] } ] }, { "uniprot_ac": "A0A9J7FV95", "gene_name": "LOC100751095", "activity": [ { "ec_number": "7.2.2.-", "activity": "", "evidence": [ { "id": "A0A9J7FV95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV95" } ] } ] }, { "uniprot_ac": "A0A9J7FXI2", "gene_name": "Ddx10", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI2" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI2" } ] } ] }, { "uniprot_ac": "A0A9J7FYM8", "gene_name": "Ddx54", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] } ] }, { "uniprot_ac": "A0A9J7G1N4", "gene_name": "Fancm", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] } ] }, { "uniprot_ac": "A0A9J7G2T1", "gene_name": "Dhx9", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G2T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2T1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G2T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2T1" } ] } ] }, { "uniprot_ac": "A0A9J7G412", "gene_name": "Helz2", "activity": [ { "ec_number": "3.1.13.1", "activity": "Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] }, { "ec_number": "3.1.13.1", "activity": 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{ "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] } ] }, { "uniprot_ac": "A0A9J7G7V8", "gene_name": "Dhx35", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G7V8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7V8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G7V8", "database": 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"activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7GF88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF88" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7GF88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF88" } ] } ] }, { "uniprot_ac": "A0A9J7GHR4", "gene_name": "Ercc2", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7GHR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHR4" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7GHR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHR4" } ] } ] }, { "uniprot_ac": "A0A9J7GID0", "gene_name": "LOC103158905", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7GID0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7GID0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID0" } ] } ] }, { "uniprot_ac": "A0A9J7GN75", "gene_name": "LOC100753355", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7GN75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN75" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7GN75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN75" } ] } ] }, { "uniprot_ac": "A0A9J7GR00", "gene_name": "Entpd1", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614077.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504622", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504622" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slpi", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7R6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7R6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00199", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00199", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758279", "url": "https://www.ncbi.nlm.nih.gov/gene/100758279", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758279", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758279", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NLKCCKG", "url": "https://omabrowser.org/oma/group/NLKCCKG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G7R6", "url": "https://www.orthodb.org/?gene=A0A9J7G7R6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19441", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19441", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19441:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19441:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00095", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504622", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504622", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGTAHQSHSAFTMKSSTFFPFMVLLALGILASWTVEGGKNDAIKSGACPSRRPVNCLRKEKPECDSDWQCPGNKRCCQFRCGFKCIDPLPIRTAVRSKPGKCPKIQGQCLMLNPPNRCKRDGECAGNYKCCLGMCGKLCLLPQ", "length": 144, "header": "tr|A0A9J7G7R6-1|A0A9J7G7R6_CRIGR Isoform 1 of Antileukoproteinase OS=Cricetulus griseus OX=10029 GN=Slpi PE=4 SV=1 CANONICAL=A0A9J7G7R6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6/entry#A0A9J7G7R6-1", "sequence": { "sequence": "MLGTAHQSHSAFTMKSSTFFPFMVLLALGILASWTVEGGKNDAIKSGACPSRRPVNCLRKEKPECDSDWQCPGNKRCCQFRCGFKCIDPLPIRTAVRSKPGKCPKIQGQCLMLNPPNRCKRDGECAGNYKCCLGMCGKLCLLPQ", "length": 144, "header": "tr|A0A9J7G7R6-1|A0A9J7G7R6_CRIGR Isoform 1 of Antileukoproteinase OS=Cricetulus griseus OX=10029 GN=Slpi PE=4 SV=1 CANONICAL=A0A9J7G7R6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758279", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758279", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1TY84-1", "protein_name": "Secretory leukocyte peptidase inhibitor", "gene_name": "SLPI", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKSSGLLPFVLLALGILAPWAVEGAENALKGGACPPRKIVQCLRYEKPKCTSDWQCPDKKKCCRDTCGIKCLNPVAITNPVKVKPGKCPVVYGQCMMLNPPNHCKTDSQCLGDLKCCKSMCGKVCLTPVKA", "length": 131 }, "evidence": [ { "id": "A0A9J7G7R6", "url": "https://omabrowser.org/oma/group/A0A9J7G7R6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { 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"Human" }, { "uniprot_canonical_ac": "P97430-1", "protein_name": "Antileukoproteinase", "gene_name": "Slpi", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSCGLLPFTVLLALGILAPWTVEGGKNDAIKIGACPAKKPAQCLKLEKPQCRTDWECPGKQRCCQDACGSKCVNPVPIRKPVWRKPGRCVKTQARCMMLNPPNVCQRDGQCDGKYKCCEGICGKVCLPPM", "length": 131 }, "evidence": [ { "id": "A0A9J7G7R6", "url": "https://omabrowser.org/oma/group/A0A9J7G7R6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "antibacterial humoral response", "id": "GO:0019731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019731", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G7R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R6" }, { "id": "PS51390", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WAP", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 90, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"XP_027279331", "name": "EMILIN-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279331" }, "gene_names": [ { "name": "Emilin3", "type": "recommended", "evidence": [ { "id": "A0A9J7G7U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2" } ] }, { "name": "Emilin3", "type": "synonym", "evidence": [ { "id": "XP_027279331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279331" } ] } ], "protein_names": [ { "name": "EMILIN-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027279331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279331" }, { "id": "A0A9J7G7U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279331" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Emilin3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7U2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7U2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771706", "url": "https://www.ncbi.nlm.nih.gov/gene/100771706", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771706", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771706", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G7U2", "url": "https://www.orthodb.org/?gene=A0A9J7G7U2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLRLPVWLCAVAALLSGAQAKGTPLLARPAQPSVSRYSLYTTGWRPRLRPGPHKSLCAYVVHRNVTCILQEGAESYIKAEYRQCGWGPNCPSTVRYRSVLRPRYKIGYKTVTDVAWRCCPGLTGAGCPEHLTDHGATPPRREPEPQTPLGQLVPGPRPPSYNREAPSPHGRKGQGLFGERLEQLEGDVRRLSQAYGTLSGLVASQEDPNRITGDSRAPVAPIGFGVIPEGLLDPEDRGRGIIPPLGEILSKVTEVSNTLQTKVQLLDEVHGLALGHEAHLQRLREATPSPLTSLALLEEYVDQRLQRLWGSLLDGFEQKLQGVQSECDLRVQEVRQQCEEGQAASQRLHQSLDGRELALRRELSQLGTQLQGLTLTGGGTCCSQVALINARVDSLERNLQAVTEAQGGLSTLAADELARLSAAMLQGGVDGLLEGLETINRTNDGARGCCLRMEMGGWGVGGFRSMLEERVQNLEERLAALTGELSHNSATPDRSARPLIQTELAVLEQRLVSLETSCTPSTTSAILDNLVAEVKAWQSRSEALLRQVASHTALLQQLNGTVAEVQGQLAEGTGSSLQGEITLLKVNLNSVSKSLTGLSDSVSQYSDAFLAANTSLDERERKVEAEVHAIQEQVSSQGSRLQAGHRQVLNLRGELEKLKAGVANVAGGLSRCRDTAQELQHTVGHFDQRVAQVEGAYERLGLLAAHLNNLPTEQLRSRENLWGHIDKLNHTLAQHTQDIARLRDDLLDCRAQLAEVRPGQAD", "length": 763, "header": "tr|A0A9J7G7U2-1|A0A9J7G7U2_CRIGR Isoform 1 of EMILIN-3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Emilin3 PE=4 SV=1 CANONICAL=A0A9J7G7U2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7U2/entry#A0A9J7G7U2-1", "sequence": { "sequence": "MGLRLPVWLCAVAALLSGAQAKGTPLLARPAQPSVSRYSLYTTGWRPRLRPGPHKSLCAYVVHRNVTCILQEGAESYIKAEYRQCGWGPNCPSTVRYRSVLRPRYKIGYKTVTDVAWRCCPGLTGAGCPEHLTDHGATPPRREPEPQTPLGQLVPGPRPPSYNREAPSPHGRKGQGLFGERLEQLEGDVRRLSQAYGTLSGLVASQEDPNRITGDSRAPVAPIGFGVIPEGLLDPEDRGRGIIPPLGEILSKVTEVSNTLQTKVQLLDEVHGLALGHEAHLQRLREATPSPLTSLALLEEYVDQRLQRLWGSLLDGFEQKLQGVQSECDLRVQEVRQQCEEGQAASQRLHQSLDGRELALRRELSQLGTQLQGLTLTGGGTCCSQVALINARVDSLERNLQAVTEAQGGLSTLAADELARLSAAMLQGGVDGLLEGLETINRTNDGARGCCLRMEMGGWGVGGFRSMLEERVQNLEERLAALTGELSHNSATPDRSARPLIQTELAVLEQRLVSLETSCTPSTTSAILDNLVAEVKAWQSRSEALLRQVASHTALLQQLNGTVAEVQGQLAEGTGSSLQGEITLLKVNLNSVSKSLTGLSDSVSQYSDAFLAANTSLDERERKVEAEVHAIQEQVSSQGSRLQAGHRQVLNLRGELEKLKAGVANVAGGLSRCRDTAQELQHTVGHFDQRVAQVEGAYERLGLLAAHLNNLPTEQLRSRENLWGHIDKLNHTLAQHTQDIARLRDDLLDCRAQLAEVRPGQAD", "length": 763, "header": "tr|A0A9J7G7U2-1|A0A9J7G7U2_CRIGR Isoform 1 of EMILIN-3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Emilin3 PE=4 SV=1 CANONICAL=A0A9J7G7U2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277093" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z1", "locus": {} } ], "crossref": [ { "id": "A0A9J7G7Z1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G7Z1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754366", "url": "https://www.ncbi.nlm.nih.gov/gene/100754366", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754366", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754366", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G7Z1", "url": "https://www.orthodb.org/?gene=A0A9J7G7Z1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGVVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGLTTNIVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESPFSRSVTSNQSDGTQESCESPDVLDRHQTMEVSC", "length": 375, "header": "tr|A0A9J7G7Z1-1|A0A9J7G7Z1_CRIGR Isoform 1 of Protein NDRG3 OS=Cricetulus griseus OX=10029 GN=LOC100754366 PE=3 SV=1 CANONICAL=A0A9J7G7Z1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7Z1/entry#A0A9J7G7Z1-1", "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGVVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGLTTNIVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESPFSRSVTSNQSDGTQESCESPDVLDRHQTMEVSC", "length": 375, "header": "tr|A0A9J7G7Z1-1|A0A9J7G7Z1_CRIGR Isoform 1 of Protein NDRG3 OS=Cricetulus griseus OX=10029 GN=LOC100754366 PE=3 SV=1 CANONICAL=A0A9J7G7Z1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278531" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G809", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836462", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809", "locus": {} } ], "crossref": [ { "id": "A0A9J7G809", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G809", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836462", "url": "https://www.ncbi.nlm.nih.gov/gene/113836462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G809", "url": "https://www.orthodb.org/?gene=A0A9J7G809", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278531", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G809", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G809-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDMDLSRRGQSLEMKSLLLTVTLFVLVAVLQAQDDLPFLSEDKNVSGTWYRKATVSNVNITESERPMEEFPFVMRTLEKGKIEITVTTMLNGECIQREFMMDKKKPGQYTAFWNMFLLYIYELPVMDHYIFYSEMKVLEQKVYVGELIGKDPTENHEALEDFKKFTERKGFPQENIIVPKQREMCVPVDDNDAPHSCKS", "length": 200, "header": "tr|A0A9J7G809-1|A0A9J7G809_CRIGR Isoform 1 of Vomeronasal secretory protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113836462 PE=3 SV=1 CANONICAL=A0A9J7G809-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G809-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809/entry#A0A9J7G809-1", "sequence": { "sequence": "MTDMDLSRRGQSLEMKSLLLTVTLFVLVAVLQAQDDLPFLSEDKNVSGTWYRKATVSNVNITESERPMEEFPFVMRTLEKGKIEITVTTMLNGECIQREFMMDKKKPGQYTAFWNMFLLYIYELPVMDHYIFYSEMKVLEQKVYVGELIGKDPTENHEALEDFKKFTERKGFPQENIIVPKQREMCVPVDDNDAPHSCKS", "length": 200, "header": "tr|A0A9J7G809-1|A0A9J7G809_CRIGR Isoform 1 of Vomeronasal secretory protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113836462 PE=3 SV=1 CANONICAL=A0A9J7G809-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G809", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G809", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G809" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 184, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G821-1", "uniprot_ac": "A0A9J7G821", "uniprot_id": "A0A9J7G821_CRIGR", "mass": { "chemical_mass": 80907.0, "monoisotopic_mass": 80907.0 }, "refseq": { "ac": "XP_007640026", "name": "protein FAM83C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640026" }, "gene_names": [ { "name": "Fam83c", "type": "recommended", "evidence": [ { "id": "A0A9J7G821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G821" } ] }, { "name": "Fam83c", 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record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613833.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640026" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G821", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G821" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam83c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G821", "locus": {} } ], "crossref": [ { "id": "A0A9J7G821", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G821", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09183", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09183", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761734", "url": "https://www.ncbi.nlm.nih.gov/gene/100761734", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761734", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761734", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G821", "url": "https://www.orthodb.org/?gene=A0A9J7G821", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16181", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181:SF29", "url": 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"MHTSSSLASGGTQGMAGPLRSRVEELKRPWWRESSPLVLQHSEAARLATDALLERGEAAYLQVISEERELPFLSALDVDYMVGHVRGVPELNEAQGPETVGHDRLSMLSEVTSGTYFPMASDLDPPDLDLGWPEVPQATGFSPTQAVVHFQRDKGKSIKDLLRFLFSQAHTVVAVVMDVFTDMELLCDLMEASSRRGVPVYLLLAQEHLKYFLEMCYKMDLNGGHLVNMRVRSTCGDTYCSKAGRRFTGQALEKFVIIDCEQVVAGSYSFTWLCSQAHTSMVLQLRGHIVEDFDREFRCLYAESQPVEGFCGNEDPLSSRVPRPPPVTLAFGPGIPSATGSSPSSNSLGSIKHSPFLGRSSYLALPGGGGCSDMVMGSLSPGPAHHEAGSPPSLYRQLSDPNHSSTPGPYRANLSKLGASPWSQSSPALNHCSASPLTLAVGSPLLPCSRPLLHFTRGVPALSRLPENGLPASQEPILPRGRWVPGTALETVDEKKVSLSQSHDHLDRIVPFPKAGEAGGSNSRVTPNSGSLQHGEQALDDRRLSLSHSYSQLDLLSQGQGVLESGSLRPGDLGLEDRKLPLNHSHGQLDLLPQNPKAQPSKILPDANSSARPDKPSLDERRQTLGHSQLDLITKFGPFRSEGPGPNGLPEPNPVRMAGVGSADEKRLTLGHSKLDLITKYHQLQGARQRPEPGLPGAPISGHQNSNSNDLFAPEKRLTLGHSKLDLITKYNKSKFKQLRSRFES", "length": 745, "header": "tr|A0A9J7G821-1|A0A9J7G821_CRIGR Isoform 1 of Protein FAM83C OS=Cricetulus griseus OX=10029 GN=Fam83c PE=3 SV=1 CANONICAL=A0A9J7G821-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G821-1", "url": 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CANONICAL=A0A9J7G821-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 406, "start_aa": "Thr", "end_pos": 406, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr406", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G821", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G821" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"name": "surfeit locus protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027278797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278797" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278797" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8C7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Surf2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8C7", "locus": {} } ], "crossref": [ { "id": "A0A9J7G8C7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G8C7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770577", "url": "https://www.ncbi.nlm.nih.gov/gene/100770577", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008833", 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280940" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Luc7l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8", "locus": {} } ], "crossref": [ { "id": "100768915", "url": "https://www.ncbi.nlm.nih.gov/gene/100768915", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768915", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768915", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAC8", "url": "https://www.orthodb.org/?gene=A0A9J7GAC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HBR9", "url": "https://www.orthodb.org/?gene=G3HBR9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HBR9", "url": "https://www.uniprot.org/uniprotkb/G3HBR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HBR9-1", "url": "https://www.uniprot.org/uniprotkb/G3HBR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERSLREESWEYGRSERGPTDWRLESSNGKTASRRSEEKEAGEI", "length": 371, "header": "tr|A0A9J7GAC8-1|A0A9J7GAC8_CRIGR Isoform 1 of RNA-binding protein Luc7-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Luc7l PE=3 SV=1 CANONICAL=A0A9J7GAC8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8/entry#A0A9J7GAC8-1", "sequence": { "sequence": "MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERSLREESWEYGRSERGPTDWRLESSNGKTASRRSEEKEAGEI", "length": 371, "header": "tr|A0A9J7GAC8-1|A0A9J7GAC8_CRIGR Isoform 1 of RNA-binding protein Luc7-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Luc7l PE=3 SV=1 CANONICAL=A0A9J7GAC8-1" }, "locus": {} }, { "isoform_ac": "G3HBR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8/entry#G3HBR9-1", "sequence": { "sequence": "MDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERSLREESWEYGRSERGPTDWRLESSNGKTASRRSEEKEAGEI", "length": 318, "header": "tr|G3HBR9-1|A0A9J7GAC8_CRIGR Computationally mapped isoform of RNA-binding protein Luc7-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Luc7l PE=3 SV=1 CANONICAL=A0A9J7GAC8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HBR9", "url": "https://www.uniprot.org/uniprotkb/G3HBR9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768915", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768915", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "U1 snRNP", "id": "GO:0005685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005685", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splice site recognition", "id": "GO:0006376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006376", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GCU6-1", "uniprot_ac": "A0A9J7GCU6", "uniprot_id": "A0A9J7GCU6_CRIGR", "mass": { "chemical_mass": 45112.0, "monoisotopic_mass": 45112.0 }, "refseq": { "ac": "XP_007642559", "name": "proline-rich protein 11 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642559" }, "gene_names": [ { "name": "Prr11", "type": "recommended", "evidence": [ { "id": "A0A9J7GCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" } ] }, { "name": "Prr11", "type": "synonym", "evidence": [ { "id": "XP_007642559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642559" } ] } ], "protein_names": [ { "name": "Proline-rich protein 11 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 11 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642559" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614004.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_007642559.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642559" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prr11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6", "locus": {} } ], "crossref": [ { "id": "A0A9J7GCU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GCU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755467", "url": "https://www.ncbi.nlm.nih.gov/gene/100755467", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR059983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755467", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755467", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RVWSIYN", "url": "https://omabrowser.org/oma/group/RVWSIYN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GCU6", "url": "https://www.orthodb.org/?gene=A0A9J7GCU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HJ86", "url": "https://www.orthodb.org/?gene=G3HJ86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23330", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23330", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23330:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23330:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28521", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28521", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HJ86", "url": "https://www.uniprot.org/uniprotkb/G3HJ86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HJ86-1", "url": "https://www.uniprot.org/uniprotkb/G3HJ86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSQPIVIQAVLGTAQDNEPCRDRVCDWSLLETMPKFKQRRRKLRAKAKRLFKKKEASRVQPKLLTPPPPPPTPERVVTSSTDTPQSRNWLKHSWNFRFPNIKDAINLWTNRVWYMYSCCQTCVAQSLEVLKDAIFPSRVYHRELHSLKQQFCALKSELCSLQETLKTISENSSYSSCCHTCGKSNKLTNVPACAPTTHGESPTVLPPTLPQPASHPPPPPPPPPPPPPPPPPPLPPPPPPLAPLLLRKSGSTKALQTEPLKKDGPMHITVKDLLTVKLKKTQNIEERKKLSPPPPEERNPLVTISDLQRVTLKPNSRVLATRVKNVLITPGKSQLDLRKLLRKVNVDRSPGGTPLTNKENMETGTGLTPVMTRALRRKFQLAHPQSPTQSLPLSTSSFDEQN", "length": 403, "header": "tr|A0A9J7GCU6-1|A0A9J7GCU6_CRIGR Isoform 1 of Proline-rich protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prr11 PE=4 SV=1 CANONICAL=A0A9J7GCU6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6/entry#A0A9J7GCU6-1", "sequence": { "sequence": "MRSQPIVIQAVLGTAQDNEPCRDRVCDWSLLETMPKFKQRRRKLRAKAKRLFKKKEASRVQPKLLTPPPPPPTPERVVTSSTDTPQSRNWLKHSWNFRFPNIKDAINLWTNRVWYMYSCCQTCVAQSLEVLKDAIFPSRVYHRELHSLKQQFCALKSELCSLQETLKTISENSSYSSCCHTCGKSNKLTNVPACAPTTHGESPTVLPPTLPQPASHPPPPPPPPPPPPPPPPPPLPPPPPPLAPLLLRKSGSTKALQTEPLKKDGPMHITVKDLLTVKLKKTQNIEERKKLSPPPPEERNPLVTISDLQRVTLKPNSRVLATRVKNVLITPGKSQLDLRKLLRKVNVDRSPGGTPLTNKENMETGTGLTPVMTRALRRKFQLAHPQSPTQSLPLSTSSFDEQN", "length": 403, "header": "tr|A0A9J7GCU6-1|A0A9J7GCU6_CRIGR Isoform 1 of Proline-rich protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prr11 PE=4 SV=1 CANONICAL=A0A9J7GCU6-1" }, "locus": {} }, { "isoform_ac": "G3HJ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6/entry#G3HJ86-1", "sequence": { "sequence": "MPKFKQRRRKLRAKAKRLFKKKEASRVQPKLLTPPPPPPTPERVVTSSTDTPQSRNWLKHSWNFRFPNIKDAINLWTNRVWYMYSCCQTCVAQSLEVLKDAIFPSRVYHRELHSLKQQFCALKSELCSLQETLKTISENSSYSSCCHTCGKSNKLTNVPACAPTTHGESPTVLPPTLPQPASHPPPPPPPPPPPPPPPPPPLPPPPPPLAPLLLRKSGSTKALQTEPLKKDGPMHITVKDLLTVKLKKTQNIEERKKLSPPPPEERNPLVTISDLQRVTLKPNSRVLATRVKNVLITPGKSQLDLRKLLRKVNVDRSPGGTPLTNKENMETGTGLTPVMTRALRRKFQLAHPQSPTQSLPLSTSSFDEQN", "length": 370, "header": "tr|G3HJ86-1|A0A9J7GCU6_CRIGR Computationally mapped isoform of Proline-rich protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prr11 PE=4 SV=1 CANONICAL=A0A9J7GCU6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 73, "start_aa": "Thr", "end_pos": 73, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HJ86", "url": "https://www.uniprot.org/uniprotkb/G3HJ86" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HJ86", "url": "https://www.uniprot.org/uniprotkb/G3HJ86" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755467", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755467", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GJX6-1", "protein_name": "Proline rich 11", "gene_name": "Prr11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKFKQRRRKLRAKAKRLCKTKEASRVLPKLLAPPPPPPTPERVVTSSADIPQSRNWLRPSWNLRLPNFKAAINLWTNRAWCIYSCCQTRVAQSLEVLKDAIFPSRVYHRELHSLKQQLCVLKSELCELQENLKSISEHSSRSSCCHTCCGGDRLTTVPACAPTTHGESQTALPPTLPQPASHPPPPPPLLPLPPPPPPLPPPPPPLAPLLLRKSGSTKALQVEPLKKDGPMHITVKDLLTVKLKKTQNIDERRKFVPSPPEERTPLVTVSDLQRITLKPNSRVLATRIKNVLITPGKSQIDLRKLLRKVEVERSPGGTPLNNKENMDTGTGLTPVMTRALRRKFQLAHPQSPTQSLPLSTSNFDEQN", "length": 368 }, "evidence": [ { "id": "A0A9J7GCU6", "url": "https://omabrowser.org/oma/group/A0A9J7GCU6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHE0-1", "protein_name": "Proline-rich protein 11", "gene_name": "Prr11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKYKQRRRKLKAKAKRMSKKKEAAVVSPKLLTPSPPLPEPERVVTSAADIPQSRNWLRPSWNLRFPNIKDAINLWTNRAWCIYSCCQTCVAQSLEVLKDALFPSRVYHRELHSLKQQLCVLKRELCKLRENLKSISENSSCSSCCHKCCPSDKLTTVPACAPTTNGESQTVLSSTQPQPANHPPSPPPLPPPPPPPPPLPPPPPPLAPLLLRKSGTTKALQVEPLKKDGPMHITVKDLLNVKLKKTQSVDERKKLVPSPPEERTPLVTVSDLQHVTLKPNSRVSATRIKNVLITPGKSQIDLRKLLRKVQVERSPGGTPLNNKENMDTGTGLTPVMTRALRRKFQLAHPQSPTQSLPLSTSSFDEQN", "length": 368 }, "evidence": [ { "id": "A0A9J7GCU6", "url": "https://omabrowser.org/oma/group/A0A9J7GCU6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96HE9-1", "protein_name": "Proline-rich protein 11", "gene_name": "PRR11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKFKQRRRKLKAKAERLFKKKEASHFQSKLITPPPPPPSPERVGISSIDISQSRSWLTSSWNFNFPNIRDAIKLWTNRVWSIYSWCQNCITQSLEVLKDTIFPSRICHRELYSVKQQFCILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQPASHFPPPPPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKTQSLDEKRKLIPSPKARNPLVTVSDLQHVTLKPNSKVLSTRVTNVLITPGKSQMDLRKLLRKVDVERSPGGTPLTNKENMETGTGLTPVMTQALRRKFQLAHPRSPTPTLPLSTSSFDEQN", "length": 360 }, "evidence": [ { "id": "A0A9J7GCU6", "url": "https://omabrowser.org/oma/group/A0A9J7GCU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" }, { "id": "PF28521", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28521" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PRR11 first helical", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 135, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU6" }, { "id": "PF28520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PRR11 second helical", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 168, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 73 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GF27-1", "uniprot_ac": "A0A9J7GF27", "uniprot_id": "A0A9J7GF27_CRIGR", "mass": { "chemical_mass": 93743.0, "monoisotopic_mass": 93743.0 }, "refseq": { "ac": "XP_007643331", "name": "pleckstrin homology domain-containing family H member 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643331" }, "gene_names": [ { "name": "Plekhh3", "type": "recommended", "evidence": [ { "id": "A0A9J7GF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" } ] }, { "name": "Plekhh3", "type": "synonym", "evidence": [ { "id": "XP_007643331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643331" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family H member 3", "type": "recommended", "evidence": [ { "id": "A0A9J7GF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family H member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007643331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643331" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614078.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643331" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekhh3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27", "locus": {} } ], "crossref": [ { "id": "A0A9J7GF27", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GF27", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13297", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13297", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759719", "url": "https://www.ncbi.nlm.nih.gov/gene/100759719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759719", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759719", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QCLMGDF", "url": "https://omabrowser.org/oma/group/QCLMGDF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GE08", "url": "https://www.orthodb.org/?gene=A0A9J7GE08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GF27", "url": "https://www.orthodb.org/?gene=A0A9J7GF27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HLY2", "url": "https://www.orthodb.org/?gene=G3HLY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46049:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46049:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00784", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00784", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007643331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GE08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HLY2", "url": "https://www.uniprot.org/uniprotkb/G3HLY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HLY2-1", "url": "https://www.uniprot.org/uniprotkb/G3HLY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLWASRRTQGAVHLLGALRQRRRHAWPDLALPLPSLPGPRPIPSPSASARAKECGEAGWAARTPGFALLTVHEHWGQMRELSPREPGQGKKDSLELGSASGTLQRKSWGRWPFEDLSLSCHLGQKSLPSLGSLDVALTQPTRSGLVSDRLQSWEETWSLIPDKGLPEDDPDVVVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHSSSALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGFPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHQDFSPRGPLPRLDRLLPPPTPPREQSLRPTPRPQPSAALLAGALWSPGLAKRRAERARGGCTGCSTGSTAQVGGGGASRTTAVLGSWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSAPPCQDLPDSTPPSQHQGLEEPQGQSGCLGQLQD", "length": 870, "header": "tr|A0A9J7GF27-1|A0A9J7GF27_CRIGR Isoform 1 of Pleckstrin homology domain-containing family H member 3 OS=Cricetulus griseus OX=10029 GN=Plekhh3 PE=4 SV=1 CANONICAL=A0A9J7GF27-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GE08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27/entry#A0A9J7GE08-1", "sequence": { "sequence": "MCLWASRRTQGAVHLLGALRQRRRHAWPDLALPLPSLPGPRPIPSPSASARAKECGEAGWAARTPGFALLTVHEHWGQMRELSPREPGQGKKDSLELGSASGTLQRKSWGRWPFEDLSLSCHLGQKSLPSLGSLDVALTQPTRSGLVSDRLQSWEETWSLIPDKGLPEDDPDVVVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHSSSALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGFPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTSLTSEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHQDFSPRGPLPRLDRLLPPPTPPREQSLRPTPRPQPSAALLAGALWSPGLAKRRAERARGGCTGCSTGSTAQVGGGGASRTTAVLGSWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSAPPCQDLPDSTPPSQHQGLEEPQGQSGCLGQLQD", "length": 867, "header": "tr|A0A9J7GE08-1|A0A9J7GE08_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family H member 3 OS=Cricetulus griseus OX=10029 GN=Plekhh3 PE=4 SV=1 CANONICAL=A0A9J7GF27-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27/entry#A0A9J7GF27-1", "sequence": { "sequence": "MCLWASRRTQGAVHLLGALRQRRRHAWPDLALPLPSLPGPRPIPSPSASARAKECGEAGWAARTPGFALLTVHEHWGQMRELSPREPGQGKKDSLELGSASGTLQRKSWGRWPFEDLSLSCHLGQKSLPSLGSLDVALTQPTRSGLVSDRLQSWEETWSLIPDKGLPEDDPDVVVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHSSSALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGFPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHQDFSPRGPLPRLDRLLPPPTPPREQSLRPTPRPQPSAALLAGALWSPGLAKRRAERARGGCTGCSTGSTAQVGGGGASRTTAVLGSWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSAPPCQDLPDSTPPSQHQGLEEPQGQSGCLGQLQD", "length": 870, "header": "tr|A0A9J7GF27-1|A0A9J7GF27_CRIGR Isoform 1 of Pleckstrin homology domain-containing family H member 3 OS=Cricetulus griseus OX=10029 GN=Plekhh3 PE=4 SV=1 CANONICAL=A0A9J7GF27-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27/entry#A0A9J7GIK7-1", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDDETFELRTPSPAGGGRGSLDVALTQPTRSGLVSDRLQSWEETWSLIPDKGLPEDDPDVVVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHSSSALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGFPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTSLTSEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHQDFSPRGPLPRLDRLLPPPTPPREQSLRPTPRPQPSAALLAGALWSPGLAKRRAERARGGCTGCSTGSTAQVGGGGASRTTAVLGSWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSAPPCQDLPDSTPPSQHQGLEEPQGQSGCLGQLQD", "length": 790, "header": "tr|A0A9J7GIK7-1|A0A9J7GIK7_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family H member 3 OS=Cricetulus griseus OX=10029 GN=Plekhh3 PE=4 SV=1 CANONICAL=A0A9J7GF27-1" }, "locus": {} }, { "isoform_ac": "G3HLY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27/entry#G3HLY2-1", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDDETFELRTPSPAGGGRGSLDVALTQPTRSGLVSDRLQSWEETWSLIPDKGLPEDDPDVVVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHSSSALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGFPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHQDFSPRGPLPRLDRLLPPPTPPREQSLRPTPRPQPSAALLAGALWSPGLAKRRAERARGGCTGCSTGSTAQVGGGGASRTTAVLGSWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSAPPCQDLPDSTPPSQHQGLEEPQGQSGCLGQLQD", "length": 793, "header": "tr|G3HLY2-1|A0A9J7GF27_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family H member 3 OS=Cricetulus griseus OX=10029 GN=Plekhh3 PE=4 SV=1 CANONICAL=A0A9J7GF27-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 644, "start_aa": "Thr", "end_pos": 644, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr644", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HLY2", "url": "https://www.uniprot.org/uniprotkb/G3HLY2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HLY2", "url": "https://www.uniprot.org/uniprotkb/G3HLY2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759719", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759719", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1B7G7-1", "protein_name": "Pleckstrin homology domain-containing family H member 3", "gene_name": "PLEKHH3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDEETFELRTPSPAGGGRGPLDVTLTQPMRSGPVSDRLQSWEETRSLIPEKGPSEDDPDVVVKGWLYREPRGGGARPWLPPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVSGPERRPKETGLWSVTVSGRKHSVRLCSPRQSEAECWGVALREVIASKAPLETPTQLLLRDIQESRGDPEAVALIYRRNPILRHTSGALYAPLLPLPYGVTAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALRDELFLQLAKQTSGPAGPPGPPATQDPAALRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRRALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVAIDSHTTAGEVARELVGRLGLTRSRNTFALYEQRGAQERALAGGTLVADVLTRFENLAAEEAGLEDPPDTGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHRDFPPRAPLPRLDRLLPTPARPREDPPRPVPRPPPSAALLAGAIWSPSLAKRRAERARHGGAGRTAGSVAREGGGGAGRAAAVLGGWKRLRGMGRAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGRVAACQLMGPHTLALRVGESQLLLQSPQVEEIVQLVNAYLANPSPERPSSSPPPCQDLPDTSPPSQHPGLDEPQGQSGCLGQLQD", "length": 792 }, "evidence": [ { "id": "A0A9J7GF27", "url": "https://omabrowser.org/oma/group/A0A9J7GF27/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "I3ITQ9-1", "protein_name": "Pleckstrin homology domain-containing family H member 3", "gene_name": "plekhh3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPLPGLCWLVCCRQGFSLLARDHGEKEEEESFELRNQDEHTHTGRGQLEVTLSQPTRSANGTPCLSGVPEEKRSLITQKTKMTMDEDPEVVVKGWLLREVQGGWLRQRRFWFVLTSDSLDYYSGPDRDARRLGTLVLTSLCSVLWPDKHTYKQTGYWSLTVYGRKHCYRLFTKHYNEAVHWACAVQKVIDSKAPVETPTQLLIRDIEENKFNPEVVEHIYQHNPILRYTQSPLYAPLLPFPYGSLHHTHMASKGYTSIREEAVRLFNCLQQLESAREPIPLIQGILQTCLDLRPLRDELYCQLIKQTSTTSSRVQTQTNPNPQLRYWQLLTCMSCTFLPSCGILRYLRFHLKRVQSLSVDPEVESYASFIGQALEKTRGRECVPSWEEIQGLMGRQEILCTVHYPGPGCCQIPITSHTTANEVVRKMAERLGLQDSRNTFGLFEQNACWEKAIGGSTIIADVITRFENLSAKDPDSDCQCRLCFKLYCLLDTENISTDSIEYLFLYEQCHEMVVRGQLPACEEDLLSLAALRLQYLLGDFSALSPYPALEQLFPAEVVEARALLAPVDPPGCPSFPGGLLAGTLWGHKRRQEQDQRLRARLREEGAVVMSTILERWKALVGYSGRDSMAAYLTIARQWSGFGCTLYEVDFYISSTGSFSQKLWLGVAASCVTLYRQGEAEALESLPITQICSYGVSDSNTFRITAGDRDLLFETTKLTEIMQLMNAYFSATRRQLGKDDCISLETNPKLHPSLFELPSHPV", "length": 761 }, "evidence": [ { "id": "A0A9J7GF27", "url": "https://omabrowser.org/oma/group/A0A9J7GF27/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3B7L1-1", "protein_name": "Pleckstrin homology domain-containing family H member 3", "gene_name": "Plekhh3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDDETFELRSPSPAGGGRGSLDVTLTQPTRNGPITDRLQSWEETWSLIPDKGLPEDDPDVIVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESGGDPEAVALIYRRNPILRHTSSALYAPLLPLPYEVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGLPATQDPAALRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVSIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTSLTSEEVGLEDSPDSGWRLCLRLHGPLHPEGLSPEGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHRDFSPRGPLPLLDRLMPPPAPPREQPSRPARRPPPSAALLAGALWSPGLAKRRAERARRIGTGRSTESTAQVGGGGGGSTTAAVLGGWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGESEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMELVNAYLANPSPERPCSSSGPPSQDLSDTSPPSQHQVLEKPQGQSGCLRQLQD", "length": 791 }, "evidence": [ { "id": "A0A9J7GF27", "url": "https://omabrowser.org/oma/group/A0A9J7GF27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z736-1", "protein_name": "Pleckstrin homology domain-containing family H member 3", "gene_name": "PLEKHH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDEETFELRTPSPAGGGRGPLEVTLTQPVRSGPVSNRLQSWEETWSLIPEKGLPEDDPDIVVKGWLYREPRGGGARPWLPPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRRKETGLWSVTVSGRKHSVRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYLRNPILRHTSGALYAPLLPLPYGVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALRDELFLQLAKQTSGPAGPPGLPATQDPAALRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSQRQELLCTVHCPGAGACAVAIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLAAEEAGLEDSPDSGWRLCLRLHGPLHPEGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLQRDFSPRVPLPRLDRLLPPPAPPREDPPRPTPRPPPSAALLAGALWSPGLAKRRAERARRGGAGRTAGSIAREGGGGAGTAAAVLGGWKRLRGMGRAEAMAAYLALAAQCPGFGAARYDVLELSTEPGRGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLMGPHTLALRVGESQLLLQSPQVEEIMQLVNAYLANPSPERPCSSSSPPCQDLPDTSPPSQRPGLDEPQGQSGCLGQLQD", "length": 793 }, "evidence": [ { "id": "A0A9J7GF27", "url": "https://omabrowser.org/oma/group/A0A9J7GF27/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VCE9-1", "protein_name": "Pleckstrin homology domain-containing family H member 3", "gene_name": "Plekhh3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDDETFELRTPSPAGGGRGSLDVTLTQPTRNGPISDRLQGWEETWSLIPDKGLPEEDPDIIVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQLLLRDIQESCGDPEAVALIYRRNPILRHTSSALYAPLLPLPYEVSAPGPGYAPLREEAVRLFLALQALEGARRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGLPATQDPATLRYWQLLTCMSCTFRPGGAVRGHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVSIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEAGLEDSPDCGWRLCLRLHGPLHPEGLSPEGHELPFLFEQAHALLLRGRPPPPEDTLRALAALRLQSLHRDFSPRGPLPLLDRLLPPPIPPREQPPCPTRRPPPSAALLAGALWSPGLAKRRAERARRGGTGRSTGSTAQVGGGGASTTAAVLGGWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEPIHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMELVNAYLANPSPERPCRSGSSSGPPSQDLPDTSPPSQHQVLEEPQGQSGCLKQLQD", "length": 796 }, "evidence": [ { "id": "A0A9J7GF27", "url": "https://omabrowser.org/oma/group/A0A9J7GF27/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 481, "end_pos": 834, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" }, { "id": "PS51016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MyTH4", "eco_id": "ECO_0000259", "start_pos": 314, "end_pos": 476, "start_aa": "His", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF27" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 276, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 644 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 551, "end_pos": 553 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GF14-1", "uniprot_ac": "A0A9J7GF14", "uniprot_id": "A0A9J7GF14_CRIGR", "mass": { "chemical_mass": 118852.0, "monoisotopic_mass": 118852.0 }, "refseq": { "ac": "XP_007652175", "name": "putative sodium-coupled neutral amino acid transporter 10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652175" }, "gene_names": [ { "name": "Slc38a10", "type": "recommended", "evidence": [ { "id": "A0A9J7GF14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" } ] }, { "name": "Slc38a10", "type": "synonym", "evidence": [ { "id": "XP_007652175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652175" } ] } ], "protein_names": [ { "name": "Sodium-coupled neutral amino acid transporter 10 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GF14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#names_and_taxonomy" } ] }, { "name": "putative sodium-coupled neutral amino acid transporter 10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652175" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613637.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652175", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652175" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc38a10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14", "locus": {} } ], "crossref": [ { "id": "A0A9J7GF14", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GF14", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763275", "url": "https://www.ncbi.nlm.nih.gov/gene/100763275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763275", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GDF0", "url": "https://www.orthodb.org/?gene=A0A9J7GDF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GF14", "url": "https://www.orthodb.org/?gene=A0A9J7GF14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JXV4", "url": "https://www.orthodb.org/?gene=A0A9J7JXV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GX59", "url": "https://www.orthodb.org/?gene=G3GX59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950:SF646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950:SF646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652175", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652175", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GDF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GX59", "url": "https://www.uniprot.org/uniprotkb/G3GX59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GX59-1", "url": "https://www.uniprot.org/uniprotkb/G3GX59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLLPCPSPTHSFVPRLLWRRWDLRAKTPRLLPDDTQECGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPADLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1099, "header": "tr|A0A9J7GF14-1|A0A9J7GF14_CRIGR Isoform 1 of Sodium-coupled neutral amino acid transporter 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GDF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#A0A9J7GDF0-1", "sequence": { "sequence": "MTAASASKWGLVTNVVNSIVGVSVLTMPFCFKQCGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPDLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1093, "header": "tr|A0A9J7GDF0-1|A0A9J7GDF0_CRIGR Computationally mapped isoform of Sodium-coupled neutral amino acid transporter 10 isoform X5 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#A0A9J7GF14-1", "sequence": { "sequence": "MGLLPCPSPTHSFVPRLLWRRWDLRAKTPRLLPDDTQECGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPADLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1099, "header": "tr|A0A9J7GF14-1|A0A9J7GF14_CRIGR Isoform 1 of Sodium-coupled neutral amino acid transporter 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#A0A9J7JXV4-1", "sequence": { "sequence": "MGLLPCPSPTHSFVPRLLWRRWDLRAKTPRLLPDDTQECGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPADLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1098, "header": "tr|A0A9J7JXV4-1|A0A9J7JXV4_CRIGR Computationally mapped isoform of Sodium-coupled neutral amino acid transporter 10 isoform X3 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KB23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#A0A9J7KB23-1", "sequence": { "sequence": "MGLLPCPSPTHSFVPRLLWRRWDLRAKTPRLLPDDTQECGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPDLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1098, "header": "tr|A0A9J7KB23-1|A0A9J7KB23_CRIGR Computationally mapped isoform of Sodium-coupled neutral amino acid transporter 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "locus": {} }, { "isoform_ac": "G3GX59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14/entry#G3GX59-1", "sequence": { "sequence": "MTAASASKWGLVTNVVNSIVGVSVLTMPFCFKQCGIILGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFAPLLGLRVTNSFRVFLLFTVSLCIVLPLSLQRNMMASIQSFSAMALLFYTIFMFVIVLSSLKHGLFGGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATAGNVLIHFPSNLVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKALTLSVVFGTMVGGIMIPNVETILGLTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGVLVVSTVTTLSVSEEAPLDLAQEARSGRRGDTEGGIKVEAAQLSVQDPIVVVAEDSQEKPKPPEDKEALEQAQIKGPVEVPGGEAPKEKQEAAQLDRPGQGIAVPVGEAHRHEPPIPHDKVVVDEGEDQDGPEEKKPPPGLTDEGDPGGKGQMAPPAPKSERKQEAERGEEGKRPEQALAVGEAEHPQKVPEANGQPPVQPRKEESRPDNGDLLSVESRLSVEQNALVAGDGKEAAQKAGGVPRKLVEIDPESNVGEKVGLPAQRSVPAEERELKEAERPGGDQAGSKLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEDEEDKAKPADLQPEPGMAVLRRQEEEEALDEHAGETVEGGPPQPLQPVLGAPMGRPAPPQEMGQHPLEEAKPVPGRDLADLPAGGSDTGPQGAQTKLREDQKGASLKVAGAVRDLAPRDLEPVPKADSAGAPPKSPEKQFAEEVARQHLDAFGGGSLERKETAKEAMAAGADIPKEPAQPLARAEAGGSRTKSRQSEPTMVPARLADTGFQPQARFQQEPQAIPDKGQGSHPEVRSEAPQGVHIPAEGQHRGNGGAAIEETNKRPDPDSAPRLAVPGGQKPENAKPNRDLKVQADSDLRRRRRDLASPPEQELAPKDRVIISFDSLPNVQVNDLRSALDTQLRQAAGAVVQVVHSRQIRQLPGDLEEA", "length": 1094, "header": "tr|G3GX59-1|A0A9J7GF14_CRIGR Computationally mapped isoform of Sodium-coupled neutral amino acid transporter 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc38a10 PE=3 SV=1 CANONICAL=A0A9J7GF14-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GX59", "url": "https://www.uniprot.org/uniprotkb/G3GX59" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GX59", "url": "https://www.uniprot.org/uniprotkb/G3GX59" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763275", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763275", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "L-amino acid transmembrane transporter activity", "id": "GO:0015179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015179", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GF14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF14" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 387, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G979-1", "uniprot_ac": "A0A9J7G979", "uniprot_id": "A0A9J7G979_CRIGR", "mass": { "chemical_mass": 73012.0, "monoisotopic_mass": 73012.0 }, "refseq": { "ac": "XP_007645035", "name": "ankyrin repeat and SAM domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645035" }, "gene_names": [ { "name": "Anks3", "type": "recommended", "evidence": [ { "id": "A0A9J7G979", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979" } ] }, { "name": "Anks3", "type": "synonym", "evidence": [ { "id": "XP_007645035", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645035" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and SAM domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G979", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and SAM domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645035", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645035" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614230.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645035" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G979", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Anks3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979", "locus": {} } ], "crossref": [ { "id": "A0A9J7G979", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G979", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09519", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09519", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772275", "url": "https://www.ncbi.nlm.nih.gov/gene/100772275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772275", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKDVHTQ", "url": "https://omabrowser.org/oma/group/RKDVHTQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G979", "url": "https://www.orthodb.org/?gene=A0A9J7G979", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G9M1", "url": "https://www.orthodb.org/?gene=A0A9J7G9M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JTJ1", "url": "https://www.orthodb.org/?gene=A0A9J7JTJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HS56", "url": "https://www.orthodb.org/?gene=G3HS56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24184:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24184:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645035", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G979", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G979-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4N9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4N9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4N9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4N9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HS56", "url": "https://www.uniprot.org/uniprotkb/G3HS56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HS56-1", "url": "https://www.uniprot.org/uniprotkb/G3HS56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSKGWPSPLQALSLPELSGALEDCVHEMGIMLCNTEPGEATDAEWEEMAGTVARRDDSDVG", "length": 664, "header": "tr|A0A9J7G979-1|A0A9J7G979_CRIGR Isoform 1 of Ankyrin repeat and SAM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G979-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#A0A9J7G979-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSKGWPSPLQALSLPELSGALEDCVHEMGIMLCNTEPGEATDAEWEEMAGTVARRDDSDVG", "length": 664, "header": "tr|A0A9J7G979-1|A0A9J7G979_CRIGR Isoform 1 of Ankyrin repeat and SAM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#A0A9J7G9M1-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSKGWPSPLQALSLPELSGALEDCVHEMDSDVG", "length": 636, "header": "tr|A0A9J7G9M1-1|A0A9J7G9M1_CRIGR Computationally mapped isoform of Ankyrin repeat and SAM domain-containing protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#A0A9J7H2F1-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKILTLGDGSTLKLYVPCKTGQ", "length": 537, "header": "tr|A0A9J7H2F1-1|A0A9J7H2F1_CRIGR Computationally mapped isoform of Ankyrin repeat and SAM domain-containing protein 3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4N9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#A0A9J7H4N9-1", "sequence": { "sequence": "MYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSKGWPSPLQALSLPELSGALEDCVHEMGIMLCNTEPGEATDAEWEEMAGTVARRDDSDVG", "length": 591, "header": "tr|A0A9J7H4N9-1|A0A9J7H4N9_CRIGR Computationally mapped isoform of Ankyrin repeat and SAM domain-containing protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#A0A9J7JTJ1-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSDVG", "length": 608, "header": "tr|A0A9J7JTJ1-1|A0A9J7JTJ1_CRIGR Computationally mapped isoform of Ankyrin repeat and SAM domain-containing protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} }, { "isoform_ac": "G3HS56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979/entry#G3HS56-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWYGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVCGFTPLMEAAASGHEIIVQYFLNHGVKVDIRDHSGATARMLARQYGHMKIVALMDTHSPALPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKPQTSYEQVPPRGYVTFTSSDENTLEVEGLCYRDVTSPINERDVESSSSSSREEPTFCASPGPVWRSSSSDGLARRAQGLSSEASIESDEDSDHTRKSLVRRQTKSYLKSKSRYSNSDNQWPSSTGTTCTPGFEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQSLAKDAALVLDQLRACQAELSARVRQDQSPSEATLSPPFLSADSKGWPSPLQALSLPELSGALEDCVHEMGQALCSVTQSLEKLQTLNGKKWREP", "length": 656, "header": "tr|G3HS56-1|A0A9J7G979_CRIGR Computationally mapped isoform of Ankyrin repeat and SAM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Anks3 PE=4 SV=1 CANONICAL=A0A9J7G979-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HS56", "url": "https://www.uniprot.org/uniprotkb/G3HS56" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HS56", "url": "https://www.uniprot.org/uniprotkb/G3HS56" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772275", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772275", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YXV5-1", "protein_name": "Ankyrin repeat and sterile alpha motif domain containing 3", "gene_name": "ANKS3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSELSDEASESELLSRSLSMWHGVGQMLCREELDVPLDLHTASSIGQYEVVQECIQCGDVDLNKKNCGGWTPLMYASYIGHDTIVHLLLEAGVNVNIPTPEGQTPLMLASSCGNESVAYFLLQQGAELEMKDIHGWTALFHCTSAGHQQMVKFLLDNGANANCKEPVYGYTPLMEAAASGHEIIVQYLLNHGVKADARDNTGATARTLAMKYGHTKIVGLIDLHAAPVPKVFCRDPGKYEELSSSDESCSAPQRQRPVRRTKGPSIHDGPQALAKITAVGIGGKKQSRYEQVLPQGYVTFSDDGSCEADDIRNRDVTSPINEQDVESSSSREDNVFFTNNLAAIRSSSSSSECLTRALGVSSEGSLESNEDSDHAGSPPSRKQAKSFKVKNRYSNSDGQWTHCPGKAGASSQHLIFPESPAYTGPQDLATFLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSNARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEVMKGQVSQEQKLRAVAESCLMERDETWNAVQCRLREAQTITKDAGVLLDQIKSCQAELSSRLTQEQAAGRVLDSKGQLGTAREGWPLSLKSLSLPELSAVLEKCVGEMGKALQMVTQNLQRLQAPGQGAQSWLEP", "length": 656 }, "evidence": [ { "id": "A0A9J7G979", "url": "https://omabrowser.org/oma/group/A0A9J7G979/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BFT9-1", "protein_name": "Ankyrin repeat and sterile alpha motif domain containing 3", "gene_name": "ANKS3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWHGLGTQVGREELAVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVGLIDAHSPSLPKSLYRSPEKYEDLSSSDECGPVPQRQRPCRKKGLSIHEGPRALARITAIGLGGRVQQPCYEQVPPRGYVSFNSSDEHPLEGGGLCYRDVTSPINERDVESSSSSSREEQAFSANPVARSSSSEGLARAPGLSSEASLESNEDSDHVRRSSVRKQTKSYVKTKNRYSSNDSQWAPSAVTSCALGASPQTDRPPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEAMRGLVSQEQELRAVVESCLLEQDSARKDVRAQLQEARVLAQDAALVLDQLRACQAELSARVRRDEFLREAPLCPGLPAADPKGWQASLQALSLPELSGALEERVQEMGRVLCSVTQSLEKLQALSGKESWREP", "length": 655 }, "evidence": [ { "id": "A0A9J7G979", "url": "https://omabrowser.org/oma/group/A0A9J7G979/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5M9H0-1", "protein_name": "Ankyrin repeat and SAM domain-containing protein 3", "gene_name": "Anks3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWHGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSPINERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRACQAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPGETTDAEWEEMEGTIARRDDSDVG", "length": 663 }, "evidence": [ { "id": "A0A9J7G979", "url": "https://omabrowser.org/oma/group/A0A9J7G979/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZW76-1", "protein_name": "Ankyrin repeat and SAM domain-containing protein 3", "gene_name": "ANKS3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWHGLGTQVSGEELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANANVREPICGFTPLMEAAAAGHEIIVQYFLNHGVKVDARDHSGATARMLAKQYGHMKIVALMDTYSPSLPKSLYRSPEKYEDLSSSDESCPAPQRQRPCRKKGVSIHEGPRALARITGIGLGGRAPRPRYEQAPPRGYVTFNSSGENPLEEEGLCCRDVTSPINERDVESSSSSSSREEHAFCANLGPVQSSSSSEGLARAQGLSSEASVESNEDSDHACKSSARKQAKSYMKTKNPDSQWPPRAATDREGFLAESSPQTQRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPGDALELAYADRLEAEMQELAIQLHKRCEEVEATRGQVCQEQELRAVVESCLLEQDRAREDLQARLRETWALARDAALVLDQLRACQAELSSRVRQDQPPGAATLGLAVPPADSKGWQASLQAMSLPELSGALEDRVREMGQALCLVTQSLEKLQVLNGKKWRET", "length": 656 }, "evidence": [ { "id": "A0A9J7G979", "url": "https://omabrowser.org/oma/group/A0A9J7G979/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZK6-1", "protein_name": "Ankyrin repeat and SAM domain-containing protein 3", "gene_name": "Anks3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSELSDEASEPELLKRSLSMWHGLGAQGSPEELDVPLDLHTAASIGQHEVVKECVQRGELDLNKKNGGGWTALMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIHGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGYTPLMEAAASGHEIIVQYFLNHGVKVDTRDHSGATACMLARQFGHMKIVALMETHSPVLPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGLGGKTQTTYEQVPPRGYVTFTSSDENTMESEGLCYRDVTSPINEQDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRSYLKNKSRHGNSDGHWPSSTGPASIPGSEPQTEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDIDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLETEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRACQAELSARLRQHHSPREGTPNPHFLSADSKGWPIPLQALSLPELSGALEDRVHEMGQALCSVTQSLEKLQMLNAKKWREP", "length": 655 }, "evidence": [ { "id": "A0A9J7G979", "url": "https://omabrowser.org/oma/group/A0A9J7G979/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G979", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G979", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G979", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G979" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 425, "end_pos": 488, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 15, "end_pos": 17 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GBD5-1", "uniprot_ac": "A0A9J7GBD5", "uniprot_id": "A0A9J7GBD5_CRIGR", "mass": { "chemical_mass": 28137.0, "monoisotopic_mass": 28137.0 }, "refseq": { "ac": "XP_027281483", "name": "growth factor receptor-bound protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281483" }, "gene_names": [ { "name": "Grb2", "type": "recommended", "evidence": [ { "id": "A0A9J7GBD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ] }, { "name": "Grb2", "type": "synonym", "evidence": [ { "id": "XP_027281483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281483" } ] } ], "protein_names": [ { "name": "Growth factor receptor-bound protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GBD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5/entry#names_and_taxonomy" } ] }, { "name": "growth factor receptor-bound protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281483" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281483", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281483" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Grb2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GBD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GBD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09941", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09941", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11946", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11946", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11949", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11949", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769627", "url": "https://www.ncbi.nlm.nih.gov/gene/100769627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769627", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769627", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YVCPYNS", "url": "https://omabrowser.org/oma/group/YVCPYNS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GBD5", "url": "https://www.orthodb.org/?gene=A0A9J7GBD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GTE4", "url": "https://www.orthodb.org/?gene=G3GTE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281483", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281483", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTE4", "url": "https://www.uniprot.org/uniprotkb/G3GTE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTE4-1", "url": "https://www.uniprot.org/uniprotkb/G3GTE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKEDCPPTGEHNPVCLDDFITGARPTFLCVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 244, "header": "tr|A0A9J7GBD5-1|A0A9J7GBD5_CRIGR Isoform 1 of Growth factor receptor-bound protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grb2 PE=4 SV=1 CANONICAL=A0A9J7GBD5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GBD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5/entry#A0A9J7GBD5-1", "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKEDCPPTGEHNPVCLDDFITGARPTFLCVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 244, "header": "tr|A0A9J7GBD5-1|A0A9J7GBD5_CRIGR Isoform 1 of Growth factor receptor-bound protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grb2 PE=4 SV=1 CANONICAL=A0A9J7GBD5-1" }, "locus": {} }, { "isoform_ac": "G3GTE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5/entry#G3GTE4-1", "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 217, "header": "tr|G3GTE4-1|A0A9J7GBD5_CRIGR Computationally mapped isoform of Growth factor receptor-bound protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grb2 PE=4 SV=1 CANONICAL=A0A9J7GBD5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 238, "start_aa": "Thr", "end_pos": 238, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr238", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTE4", "url": "https://www.uniprot.org/uniprotkb/G3GTE4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTE4", "url": "https://www.uniprot.org/uniprotkb/G3GTE4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769627", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P62993-1", "protein_name": "Growth factor receptor-bound protein 2", "gene_name": "GRB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 217 }, "evidence": [ { "id": "A0A9J7GBD5", "url": "https://omabrowser.org/oma/group/A0A9J7GBD5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62994-1", "protein_name": "Growth factor receptor-bound protein 2", "gene_name": "Grb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 217 }, "evidence": [ { "id": "A0A9J7GBD5", "url": "https://omabrowser.org/oma/group/A0A9J7GBD5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q08012-1", "protein_name": "Growth factor receptor-bound protein 2", "gene_name": "drk", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVITVTDRSDENWWNGEIGNRKGIFPATYVTPYHS", "length": 211 }, "evidence": [ { "id": "A0A9J7GBD5", "url": "https://omabrowser.org/oma/group/A0A9J7GBD5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q60631-1", "protein_name": "Growth factor receptor-bound protein 2", "gene_name": "Grb2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQMPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV", "length": 217 }, "evidence": [ { "id": "A0A9J7GBD5", "url": "https://omabrowser.org/oma/group/A0A9J7GBD5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 10, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "ephrin receptor binding", "id": "GO:0046875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046875", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "epidermal growth factor receptor binding", "id": "GO:0005154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "insulin receptor substrate binding", "id": "GO:0043560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043560", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "neurotrophin TRKA receptor binding", "id": "GO:0005168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005168", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "transmembrane receptor protein tyrosine kinase adaptor activity", "id": "GO:0005068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor adaptor activity", "id": "GO:0005091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005091", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "Grb2-EGFR complex", "id": "GO:0070436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070436", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "vesicle membrane", "id": "GO:0012506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "COP9 signalosome", "id": "GO:0008180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008180", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 14, "go_terms": [ { "name": "receptor internalization", "id": "GO:0031623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031623", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "T cell activation", "id": "GO:0042110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042110", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "myelination", "id": "GO:0042552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042552", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "epidermal growth factor receptor signaling pathway", "id": "GO:0007173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007173", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "signal transduction in response to DNA damage", "id": "GO:0042770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042770", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "B cell receptor signaling pathway", "id": "GO:0050853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050853", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "positive regulation of reactive oxygen species metabolic process", "id": "GO:2000379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000379", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "insulin receptor signaling pathway", "id": "GO:0008286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008286", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "insulin-like growth factor receptor signaling pathway", "id": "GO:0048009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048009", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "negative regulation of natural killer cell mediated cytotoxicity", "id": "GO:0045953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045953", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBD5" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": 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Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007606729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007606729" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gps2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08", "locus": {} } ], "crossref": [ { "id": "cd22249", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22249", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766072", "url": "https://www.ncbi.nlm.nih.gov/gene/100766072", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026094", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026094", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766072", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766072", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QIEHANQ", "url": "https://omabrowser.org/oma/group/QIEHANQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GD08", "url": "https://www.orthodb.org/?gene=A0A9J7GD08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GY94", "url": "https://www.orthodb.org/?gene=G3GY94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22654", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22654", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22654:SF2", "url": 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"MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQAAGKALPPPANLALDSLSSNTAKIHDSTTSNQITPTNPLPPSSLMVGVFLCAPHQ", "length": 351, "header": "tr|A0A9J7GD08-1|A0A9J7GD08_CRIGR Isoform 1 of G protein pathway suppressor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gps2 PE=4 SV=1 CANONICAL=A0A9J7GD08-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GD08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08/entry#A0A9J7GD08-1", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQAAGKALPPPANLALDSLSSNTAKIHDSTTSNQITPTNPLPPSSLMVGVFLCAPHQ", "length": 351, "header": "tr|A0A9J7GD08-1|A0A9J7GD08_CRIGR Isoform 1 of G protein pathway suppressor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gps2 PE=4 SV=1 CANONICAL=A0A9J7GD08-1" }, "locus": {} }, { "isoform_ac": "G3GY94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08/entry#G3GY94-1", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQAAGKSGFATTSQPGPRLPFIQHSQNPRFYHK", "length": 327, "header": "tr|G3GY94-1|A0A9J7GD08_CRIGR Computationally mapped isoform of G protein pathway suppressor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gps2 PE=4 SV=1 CANONICAL=A0A9J7GD08-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GY94", "url": "https://www.uniprot.org/uniprotkb/G3GY94" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GY94", "url": "https://www.uniprot.org/uniprotkb/G3GY94" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766072", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766072", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GLY5-1", "protein_name": "G protein pathway suppressor 2", "gene_name": "Gps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQQKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGSALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQIQAAGKALPPPANRALDSLSSNTARTHDSITSNHQITPTHPPSLRVGSYVSQTNKMYKIYLPSCQSTVYLLPKPQKAVSYKASFSQQKQLSWGLHIKLVVLFRFDF", "length": 400 }, "evidence": [ { "id": "A0A9J7GD08", "url": "https://omabrowser.org/oma/group/A0A9J7GD08/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MPA7-1", "protein_name": "G protein pathway suppressor 2", "gene_name": "GPS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQTGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGKSGFATTSQPGPRLPFIQHSQNPRFYHK", "length": 327 }, "evidence": [ { "id": "A0A9J7GD08", "url": "https://omabrowser.org/oma/group/A0A9J7GD08/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13227-1", "protein_name": "G protein pathway suppressor 2", "gene_name": "GPS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLEEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGKSGFAATSQPGPRLPFIQHSQNPRFYHK", "length": 327 }, "evidence": [ { "id": "A0A9J7GD08", "url": "https://omabrowser.org/oma/group/A0A9J7GD08/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q921N8-1", "protein_name": "G protein pathway suppressor 2", "gene_name": "Gps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSLTVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQTGFLQPGSTLSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQIQAAGKSGFATTSQPGPRLPFIQHSQNPRFYHK", "length": 327 }, "evidence": [ { "id": "A0A9J7GD08", "url": "https://omabrowser.org/oma/group/A0A9J7GD08/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "positive regulation of cholesterol efflux", "id": "GO:0010875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010875", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "regulation of lipid metabolic process", "id": "GO:0019216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019216", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of inflammatory response", "id": "GO:0050728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050728", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "B cell differentiation", "id": "GO:0030183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030183", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of tumor necrosis factor-mediated signaling pathway", "id": "GO:0010804", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010804", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of fat cell differentiation", "id": "GO:0045599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045599", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of JNK cascade", "id": "GO:0046329", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046329", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of toll-like receptor signaling pathway", "id": "GO:0034122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "response to mitochondrial depolarisation", "id": "GO:0098780", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098780", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "positive regulation of peroxisome proliferator activated receptor signaling pathway", "id": "GO:0035360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035360", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of B cell receptor signaling pathway", "id": "GO:0050859", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050859", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "negative regulation of protein K63-linked ubiquitination", "id": "GO:1900045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900045", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "cyclin binding", "id": "GO:0030332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030332", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "transcription repressor complex", "id": "GO:0017053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017053", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"A0A9J7GBS3_CRIGR", "mass": { "chemical_mass": 154150.0, "monoisotopic_mass": 154150.0 }, "refseq": { "ac": "XP_007641127", "name": "transmembrane protein 94 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641127" }, "gene_names": [ { "name": "Tmem94", "type": "recommended", "evidence": [ { "id": "A0A9J7GBS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ] }, { "name": "Tmem94", "type": "synonym", "evidence": [ { "id": "XP_007641127", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641127" } ] } ], "protein_names": [ { "name": "Transmembrane protein 94 isoform X9", "type": "synonym", "evidence": [ { "id": "A0A9J7GBS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 94 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641127", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641127" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007641127.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641127", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641127" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3", "locus": {} } ], "crossref": [ { "id": "100769338", "url": "https://www.ncbi.nlm.nih.gov/gene/100769338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769338", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769338", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GBS3", "url": "https://www.orthodb.org/?gene=A0A9J7GBS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H289", "url": "https://www.orthodb.org/?gene=A0A9J7H289", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GTE3", "url": "https://www.orthodb.org/?gene=G3GTE3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13219:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13219:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007641127", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641127", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H289", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H289-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H289-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTE3", "url": "https://www.uniprot.org/uniprotkb/G3GTE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTE3-1", "url": "https://www.uniprot.org/uniprotkb/G3GTE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPDDECEISDAVTVTDSLGFVHVGADASFQGEPPLALGLSTRKALSVLKEQLEAVLEKHLKERKKCRTWKETWKSSFLHLNNRCSCFHWPGASLMLLAVLLLLCCYGGQPAGSHGVELVNASALFLLLLLNLILIGRQDRLKRQEVERRLRGIIDQIQDALRDGKEIKWPNAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVKKGPQNPQQHRLFRVLQTPVIDNIRWCLDTALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRFMFNAPGVTSWQYTLLQLQVNGMLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAKFSEDTLSSYTESVSSQEMLRCIWGHFLRVIQGTSPTLSHSASLLHSLGSVTVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDDLSTRSFCHPEVEEEPHERDALLAGSLNNTLHLSNEQEHGDWPSDGPKPSEPYSHHKVYGRSKHPSGSNVSFSRDTEGGEEEPGKTQPGTEGEHYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCNASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPSAETVKETSLGRPSCVTKRRPPLSHMISLFIKDTATSTEQMLSHGTADVVLEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMSCSLSSQLNGKCIELVQAPGQSSIFTMCELPSTVPIKPNIRRNSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHVSLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLLLEEEGHSDLISFQPTDSDIPSFLEDCNRAKLPRGIHQVRPHLQNIDNVPLLVPLFTDCTPDTMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDVSIALDPLYPSRCSWETFGYATSTTMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVIIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFTLQSFCDSARARNLTNCSSVMLCSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTVVDLQLWTHRDTRVHFGLEDVPLLTWLLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF", "length": 1383, "header": "tr|A0A9J7GBS3-1|A0A9J7GBS3_CRIGR Isoform 1 of Transmembrane protein 94 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem94 PE=4 SV=1 CANONICAL=A0A9J7GBS3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GBS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3/entry#A0A9J7GBS3-1", "sequence": { "sequence": 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"length": 1383, "header": "tr|A0A9J7GBS3-1|A0A9J7GBS3_CRIGR Isoform 1 of Transmembrane protein 94 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem94 PE=4 SV=1 CANONICAL=A0A9J7GBS3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H289-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3/entry#A0A9J7H289-1", "sequence": { "sequence": "MDLKEKHLGEPPLALGLSTRKALSVLKEQLEAVLEKHLKERKKCRTWKETWKSSFLHLNNRCSCFHWPGASLMLLAVLLLLCCYGGQPAGSHGVELVNASALFLLLLLNLILIGRQDRLKRQEVERRLRGIIDQIQDALRDGKEIKWPNAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVKKGPQNPQQHRLFRVLQTPVIDNIRWCLDTALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRFMFNAPGVTSWQYTLLQLQVNGMLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAKFSEDTLSSYTESVSSQEMLRCIWGHFLRVIQGTSPTLSHSASLLHSLGSVTVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDDLSTRSFCHPEPHERDALLAGSLNNTLHLSNEQEHGDWPSDGPKPSEPYSHHKVYGRSKHPSGSNVSFSRDTEGGEEEPGKTQPGTEGEHYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCNASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPSAETVKETSLGRPSCVTKRRPPLSHMISLFIKDTATSTEQMLSHGTADVVLEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMSCSLSSQLNGKCIELVQAPGQSSIFTMCELPSTVPIKPNIRRNSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHVSLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLLLEEEGHSDLISFQPTDSDIPSFLEDCNRAKLPRGIHQVRPHLQNIDNVPLLVPLFTDCTPDTMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDVSIALDPLYPSRCSWETFGYATSTTMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVIIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFTLQSFCDSARARNLTNCSSVMLCSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTVVDLQLWTHRDTRVHFGLEDVPLLTWLLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF", "length": 1356, "header": "tr|A0A9J7H289-1|A0A9J7H289_CRIGR Computationally mapped isoform of Transmembrane protein 94 isoform X11 OS=Cricetulus griseus OX=10029 GN=Tmem94 PE=4 SV=1 CANONICAL=A0A9J7GBS3-1" }, "locus": {} }, { "isoform_ac": "G3GTE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3/entry#G3GTE3-1", "sequence": { "sequence": "MDLKEKHLGEPPLALGLSTRKALSVLKEQLEAVLEKHLKERKKCRTWKETWKSSFLHLNNRCSCFHWPGASLMLLAVLLLLCCYGGQPAGSHGVELVNASALFLLLLLNLILIGRQDRLKRQEVERRLRGIIDQIQDALRDGKEIKWPNAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVKKGPQNPQQHRLFRVLQTPVIDNIRWCLDTALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRFMFNAPGVTSWQYTLLQLQVNGMLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAKFSEDTLSSYTESVSSQEMLRCIWGHFLRVIQGTSPTLSHSASLLHSLGSVTVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDDLSTRSFCHPEVEEEPHERDALLAGSLNNTLHLSNEQEHGDWPSDGPKPSEPYSHHKVYGRSKHPSGSNVSFSRDTEGGEEEPGKTQPGTEGEHYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCNASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPSAETVKETSLGRPSCVTKRRPPLSHMISLFIKDTATSTEQMLSHGTADVVLEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMSCSLSSQLNGKCIELVQAPGQSSIFTMCELPSTVPIKPNIRRNSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHVSLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLLLEEEGHSDLISFQPTDSDIPSFLEDCNRAKLPRGIHQVRPHLQNIDNVPLLVPLFTDCTPDTMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDVSIALDPLYPSRCSWETFGYATSTTMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVIIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFTLQSFCDSARARNLTNCSSVMLCSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTVVDLQLWTHRDTRVHFGLEDVPLLTWLLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF", "length": 1360, "header": "tr|G3GTE3-1|A0A9J7GBS3_CRIGR Computationally mapped isoform of Transmembrane protein 94 isoform X9 OS=Cricetulus griseus OX=10029 GN=Tmem94 PE=4 SV=1 CANONICAL=A0A9J7GBS3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTE3", "url": "https://www.uniprot.org/uniprotkb/G3GTE3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTE3", "url": "https://www.uniprot.org/uniprotkb/G3GTE3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769338", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769338", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "P-type magnesium transporter activity", "id": "GO:0015444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015444", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "magnesium ion transport from cytosol to endoplasmic reticulum", "id": "GO:0160176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160176", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1229, "end_pos": 1231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1232, "end_pos": 1234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 1229, "end_pos": 1231 }, { "start_pos": 1232, "end_pos": 1234 }, { "start_pos": 502, "end_pos": 504 }, { "start_pos": 543, "end_pos": 545 }, { "start_pos": 622, "end_pos": 624 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIB8-1", "uniprot_ac": "A0A9J7GIB8", "uniprot_id": "A0A9J7GIB8_CRIGR", "mass": { "chemical_mass": 11086.0, "monoisotopic_mass": 11086.0 }, "refseq": { "ac": "XP_027286414", "name": "28S ribosomal protein S21, mitochondrial-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286414" }, "gene_names": [ { "name": "LOC100762230", "type": "recommended", "evidence": [ { "id": "A0A9J7GIB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8" } ] }, { "name": "Mrps21", "type": "recommended", "evidence": [ { "id": "A0A9J7GIB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8" } ] }, { "name": "LOC100762230", "type": "synonym", "evidence": [ { "id": "XP_027286414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286414" } ] } ], "protein_names": [ { "name": "28S ribosomal protein S21, mitochondrial-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286414" }, { "id": "A0A9J7GIB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286414" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIB8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIB8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761829", "url": "https://www.ncbi.nlm.nih.gov/gene/100761829", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100762230", "url": "https://www.ncbi.nlm.nih.gov/gene/100762230", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761829", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761829", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:100762230", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRHAQFL", "url": "https://omabrowser.org/oma/group/MRHAQFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GIB8", "url": "https://www.orthodb.org/?gene=A0A9J7GIB8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H2V9", "url": "https://www.orthodb.org/?gene=G3H2V9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21109", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21109", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21109:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21109:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286414", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H2V9", "url": "https://www.uniprot.org/uniprotkb/G3H2V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H2V9-1", "url": "https://www.uniprot.org/uniprotkb/G3H2V9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKHLKFIARAVMVPEGNVQGAYRTLNQILTTDRLTEVIKQRRYYEKHCRRRQRESYETCQRICNMEMARKINFLMWKNRADPWLSKLNHT", "length": 91, "header": "tr|A0A9J7GIB8-1|A0A9J7GIB8_CRIGR Isoform 1 of 28S ribosomal protein S21, mitochondrial-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762230 PE=3 SV=1 CANONICAL=A0A9J7GIB8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8/entry#A0A9J7GIB8-1", "sequence": { "sequence": "MAKHLKFIARAVMVPEGNVQGAYRTLNQILTTDRLTEVIKQRRYYEKHCRRRQRESYETCQRICNMEMARKINFLMWKNRADPWLSKLNHT", "length": 91, "header": "tr|A0A9J7GIB8-1|A0A9J7GIB8_CRIGR Isoform 1 of 28S ribosomal protein S21, mitochondrial-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762230 PE=3 SV=1 CANONICAL=A0A9J7GIB8-1" }, "locus": {} }, { "isoform_ac": "G3H2V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIB8/entry#G3H2V9-1", "sequence": { "sequence": "MAKHLKFIARTVMVQDGNVEGAYRTLTRILATDGLTEVINRRRYYEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWQGS", "length": 87, "header": "tr|G3H2V9-1|A0A9J7GIB8_CRIGR Computationally mapped isoform of 28S ribosomal protein S21, mitochondrial-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762230 PE=3 SV=1 CANONICAL=A0A9J7GIB8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H2V9", "url": "https://www.uniprot.org/uniprotkb/G3H2V9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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"MIPAAAGAARARGTARETLGSPAERGGGRTGRRGVLEPRARLCFPCLLGGDTQGSSDRRRTPRSEGKGRTKKDQMAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQGNPDGDGDRCPHGSPQGPLAPPASPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPADIRPEIWIAQELRRIGDEFNESYRRRANNYQEDEDHPHHPQMVILQLLRFIVRLVWRRH", "length": 271, "header": "tr|A0A9J7GB91-1|A0A9J7GB91_CRIGR Isoform 1 of Bcl-2-like protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Bcl2l11 PE=4 SV=1 CANONICAL=A0A9J7GB91-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QK28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91/entry#A0A8C2QK28-1", "sequence": { "sequence": "MAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQGNPDGDGDRCPHGSPQGPLAPPASPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPADIRPEIWIAQELRRIGDEFNESYRRRANNYQEDEDHPHHPQMVILQLLRFIVRLVWRRH", "length": 197, "header": "tr|A0A8C2QK28-1|A0A9J7GB91_CRIGR Computationally mapped isoform of Bcl-2-like protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Bcl2l11 PE=4 SV=1 CANONICAL=A0A9J7GB91-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91/entry#A0A9J7G6U4-1", "sequence": { "sequence": "MIPAAAGAARARGTARETLGSPAERGGGRTGRRGVLEPRARLCFPCLLGGDTQGSSDRRRTPRSEGKGRTKKDQMAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPADIRPEIWIAQELRRIGDEFNESYRRRANNYQEDEDHPHHPQMVILQLLRFIVRLVWRRH", "length": 215, "header": "tr|A0A9J7G6U4-1|A0A9J7GB91_CRIGR Computationally mapped isoform of Bcl-2-like protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Bcl2l11 PE=4 SV=1 CANONICAL=A0A9J7GB91-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB91-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91/entry#A0A9J7GB91-1", "sequence": { "sequence": "MIPAAAGAARARGTARETLGSPAERGGGRTGRRGVLEPRARLCFPCLLGGDTQGSSDRRRTPRSEGKGRTKKDQMAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQGNPDGDGDRCPHGSPQGPLAPPASPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPADIRPEIWIAQELRRIGDEFNESYRRRANNYQEDEDHPHHPQMVILQLLRFIVRLVWRRH", "length": 271, "header": "tr|A0A9J7GB91-1|A0A9J7GB91_CRIGR Isoform 1 of Bcl-2-like protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Bcl2l11 PE=4 SV=1 CANONICAL=A0A9J7GB91-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK28", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK28" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK28", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK28" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771754", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771754", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1VSJ0-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTERQGNPEGEGDRCPQGSPQGPLAPPTSPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQSQAEPADMRPEIWIAQELRRIGDEFNAYYPRRVFLNNYQAAEAHPQMVILRLLRYIARLVWRMQ", "length": 196 }, "evidence": [ { "id": "A0A9J7GB91", "url": "https://omabrowser.org/oma/group/A0A9J7GB91/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O43521-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "BCL2L11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPRMVILRLLRYIVRLVWRMH", "length": 198 }, "evidence": [ { "id": "A0A9J7GB91", "url": "https://omabrowser.org/oma/group/A0A9J7GB91/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O54918-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "Bcl2l11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQGNPDGEGDRCPHGSPQGPLAPPASPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPEDLRPEIRIAQELRRIGDEFNETYTRRVFANDYREAEDHPQMVILQLLRFIFRLVWRRH", "length": 196 }, "evidence": [ { "id": "A0A9J7GB91", "url": "https://omabrowser.org/oma/group/A0A9J7GB91/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O88498-1", "protein_name": "Bcl-2-like protein 11", "gene_name": "Bcl2l11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKQPSDVNSECDREGGQLQPAERPPQLRPGAPTSLQTESQGNPDGEGDRCPHGSPQGPLAPPASPGPFATRSPLFIFVRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASIRQSQEEPEDLRPEIRIAQELRRIGDEFNETYTRRAFANDYREAEDHPQMVILQLLRFIFRLVWRRH", "length": 196 }, "evidence": [ { "id": "A0A9J7GB91", "url": "https://omabrowser.org/oma/group/A0A9J7GB91/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": 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"UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "positive regulation of protein-containing complex assembly", "id": "GO:0031334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031334", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "positive regulation of release of cytochrome c from mitochondria", "id": "GO:0090200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090200", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "response to endoplasmic reticulum stress", "id": "GO:0034976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034976", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "positive regulation of fibroblast apoptotic process", "id": "GO:2000271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" }, { "name": "meiosis I", "id": "GO:0007127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GB91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" }, { "id": "PF06773", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06773" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Apoptosis Bim N-terminal", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 114, "start_aa": "Gln", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GB91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB91" }, { "id": "PF08945", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08945" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bcl-x interacting BH3", "eco_id": "ECO_0000259", "start_pos": 203, "end_pos": 238, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GB38-1", "uniprot_ac": "A0A9J7GB38", "uniprot_id": "A0A9J7GB38_CRIGR", "mass": { "chemical_mass": 65089.0, "monoisotopic_mass": 65089.0 }, "refseq": { "ac": "XP_027277538", "name": "spermine oxidase isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277538" }, "gene_names": [ { "name": "Smox", "type": "recommended", "evidence": [ { "id": "A0A9J7GB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ] }, { "name": "Smox", "type": "synonym", "evidence": [ { "id": "XP_027277538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277538" } ] } ], "protein_names": [ { "name": "Spermine oxidase isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7GB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38/entry#names_and_taxonomy" } ] }, { "name": "spermine oxidase isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027277538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277538" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277538" } ] }, { "annotation": "Flavoenzyme which catalyzes the oxidation of spermine to spermidine. Can also use N(1)-acetylspermine and spermidine as substrates, with different affinity depending on the isoform (isozyme) and on the experimental conditions. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs. May contribute to beta-alanine production via aldehyde dehydrogenase conversion of 3-amino-propanal.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8J8#function" }, { "database": "UniProtKB", "id": "ARBA00057555", "url": "https://www.uniprot.org/uniprotkb/ARBA00057555#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smox", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38", "locus": {} } ], "crossref": [ { "id": "A0A9J7GB38", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GB38", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763379", "url": "https://www.ncbi.nlm.nih.gov/gene/100763379", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763379", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763379", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GB38", "url": "https://www.orthodb.org/?gene=A0A9J7GB38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10742:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10742:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01593", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277538", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "25804", "url": "https://www.rhea-db.org/rhea/25804", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G6J9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6J9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6J9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASRHIGGRVQSVRLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISHYSKNGVACYLTNRGRRVPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWTEIPGAHHIIPSGFVRVVELLAEGIPPHVIQLGKPVRCIHWDQASARPRGPEIEPCGEGDHNRNTGEGGQSGESSQQRRRDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNVPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAHGSSTKQQPAHLLSSKCPEQALDPSRGPVKPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP", "length": 585, "header": "tr|A0A9J7GB38-1|A0A9J7GB38_CRIGR Isoform 1 of Spermine oxidase isoform X3 OS=Cricetulus griseus OX=10029 GN=Smox PE=4 SV=1 CANONICAL=A0A9J7GB38-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G6J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38/entry#A0A9J7G6J9-1", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASRHIGGRVQSVRLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISHYSKNGVACYLTNRGRRVPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWTEIPGAHHIIPSGFVRVVELLAEGIPPHVIQLGKPVRCIHWDQASARPRGPEIEPCGEGDHNRNTGEGGQSGESSQQRRRDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNVPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAGSGVFRAEETKVHRRTSVELPQATQLRDMLSH", "length": 542, "header": "tr|A0A9J7G6J9-1|A0A9J7GB38_CRIGR Computationally mapped isoform of Spermine oxidase isoform X3 OS=Cricetulus griseus OX=10029 GN=Smox PE=4 SV=1 CANONICAL=A0A9J7GB38-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38/entry#A0A9J7G8J8-1", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASRHIGGRVQSVRLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISHYSKNGVACYLTNRGRRVPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWTEIPGAHHIIPSGFVRVVELLAEGIPPHVIQLGKPVRCIHWDQASARPRGPEIEPCGEGDHNRNTGEGGQSGESSQQRRRDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNVPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP", "length": 555, "header": "tr|A0A9J7G8J8-1|A0A9J7GB38_CRIGR Computationally mapped isoform of Spermine oxidase isoform X3 OS=Cricetulus griseus OX=10029 GN=Smox PE=4 SV=1 CANONICAL=A0A9J7GB38-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38/entry#A0A9J7GB38-1", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASRHIGGRVQSVRLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISHYSKNGVACYLTNRGRRVPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWTEIPGAHHIIPSGFVRVVELLAEGIPPHVIQLGKPVRCIHWDQASARPRGPEIEPCGEGDHNRNTGEGGQSGESSQQRRRDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNVPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAHGSSTKQQPAHLLSSKCPEQALDPSRGPVKPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP", "length": 585, "header": "tr|A0A9J7GB38-1|A0A9J7GB38_CRIGR Isoform 1 of Spermine oxidase isoform X3 OS=Cricetulus griseus OX=10029 GN=Smox PE=4 SV=1 CANONICAL=A0A9J7GB38-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8J8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8J8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763379", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763379", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermine catabolic process", "id": "GO:0046208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046208", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "spermine oxidase activity", "id": "GO:0052901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052901", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "pmid": "" }, { "name": "polyamine oxidase activity", "id": "GO:0046592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "25804", "name": "", "equation": "spermine + O2 + H2O = 3-aminopropanal + spermidine + H2O2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A9J7GB38-1" ], "evidence": [ { "id": "25804", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25804" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A9J7GB38", "gene_name": "Smox", "activity": [ { "ec_number": "1.5.3.16", "activity": "norspermine + O2 + H2O = norspermidine + 3-aminopropanal + H2O2.", "evidence": [ { "id": "A0A9J7GB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ] }, { "ec_number": "1.5.3.16", "activity": "", "evidence": [ { "id": "A0A9J7GB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB38" }, { "id": "PF01593", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amine oxidase", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 268, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "1.5.3.16", "ec_name": "norspermine + O2 + H2O = norspermidine + 3-aminopropanal + H2O2.", "evidence": [ { "id": "1.5.3.16", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:1.5.3.16" }, { "id": "1.5.3.16", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=1.5.3.16" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GHH2-1", "uniprot_ac": "A0A9J7GHH2", "uniprot_id": "A0A9J7GHH2_CRIGR", "mass": { "chemical_mass": 42338.0, "monoisotopic_mass": 42338.0 }, "refseq": { "ac": "XP_003501318", "name": "germ cell-specific gene 1 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501318" }, "gene_names": [ { "name": "Gsg1", "type": "recommended", "evidence": [ { "id": "A0A9J7GHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2" } ] }, { "name": "Gsg1", "type": "synonym", "evidence": [ { "id": "XP_003501318", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501318" } ] } ], "protein_names": [ { "name": "Germ cell-specific gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2/entry#names_and_taxonomy" } ] }, { "name": "germ cell-specific gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003501318", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501318" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613840.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501318", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501318" } ] }, { "annotation": "May cause the redistribution of PAPOLB from the cytosol to the endoplasmic reticulum.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRB2#function" }, { "database": "UniProtKB", "id": "ARBA00056393", "url": "https://www.uniprot.org/uniprotkb/ARBA00056393#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gsg1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752816", "url": "https://www.ncbi.nlm.nih.gov/gene/100752816", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752816", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752816", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHH2", "url": 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"MSNPSQLTQNVCLTQEMELQKDSPLQRTFISAILNMLSLGLSATSLLSSEWFVGTQKVPKPLCGQGLAAKCFDMPMSLDGVVTNASAPEMVQYTWETGDDRFSFLTFRSGMWLSCEETMEEPGEKCRSFIELTPPAQRGEKGLLEFATLQGSYHPTLRFGREWLMEKASPLHLPLGPVTKVLWFSLGTQIAYIGLQFISFLLLLTDLLLTGNPGCGLKLSAFSAISLVLSGLLGMVAHMMYSQVFQATANLGPDDWRPHSWNYGWAFYMAWVSFTCCMASAVTTFNTYTRMMLEFQCRRRKSFNPNPSRIDHHHRCFLPQLACAAQEGGPLTSCHQCPNHPIRSVSEGIDLYSALQDKEFQQETSQELKVAGSSIEEQC", "length": 379, "header": "tr|A0A9J7GHH2-1|A0A9J7GHH2_CRIGR Isoform 1 of Germ cell-specific gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Gsg1 PE=3 SV=1 CANONICAL=A0A9J7GHH2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2/entry#A0A9J7GHH2-1", "sequence": { "sequence": 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"header": "tr|A0A9J7K0S0-1|A0A9J7K0S0_CRIGR Computationally mapped isoform of Germ cell-specific gene 1 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Gsg1 PE=3 SV=1 CANONICAL=A0A9J7GHH2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRB2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752816", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752816", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287441" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103158860", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJ86", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJ86", "database": "AlphaFoldDB", "categories": [] }, { "id": "103158860", "url": "https://www.ncbi.nlm.nih.gov/gene/103158860", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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CANONICAL=A0A9J7GJ86-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86/entry#A0A9J7GJ86-1", "sequence": { "sequence": "MNIDVEFHIRHNYPWSKLPLTMSQSLGNSQREYEKQVVLYSIRNQLRYRNNLVKHVKKDERKYYEELLKYSRDHLMLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLGIGRNQYIDLMNQCRSSKKFFRRKTARDLLPVKPVETAIEAWWVVQAGYITEDDIKICTFPEKGAIDKLIDSGPQLSGSLDYNVVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRLKSTLDPQKMLLSWDGGESRSPVQEASSATDTDTNSQEDPADTASVSSLSLSTGYTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTILFLRHNKDLVAQTSQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPVSSCTPQHIGPAIPEVSSVWFKLYIYHVTGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGVGETVHIPFPFDEAELQGAFTRASMGAHKALQTLRDKVDLQHFCGYVTMLNASSQLASRKLSDASDERGEPDLASGSDVNGSTESFEMVIEEATTDSAIKQNSGATAEADWVPLELCFGIPLFSSELNRKVCQKIATHGLCSRESLQSLLHSSRKLSLQVLNFVHSFQEGASTLDLHTEPGFPSVLSQSSWADTGVPLPAKNLMFKDGLLSEWSGRSPSSFLLANLHLQ", "length": 838, "header": "tr|A0A9J7GJ86-1|A0A9J7GJ86_CRIGR Isoform 1 of Protein FAM91A1 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC103158860 PE=3 SV=1 CANONICAL=A0A9J7GJ86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JS58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86/entry#A0A9J7JS58-1", "sequence": { "sequence": "MIHCLILLLPTVSIQLLRGLRLLGIGRNQYIDLMNQCRSSKKFFRRKTARDLLPVKPVETAIEAWWVVQAGYITEDDIKICTFPEKGAIDKLIDSGPQLSGSLDYNVVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRLKSTLDPQKMLLSWDGGESRSPVQEASSATDTDTNSQEDPADTASVSSLSLSTGYTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTILFLRHNKDLVAQTSQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPVSSCTPQHIGPAIPEVSSVWFKLYIYHVTGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGVGETVHIPFPFDEAELQGAFTRASMGAHKALQTLRDKVDLQHFCGYVTMLNASSQLASRKLSDASDERGEPDLASGSDVNGSTESFEMVIEEATTDSAIKQNSGATAEADWVPLELCFGIPLFSSELNRKVCQKIATHGLCSRESLQSLLHSSRKLSLQVLNFVHSFQEGASTLDLHTEPGFPSVLSQSSWADTGVPLPAKNLMFKDGLLSEWSGRSPSSFLLANLHLQ", "length": 734, "header": "tr|A0A9J7JS58-1|A0A9J7GJ86_CRIGR Computationally mapped isoform of Protein FAM91A1 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC103158860 PE=3 SV=1 CANONICAL=A0A9J7GJ86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K088-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86/entry#A0A9J7K088-1", "sequence": { "sequence": "MLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLGIGRNQYIDLMNQCRSSKKFFRRKTARDLLPVKPVETAIEAWWVVQAGYITEDDIKICTFPEKGAIDKLIDSGPQLSGSLDYNVVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRLKSTLDPQKMLLSWDGGESRSPVQEASSATDTDTNSQEDPADTASVSSLSLSTGYTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTILFLRHNKDLVAQTSQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPVSSCTPQHIGPAIPEVSSVWFKLYIYHVTGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGVGETVHIPFPFDEAELQGAFTRASMGAHKALQTLRDKVDLQHFCGYVTMLNASSQLASRKLSDASDERGEPDLASGSDVNGSTESFEMVIEEATTDSAIKQNSGATAEADWVPLELCFGIPLFSSELNRKVCQKIATHGLCSRERCR", "length": 681, "header": "tr|A0A9J7K088-1|A0A9J7K088_CRIGR Computationally mapped isoform of Protein FAM91A1 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC103158860 PE=3 SV=1 CANONICAL=A0A9J7GJ86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86/entry#A0A9J7K1R0-1", "sequence": { "sequence": "MLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLGIGRNQYIDLMNQCRSSKKFFRRKTARDLLPVKPVETAIEAWWVVQAGYITEDDIKICTFPEKGAIDKLIDSGPQLSGSLDYNVVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRLKSTLDPQKMLLSWDGGESRSPVQEASSATDTDTNSQEDPADTASVSSLSLSTGYTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTILFLRHNKDLVAQTSQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPVSSCTPQHIGPAIPEVSSVWFKLYIYHVTGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGVGETVHIPFPFDEAELQGAFTRASMGAHKALQTLRDKVDLQHFCGYVTMLNASSQLASRKLSDASDERGEPDLASGSDVNGSTESFEMVIEEATTDSAIKQNSGATAEADWVPLELCFGIPLFSSELNRKVCQKIATHGLCSRESHESWHALLFLGMKLL", "length": 694, "header": "tr|A0A9J7K1R0-1|A0A9J7K1R0_CRIGR Computationally mapped isoform of Protein FAM91A1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC103158860 PE=3 SV=1 CANONICAL=A0A9J7GJ86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS58" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS58" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103158860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158860", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" } ], "pmid": "" }, { "name": "vesicle tethering to Golgi", "id": "GO:0099041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099041", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 660, "end_pos": 662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 689, "end_pos": 691, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" }, { "id": "PF14648", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14648" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM91 C-terminal", "eco_id": "ECO_0000259", "start_pos": 375, "end_pos": 820, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GJ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ86" }, { "id": "PF14647", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14647" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM91 N-terminal", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 312, "start_aa": "His", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 497, "end_pos": 499 }, { "start_pos": 660, "end_pos": 662 }, { "start_pos": 689, "end_pos": 691 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GC22-1", "uniprot_ac": "A0A9J7GC22", "uniprot_id": "A0A9J7GC22_CRIGR", "mass": { "chemical_mass": 113433.0, "monoisotopic_mass": 113433.0 }, "refseq": { "ac": "XP_027281634", "name": "centrosomal protein of 112 kDa isoform X14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281634" }, "gene_names": [ { "name": "Cep112", "type": "recommended", "evidence": [ { "id": "A0A9J7GC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22" } ] }, { "name": "Cep112", "type": "synonym", "evidence": [ { "id": "XP_027281634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281634" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 112 kDa isoform X14", "type": "synonym", "evidence": [ { "id": "A0A9J7GC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 112 kDa isoform X14", "type": "synonym", "evidence": [ { "id": "XP_027281634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281634" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281634" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GC22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep112", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22", "locus": {} } ], "crossref": [ { "id": "A0A9J7GC22", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GC22", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762658", "url": "https://www.ncbi.nlm.nih.gov/gene/100762658", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027831", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027831", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762658", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762658", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GC22", "url": "https://www.orthodb.org/?gene=A0A9J7GC22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18871:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18871:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14846", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14846", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2L9B1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2L9B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9B1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H264", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H264", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H264-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H264-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H356", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H356", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H356-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H356-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4G5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H682", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H682", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H682-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H682-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 961, "header": "tr|A0A9J7GC22-1|A0A9J7GC22_CRIGR Isoform 1 of Centrosomal protein of 112 kDa isoform X14 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "isoforms": [ { "isoform_ac": "A0A8C2L9B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A8C2L9B1-1", "sequence": { "sequence": "MEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 954, "header": "tr|A0A8C2L9B1-1|A0A9J7GC22_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X14 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7GC22-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 961, "header": "tr|A0A9J7GC22-1|A0A9J7GC22_CRIGR Isoform 1 of Centrosomal protein of 112 kDa isoform X14 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC34-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7GC34-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLLDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 935, "header": "tr|A0A9J7GC34-1|A0A9J7GC34_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X16 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H264-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7H264-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLLDMRTKMMEAKFYEEKLKLQQKHDADVQKILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 900, "header": "tr|A0A9J7H264-1|A0A9J7H264_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X18 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H356-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7H356-1", "sequence": { "sequence": "MCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 613, "header": "tr|A0A9J7H356-1|A0A9J7H356_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X22 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7H4G5-1", "sequence": { "sequence": "MEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 955, "header": "tr|A0A9J7H4G5-1|A0A9J7H4G5_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X15 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H682-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7H682-1", "sequence": { "sequence": "MSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 784, "header": "tr|A0A9J7H682-1|A0A9J7H682_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X21 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JP04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7JP04-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQIIAELQTTISSLKEESSRQQLAAERRLQDAIQKFEDEKQQLIRDNDQAIKALQDELETRCNQVRSAEKKLQHKELEAQEQITYIRQEYEIKLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGRR", "length": 926, "header": "tr|A0A9J7JP04-1|A0A9J7JP04_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X17 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7JWI8-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKLFFRYFIPAIYKVTNTRDYLK", "length": 825, "header": "tr|A0A9J7JWI8-1|A0A9J7JWI8_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X20 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22/entry#A0A9J7JY35-1", "sequence": { "sequence": "MCPEPIMEMESEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIKKLCEPSGSGAGLMGRKNRNLYAKLLLHMLRRGVLEGPFTQRPEPGTLKTLPSYMSIYFDEPNPAQPKGSSPEKLPDWVMGELETGEPKLSESWQSSSGEDNMLVLSTCDAHSREQYTGKLQTRSHSMSSTYKEDRKHIASKIFEAHSKESPVSLDDSDIEARLNSWNLGIENPRYLRQKPLPVSLITPKVSLKKSSSIHDDHFLSQMHEKELDMRTKMMEAKFYEEKLKLQQKHDADVQKILERKNNELEDLKILYRKKQAENDESVRKLEKKVQILIRDCQVIRETKENQIAELKKMCEQSTECLNNDWEKKLHSAVAEMEKEKFELQKRHTETIQELLEDTNMRLNKMEGDYMVQTQSTNHMIKELEGRVQQLTGEAENSNLQRQKLIQEKLELERCYQMTCSELQELKTRRNILHKEKEHLASDYEKNMKLLKTKYDSDLNLLKQEHELSVSKTSGVIEKLEQNICQLKQQIQESELQRKQQTKDQENKFHMERNHLKHTYDKKVHELQSELDKEKEGTQRKIHKFEEVLKEKEEQLSRMTEVQRSQAQQADAALEEFKRQVEVNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIKHRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQESKKRDAQVIADMETQVHKLRGELINVNSQRKQQLVELGLLREEEKQRAARDHETAVNKLKAESERVKMELKRTHAAETEMTLEKANSRLKQIEKEYTQKLSKSSQRNNHFLLSKTILAAVEIERKWLHPKQRKRYTLSGPIAFLIRC", "length": 867, "header": "tr|A0A9J7JY35-1|A0A9J7JY35_CRIGR Computationally mapped isoform of Centrosomal protein of 112 kDa isoform X19 OS=Cricetulus griseus OX=10029 GN=Cep112 PE=4 SV=1 CANONICAL=A0A9J7GC22-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2L9B1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9B1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2L9B1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9B1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762658", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762658", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC22" }, { "id": "PF14846", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4485", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 104, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GB00-1", "uniprot_ac": "A0A9J7GB00", "uniprot_id": "A0A9J7GB00_CRIGR", "mass": { "chemical_mass": 128450.0, "monoisotopic_mass": 128450.0 }, "refseq": { "ac": "XP_027281477", "name": "caskin-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281477" }, "gene_names": [ { "name": "Caskin2", "type": "recommended", "evidence": [ { "id": "A0A9J7GB00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" } ] }, { "name": "Caskin2", "type": "synonym", "evidence": [ { "id": "XP_027281477", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281477" } ] } ], "protein_names": [ { "name": "Caskin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GB00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00/entry#names_and_taxonomy" } ] }, { "name": "caskin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281477", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281477" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281477", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281477" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Caskin2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00", "locus": {} } ], "crossref": [ { "id": "cd09497", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09497", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09498", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09498", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769048", "url": "https://www.ncbi.nlm.nih.gov/gene/100769048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032117", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032117", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035498", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035498", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769048", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769048", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GB00", "url": "https://www.orthodb.org/?gene=A0A9J7GB00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24174", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24174", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24174:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24174:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16907", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16907", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281477", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281477", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HB06", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HB06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HB06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LJ90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LJ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGREQDLILAVKNGDVTCVQKLVAKVKAAKTSKSLNSSEPWDPGLQKLLGSTKRLNINYQDADGFSALHHAALGGSLELIALLLEAQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRVGYFPPGIVEVVSKRAGIPVARLPSAPTLLRPSFSRMSQPSPDDPLQSLTYGQLSRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHSTGLLIENAQPLPSASEDQVLSGLHAPSLADNLSHRPLASYRSGETFTQDVRPEQLLEGKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPVDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVRRLAELRRGLLHGEALGEGGRRLTRGPELMAIEGLENGEGPAVSGPRLLTFQGSELSPELQAAMAGGGPEPLPIPPARSPSQESIGARSRGSGHSQEQPVSQPSIGDPSAPQERNLPEGTERPSKLCPPLPGQGPAPYVFMCPQSSPSSPAPGPPPGAPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRCTLSRTSPSLTPIRGTPRSQSFALRARRKGPPPPPPKRLSSVSGPTEPPSLEGSPGPKEGATGSRRRTLSEPTGPSEPPGPSAPTGPVSDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVLPGLDFNLTESDTVKRRPKCKEREPLQTALLAFGVVGGDTPSPSPPLASQDPCESPPTSPNPPRSEPSSLPPQGTPAPSLSPKSQPPGHQGTSVGPALATGNRLGAETEPPAAPAALLKVPGAGTTPKPVSVACTQLVFSGPKLAARLGPRPVPPPRPESTGPVCPGRAQQRLEQTSSSLAAALRAAEKSIGTEEQEGPTAASTKHILDDISTMFDALADQLDAMLD", "length": 1214, "header": "tr|A0A9J7GB00-1|A0A9J7GB00_CRIGR Isoform 1 of Caskin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Caskin2 PE=4 SV=1 CANONICAL=A0A9J7GB00-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00/entry#A0A3L7HB06-1", "sequence": { "sequence": "MGREQDLILAVKNGDVTCVQKLVAKVKAAKTKLLGSTKRLNINYQDADGFSALHHAALGGSLELIALLLEAQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRVGYFPPGIVEVVSKRAGIPVARLPSAPTLLRPSFSRMSQPSPDDPLQSLTYGQLSRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHSTGLLIENAQPLPSASEDQVLSGLHAPSLADNLSHRPLASYRSGETFTQDVRPEQLLEGKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPVDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVRRLAELRRGLLHGEALGEGGRRLTRGPELMAIEGLENGEGPAVSGPRLLTFQGSELSPELQAAMAGGGPEPLPIPPARSPSQESIGARSRGSGHSQEQPVSQPSIGDPSAPQERNLPEGTERPSKLCPPLPGQGPAPYVFMCPQSSPSSPAPGPPPGAPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRCTLSRTSPSLTPIRGTPRSQSFALRARRKGPPPPPPKRLSSVSGPTEPPSLEGSPGPKEGATGSRRRTLSEPTGPSEPPGPSAPTGPVSDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVLPGLDFNLTESDTVKRRPKCKEREPLQTALLAFGVVGGDTPSPSPPLASQDPCESPPTSPNPPRSEPSSLPPQGTPAPSLSPKSQPPGHQGTSVGPALATGNRLGAETEPPAAPAALLKVPGAGTTPKPVSVACTQLVFSGPKLAARLGPRPVPPPRPESTGPVCPGRAQQRLEQTSSSLAAALRAAEKSIGTEEQEGPTAASTKHILDDISTMFDALADQLDAMLD", "length": 1199, "header": "tr|A0A3L7HB06-1|A0A3L7HB06_CRIGR Computationally mapped isoform of Caskin-2 OS=Cricetulus griseus OX=10029 GN=Caskin2 PE=4 SV=1 CANONICAL=A0A9J7GB00-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LJ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00/entry#A0A8C2LJ90-1", "sequence": { "sequence": "MGQVLFCTPKELLGSTKRLNINYQDADGFSALHHAALGGSLELIALLLEAQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRVGYFPPGIVEVVSKRAGIPVARLPSAPTLLRPSFSRMSQPSPDDPLQSLTYGQLSRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHSTGLLIENAQPLPSASEDQVLSGLHAPSLADNLSHRPLASYRSGETFTQDVRPEQLLEGKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPVDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVRRLAELRRGLLHGEALGEGGRRLTRGPELMAIEGLENGEGPAVSGPRLLTFQGSELSPELQAAMAGGGPEPLPIPPARSPSQESIGARSRGSGHSQEQPVSQPSIGDPSAPQERNLPEGTERPSKLCPPLPGQGPAPYVFMCPQSSPSSPAPGPPPGAPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRCTLSRTSPSLTPIRGTPRSQSFALRARRKGPPPPPPKRLSSVSGPTEPPSLEGSPGPKEGATGSRRRTLSEPTGPSEPPGPSAPTGPVSDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVLPGLDFNLTESDTVKRRPKCKEREPLQTALLAFGVVGGDTPSPSPPLASQDPCESPPTSPNPPRSEPSSLPPQGTPAPSLSPKSQPPGHQGTSVGPALATGNRLGAETEPPAAPAALLKVPGAGTTPKPVSVACTQLVFSGPKLAARLGPRPVPPPRPESTGPVCPGRAQQRLEQTSSSLAAALRAAEKSIGTEEQEGPTAASTKHILDDISTMFDALADQLDAMLD", "length": 1178, "header": "tr|A0A8C2LJ90-1|A0A9J7GB00_CRIGR Computationally mapped isoform of Caskin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Caskin2 PE=4 SV=1 CANONICAL=A0A9J7GB00-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00/entry#A0A9J7GB00-1", "sequence": { "sequence": "MGREQDLILAVKNGDVTCVQKLVAKVKAAKTSKSLNSSEPWDPGLQKLLGSTKRLNINYQDADGFSALHHAALGGSLELIALLLEAQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRVGYFPPGIVEVVSKRAGIPVARLPSAPTLLRPSFSRMSQPSPDDPLQSLTYGQLSRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHSTGLLIENAQPLPSASEDQVLSGLHAPSLADNLSHRPLASYRSGETFTQDVRPEQLLEGKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPVDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVRRLAELRRGLLHGEALGEGGRRLTRGPELMAIEGLENGEGPAVSGPRLLTFQGSELSPELQAAMAGGGPEPLPIPPARSPSQESIGARSRGSGHSQEQPVSQPSIGDPSAPQERNLPEGTERPSKLCPPLPGQGPAPYVFMCPQSSPSSPAPGPPPGAPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRCTLSRTSPSLTPIRGTPRSQSFALRARRKGPPPPPPKRLSSVSGPTEPPSLEGSPGPKEGATGSRRRTLSEPTGPSEPPGPSAPTGPVSDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVLPGLDFNLTESDTVKRRPKCKEREPLQTALLAFGVVGGDTPSPSPPLASQDPCESPPTSPNPPRSEPSSLPPQGTPAPSLSPKSQPPGHQGTSVGPALATGNRLGAETEPPAAPAALLKVPGAGTTPKPVSVACTQLVFSGPKLAARLGPRPVPPPRPESTGPVCPGRAQQRLEQTSSSLAAALRAAEKSIGTEEQEGPTAASTKHILDDISTMFDALADQLDAMLD", "length": 1214, "header": "tr|A0A9J7GB00-1|A0A9J7GB00_CRIGR Isoform 1 of Caskin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Caskin2 PE=4 SV=1 CANONICAL=A0A9J7GB00-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1062, "start_aa": "Thr", "end_pos": 1062, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1062", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1187, "start_aa": "Thr", "end_pos": 1187, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1187", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 895, "start_aa": "Thr", "end_pos": 895, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr895", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 950, "start_aa": "Thr", "end_pos": 950, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr950", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LJ90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ90" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LJ90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ90" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769048", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769048", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 968, "end_pos": 970, "annotation": "n_glycosylation_sequon" }, { "start_pos": 994, "end_pos": 996, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GB00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 503, "end_pos": 566, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GB00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB00" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 296, "end_pos": 362, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 895, 950, 1062, 1187 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 36, "end_pos": 38 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 968, "end_pos": 970 }, { "start_pos": 994, "end_pos": 996 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GHF4-1", "uniprot_ac": "A0A9J7GHF4", "uniprot_id": "A0A9J7GHF4_CRIGR", "mass": { "chemical_mass": 71089.0, "monoisotopic_mass": 71089.0 }, "refseq": { "ac": "XP_027287040", "name": "HAUS augmin-like complex subunit 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287040" }, "gene_names": [ { "name": "Haus5", "type": "recommended", "evidence": [ { "id": "A0A9J7GHF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ] }, { "name": "Haus5", "type": "synonym", "evidence": [ { "id": "XP_027287040", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287040" } ] } ], "protein_names": [ { "name": "HAUS augmin-like complex subunit 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287040", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287040" }, { "id": "A0A9J7GHF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287040", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287040" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Haus5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751456", "url": "https://www.ncbi.nlm.nih.gov/gene/100751456", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751456", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751456", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHF4", "url": "https://www.orthodb.org/?gene=A0A9J7GHF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28588", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28588", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28588:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28588:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14817", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14817", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287040", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287040", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LXI1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MEDLRQKVRELSRWAAEEMEAPRAAVPGEPALRRMCLGQGADIWAYIVQHVRSQRSVKTVRGNLLWYGHQDNSKVRRKLELEATVARLRAESQKLDQSLELMDQETEAQDMTIAQTLQSLKETQHRTLLLQAKGRAVQRQQCGLQGPMKRLQNQLSHLQDMQRKAKVDVAFGPPVSAAPALEPGVLCDVQTACSLRTQFLQNLLIPQARGGSILPQDDDHFRSSHQQWLSSVETLLTNHPAGHILAALKYLAAEREKEIWSLCSGDGLKEEAPSSPQAPEPSSSRQALPPVVHLIQEGWQAIGALYTERNVLLEEHQALTGRLQSLVEEVVGRHAPGSSERKALLLGLKCSGRKAELTSLRAQCQELKNAVGSRKLLLRELQAKQQQILRWRQLVEETQERIRLLIKDNSVSKTRLSQGPEEVLALMQQKVVPTSEAVAPQSQELLHCLKKEAQHLPHIQLGPLLRYHAKGLKPLSKSLPSIQQLHPATPRSCSHILLSHTLGLPVGKAPELLLPKAASLRQDLLFLQDQRDLQRGNLHVKTSLPLGPSTQELLQIKASQEKEQKEDMGQTLKKLEDLVTQSLEQIPKLQWLVGDWWEQPGQATLSGEPCQGLSLPQWQLRWAQACRALQQPNK", "length": 634, "header": "tr|A0A9J7GHF4-1|A0A9J7GHF4_CRIGR Isoform 1 of HAUS augmin-like complex subunit 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Haus5 PE=4 SV=1 CANONICAL=A0A9J7GHF4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LXI1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXI1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LXI1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXI1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751456", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751456", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "pmid": "" }, { "name": "HAUS complex", "id": "GO:0070652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070652", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "pmid": "" }, { "name": "spindle assembly", "id": "GO:0051225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051225", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283844" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgap27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4", "locus": {} } ], "crossref": [ { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04403", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04403", "database": "CDD", 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"MPWARAGEGLEPLSLSPRRGALPGCTVGPDFGGSSSGYPQGGAVAAMAADVEGDVYVLVEHPFEYTGKDGRRIAIQPNERYRLLRRSTEHWWHVRREPGGRPFYLPAQYVRELPALGDPAPAPAPQPSAPQPRPAIPEPLAYDYRFVSTTPVGADGSSTEPRGRASSLSGPARQRVGGPRSSLAPGGPACLYVRPAAPVRPAQSLDDLARGGTAPPAGLLGSAGRFKASSVAGSWVCPRPLARSDSENVYEAIPDVRCCPPREERPKQVDDPPEPVYANVEKQPRATSPRSAAAPPRLSPVWETHTDTGTGRPYYYNPDTGVTTWESPFEASEGATSPATSRTSVGSGESLTEWGQYWDEDSRRVFFYNSLTGETAWEDETEDLEEEPQEQLEMQPSLSPRSPGHQRPPTPETDYPELLASYPEEDYSPVGSFSDPDPTSPLTAPPGWSCHVTPDKQTLYTNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPVQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEGIEELSADMLQREEGEPGRVDFGSSERLGSWREEDVRQSAASPSLSPGGLESDLSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAELCERERSPVPRFVQQCIRTVEARGLDMDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLHDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLRPEMEEASMPMTMVFQNQVVELILQQCTDIFPPH", "length": 918, "header": "tr|A0A9J7GGS4-1|A0A9J7GGS4_CRIGR Isoform 1 of Rho GTPase-activating protein 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap27 PE=4 SV=1 CANONICAL=A0A9J7GGS4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4/entry#A0A8C2LZA7-1", "sequence": { "sequence": "MVDMIAKLARRQSRALRAQVDDPPEPVYANVEKQPRATSPRSAAAPPRLSPVWETHTDTGTGRPYYYNPDTGVTTWESPFEASEGATSPATSRTSVGSGESLTEWGQYWDEDSRRVFFYNSLTGETAWEDETEDLEEEPQEQLEMQPSLSPRSPGHQRPPTPETDYPELLASYPEEDYSPVGSFSDPDPTSPLTAPPGWSCHVTPDKQTLYTNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPVQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEGIEELSADMLQREEGEPGRVDFGSSERLGSWREEDVRQSAASPSLSPGGLESDLSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAELCERERSPVPRFVQQCIRTVEARGLDMDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLHDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLRPEMEEASMPMTMVFQNQVVELILQQCTDIFPPH", "length": 669, "header": "tr|A0A8C2LZA7-1|A0A9J7GGS4_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap27 PE=4 SV=1 CANONICAL=A0A9J7GGS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4/entry#A0A9J7GGS4-1", "sequence": { "sequence": "MPWARAGEGLEPLSLSPRRGALPGCTVGPDFGGSSSGYPQGGAVAAMAADVEGDVYVLVEHPFEYTGKDGRRIAIQPNERYRLLRRSTEHWWHVRREPGGRPFYLPAQYVRELPALGDPAPAPAPQPSAPQPRPAIPEPLAYDYRFVSTTPVGADGSSTEPRGRASSLSGPARQRVGGPRSSLAPGGPACLYVRPAAPVRPAQSLDDLARGGTAPPAGLLGSAGRFKASSVAGSWVCPRPLARSDSENVYEAIPDVRCCPPREERPKQVDDPPEPVYANVEKQPRATSPRSAAAPPRLSPVWETHTDTGTGRPYYYNPDTGVTTWESPFEASEGATSPATSRTSVGSGESLTEWGQYWDEDSRRVFFYNSLTGETAWEDETEDLEEEPQEQLEMQPSLSPRSPGHQRPPTPETDYPELLASYPEEDYSPVGSFSDPDPTSPLTAPPGWSCHVTPDKQTLYTNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPVQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEGIEELSADMLQREEGEPGRVDFGSSERLGSWREEDVRQSAASPSLSPGGLESDLSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAELCERERSPVPRFVQQCIRTVEARGLDMDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLHDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLRPEMEEASMPMTMVFQNQVVELILQQCTDIFPPH", "length": 918, "header": "tr|A0A9J7GGS4-1|A0A9J7GGS4_CRIGR Isoform 1 of Rho GTPase-activating protein 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap27 PE=4 SV=1 CANONICAL=A0A9J7GGS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4/entry#A0A9J7H2Y6-1", "sequence": { "sequence": "MPWARAGEGLEPLSLSPRRGALPGCTVGPDFGGSSSGYPQGGAVAAMAADVEGDVYVLVEHPFEYTGKDGRRIAIQPNERYRLLRRSTEHWWHVRREPGGRPFYLPAQYVRELPALGDPAPAPAPQPSAPQPRPAIPEPLAYDYRFVSTTPVGADGSSTEPRGRASSLSGPARQRVGGPRSSLAPGGPACLYVRPAAPVRPAQSLDDLARGGTAPPAGLLGSAGRFKASSVAGSWVCPRPLARSDSENVYEAIPDVRCCPPREERPKQVDDPPEPVYANVEKQPRATSPRSAAAPPRLSPVWETHTDTGTGRPYYYNPDTGVTTWESPFEASEGATSPATSRTSVGSGESLTEWGQYWDEDSRRVFFYNSLTGETAWEDETEDLEEEPQEQLEMQPSLSPRSPGHQRPPTPETDYPELLASYPEEDYSPVGSFSDPDPTSPLTAPPGWSCHVTPDKQTLYTNQFTQEQIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEGIEELSADMLQREEGEPGRVDFGSSERLGSWREEDVRQSAASPSLSPGGLESDLSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAELCERERSPVPRFVQQCIRTVEARGLDMDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLHDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLRPEMEEASMPMTMVFQNQVVELILQQCTDIFPPH", "length": 863, "header": "tr|A0A9J7H2Y6-1|A0A9J7H2Y6_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 27 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arhgap27 PE=4 SV=1 CANONICAL=A0A9J7GGS4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZA7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZA7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZA7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZA7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765871", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765871", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 526, "end_pos": 642, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 726, "end_pos": 915, "start_aa": "Cys", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 115, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS4" }, { "id": "PS50020", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WW", "eco_id": "ECO_0000259", "start_pos": 296, "end_pos": 330, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GFC5-1", "uniprot_ac": "A0A9J7GFC5", "uniprot_id": "A0A9J7GFC5_CRIGR", "mass": { "chemical_mass": 84253.0, "monoisotopic_mass": 84253.0 }, "refseq": { "ac": "XP_027282723", "name": "zinc finger MYND domain-containing protein 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282723" }, "gene_names": [ { "name": "Zmynd15", "type": "recommended", "evidence": [ { "id": "A0A9J7GFC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5" } ] }, { "name": "Zmynd15", "type": "synonym", "evidence": [ { "id": "XP_027282723", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282723" } ] } ], "protein_names": [ { "name": "Zinc finger MYND domain-containing protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GFC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger MYND domain-containing protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027282723", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282723" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282723" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmynd15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5", "locus": {} } ], "crossref": [ { "id": "100751418", "url": "https://www.ncbi.nlm.nih.gov/gene/100751418", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751418", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751418", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GFC5", "url": "https://www.orthodb.org/?gene=A0A9J7GFC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47085", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47085", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47085:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47085:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282723", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MF42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MF42-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIA2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2R1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGKSLGLKDRDLGKVKEGHRGHQCPPLLAGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 764, "header": "tr|A0A9J7GFC5-1|A0A9J7GFC5_CRIGR Isoform 1 of Zinc finger MYND domain-containing protein 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MF42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A8C2MF42-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFVPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 697, "header": "tr|A0A8C2MF42-1|A0A9J7GFC5_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MIA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A8C2MIA2-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 736, "header": "tr|A0A8C2MIA2-1|A0A8C2MIA2_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7GDJ3-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 685, "header": "tr|A0A9J7GDJ3-1|A0A9J7GDJ3_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X8 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7GDK1-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQVLQRLHLPFGLQACPRRPGSLSPRPCTSTPNSGCSSCPRSKAPRRKESCARAPPPQMSAELAAWQPSTLCPSMLPKGKHSKAQGGLNVRTQKVK", "length": 720, "header": "tr|A0A9J7GDK1-1|A0A9J7GDK1_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X5 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7GFC5-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGKSLGLKDRDLGKVKEGHRGHQCPPLLAGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 764, "header": "tr|A0A9J7GFC5-1|A0A9J7GFC5_CRIGR Isoform 1 of Zinc finger MYND domain-containing protein 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7GI18-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWLLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 735, "header": "tr|A0A9J7GI18-1|A0A9J7GI18_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7H2R1-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFVPELNIQNKQSLKIHVVEAGKEFDLVMVFWLLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 696, "header": "tr|A0A9J7H2R1-1|A0A9J7H2R1_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X7 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7H6V4-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAGDPYQLLQGDGPALMPPVPLDPPRSLFVPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEVSVRPGSGVSARLSSGTKEKGGRRDLQIRVSTRPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPAQGGPVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR", "length": 646, "header": "tr|A0A9J7H6V4-1|A0A9J7H6V4_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X10 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5/entry#A0A9J7JPP3-1", "sequence": { "sequence": "MEFVSGYRDEFLDFAALLFGWFRKFVTEKGTMGTNLEGRWRQLEAQIRRLPQDPALWVLHVLPNRSVGISLGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEDEQENGKESSGTEKAEPQEGGEPAPPSRELPQEAKPPAESEVTQQEASCEDGCREDRGEDERAPEKRKGRRSEAAPLHLSCLLLVTDEHGTILGIDLLMDGTQGSVGQSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRDLESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLATFMERAGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRTPWGGTPSLSRLLNGDPYQLLQGDGPALMPPVPLDPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRVLQRLHLPFGLQACPRRPGSLSPRPCTSTPNSGCSSCPRSKAPRRKESCARAPPPQMSAELAAWQPSTLCPSMLPKGKHSKAQGGLNVRTQKVK", "length": 649, "header": "tr|A0A9J7JPP3-1|A0A9J7JPP3_CRIGR Computationally mapped isoform of Zinc finger MYND domain-containing protein 15 isoform X9 OS=Cricetulus griseus OX=10029 GN=Zmynd15 PE=4 SV=1 CANONICAL=A0A9J7GFC5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 418, "start_aa": "Thr", "end_pos": 418, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr418", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 739, "start_aa": "Thr", "end_pos": 739, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr739", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MF42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF42" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MF42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF42" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751418", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751418", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC5" } ], "pmid": "" }, { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281481" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tsen54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GDM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GDM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755913", "url": "https://www.ncbi.nlm.nih.gov/gene/100755913", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024336", 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"MSDKDATETSVVTEAAQILKDGNCEPAEKPENKSQPVVSTRKRPETNPSRDCEASQLPAQETVSKDAPQTGWGYWGSWGKSLLSSASATVATVGQGISNVIEKAETSLGIPSPTEISTEVKQAAGETNASENESSPVAGPFGMLSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRSTLSQVLREVKDKEEQWPSNEVTMETDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILSSLSGEELQTTRLELEQLKEAFSLAEFCEDEEEERQGDEEFTKEITELFAQLHVSSRPEKLAMARNTAYEWIRTSLAKPVTEKEEGEKQSETENIEEVKRSSIEDIHAFAIRSLAELTACSIELFHKTAALVLHGQKQGVTALERSQMLSQLTVMLCKDLGSLSKEFTTCLTTAGVREKADVLNPLITAVFLEASNSASYIQDAFQLLLPVLQISLVESKSESPRGEPPAQSPLTEH", "length": 493, "header": "tr|A0A9J7GHR7-1|A0A9J7GHR7_CRIGR Computationally mapped isoform of Protein FAM114A2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam114a2 PE=3 SV=1 CANONICAL=A0A9J7GD45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1R5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD45/entry#A0A9J7H1R5-1", "sequence": { "sequence": 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15070", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15070", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279619", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279619", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N3V6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N3V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2NB77", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NB77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2NB77-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NB77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G893", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G893-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G893-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8S4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8S4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8S4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G924", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G924", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G924-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G924-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMT8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1044, "header": "tr|A0A9J7G9E8-1|A0A9J7G9E8_CRIGR Isoform 1 of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N3V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A8C2N3V6-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1025, "header": "tr|A0A8C2N3V6-1|A0A9J7G9E8_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A8C2NB77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A8C2NB77-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 998, "header": "tr|A0A8C2NB77-1|A0A9J7G9E8_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G893-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7G893-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 980, "header": "tr|A0A9J7G893-1|A0A9J7G9E8_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7G8S4-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 998, "header": "tr|A0A9J7G8S4-1|A0A9J7G9E8_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G924-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7G924-1", "sequence": { "sequence": "MAVALRKPPPMIVSHQRMTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 887, "header": "tr|A0A9J7G924-1|A0A9J7G924_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X15 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7G9E8-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1044, "header": "tr|A0A9J7G9E8-1|A0A9J7G9E8_CRIGR Isoform 1 of Golgin subfamily A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7GB83-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 934, "header": "tr|A0A9J7GB83-1|A0A9J7GB83_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X13 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7GB89-1", "sequence": { "sequence": "MAVALRKPPPMIVSHQRMTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 914, "header": "tr|A0A9J7GB89-1|A0A9J7GB89_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X14 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7GCU2-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 971, "header": "tr|A0A9J7GCU2-1|A0A9J7GCU2_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7JMT8-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1017, "header": "tr|A0A9J7JMT8-1|A0A9J7JMT8_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7JTF7-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1034, "header": "tr|A0A9J7JTF7-1|A0A9J7JTF7_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7JV62-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1007, "header": "tr|A0A9J7JV62-1|A0A9J7JV62_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7JWN5-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDIQDILKVLVSDLNRSNGVSLPPLDKRKAPTDHTAPAPPTADDDTMFLGVVPSSDADLTSMASPQSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEAHSVYLLGLLEETTYCLPPGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 1017, "header": "tr|A0A9J7JWN5-1|A0A9J7JWN5_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8/entry#A0A9J7JWS3-1", "sequence": { "sequence": "MWPPRFPPPHPGMSEETRQSKLAAAKKKLREYQQKNSPGVPAGAKKKKKIKNGSSPEKTTANDCQSPEDSHDAGNSSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKRDYQQKLAKEQGALREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADKYNKDLTKERDALKLELYKNNKNNEDLKQQNSELEEKLRVLVAEKAAAQSGVEDLQKKLEMSELLLQQFSSQSEASDSNQQLQHAMEERAQLETHVGQLMESLKQLQMERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRESQVQELETSLAELRSQMEEPPPPPPPAGPSEVEQRLQGEVEQLQKELENLTEQLRAQVQDNESLSHLNREQEERLLELERAAERWSEQTEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELAKKLGELQERLGELKETVELKSQEAQSLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAVHKQLLLQTQLMDQLQHEEVQSKMAAEMARQELQKTQERLEATSQENQQLQAQLSLLALPGEGDEEQEEQEEEAPRPSLTIPEDLDSKEAMVAFFNTAIASAEEEQTRLRVQLREQKARCRSLAHLSTPVQSKIPSNVSDSVSEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKIKLLELQELVLRLVNERNEWQGKFLAVSQNPVDVPTPVPTGSQGFGAADQQGDLREVSLADSIEPAQGAPGALTPPENPTAQQIMQLLREIQNPQERPGLGSNPCIPFFYRADENDEVKIMVV", "length": 961, "header": "tr|A0A9J7JWS3-1|A0A9J7JWS3_CRIGR Computationally mapped isoform of Golgin subfamily A member 2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Golga2 PE=4 SV=1 CANONICAL=A0A9J7G9E8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3V6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3V6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3V6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3V6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754167", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754167", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi cisterna membrane", "id": "GO:0032580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032580", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8" } ], "pmid": "" }, { "name": "cis-Golgi network", "id": "GO:0005801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005801", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8" } ], "pmid": "" }, { "name": "Golgi cis cisterna", "id": "GO:0000137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000137", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9E8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9E8" }, { "id": "PF15070", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15070" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgin subfamily A conserved", "eco_id": "ECO_0000259", "start_pos": 413, "end_pos": 950, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 522, "end_pos": 524 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 82, "end_pos": 84 }, { "start_pos": 830, "end_pos": 832 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G933-1", "uniprot_ac": "A0A9J7G933", "uniprot_id": "A0A9J7G933_CRIGR", "mass": { "chemical_mass": 104217.0, "monoisotopic_mass": 104217.0 }, "refseq": { "ac": "XP_016824542", "name": "neutral alpha-glucosidase C isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824542" }, "gene_names": [ { "name": "Ganc", "type": "recommended", "evidence": [ { "id": "A0A9J7G933", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ] }, { "name": "Ganc", "type": "synonym", "evidence": [ { "id": "XP_016824542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824542" } ] } ], "protein_names": [ { "name": "Neutral alpha-glucosidase C isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7G933", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933/entry#names_and_taxonomy" } ] }, { "name": "neutral alpha-glucosidase C isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016824542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824542" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016824542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824542" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ganc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933", "locus": {} } ], "crossref": [ { "id": "cd06603", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06603", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14752", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14752", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770033", "url": "https://www.ncbi.nlm.nih.gov/gene/100770033", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770033", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770033", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MHNVYGH", "url": "https://omabrowser.org/oma/group/MHNVYGH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N406", "url": "https://www.orthodb.org/?gene=A0A8C2N406", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G933", "url": "https://www.orthodb.org/?gene=A0A9J7G933", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22762", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22762", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22762:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22762:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13802", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13802", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016824542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824542", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N406", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N406-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N406-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G933-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAAEKEEISVEDEAVDKTIFRDCSEIAFYRRQKQQLSKNTTYQALLDSVTTEQDSTRFQIISEANKTPLLVEVYGIEKNIFRLKINEETPLKPRYEVPDVITSKLRTVRLVSCPGDAGSLILTDGKGDLKCHISANPFKVDLVSENEAVISINSLGQLYFEHLQIPHKQSRATKGNQESAPADTSQENQEDLGLWEEKFGKFVDVKANGPSSIGLDFSFHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQIHDKMGIYGSVPYLLAHKQGKTVAIFWLNASETLVEINTEPAVEYTLTQTGAAAAKQKVRCRTDVRWMSESGIIDVFLLTGPTPSDIFKQYSSLTGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHGIPYDVMWLDIEHTEDKKYFTWDKKRFANPRRMQELLRSKKRKLVVISDPHIKVDPDYSVYAKAKEQGFFVKNPEGGDFEGVCWPGLSSYLDFTNPKVREWYSGLFAFPVYQGSTDILFIWNDMNEPSVFRGPELTMQKNAVHYGNWEHRELHNMYGFYQQMATAEGLIRRSKGQERPFVLSRSFFAGSQKYGAVWTGDNAAEWNYLKISIPMLLTLSVSGISFCGADVGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTRLIREAIRERYTLLPYLYSLFYRVHMSSEPVMRPLWVEFPDDLETFSVDDEYMLGSALLVHPITEPQTTMADIFLPGSNEVWYDSKTFAQWKGGCTVKIPVTLDTIPVFQRGGSVVPIKTSVGKSTGWMTDSPYGLRLALSTQDSAEGELYLDDGHSFQYLHQDQFLHRRFSFCSGVLINRCADEKGHYPSKCIVEQILVLGLRKKPSSVTTRSSDGKVQPAAFTYHTKASALSLEKLSLSITDDWEVHIR", "length": 915, "header": "tr|A0A9J7G933-1|A0A9J7G933_CRIGR Isoform 1 of Neutral alpha-glucosidase C isoform X1 OS=Cricetulus griseus OX=10029 GN=Ganc PE=3 SV=1 CANONICAL=A0A9J7G933-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N406-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933/entry#A0A8C2N406-1", "sequence": { "sequence": "MEAAEKEEISVEDEAVDKTIFRDCSEIAFYRRQKQQLSKNTTYQALLDSVTTEQDSTRFQIISEANKTPLLVEVYGIEKNIFRLKINEETPLKPRYEVPDVITSKLRTVRLVSCPGDAGSLILTDGKGDLKCHISANPFKVDLVSENEAVISINSLGQLYFEHLQIPHKQRATKGNQESAPADTSQENQEDLGLWEEKFGKFVDVKANGPSSIGLDFSFHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQIHDKMGIYGSVPYLLAHKQGKTVAIFWLNASETLVEINTEPAVEYTLTQTGAAAAKQKVRCRTDVRWMSESGIIDVFLLTGPTPSDIFKQYSSLTGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHGIPYDVMWLDIEHTEDKKYFTWDKKRFANPRRMQELLRSKKRKLVVISDPHIKVDPDYSVYAKAKEQGFFVKNPEGGDFEGVCWPGLSSYLDFTNPKVREWYSGLFAFPVYQGSTDILFIWNDMNEPSVFRGPELTMQKNAVHYGNWEHRELHNMYGFYQQMATAEGLIRRSKGQERPFVLSRSFFAGSQKYGAVWTGDNAAEWNYLKISIPMLLTLSVSGISFCGADVGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTRLIREAIRERYTLLPYLYSLFYRVHMSSEPVMRPLWVEFPDDLETFSVDDEYMLGSALLVHPITEPQTTMADIFLPGSNEVWYDSKTFAQWKGGCTVKIPVTLDTIPVFQRGGSVVPIKTSVGKSTGWMTDSPYGLRLALSTQDSAEGELYLDDGHSFQYLHQDQFLHRRFSFCSGVLINRCADEKGHYPSKCIVEQILVLGLRKKPSSVTTRSSDGKVQPAAFTYHTKASALSLEKLSLSITDDWEVHIR", "length": 914, "header": "tr|A0A8C2N406-1|A0A9J7G933_CRIGR Computationally mapped isoform of Neutral alpha-glucosidase C isoform X1 OS=Cricetulus griseus OX=10029 GN=Ganc PE=3 SV=1 CANONICAL=A0A9J7G933-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G933-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933/entry#A0A9J7G933-1", "sequence": { "sequence": "MEAAEKEEISVEDEAVDKTIFRDCSEIAFYRRQKQQLSKNTTYQALLDSVTTEQDSTRFQIISEANKTPLLVEVYGIEKNIFRLKINEETPLKPRYEVPDVITSKLRTVRLVSCPGDAGSLILTDGKGDLKCHISANPFKVDLVSENEAVISINSLGQLYFEHLQIPHKQSRATKGNQESAPADTSQENQEDLGLWEEKFGKFVDVKANGPSSIGLDFSFHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQIHDKMGIYGSVPYLLAHKQGKTVAIFWLNASETLVEINTEPAVEYTLTQTGAAAAKQKVRCRTDVRWMSESGIIDVFLLTGPTPSDIFKQYSSLTGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHGIPYDVMWLDIEHTEDKKYFTWDKKRFANPRRMQELLRSKKRKLVVISDPHIKVDPDYSVYAKAKEQGFFVKNPEGGDFEGVCWPGLSSYLDFTNPKVREWYSGLFAFPVYQGSTDILFIWNDMNEPSVFRGPELTMQKNAVHYGNWEHRELHNMYGFYQQMATAEGLIRRSKGQERPFVLSRSFFAGSQKYGAVWTGDNAAEWNYLKISIPMLLTLSVSGISFCGADVGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTRLIREAIRERYTLLPYLYSLFYRVHMSSEPVMRPLWVEFPDDLETFSVDDEYMLGSALLVHPITEPQTTMADIFLPGSNEVWYDSKTFAQWKGGCTVKIPVTLDTIPVFQRGGSVVPIKTSVGKSTGWMTDSPYGLRLALSTQDSAEGELYLDDGHSFQYLHQDQFLHRRFSFCSGVLINRCADEKGHYPSKCIVEQILVLGLRKKPSSVTTRSSDGKVQPAAFTYHTKASALSLEKLSLSITDDWEVHIR", "length": 915, "header": "tr|A0A9J7G933-1|A0A9J7G933_CRIGR Isoform 1 of Neutral alpha-glucosidase C isoform X1 OS=Cricetulus griseus OX=10029 GN=Ganc PE=3 SV=1 CANONICAL=A0A9J7G933-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 341, "start_aa": "Thr", "end_pos": 341, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr341", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N406" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N406" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770033", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770033", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9P9M8-1", "protein_name": "Neutral alpha-glucosidase C isoform X1", "gene_name": "ganc", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEVNVSTESIESVLKSEDKFRKNHEILFYRRQRDKAVSQYFTSYETFVLTDGGASLELCERDSQDRLSLQIRATQNGTIRVSIDELQLVKPRYQVSDVLVGELRYEPLRVEWKKEDCVCLTWGLGQYQLLAFFSPFKLEISCAGEEIVTLNPGNKLCFETLQDPASRSSSNSSEGDENCCGLWKETFRQFEDIKANGPSSVGLDLSLHGFNHTYGVPEHADTLLLKDTSVSEAYRLYNLDVFGYEINSRLGLYGSVPLLLAHKPERTAGVFWLNSSETLVDVKYNTEQNEDEDEPPGKKSRISPRTDVRWISESGTIDCFILLGPTPAQVFSQYAQLTGKCRCRLYNGCARNRPLLSYQALPPLFSLGNHQCRWNYEDEADVKAVDAGFDLHGIPYDVIWLDIEHTDGKRYFTWDSKRFPNPAELQHHLMKKKRKLVVISDPHIKMDPDWSIYCEAKKGGHFVKNREGFDFEGTCWPGESCYLDFSSSKTRLWYARQFSLSKYEGSTESLFVWNDMNEPSVFNGPEQTMPKDALHHGGWEHRELHNLYGFYQHMATFEGLLTRSGGTERPFILTRSFFAGSQRLGAIWTGDNVATWEYLKISIPMLLSLSLTGIQFCGADVGGFVQDPDPELLVRWYQAGALQPFFRAHSAKMTKRREPWLFGEEVTSAIRSAVQDRYCLLPYWYTLFHQAHTAALPPIRPLWVEFPKDTSTFAVENQYMIGGALLVCPVTDPGVTEVKVLLPGSNELWYDTNTSEVHKGARSLDVPVTLTTVLVFQRGGTVVPRRTACGSCTADLQHYTITLTVALDIKGKADGFLYLDDGHSFNYRDQMQFCLRRFSMQAGRLVNSCANDKGLFVSDDKVETVVILGLKSVKRKPKLKSGAKRTSVMFEFDKKRGVLTLSGLELEICKDWEIII", "length": 916 }, "evidence": [ { "id": "A0A9J7G933", "url": "https://omabrowser.org/oma/group/A0A9J7G933/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9RXE5-1", "protein_name": "Glucosidase alpha, neutral C", "gene_name": "GANC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESAEKEEISVEDEAVDKNVFKDCSKIAFYRRQKQLLSKKSTYRALLDSVTPGEDSARFQIINEPAKVPLLAEVCGIEGNIFRLKINEEIPLKPRYEVPDVLTSKLTTVRLTSCPGDTGSLVLASGKGDLKCHITANPFKVDLVSEEEVVMSINSLGQLYFEQLQIPPKQRATKKNEEDASIDTTQENQEELGLWEEKFENFVDVKVNGPASIGLDFSLHGFEHLYGIPQHAESHQLKNTSDSDAYRLYNLDVYGYKIHDKMGIYGSVPYLLAHKLGRTLGIFWLNASETLVEIKTEPAVKYTLTQTGPVAAKQKVGSRTDVHWMSESGIIDVFLLTGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYDVMWLDIEHTEGKRYFTWDKKRFPNPKRMQDLLRSKKRKLVVISDPHVKVDPNYSVYAKAKEQGFFVRNHEGGDFEGVCWPGLSSYLDFTNPKVRKWYSSLFAFSVYQGSTDILHIWNDMNEPSVFKGPEQTMQKNAIHHGNWEHRELHNIYGFYQQMATTEGLIQRSKGKERPFVLTRSFFAGSQKYGAVWTGDNTAEWSHLKISIPMLLTLSVTGISFCGADVGGFIGDPEAELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEHTRLIREAIRERYTLLPYWYSLFYSAHVASQPVMRPLWVEFPNELETFSVEDEYMLGGALLVHPVTEPKATVVDVFLPGSSEIWYDSKTFAHWKGACTVKIPVTLDAIPVFQRGGSVVPIKTTIGRSTGFMTNSPYGLRVALSTKGSAMGEFYLDDGHSFQYLHQKQFLHRKFSFSSGVLTNSCADERGHYPSKCVVEQILVLGLKKQPSSVTAHSADGSAQPVAFTYHATTSTLKLETLSLNIGADWKVRVQ", "length": 914 }, "evidence": [ { "id": "A0A9J7G933", "url": "https://omabrowser.org/oma/group/A0A9J7G933/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A7G5-1", "protein_name": "Glucosidase, alpha; neutral C", "gene_name": "Ganc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METPEKKEISVEDEAVDKTIFKDCGKIAFYRRQKQQLSKNTTYRASLGSVSTEQDSTRFQISSEATKIPLVAEVYGIEKDIFRLKINEETPLKPRYEVPDVVNSKLGTVRLVCSGDTGSLTLTDRKGDLRCHISANPFKIDLLSKDEALISINSLGKLYFEHLRVPHKQRATKGNGQNTPADTFQENQEDLGLWEEKFGKFVDVKVNGPSSVGLDFSLHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQVHDKMGIYGSVPYLLAHKQGRTVGIFWLNASETLVEINTEPAAEYTLTQMGPAAAKQKVRCRTNVHWMSESGIIDVFLLTGPTPADIFKQYSYITGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYDVMWLDIEHTEDKKYFTWDKKRFANPKRMQELLRSKGRKLVVISDPHIKVDPDYTVYAEAKERGFFVKNPEGGDLEGVCWPGLSSYLDFTNPKVREWYSSLFAFPVYQGSTDILFLWNDMNEPSVFRGPELTMQKNAVHHGNWEHRELHNIYGFYHQMATAEGLIQRSQGKERPFVLSRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPEAELLVRWYQAAAYQPFFRGHATMNTKRREPWLFGAEYTQLIREAIRERYSLLPYLYSLFYHAHVSSQPVMRPLWVEFPDDLETFAVEDEYMLGNALLVHPVTAPQTTMIDVFLPGSNEVWYNSKTFAYWKGGCAVKVPVTLDTIPVFQRGGSVVPVKTTVGKSTGWMTDSPYGLRVALNTQGSAVGELYLDDGHSFQYLHQNQFLHRKFLFCSSVLTNRCADEKGHYPSKCIVEQILVLGLKKKPSSVTTHSSDGKVQPATFAYCAKTCTLSLKKLSLSVGDDWEVHVS", "length": 913 }, "evidence": [ { "id": "A0A9J7G933", "url": "https://omabrowser.org/oma/group/A0A9J7G933/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BVW0-1", "protein_name": "Neutral alpha-glucosidase C", "gene_name": "Ganc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAAEKEEISVEDEAVDKTIFKDCGKIAFYRRQKQQLTKTTTYQALLGSVDTEQDSTRFQIISEATKIPLVAEVYGIEKDIFRLKINEETPLKPRLVCSGDTGSLILTNRKGDLKCHVSANPFKIDLLSKNEAVISINSLGQLYFEHLQVPHKQRATKGNGQNTPAATSQENQEDLGLWEEKFGKFVDVKANGPSSVGLDFSLHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQVHDKMGIYGSVPYLLAHKQGRTVGIFWLNASETLVEINTEPAVEYTLTQMGPAAAKPKVRCRTDVHWMSESGIIDVFLLTGPTPADVFKQYSYITGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYDVMWLDIEHTEDKKYFTWDKKRFANPKRMQELLRSKKRKLVVISDPHIKVDPDYTVYAQAKEQGFFVKNPEGGDFEGVCWPGLSSYLDFTNPKVREWYSSLFAFPVYQGSTDILFLWNDMNEPSVFRGPELTMHKSAVHYGDWEHRELHNIYGFYQQMATAEGLIQRSKGKERPFVLSRSFFAGSQKYGAVWTGDNKAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPEAELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTQLIREAIRQRYALLPYLYSLFYHTHVSSQPVMRPLWVEYPDDLETFAVEDEYMLGSALLVHPVTDPQTATIDVFLPGSDEVWYDSKTFAYWKGGCTVKIPVTLDTIPVFQRGGSVVPVKTTVGTSTGWMADSPYELRVALSTQGSAVGELYLDDGHSFQYLHQNQFLYRKFLFCSSVLTNRCANEKGHYPSKCIVEQILVLGLKKKPSSVTTHLSDGRAQPAAFTYCAETSALRLEKLSLRIGEDWEVRVG", "length": 898 }, "evidence": [ { "id": "A0A9J7G933", "url": "https://omabrowser.org/oma/group/A0A9J7G933/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TET4-1", "protein_name": "Neutral alpha-glucosidase C", "gene_name": "GANC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAAVKEEISLEDEAVDKNIFRDCNKIAFYRRQKQWLSKKSTYQALLDSVTTDEDSTRFQIINEASKVPLLAEIYGIEGNIFRLKINEETPLKPRFEVPDVLTSKPSTVRLISCSGDTGSLILADGKGDLKCHITANPFKVDLVSEEEVVISINSLGQLYFEHLQILHKQRAAKENEEETSVDTSQENQEDLGLWEEKFGKFVDIKANGPSSIGLDFSLHGFEHLYGIPQHAESHQLKNTGDGDAYRLYNLDVYGYQIYDKMGIYGSVPYLLAHKLGRTIGIFWLNASETLVEINTEPAVEYTLTQMGPVAAKQKVRSRTHVHWMSESGIIDVFLLTGPTPSDVFKQYSHLTGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYDAMWLDIEHTEGKRYFTWDKNRFPNPKRMQELLRSKKRKLVVISDPHIKIDPDYSVYVKAKDQGFFVKNQEGEDFEGVCWPGLSSYLDFTNPKVREWYSSLFAFPVYQGSTDILFLWNDMNEPSVFRGPEQTMQKNAIHHGNWEHRELHNIYGFYHQMATAEGLIKRSKGKERPFVLTRSFFAGSQKYGAVWTGDNTAEWSNLKISIPMLLTLSITGISFCGADIGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEHTRLIREAIRERYGLLPYWYSLFYHAHVASQPVMRPLWVEFPDELKTFDMEDEYMLGSALLVHPVTEPKATTVDVFLPGSNEVWYDYKTFAHWEGGCTVKIPVALDTIPVFQRGGSVIPIKTTVGKSTGWMTESSYGLRVALSTKGSSVGELYLDDGHSFQYLHQKQFLHRKFSFCSSVLINSFADQRGHYPSKCVVEKILVLGFRKEPSSVTTHSSDGKDQPVAFTYCAKTSILSLEKLSLNIATDWEVRII", "length": 914 }, "evidence": [ { "id": "A0A9J7G933", "url": "https://omabrowser.org/oma/group/A0A9J7G933/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "alpha-1,4-glucosidase activity", "id": "GO:0004558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004558", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ], "pmid": "" }, { "name": "N-glycan processing", "id": "GO:0006491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G933", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G933", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" }, { "id": "PF13802", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13802" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycoside hydrolase family 31 N-terminal", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 293, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G933", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" }, { "id": "PF01055", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01055" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycoside hydrolase family 31 TIM barrel", "eco_id": "ECO_0000259", "start_pos": 357, "end_pos": 684, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G933", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G933" }, { "id": "PF21365", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21365" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl hydrolase family 31 C-terminal", "eco_id": "ECO_0000259", "start_pos": 693, "end_pos": 780, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 341 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 287, "end_pos": 289 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGX7-1", "uniprot_ac": "A0A9J7GGX7", "uniprot_id": "A0A9J7GGX7_CRIGR", "mass": { "chemical_mass": 60006.0, "monoisotopic_mass": 60006.0 }, "refseq": { "ac": "XP_007643325", "name": "GH3 domain-containing protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643325" }, "gene_names": [ { "name": "Ghdc", "type": "recommended", "evidence": [ { "id": "A0A9J7GGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" } ] }, { "name": "Ghdc", "type": "synonym", "evidence": [ { "id": "XP_007643325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643325" } ] } ], "protein_names": [ { "name": "GH3 domain-containing protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007643325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643325" }, { "id": "A0A9J7GGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614078.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643325" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ghdc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754994", "url": "https://www.ncbi.nlm.nih.gov/gene/100754994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754994", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754994", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2NCD1", "url": "https://www.orthodb.org/?gene=A0A8C2NCD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GEF7", "url": "https://www.orthodb.org/?gene=A0A9J7GEF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GGX7", "url": "https://www.orthodb.org/?gene=A0A9J7GGX7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31901:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31901:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007643325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2NCD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NCD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2NCD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NCD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H726", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H726", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H726-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H726-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATAAAAAAAAAAAAAVVATPTGHAVAAEAAGQTILAGPPPTPGGLGGTGLGSRLAASETGTEHTPRGPKPAAGPRVVSEESPGFLLSPQGEYSLHPISQTVSGFLPRGSPHSSHFLRVSGILRATDLSTFRSHLPLTKTRQAKEEESEEKLLSPAPLQDHREASLQATLLGLVTLNKAYPEVLTPGSTACVTPTSPWPNSVPWLRHALGRVSPLGAKDSQTLLLEALISPGLRALEARTAVELLDVFVGLEADGKEMAEAIAAGNLGTPLPSRAAELQEALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALRALWCQGLAFFSPAYAASGGVMALNLWPEQPQGFYLLPPGVPFIELLPVKEGTQEEAASTLLLTDVQREEEYELVLTDHAGLTRCRLGDVVRVVGAYNQCPVVSFTGRLGQTLSVRGEVTDENIFSAALAKAVGQWPGAKLLDHACVESSILDPCDGSAPHYEVFMELRGLRNLSEENRDKLDHCLKEVSPHYKSLRLRGSVSPAKVHLVRPGSFRVLREALAACPSSSFPPEMPRVLRLGHLAKLLQKRVMS", "length": 568, "header": "tr|A0A9J7GGX7-1|A0A9J7GGX7_CRIGR Isoform 1 of GH3 domain-containing protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ghdc PE=4 SV=1 CANONICAL=A0A9J7GGX7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2NCD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7/entry#A0A8C2NCD1-1", "sequence": { "sequence": "MLLLWPLPLPLPPPLLLLLLLLLLPLAMLWQQRRRARPSWLARLQHQVAWGALGLAAAWQHRKLEQSTLHVGQSQQQALEWCLKKAQGSCCLPRGSTDLSTFRSHLPLTKTRQAKEEESEEKLLSPAPLQDHREASLQATLLGLVTLNKAYPEVLTPGSTACVTPTSPWPNSVPWLRHALGRVSPLGAKDSQTLLLEALISPGLRALEARTAVELLDVFVGLEADGKEMAEAIAAGNLGTPLPSRAAELQEALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALRALWCQGLAFFSPAYAASGGVMALNLWPEQPQGFYLLPPGVPFIELLPVKEGTQEEAASTLLLTDVQREEEYELVLTDHAGLTRCRLGDVVRVVGAYNQCPVVSFTGRLGQTLSVRGEVTDENIFSAALAKAVGQWPGAKLLDHACVESSILDPCDGSAPHYEVFMELRGLRNLSEENRDKLDHCLKEVSPHYKSLRLRGSVSPAKVHLVRPGSFRVLREALAACPSSSFPPEMPRVLRLGHLAKLLQKRVMS", "length": 539, "header": "tr|A0A8C2NCD1-1|A0A9J7GGX7_CRIGR Computationally mapped isoform of GH3 domain-containing protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ghdc PE=4 SV=1 CANONICAL=A0A9J7GGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GEF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7/entry#A0A9J7GEF7-1", "sequence": { "sequence": "MLLLWPLPLPLPPPLLLLLLLLLLPLAMLWQQRRRARPSWLARLQHQVAWGALGLAAAWQHRKLEQSTLHVGQSQQQALEWCLKKAQGSCCLPRGSTGSPHSSHFLRVSGILRATDLSTFRSHLPLTKTRQAKEEESEEKLLSPAPLQDHREASLQATLLGLVTLNKAYPEVLTPGSTACVTPTSPWPNSVPWLRHALGRVSPLGAKDSQTLLLEALISPGLRALEARTAVELLDVFVGLEADGKEMAEAIAAGNLGTPLPSRAAELQEALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALRALWCQGLAFFSPAYAASGGVMALNLWPEQPQGFYLLPPGVPFIELLPVKEGTQEEAASTLLLTDVQREEEYELVLTDHAGLTRCRLGDVVRVVGAYNQCPVVSFTGRLGQTLSVRGEVTDENIFSAALAKAVGQWPGAKLLDHACVESSILDPCDGSAPHYEVFMELRGLRNLSEENRDKLDHCLKEVSPHYKSLRLRGSVSPAKVHLVRPGSFRVLREALAACPSSSFPPEMPRVLRLGHLAKLLQKRVMS", "length": 557, "header": "tr|A0A9J7GEF7-1|A0A9J7GEF7_CRIGR Computationally mapped isoform of GH3 domain-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ghdc PE=4 SV=1 CANONICAL=A0A9J7GGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7/entry#A0A9J7GGX7-1", "sequence": { "sequence": "MATAAAAAAAAAAAAAVVATPTGHAVAAEAAGQTILAGPPPTPGGLGGTGLGSRLAASETGTEHTPRGPKPAAGPRVVSEESPGFLLSPQGEYSLHPISQTVSGFLPRGSPHSSHFLRVSGILRATDLSTFRSHLPLTKTRQAKEEESEEKLLSPAPLQDHREASLQATLLGLVTLNKAYPEVLTPGSTACVTPTSPWPNSVPWLRHALGRVSPLGAKDSQTLLLEALISPGLRALEARTAVELLDVFVGLEADGKEMAEAIAAGNLGTPLPSRAAELQEALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALRALWCQGLAFFSPAYAASGGVMALNLWPEQPQGFYLLPPGVPFIELLPVKEGTQEEAASTLLLTDVQREEEYELVLTDHAGLTRCRLGDVVRVVGAYNQCPVVSFTGRLGQTLSVRGEVTDENIFSAALAKAVGQWPGAKLLDHACVESSILDPCDGSAPHYEVFMELRGLRNLSEENRDKLDHCLKEVSPHYKSLRLRGSVSPAKVHLVRPGSFRVLREALAACPSSSFPPEMPRVLRLGHLAKLLQKRVMS", "length": 568, "header": "tr|A0A9J7GGX7-1|A0A9J7GGX7_CRIGR Isoform 1 of GH3 domain-containing protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ghdc PE=4 SV=1 CANONICAL=A0A9J7GGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H726-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7/entry#A0A9J7H726-1", "sequence": { "sequence": "MATAAAAAAAAAAAAAVVATPTGHAVAAEAAGQTILAGPPPTPGGLGGTGLGSRLAASETGTEHTPRGPKPAAGPRVVSEESPGFLLSPQGEYSLHPISQTVSGFLPRGSPHSSHFLRVSGILRATDLSTFRSHLPLTKTRQAKEEESEEKLLSPAPLQDHREASLQATLLGLVTLNKAYPEVLTPGSTACVTPTSPWPNSVPWLRHALGRVSPLGAKDSQTLLLEALISPGLRALEARTAVELLDVFVGLEADGKEMAEAIAAGNLGTPLPSRAAELQEALEQGPRGLALRLWPKLQVVVTLDAGGQAEAVAALRALWCQGLAFFSPAYAASGGVMALNLWPEQPQGFYLLPPGVPFIELLPVKEGTQEEAASTLLLTDVQREEEYELVLTDHAGLTRCRLGDVVRVVGAYNQCPVVSFTGRLGQTLSVRGEVTDENIFSAALAKAVGQWPGAKLLDHACVESSILVGSRSSCIC", "length": 476, "header": "tr|A0A9J7H726-1|A0A9J7H726_CRIGR Computationally mapped isoform of GH3 domain-containing protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Ghdc PE=4 SV=1 CANONICAL=A0A9J7GGX7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 195, "start_aa": "Thr", "end_pos": 195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr195", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 42, "start_aa": "Thr", "end_pos": 42, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2NCD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NCD1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2NCD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NCD1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754994", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754994", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acid-amino acid ligase activity", "id": "GO:0016881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016881", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 488, "end_pos": 490, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" }, { "id": "PF25146", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25146" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH3", "eco_id": "ECO_0000259", "start_pos": 251, "end_pos": 315, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" }, { "id": "PF23572", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23572" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH3 C-terminal", "eco_id": "ECO_0000259", "start_pos": 442, "end_pos": 536, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX7" }, { "id": "PF23571", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23571" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH3 middle", "eco_id": "ECO_0000259", "start_pos": 351, "end_pos": 423, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 42, 195 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 488, "end_pos": 490 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JJ80-1", "uniprot_ac": "A0A9J7JJ80", "uniprot_id": "A0A9J7JJ80_CRIGR", "mass": { "chemical_mass": 40203.0, "monoisotopic_mass": 40203.0 }, "refseq": { "ac": "XP_027266054", "name": "ubiquitin domain-containing protein UBFD1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266054" }, "gene_names": [ { "name": "Ubfd1", "type": "recommended", "evidence": [ { "id": "A0A9J7JJ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80" } ] }, { "name": "Ubfd1", "type": "synonym", "evidence": [ { "id": "XP_027266054", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266054" } ] } ], "protein_names": [ { "name": "Ubiquitin domain-containing protein UBFD1", "type": "recommended", "evidence": [ { "id": "A0A9J7JJ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin domain-containing protein UBFD1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027266054", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266054" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266054", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266054" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJ80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ubfd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80", "locus": {} } ], "crossref": [ { "id": "A0A9J7JJ80", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JJ80", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17047", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17047", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103160474", "url": "https://www.ncbi.nlm.nih.gov/gene/103160474", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160474", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160474", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JJ80", "url": "https://www.orthodb.org/?gene=A0A9J7JJ80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16470", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16470", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16470:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16470:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25343", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25343", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266054", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266054", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFI5", "url": 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"MLKRGRGRPGKRRRRVSIETSTCFRPGWVKLGAVAGANLSQLASSRRPLRERWVLYTIIMAAAGAPDGMDTEAEAVTTEAPARPLNCVEDEAAAAAAAAAATAAEDSCDARGSLQPAPAQPPGDPVAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTKDSWRNPNMPNSPVCGQHCRCSVFESGLRNSPWGPLKTWSVNL", "length": 347, "header": "tr|A0A9J7JEU5-1|A0A9J7JEU5_CRIGR Computationally mapped isoform of Ubiquitin domain-containing protein UBFD1 OS=Cricetulus griseus OX=10029 GN=Ubfd1 PE=4 SV=1 CANONICAL=A0A9J7JJ80-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80/entry#A0A9J7JJ80-1", "sequence": { "sequence": "MLKRGRGRPGKRRRRVSIETSTCFRPGWVKLGAVAGANLSQLASSRRPLRERWVLYTIIMAAAGAPDGMDTEAEAVTTEAPARPLNCVEDEAAAAAAAAAATAAEDSCDARGSLQPAPAQPPGDPVAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMMPHLSTRVVCHSSQSSLIFRVIFQRYRKGHTLHFIPS", "length": 370, "header": "tr|A0A9J7JJ80-1|A0A9J7JJ80_CRIGR Isoform 1 of Ubiquitin domain-containing protein UBFD1 OS=Cricetulus griseus OX=10029 GN=Ubfd1 PE=4 SV=1 CANONICAL=A0A9J7JJ80-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80/entry#A0A9J7K3H7-1", "sequence": { "sequence": "MLKRGRGRPGKRRRRVSIETSTCFRPGWVKLGAVAGANLSQLASSRRPLRERWVLYTIIMAAAGAPDGMDTEAEAVTTEAPARPLNCVEDEAAAAAAAAAATAAEDSCDARGSLQPAPAQPPGDPVAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMDTRPETGVDQNPSGSRASCIPRNTPGTAV", "length": 362, "header": "tr|A0A9J7K3H7-1|A0A9J7K3H7_CRIGR Computationally mapped isoform of Ubiquitin domain-containing protein UBFD1 OS=Cricetulus griseus OX=10029 GN=Ubfd1 PE=4 SV=1 CANONICAL=A0A9J7JJ80-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFI5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFI5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFI5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFI5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160474", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160474", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJ80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ80" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJ80", "url": 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"type": "synonym", "evidence": [ { "id": "XP_027286889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286889" } ] } ], "protein_names": [ { "name": "Dermokine isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GKK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1/entry#names_and_taxonomy" } ] }, { "name": "dermokine isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286889" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286889" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dmkn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21118", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21118", "database": "CDD", "categories": [ "Protein Classification" ] }, 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Classification" ] }, { "id": "PTHR36881", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36881", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36881:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36881:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QGU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLRGSLACLLLTLCLGSGAASPLQNGGEGVGASASQGMGDAISHGVGEAVGEGAKEAASSGIQDALGQGHGGEGGYALRGARGDAFDHRLGEAARSLGNAGNEVGRQAEDVIRRGIDAAHNSGSWGTSGGHGMFGSQGGFGGHGNPGGQGTPWASEGNFGTNSLGGSVGQGGDGSSFGYKANAQGAVAQPGYGAVRGNNQNSGCTNPPSSGSRESNSGGSSGGGGGNGGHDGSSGNSHSSSGNSHGSSGNSQGSSGHGSSGHGNGNQGNGGQGNSGSSSSGSRELETSNFDEGYSVSRGTGSSSGSRGGSGSGNKPECDNPGDDVRMAGGSRNQESRESSRLLGGSHDYQEHGSSGDGGRNEAVSGLKAMNSDPSSLPFNFDSFWENFKSKLGFINWDAINKGRLPPPSTRALLYFRRLWENFKRNTPFFNWKQIEGSDLSSLQKRAGGTDQFAQPEAARQEASAVTAKNYYNSQQGSPGYNWQYYAKTTAKGGVTPSSSSASRAQPGLLKWLKFW", "length": 517, "header": "tr|A0A9J7GKK1-1|A0A9J7GKK1_CRIGR Isoform 1 of Dermokine isoform X2 OS=Cricetulus griseus OX=10029 GN=Dmkn PE=4 SV=1 CANONICAL=A0A9J7GKK1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QGU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1/entry#A0A8C2QGU5-1", "sequence": { "sequence": "MKPATVSALLLILLGVAWRGDSHSWGSDLSSLQKRAGGTDQFAQPEAARQEASAVTAKNYYNSQQGSPGYNWQYYAKTTAKGGVTPSSSSASRAQPGLLKWLKFW", "length": 105, "header": "tr|A0A8C2QGU5-1|A0A9J7GKK1_CRIGR Computationally mapped isoform of Dermokine isoform X2 OS=Cricetulus griseus OX=10029 GN=Dmkn PE=4 SV=1 CANONICAL=A0A9J7GKK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1/entry#A0A9J7GKK1-1", "sequence": { "sequence": "MKLRGSLACLLLTLCLGSGAASPLQNGGEGVGASASQGMGDAISHGVGEAVGEGAKEAASSGIQDALGQGHGGEGGYALRGARGDAFDHRLGEAARSLGNAGNEVGRQAEDVIRRGIDAAHNSGSWGTSGGHGMFGSQGGFGGHGNPGGQGTPWASEGNFGTNSLGGSVGQGGDGSSFGYKANAQGAVAQPGYGAVRGNNQNSGCTNPPSSGSRESNSGGSSGGGGGNGGHDGSSGNSHSSSGNSHGSSGNSQGSSGHGSSGHGNGNQGNGGQGNSGSSSSGSRELETSNFDEGYSVSRGTGSSSGSRGGSGSGNKPECDNPGDDVRMAGGSRNQESRESSRLLGGSHDYQEHGSSGDGGRNEAVSGLKAMNSDPSSLPFNFDSFWENFKSKLGFINWDAINKGRLPPPSTRALLYFRRLWENFKRNTPFFNWKQIEGSDLSSLQKRAGGTDQFAQPEAARQEASAVTAKNYYNSQQGSPGYNWQYYAKTTAKGGVTPSSSSASRAQPGLLKWLKFW", "length": 517, "header": "tr|A0A9J7GKK1-1|A0A9J7GKK1_CRIGR Isoform 1 of Dermokine isoform X2 OS=Cricetulus griseus OX=10029 GN=Dmkn PE=4 SV=1 CANONICAL=A0A9J7GKK1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGU5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGU5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cornified envelope assembly", "id": "GO:1903575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903575", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GFF1-1", "uniprot_ac": "A0A9J7GFF1", "uniprot_id": "A0A9J7GFF1_CRIGR", "mass": { "chemical_mass": 49198.0, "monoisotopic_mass": 49198.0 }, "refseq": { "ac": "XP_016830088", "name": "haloacid dehalogenase-like hydrolase domain-containing 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830088" }, "gene_names": [ { "name": "Hdhd5", "type": "recommended", "evidence": [ { "id": "A0A9J7GFF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1" } ] }, { "name": "Hdhd5", "type": "synonym", "evidence": [ { "id": "XP_016830088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830088" } ] } ], "protein_names": [ { "name": "Haloacid dehalogenase-like hydrolase domain-containing 5 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7GFF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1/entry#names_and_taxonomy" } ] }, { "name": "haloacid dehalogenase-like hydrolase domain-containing 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830088" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 141 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613787.1) and transcript sequence (IACG01004426.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016830088.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830088" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hdhd5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GFF1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GFF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07511", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07511", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757691", "url": "https://www.ncbi.nlm.nih.gov/gene/100757691", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757691", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757691", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GFF1", "url": "https://www.orthodb.org/?gene=A0A9J7GFF1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14269", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14269", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14269:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14269:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QH90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QH90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALSGLAALRAGRGVWRLPARLSAGLPGCWLRRGYVVGRAESPPTFGLLFDIDGVLVRGHRVIPAALEAFGKLLNSQGQLRVPVVFVTNAGNILQQNKAQELSGLLGYKVDPDQVILSHSPLKLFLQYHNKRMLVSGQGPVVENARSLGFQNVVTIDELRLAFPELDMVDLARRPKNMVIRTGDWILQEWRVTSIDGPLLVFWQCLRNDFAAIEGILLLGEPVRWETSLQLILDVLLSNGNPGTGLETAPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYRKVTGKELKYEGMTGKPSILTYQYAEDIIRQQAERWGWSAPIRKLYAIGDNPVSDVYGANLFNQYLQMTKRGEKEHGAGGQQKQRPSTTQSCVSILVCTGIHNCQGPGPKAPTSGGAELPFHGHRDFSFSPELLEASHVVHDVNEAVQLVFHQEGWA", "length": 445, "header": "tr|A0A9J7GFF1-1|A0A9J7GFF1_CRIGR Isoform 1 of Haloacid dehalogenase-like hydrolase domain-containing 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hdhd5 PE=4 SV=1 CANONICAL=A0A9J7GFF1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QH90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFF1/entry#A0A8C2QH90-1", "sequence": { "sequence": "MAALSGLAALRAGRGVWRLPARLSAGLPGCWLRRGYVVGRAESPPTFGLLFDIDGVLVRGHRVIPAALEAFGKLLNSQGQLRVPVVFVTNAGNILQQNKAQELSGLLGYKVDPDQVILSHSPLKLFLQYHNKRMLVSGQGPVVENARSLGFQNVVTIDELRLAFPELDMVDLARRPKNMCLRNDFAAIEGILLLGEPVRWETSLQLILDVLLSNGNPGTGLETAPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYRKVTGKELKYEGMTGKPSILTYQYAEDIIRQQAERWGWSAPIRKLYAIGDNPVSDVYGANLFNQYLQMTKRGEKEHGAGGQQKQRPSTTQSCVSILVCTGIHNCQGPGPKAPTSGGAELPFHGHRDFSFSPELLEASHVVHDVNEAVQLVFHQEGWA", "length": 419, "header": "tr|A0A8C2QH90-1|A0A9J7GFF1_CRIGR Computationally mapped isoform of Haloacid dehalogenase-like hydrolase domain-containing 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Hdhd5 PE=4 SV=1 CANONICAL=A0A9J7GFF1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFF1-1", "url": 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"synonym", "evidence": [ { "id": "XP_027260137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260137" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 29 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JIP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 29 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027260137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260137" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027260137.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260137" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JIP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JIP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755582", "url": "https://www.ncbi.nlm.nih.gov/gene/100755582", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24120:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24120:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24171:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24171:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173:SF89", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173:SF89", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260137", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GR51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GR51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPCGVSHVSAGRGPVRARTNPAAPARPGAALALSVCRRGSAARPLCGRRRRAAGGREGGERGEAGGEPGEADCGGDACRMSFKKETPLANAAFWAARRGNLALLKLLLNSGRVDVDCRDSHGTTLLMVASYAGHIDCVRELVLQGADINLQRESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 386, "header": "tr|A0A9J7JIP9-1|A0A9J7JIP9_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 29 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#A0A9J7FKV5-1", "sequence": { "sequence": "MCPCGVSHVSAGRGPVRARTNPAAPARPGAALALSVCRRGSAARPLCGRRRRAAGGREGGERGEAGGEPGEADCGGDACRMSFKKETPLANAAFWAARRGNLALLKLLLNSGRVDVDCRDSSGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 353, "header": "tr|A0A9J7FKV5-1|A0A9J7JIP9_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 29 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GR51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#A0A9J7GR51-1", "sequence": { "sequence": "MFGLWRELSWLPHNMMKLKKGKGTDHMQKRPNTKSSHFLATHACENTLQESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 282, "header": "tr|A0A9J7GR51-1|A0A9J7GR51_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#A0A9J7GRA1-1", "sequence": { "sequence": "MQSRCLLGLFLKEVDHGTTLLMVASYAGHIDCVRELVLQGADINLQRESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 280, "header": "tr|A0A9J7GRA1-1|A0A9J7GRA1_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 29 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#A0A9J7JIP9-1", "sequence": { "sequence": "MCPCGVSHVSAGRGPVRARTNPAAPARPGAALALSVCRRGSAARPLCGRRRRAAGGREGGERGEAGGEPGEADCGGDACRMSFKKETPLANAAFWAARRGNLALLKLLLNSGRVDVDCRDSHGTTLLMVASYAGHIDCVRELVLQGADINLQRESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 386, "header": "tr|A0A9J7JIP9-1|A0A9J7JIP9_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 29 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIP9/entry#A0A9J7JUZ0-1", "sequence": { "sequence": "MENMHGTTLLMVASYAGHIDCVRELVLQGADINLQRESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNIETVALLLEAGADPALRNKANELPAELTKNERILHLLRSKEGPGKNEFGSTLDR", "length": 269, "header": "tr|A0A9J7JUZ0-1|A0A9J7JUZ0_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 29 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ankrd29 PE=4 SV=1 CANONICAL=A0A9J7JIP9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKV5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755582", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755582", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 319, "end_pos": 321 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"name": "Tetratricopeptide repeat protein 23 isoform X7", "type": "synonym", "evidence": [ { "id": "A0A9J7JJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 23 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_027263923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263923" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263923" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JJR9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JJR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768827", "url": "https://www.ncbi.nlm.nih.gov/gene/100768827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAVSHIVTLCLTFGGSITAVFQDNHTTSHSHQECVSFLASPCPYHRFLCSEDNVFENMQESQEVLMPNHLDEVIAAVSVTSKKRIPNKLLQTALFQPPREKLHLCEERAKSYSSSCEYKQAIQELVRCVALTRICYGDSHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIENPYHDNTDIFKCSIDLFCTLGKALLSLQKFKEASENLVKAERLSKEMLQCGNIIKEEWVEIQARIKLFFAQLYQGQKRSKEALPYYQKALEYTELTKDERSLECVPVLRELAGVEQALGFHDAAVSHFSRAHLIVLSKNPSPEEAADSAHFIARAAVASGKQDHRDEPGMPLLTIPAPENNPCQYRTLLQWTSMHSVLSSKAGHVTMVRSSFRTWRDMAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKVKWEPALI", "length": 498, "header": "tr|A0A9J7JJR9-1|A0A9J7JJR9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FM92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7FM92-1", "sequence": { "sequence": "MQESQEVLMPNHLDEVIAAVSVTSKKRIPNKLLQTALFQPPREKLHLCEERAKSYSSSCEYKQAIQELVRCVALTRICYGDSHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIENPYHDNTDIFKCSIDLFCTLGKALLSLQKFKEASENLVKAERLSKEMLQCGNIIKEEWVEIQARIKLFFAQLYQGQKRSKEALPYYQKALEYTELTKDERSLECVPVLRELAGVEQALGFHDAAVSHFSRAHLIVLSKNPSPEEAADSAHFIARAAVASGKQDHRDEPGMPLLTIPAPENNPCQYRTLLQWTSMHSVLSSKAGHVTMVRSSFRTWRDMAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKVKWEPALI", "length": 440, "header": "tr|A0A9J7FM92-1|A0A9J7JJR9_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7FMU6-1", "sequence": { "sequence": "MRAVSHIVTLCLTFGGSITAVFQDNHTTSHSHQECVSFLASPCPYHRFLCSDNVFENMQESQEVLMPNHLDEVIAAVSVTSKKRIPNKLLQTALFQPPREKLHLCEERAKSYSSSCEYKQAIQELVRCVALTRICYGDSHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIENPYHDNTDIFKCSIDLFCTLGKALLSLQKFKEASENLVKAERLSKEMLQCGNIIKEEWVEIQARIKLFFAQLYQGQKRSKEALPYYQKALEYTELTKDERSLECVPVLRELAGVEQALGFHDAAVSHFSRAHLIVLSKNPSPEEAADSAHFIARAAVASGKQDHRDEPGMPLLTIPAPENNPCQYRTLLQWTSMHSVLSSKAGHVTMVRSSFRTWRDMAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKVKWEPALI", "length": 497, "header": "tr|A0A9J7FMU6-1|A0A9J7JJR9_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7FQG2-1", "sequence": { "sequence": "MRAVSHIVTLCLTFGGSITAVFQDNHTTSHSHQECVSFLASPCPYHRFLCSEDNVFENMQESQEVLMPNHLDEVIAAVSVTSKKRIPNKLLQTALFQPPREKLHLCEERAKSYSSSCEYKQAIQELVRCVALTRICYGDSHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIENPYHDNTDIFKCSIDLFCTLGKALLSLQKFKEASENLVKAERLSKEMLQCGNIIKEEWVEIQARIKLFFAQLYQGQKRSKEALPYYQKALEYTELTKDERSLECVPVLRELAGVEQALGFHDAAVSHFSRAHLIVLSKNPSPEEAADSAHFIARAAVASGKQDHRDMAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKVKWEPALI", "length": 447, "header": "tr|A0A9J7FQG2-1|A0A9J7JJR9_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7FQR7-1", "sequence": { "sequence": "MAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKCVQIETFLNGSQDKRTLATQQTIDTLSKNSEAATKPRQSLKAKMALCTIPGKAKHNVAD", "length": 151, "header": "tr|A0A9J7FQR7-1|A0A9J7JJR9_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7JJR9-1", "sequence": { "sequence": "MRAVSHIVTLCLTFGGSITAVFQDNHTTSHSHQECVSFLASPCPYHRFLCSEDNVFENMQESQEVLMPNHLDEVIAAVSVTSKKRIPNKLLQTALFQPPREKLHLCEERAKSYSSSCEYKQAIQELVRCVALTRICYGDSHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIENPYHDNTDIFKCSIDLFCTLGKALLSLQKFKEASENLVKAERLSKEMLQCGNIIKEEWVEIQARIKLFFAQLYQGQKRSKEALPYYQKALEYTELTKDERSLECVPVLRELAGVEQALGFHDAAVSHFSRAHLIVLSKNPSPEEAADSAHFIARAAVASGKQDHRDEPGMPLLTIPAPENNPCQYRTLLQWTSMHSVLSSKAGHVTMVRSSFRTWRDMAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKVKWEPALI", "length": 498, "header": "tr|A0A9J7JJR9-1|A0A9J7JJR9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJR9/entry#A0A9J7JLB0-1", "sequence": { "sequence": "MAEQYFQESMTHVKDSEGAGRVKFLSIQDEFCNFLQITGQKERAIMILRESLEAKVGAFGDFSPEVAETYRILGRADLAQGNHIGAHAKLKKGIRGQGEDPSITKECVQIETFLNGSQDKRTLATQQTIDTLSKNSEAATKPRQSLKAKMALCTIPGKAKHNVAD", "length": 165, "header": "tr|A0A9J7JLB0-1|A0A9J7JLB0_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 23 isoform X11 OS=Cricetulus griseus OX=10029 GN=Ttc23 PE=4 SV=1 CANONICAL=A0A9J7JJR9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM92" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FM92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM92" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768827", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768827", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JJG2-1", "uniprot_ac": "A0A9J7JJG2", "uniprot_id": "A0A9J7JJG2_CRIGR", "mass": { "chemical_mass": 163832.0, "monoisotopic_mass": 163832.0 }, "refseq": { "ac": "XP_027266393", "name": "Fanconi anemia group A protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266393" }, "gene_names": [ { "name": "Fanca", "type": "recommended", "evidence": [ { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" } ] }, { "name": "Fanca", "type": "synonym", "evidence": [ { "id": "XP_027266393", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266393" } ] } ], "protein_names": [ { "name": "Fanconi anemia group A protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027266393", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266393" }, { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266393" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fanca", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2", "locus": {} } ], "crossref": [ { "id": "100761220", "url": "https://www.ncbi.nlm.nih.gov/gene/100761220", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761220", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JJG2", "url": "https://www.orthodb.org/?gene=A0A9J7JJG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12047", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12047", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12047:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12047:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03511", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03511", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15865", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15865", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266393", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTP8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYSLLSYFSEHAIIKEEAFLYVAVDMYLKLMQLFVDGETRTGLTQASKSLKLQGHSLLQGSPVQLITEARIFLLQLIPQCPEKCFSNMTELLAGRRDYDPEMSNALLQRRQAVPSFDLSQEPHLF", "length": 1453, "header": "tr|A0A9J7JJG2-1|A0A9J7JJG2_CRIGR Isoform 1 of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7FQS5-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKQQSSVWGRS", "length": 457, "header": "tr|A0A9J7FQS5-1|A0A9J7JJG2_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7FR84-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQVSITKPRHTAVVPKLSPGLGKYKLYSKATVAAQPSASL", "length": 1057, "header": "tr|A0A9J7FR84-1|A0A9J7JJG2_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7FRJ2-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYSLLSYFSEHAIIKEEAFLYVAVDMYLKLMQLFVDGETRTGLTQASKSLKLQGHSLLQGSPVQLITEARIFLLQLIPQCPEKCFSNMTELLAGRRDYDPEMSNALLQRRQAVPSFDLSQEPHLF", "length": 1452, "header": "tr|A0A9J7FRJ2-1|A0A9J7JJG2_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7FTC1-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYI", "length": 924, "header": "tr|A0A9J7FTC1-1|A0A9J7JJG2_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FV68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7FV68-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKQSSVWGRS", "length": 456, "header": "tr|A0A9J7FV68-1|A0A9J7JJG2_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7GTP8-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWYVCEVCCSCGRYSCFAGKHGILNTLMVAVANWV", "length": 326, "header": "tr|A0A9J7GTP8-1|A0A9J7GTP8_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X14 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7JF22-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYR", "length": 1331, "header": "tr|A0A9J7JF22-1|A0A9J7JF22_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7JJG2-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYSLLSYFSEHAIIKEEAFLYVAVDMYLKLMQLFVDGETRTGLTQASKSLKLQGHSLLQGSPVQLITEARIFLLQLIPQCPEKCFSNMTELLAGRRDYDPEMSNALLQRRQAVPSFDLSQEPHLF", "length": 1453, "header": "tr|A0A9J7JJG2-1|A0A9J7JJG2_CRIGR Isoform 1 of Fanconi anemia group A protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7JLF1-1", "sequence": { "sequence": "MEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYSLLSYFSEHAIIKEEAFLYVAVDMYLKLMQLFVDGETRTGLTQASKSLKLQGHSLLQGSPVQLITEARIFLLQLIPQCPEKCFSNMTELLAGRRDYDPEMSNALLQRRQAVPSFDLSQEPHLF", "length": 1201, "header": "tr|A0A9J7JLF1-1|A0A9J7JLF1_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JM59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7JM59-1", "sequence": { "sequence": "MFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWCSVYSGHVCCGMIAVDSLKRFFSHTLTQILIYKPVLKVADAIQMQKEWSFAKTCHLLTTLYCRVFVTLGPEESVGRLQEVLEMEEVNWKHVLSCLSTLVVCFPEAQQLVKDWVASLMTRAFESCHLDSMVTAFLIVRQATLEGPFVFPSYADWFKESFGSSLGYHSCSKKALVFLFKFLSDLVPWEPPRYMQVHIFHPPLVPSKYHSLLTDYISLAKTRLVDLKVSVENMGLYEDLSSSRDIAEPQSQAIQDVEKAIVVFEQTGKIPMPVMEASIFRRPYFLSHFLPALLTPRVLPEVPDSRVAFIETLKRADKIPSSLYNAYCQACATAEEKQPKNATPGKKTKPDCAEQPLGLLSAALEELRALMTDPTQYDVISAQVAVISERLNAALGHNNDDGSLRRSKIQLSVLTPTLQRQDQTVVDLLLTAFCQNLMVASSFVSPERQSPWAVLFVRTLCGHMLIPAVLTRLCQLLYHQGPSLSTPHVLGLAALAVHLGECGSMLPEVDPGILAPAGSLCVPEFLNSLLTCRTRESLLFCMKFCTAAISYCLCKFSAQPHVALHNYLSPGLIKRFQFIVLRVFSETRAPCPPEHTASLSWRPLYLPSADWQSAALSLWAWNSFQEMLKEKEFYLTFRDWIQLELEIQPEADILSGSERYDFHQWAIYEHFFPAPSALGGCDGDLVAACTVLVSELMDFYQSSRSYNHSQDSDLVLGGRTGNEDILSRLQEMAADLELDQGSSVSYGCSASQSHILFLVFKRRLQALASGDSMATSLRRQRELLICKRLLLRLPPSVLMGSPRVGQPVSPNCEEFFNLVNSELRNFCCHGSVLTHDITMHFFRGLLNVCFRSQDPALVTNMTLTECQTKCPMILTSALLWWSRLEPVLYSRWKKCHQSTLPRELQRLQEAQEFASKFLSDSASPAPSPAWISAAALHFAIREVRKENVKAHLKKLDCERKELLISLLFFSLMSLLSSYLTQQDTAEYLKAMDICAEVLECLERRKVSWLMLFQLTETDAELGHLLHLAPGQHTRLLPFAFYSLLSYFSEHAIIKEEAFLYVAVDMYLKLMQLFVDGETRTGLTQASKSLKLQGHSLLQGSPVQLITEARIFLLQLIPQCPEKCFSNMTELLAGRRDYDPEMSNALLQRRQAVPSFDLSQEPHLF", "length": 1297, "header": "tr|A0A9J7JM59-1|A0A9J7JM59_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X9 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2/entry#A0A9J7JMZ6-1", "sequence": { "sequence": "MSGSPARGAAFRGGPLGPRKSWTELLAGRVKKQKYNPERERKLKDSALQLLRYHQNMNDLLLEVEDPQCKKLCLSKLIDCDSASAYSDRSSSFIGSAFRDQALRLGVPVGLLSARVFACSVQQVCMEPSHPVLLSSEQRKKLSSLLEIAQHLLAHNMFSRLTFCQELWKAQNSLLLEAVWCLHMHSVVSLQELLQSHPDTQTMTMWLFRNLCILCEQIDASSPSSDTTNTMLSGFVELLVSRGFQESWNRRPMEPEKMPQVATDVLQRMLTFALDTLDADPQVTSAYQAVRGWYVCEVCCSCGRYSCFAGKHGILNTLMV", "length": 320, "header": "tr|A0A9J7JMZ6-1|A0A9J7JMZ6_CRIGR Computationally mapped isoform of Fanconi anemia group A protein isoform X15 OS=Cricetulus griseus OX=10029 GN=Fanca PE=4 SV=1 CANONICAL=A0A9J7JJG2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 632, "start_aa": "Thr", "end_pos": 632, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr632", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FQS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Fanconi anaemia nuclear complex", "id": "GO:0043240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043240", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "interstrand cross-link repair", "id": "GO:0036297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036297", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" } ], "pmid": "" }, { "name": "regulation of regulatory T cell differentiation", "id": "GO:0045589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045589", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1149, "end_pos": 1151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1415, "end_pos": 1417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 630, "end_pos": 632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 996, "end_pos": 998, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" }, { "id": "PF03511", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03511" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fanconi anaemia group A protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 1220, "end_pos": 1429, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" }, { "id": "PF15865", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15865" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fanconi anaemia group A protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 519, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" }, { "id": "PF24783", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fanconi anaemia group A protein arcN subdomain", "eco_id": "ECO_0000259", "start_pos": 645, "end_pos": 877, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJG2" }, { "id": "PF24781", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24781" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fanconi anaemia group A protein helical", "eco_id": "ECO_0000259", "start_pos": 539, "end_pos": 620, "start_aa": "Gln", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 632 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1149, "end_pos": 1151 }, { "start_pos": 1415, "end_pos": 1417 }, { "start_pos": 630, "end_pos": 632 }, { "start_pos": 996, "end_pos": 998 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GBF7-1", "uniprot_ac": "A0A9J7GBF7", "uniprot_id": "A0A9J7GBF7_CRIGR", "mass": { "chemical_mass": 275735.0, "monoisotopic_mass": 275735.0 }, "refseq": { "ac": "XP_007619545", "name": "spatacsin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007619545" }, "gene_names": [ { "name": "Spg11", "type": "recommended", "evidence": [ { "id": "A0A9J7GBF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ] }, { "name": "Spg11", "type": "synonym", "evidence": [ { "id": "XP_007619545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007619545" } ] } ], "protein_names": [ { "name": "Spatacsin isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7GBF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7/entry#names_and_taxonomy" } ] }, { "name": "spatacsin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007619545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007619545" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 108 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613677.1) and transcript sequence (IACG01023458.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007619545.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007619545", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007619545" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spg11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7", "locus": {} } ], "crossref": [ { "id": "100765400", "url": "https://www.ncbi.nlm.nih.gov/gene/100765400", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765400", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GBF7", "url": "https://www.orthodb.org/?gene=A0A9J7GBF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13650", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13650", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13650:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13650:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14649", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14649", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007619545", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007619545", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G714", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G714", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G714-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G714-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAKPGPGSLASPGRAGAMERVLPMLLVQIPAKETAQLGSRAQLHREQEALGSLTAAGSLQVLSLAPGSRGGSSCCLQGPFGHFVWEDSHDSSISTDKPKLLAVSEEYELLAYEFDLKDGGCDATLLHSCCGRTLQKLIEDQGVSISFKSLRILSFHNKTALLLINRCLILRIVFAGRESGSVLDCFPLLLPAQTADTIIDTQLCRGLLFVLSTLGWIYIFDTVDGMHVAHVDLALLQEDSEQQEAANVSSFTSLKVSEDLDVLVIVSSSNTAVAVNLNLYFRQHPGHLLCERTLEDLPIEGLTGIDEDDLANSVHNMKLTKVSFQVDRSWRAQLSSLSETRSSKPEVSCCAPWFQGVLRLESPESGNHTPVVPNHIFIPGDATCRQCAFPQKGHIRTSDPGLWKTMHLSEQEQPAELKCMSVTAFTALFTWAVGTTSCTIVLWDLETQSTQCFSLSQKCTPVDSSGNQQLCLVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLTPSSKSPVPDQLHHHFSSQLYLRQVEEMMPALDLLCSAIRESDSETQSKHFAEQLLHLTLSFLNKQIKELFVHTEVIDEHLQKGVDILTSYINELRTFMIKFPWKPADATDEYDINQDVLTVKEGKIWEKLNFEEVIADAILNNKIPEAQTFFRITNHSAQRLEELVRIGLDLVFDSLKRNNVEEASMLLRNMGFSVEDELLKICFYTTDKNIRDFLVEILKEKECFSEKERRTIDFVHQVEKFYSGRFQENVQMQPFPSVFRYWIKEQDYLKHKSILDTFLKHDQKDEFNDQHQRIALNWAHWWDQQTQECILLPRISPEEYKAHSPDSLWRYLTARHDWSNISLWIEEFQTQETGPPHQNKWPPLSADIIDQNTCCNNYMKNKILDKLARSGTFLASELEDFELFLLRLSRIGGVMQDALPVQSYRASGGWDFHSHFILYCLEHDLQHLLYVYLDYYKLSPGNCPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYAPGGVSQVIQNEESENCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSILPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTTNRLPHFSSPDLVSKYAVVERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYTLGLASSHSPSVGAACVCFLELLGLGSLKLRVDMKMANVILGYKCRNEDSQPSFTRESLAEKLSKLADGDKATTEELLVLLEESVWSSIAQQGLNSSDYRLSSESSSQWTLVLQFCTVHNLKLSVSYLRECAKANDWLQFLVHSQLHSYHPEEVKSLLQYFSPVLQSHLKLAFEKLSSGSISREDGDQDHKYLQELQKNKEEMRDFFEILHQCSEESASWCWLLTEAVKHRAPILSVLASCLQGASAVPCLCVWIVTSVEDRVAAEAMGHIQASVEDHSWSLEDLSMIWRTVLTRQKSHTLIRGFRLFIKDSPLLLIMEMYELCMFFKNYEKAKVKLVEFQKSLETLDTMAVRVLPSTWMKDQVCFLLKLMPQQCQTQYELGKVLQLLVGTEHLFSDGPDVQKLCVLSQILKDTPVAINPAVITSYSAENFQHECRSILEKLKADGQFAVARRVAELAALPVDSLVIEQLAQEMKTLKHTQQWPRKHTRIDFWKKCHEIFKKNSISNRAASSFFSSQVPVVSEHPTEQDDLEERHLLLTLVGHWLAREEPVPLEELEALEKQTWICRITQHARPEETRPSPSQQKSADVELSFDSLADEFSFSKLAALNTSKYLDPNGLPSKEMCENTLDCKERESLNVLVGHLLDGGCVHEASRVCRYFHFYSQDVALVLHCRALASAEASVEDGHSEIRALLPSAVLPEDQESPSVPLRKVHSASSLDSQSFMMAPSTDEVARNLQALTSKCLHGKNYCRQVLCLYELAKELGCSYADVAARDSETMLRTILASQRPDKCRQAQVFISTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAESQTFLQLTTVCQDRTLVGMKLLDRIPSIPHGELSCTTELLILAHHCFTFTCHMEGIMRVLQAARMLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGVQLKQLLLKALTLMLDAAESYAKDSCVRQALHCKRLTKLITLQIHFLNTGQNTMLINLSHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEVLYQQVILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLHYKLAYEHKFFEIVNVLLKDPQTGCCLKDMLAG", "length": 2434, "header": "tr|A0A9J7GBF7-1|A0A9J7GBF7_CRIGR Isoform 1 of Spatacsin isoform X4 OS=Cricetulus griseus OX=10029 GN=Spg11 PE=4 SV=1 CANONICAL=A0A9J7GBF7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G714-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7/entry#A0A9J7G714-1", "sequence": { "sequence": "MTAKPGPGSLASPGRAGAMERVLPMLLVQIPAKETAQLGSRAQLHREQEALGSLTAAGSLQVLSLAPGSRGGSSCCLQGPFGHFVWEDSHDSSISTDKPKLLAVSEEYELLAYEFDLKDGGCDATLLHSCCGRTLQKLIEDQGVSISFKSLRILSFHNKTALLLINRCLILRIVFAGRESGSVLDCFPLLLPAQTADTIIDTQLCRGLLFVLSTLGWIYIFDTVDGMHVAHVDLALLQEDSEQQEAANVSSFTSLKVSEDLDVLVIVSSSNTAVAVNLNLYFRQHPGHLLCERTLEDLPIEGLTGIDEDDLANSVHNMKLTKVSFQVDRSWRAQLSSLSETRSSKPEVSCCAPWFQGVLRLESPESGNHTPVVPNHIFIPGDATCRQCAFPQKGHIRTSDPGLWKTMHLSEQEQPAELKCMSVTAFTALFTWAVGTTSCTIVLWDLETQSTQCFSLSQKCTPVDSSGNQQLCLVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLTPSSKSPVPDQLHHHFSSQLYLRQVEEMMPALDLLCSAIRESDSETQSKHFAEQLLHLTLSFLNKQIKELFVHTEVIDEHLQKGVDILTSYINELRTFMIKFPWKPADATDEYDINQDVLTVKEGKIWEKLNFEEVIADAILNNKIPEAQTFFRITNHSAQRLEELVRIGLDLVFDSLKRNNVEEASMLLRNMGFSVEDELLKICFYTTDKNIRDFLVEILKEKECFSEKERRTIDFVHQVEKFYSGRFQENVQMQPFPRYWIKEQDYLKHKSILDTFLKHDQKDEFNDQHQRIALNWAHWWDQQTQECILLPRISPEEYKAHSPDSLWRYLTARHDWSNISLWIEEFQTQETGPPHQNKWPPLSADIIDQNTCCNNYMKNKILDKLARSGTFLASELEDFELFLLRLSRIGGVMQDALPVQSYRASGGWDFHSHFILYCLEHDLQHLLYVYLDYYKLSPGNCPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYAPGGVSQVIQNEESENCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSILPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTTNRLPHFSSPDLVSKYAVVERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYTLGLASSHSPSVGAACVCFLELLGLGSLKLRVDMKMANVILGYKCRNEDSQPSFTRESLAEKLSKLADGDKATTEELLVLLEESVWSSIAQQGLNSSDYRLSSESSSQWTLVLQFCTVHNLKLSVSYLRECAKANDWLQFLVHSQLHSYHPEEVKSLLQYFSPVLQSHLKLAFEKLSSGSISREDGDQDHKYLQELQKNKEEMRDFFEILHQCSEESASWCWLLTEAVKHRAPILSVLASCLQGASAVPCLCVWIVTSVEDRVAAEAMGHIQASVEDHSWSLEDLSMIWRTVLTRQKSHTLIRGFRLFIKDSPLLLIMEMYELCMFFKNYEKAKVKLVEFQKSLETLDTMAVRVLPSTWMKDQVCFLLKLMPQQCQTQYELGKVLQLLVGTEHLFSDGPDVQKLCVLSQILKDTPVAINPAVITSYSAENFQHECRSILEKLKADGQFAVARRVAELAALPVDSLVIEQLAQEMKTLKHTQQWPRKHTRIDFWKKCHEIFKKNSISNRAASSFFSSQVPVVSEHPTEQDDLEERHLLLTLVGHWLAREEPVPLEELEALEKQTWICRITQHARPEETRPSPSQQKSADVELSFDSLADEFSFSKLAALNTSKYLDPNGLPSKEMCENTLDCKERESLNVLVGHLLDGGCVHEASRVCRYFHFYSQDVALVLHCRALASAEASVEDGHSEIRALLPSAVLPEDQESPSVPLRKVHSASSLDSQSFMMAPSTDEVARNLQALTSKCLHGKNYCRQVLCLYELAKELGCSYADVAARDSETMLRTILASQRPDKCRQAQVFISTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAESQTFLQLTTVCQDRTLVGMKLLDRIPSIPHGELSCTTELLILAHHCFTFTCHMEGIMRVLQAARMLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGVQLKQLLLKALTLMLDAAESYAKDSCVRQALHCKRLTKLITLQIHFLNTGQNTMLINLSHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEVLYQQVILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLHYKLAYEHKFFEIVNVLLKDPQTGCCLKDMLAG", "length": 2431, "header": "tr|A0A9J7G714-1|A0A9J7GBF7_CRIGR Computationally mapped isoform of Spatacsin isoform X4 OS=Cricetulus griseus OX=10029 GN=Spg11 PE=4 SV=1 CANONICAL=A0A9J7GBF7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7/entry#A0A9J7GBF7-1", "sequence": { "sequence": "MTAKPGPGSLASPGRAGAMERVLPMLLVQIPAKETAQLGSRAQLHREQEALGSLTAAGSLQVLSLAPGSRGGSSCCLQGPFGHFVWEDSHDSSISTDKPKLLAVSEEYELLAYEFDLKDGGCDATLLHSCCGRTLQKLIEDQGVSISFKSLRILSFHNKTALLLINRCLILRIVFAGRESGSVLDCFPLLLPAQTADTIIDTQLCRGLLFVLSTLGWIYIFDTVDGMHVAHVDLALLQEDSEQQEAANVSSFTSLKVSEDLDVLVIVSSSNTAVAVNLNLYFRQHPGHLLCERTLEDLPIEGLTGIDEDDLANSVHNMKLTKVSFQVDRSWRAQLSSLSETRSSKPEVSCCAPWFQGVLRLESPESGNHTPVVPNHIFIPGDATCRQCAFPQKGHIRTSDPGLWKTMHLSEQEQPAELKCMSVTAFTALFTWAVGTTSCTIVLWDLETQSTQCFSLSQKCTPVDSSGNQQLCLVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLTPSSKSPVPDQLHHHFSSQLYLRQVEEMMPALDLLCSAIRESDSETQSKHFAEQLLHLTLSFLNKQIKELFVHTEVIDEHLQKGVDILTSYINELRTFMIKFPWKPADATDEYDINQDVLTVKEGKIWEKLNFEEVIADAILNNKIPEAQTFFRITNHSAQRLEELVRIGLDLVFDSLKRNNVEEASMLLRNMGFSVEDELLKICFYTTDKNIRDFLVEILKEKECFSEKERRTIDFVHQVEKFYSGRFQENVQMQPFPSVFRYWIKEQDYLKHKSILDTFLKHDQKDEFNDQHQRIALNWAHWWDQQTQECILLPRISPEEYKAHSPDSLWRYLTARHDWSNISLWIEEFQTQETGPPHQNKWPPLSADIIDQNTCCNNYMKNKILDKLARSGTFLASELEDFELFLLRLSRIGGVMQDALPVQSYRASGGWDFHSHFILYCLEHDLQHLLYVYLDYYKLSPGNCPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYAPGGVSQVIQNEESENCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSILPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTTNRLPHFSSPDLVSKYAVVERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYTLGLASSHSPSVGAACVCFLELLGLGSLKLRVDMKMANVILGYKCRNEDSQPSFTRESLAEKLSKLADGDKATTEELLVLLEESVWSSIAQQGLNSSDYRLSSESSSQWTLVLQFCTVHNLKLSVSYLRECAKANDWLQFLVHSQLHSYHPEEVKSLLQYFSPVLQSHLKLAFEKLSSGSISREDGDQDHKYLQELQKNKEEMRDFFEILHQCSEESASWCWLLTEAVKHRAPILSVLASCLQGASAVPCLCVWIVTSVEDRVAAEAMGHIQASVEDHSWSLEDLSMIWRTVLTRQKSHTLIRGFRLFIKDSPLLLIMEMYELCMFFKNYEKAKVKLVEFQKSLETLDTMAVRVLPSTWMKDQVCFLLKLMPQQCQTQYELGKVLQLLVGTEHLFSDGPDVQKLCVLSQILKDTPVAINPAVITSYSAENFQHECRSILEKLKADGQFAVARRVAELAALPVDSLVIEQLAQEMKTLKHTQQWPRKHTRIDFWKKCHEIFKKNSISNRAASSFFSSQVPVVSEHPTEQDDLEERHLLLTLVGHWLAREEPVPLEELEALEKQTWICRITQHARPEETRPSPSQQKSADVELSFDSLADEFSFSKLAALNTSKYLDPNGLPSKEMCENTLDCKERESLNVLVGHLLDGGCVHEASRVCRYFHFYSQDVALVLHCRALASAEASVEDGHSEIRALLPSAVLPEDQESPSVPLRKVHSASSLDSQSFMMAPSTDEVARNLQALTSKCLHGKNYCRQVLCLYELAKELGCSYADVAARDSETMLRTILASQRPDKCRQAQVFISTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAESQTFLQLTTVCQDRTLVGMKLLDRIPSIPHGELSCTTELLILAHHCFTFTCHMEGIMRVLQAARMLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGVQLKQLLLKALTLMLDAAESYAKDSCVRQALHCKRLTKLITLQIHFLNTGQNTMLINLSHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEVLYQQVILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLHYKLAYEHKFFEIVNVLLKDPQTGCCLKDMLAG", "length": 2434, "header": "tr|A0A9J7GBF7-1|A0A9J7GBF7_CRIGR Isoform 1 of Spatacsin isoform X4 OS=Cricetulus griseus OX=10029 GN=Spg11 PE=4 SV=1 CANONICAL=A0A9J7GBF7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JS78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7/entry#A0A9J7JS78-1", "sequence": { "sequence": "MTAKPGPGSLASPGRAGAMERVLPMLLVQIPAKETAQLGSRAQLHREQEALGSLTAAGSLQVLSLAPGSRGGSSCCLQGPFGHFVWEDSHDSSISTDKPKLLAVSEEYELLAYEFDLKDGGCDATLLHSCCGRTLQKLIEDQGVSISFKSLRILSFHNKTALLLINRCLILRIVFAGRESGSVLDCFPLLLPAQTADTIIDTQLCRGLLFVLSTLGWIYIFDTVDGMHVAHVDLALLQEDSEQQEAANVSSFTSLKVSEDLDVLVIVSSSNTAVAVNLNLYFRQHPGHLLCERTLEDLPIEGLTGIDEDDLANSVHNMKLTKVSFQVDRSWRAQLSSLSETRSSKPEVSCCAPWFQGVLRLESPESGNHTPVVPNHIFIPGDATCRQCAFPQKGHIRTSDPGLWKTMHLSEQEQPAELKCMSVTAFTALFTWAVGTTSCTIVLWDLETQSTQCFSLSQKCTPVDSSGNQQLCLVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLTPSSKSPVPDQLHHHFSSQLYLRQVEEMMPALDLLCSAIRESDSETQSKHFAEQLLHLTLSFLNKQIKELFVHTEVIDEHLQKGVDILTSYINELRTFMIKFPWKPADATDEYDINQDVLTVKEGKIWEKLNFEEVIADAILNNKIPEAQTFFRITNHSAQRLEELVRIGLDLVFDSLKRNNVEEASMLLRNMGFSVEDELLKICFYTTDKNIRDFLVEILKEKECFSEKERRTIDFVHQVEKFYSGRFQENVQMQPFPSVFRYWIKEQDYLKHKSILDTFLKHDQKDEFNDQHQRIALNWAHWWDQQTQECILLPRISPEEYKAHSPDSLWRYLTARHDWSNISLWIEEFQTQETGPPHQNKWPPLSADIIDQNTCCNNYMKNKILDKLARSGTFLASELEDFELFLLRLSRIGGVMQDALPVQSYRASGGWDFHSHFILYCLEHDLQHLLYVYLDYYKLSPGNCPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYAPGGVSQVIQNEESENCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSILPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTTNRLPHFSSPDLVSKYAVVERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLSDYRLSSESSSQWTLVLQFCTVHNLKLSVSYLRECAKANDWLQFLVHSQLHSYHPEEVKSLLQYFSPVLQSHLKLAFEKLSSGSISREDGDQDHKYLQELQKNKEEMRDFFEILHQCSEESASWCWLLTEAVKHRAPILSVLASCLQGASAVPCLCVWIVTSVEDRVAAEAMGHIQASVEDHSWSLEDLSMIWRTVLTRQKSHTLIRGFRLFIKDSPLLLIMEMYELCMFFKNYEKAKVKLVEFQKSLETLDTMAVRVLPSTWMKDQVCFLLKLMPQQCQTQYELGKVLQLLVGTEHLFSDGPDVQKLCVLSQILKDTPVAINPAVITSYSAENFQHECRSILEKLKADGQFAVARRVAELAALPVDSLVIEQLAQEMKTLKHTQQWPRKHTRIDFWKKCHEIFKKNSISNRAASSFFSSQVPVVSEHPTEQDDLEERHLLLTLVGHWLAREEPVPLEELEALEKQTWICRITQHARPEETRPSPSQQKSADVELSFDSLADEFSFSKLAALNTSKYLDPNGLPSKEMCENTLDCKERESLNVLVGHLLDGGCVHEASRVCRYFHFYSQDVALVLHCRALASAEASVEDGHSEIRALLPSAVLPEDQESPSVPLRKVHSASSLDSQSFMMAPSTDEVARNLQALTSKCLHGKNYCRQVLCLYELAKELGCSYADVAARDSETMLRTILASQRPDKCRQAQVFISTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAESQTFLQLTTVCQDRTLVGMKLLDRIPSIPHGELSCTTELLILAHHCFTFTCHMEGIMRVLQAARMLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGVQLKQLLLKALTLMLDAAESYAKDSCVRQALHCKRLTKLITLQIHFLNTGQNTMLINLSHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEVLYQQVILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLHYKLAYEHKFFEIVNVLLKDPQTGCCLKDMLAG", "length": 2329, "header": "tr|A0A9J7JS78-1|A0A9J7JS78_CRIGR Computationally mapped isoform of Spatacsin isoform X6 OS=Cricetulus griseus OX=10029 GN=Spg11 PE=4 SV=1 CANONICAL=A0A9J7GBF7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G714", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G714" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G714", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G714" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "axonogenesis", "id": "GO:0007409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007409", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "axo-dendritic transport", "id": "GO:0008088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008088", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" }, { "name": "synaptic vesicle transport", "id": "GO:0048489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048489", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1040, "end_pos": 1042, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1327, "end_pos": 1329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1841, "end_pos": 1843, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2306, "end_pos": 2308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 704, "end_pos": 706, "annotation": "n_glycosylation_sequon" }, { "start_pos": 890, "end_pos": 892, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GBF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF7" }, { "id": "PF14649", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14649" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Spatacsin C-terminal", "eco_id": "ECO_0000259", "start_pos": 2086, "end_pos": 2378, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1040, "end_pos": 1042 }, { "start_pos": 1327, "end_pos": 1329 }, { "start_pos": 158, "end_pos": 160 }, { "start_pos": 1841, "end_pos": 1843 }, { "start_pos": 2306, "end_pos": 2308 }, { "start_pos": 248, "end_pos": 250 }, { "start_pos": 368, "end_pos": 370 }, { "start_pos": 704, "end_pos": 706 }, { "start_pos": 890, "end_pos": 892 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GBS2-1", "uniprot_ac": "A0A9J7GBS2", "uniprot_id": "A0A9J7GBS2_CRIGR", "mass": { "chemical_mass": 64334.0, "monoisotopic_mass": 64334.0 }, "refseq": { "ac": "XP_027278007", "name": "uncharacterized protein LOC113836409 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278007" }, "gene_names": [ { "name": "LOC113836409", "type": "recommended", "evidence": [ { "id": "A0A9J7GBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ] }, { "name": "LOC113836409", "type": "synonym", "evidence": [ { "id": "XP_027278007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278007" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113836409 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113836409 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027278007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278007" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278007" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836409", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GBS2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GBS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113836409", "url": "https://www.ncbi.nlm.nih.gov/gene/113836409", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836409", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836409", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GBS2", "url": "https://www.orthodb.org/?gene=A0A9J7GBS2", "database": "OrthoDB", "categories": [ "Protein 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Classification", "Other" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278007", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQLIYRPSN", "length": 571, "header": "tr|A0A9J7GBS2-1|A0A9J7GBS2_CRIGR Isoform 1 of Uncharacterized protein LOC113836409 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113836409 PE=4 SV=1 CANONICAL=A0A9J7GBS2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2/entry#A0A9J7G7C7-1", "sequence": { "sequence": "MGQTVTTPLSLTLSHWRDVQEYAHNQSVNVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIVTWEALVQDPPPWVRPFLHPKGPSLLPPSNRSNRPIPSAPTPPTPLIPPNPPSHSNLYPTVVKDTKAKEKKTPKVLPPGEDQLVDLLTEEPPPYPPLPPPPEAEADSAAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 447, "header": "tr|A0A9J7G7C7-1|A0A9J7GBS2_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113836409 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113836409 PE=4 SV=1 CANONICAL=A0A9J7GBS2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2/entry#A0A9J7GBS2-1", "sequence": { "sequence": "MRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQLIYRPSN", "length": 571, "header": "tr|A0A9J7GBS2-1|A0A9J7GBS2_CRIGR Isoform 1 of Uncharacterized protein LOC113836409 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113836409 PE=4 SV=1 CANONICAL=A0A9J7GBS2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2/entry#A0A9J7H2Q1-1", "sequence": { "sequence": "MRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQLIYRPSN", "length": 481, "header": "tr|A0A9J7H2Q1-1|A0A9J7H2Q1_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113836409 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC113836409 PE=4 SV=1 CANONICAL=A0A9J7GBS2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2/entry#A0A9J7JSD2-1", "sequence": { "sequence": "MGQTVTTPLSLTLSHWRDVQEYAHNQSVNVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIVTWEALVQDPPPWVRPFLHPKGPSLLPPSNRSNRPIPSAPTPPTPLIPPNPPSHSNLYPTVVKDTKAKEKKTPKVLPPGEDQLVDLLTEEPPPYPPLPPPPEAEADSAAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEADTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQLIYRPSN", "length": 375, "header": "tr|A0A9J7JSD2-1|A0A9J7JSD2_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113836409 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC113836409 PE=4 SV=1 CANONICAL=A0A9J7GBS2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7C7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7C7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836409", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836409", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" }, { "name": "DNA metabolic process", "id": "GO:0006259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006259", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 499, "end_pos": 571, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBS2" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 377, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 486, "end_pos": 488 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278856" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ralgds", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70", "locus": {} } ], "crossref": [ { "id": "A0A9J7GA70", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GA70", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17209", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17209", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771841", "url": "https://www.ncbi.nlm.nih.gov/gene/100771841", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771841", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771841", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GA70", "url": "https://www.orthodb.org/?gene=A0A9J7GA70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278856", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MU42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MU42-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G834", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G834", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G834-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G834-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCT8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGLWSPRTCGLSVASQAFSPGHVLKPLLRGAGVKPLAWLLSHLLCSLRKSFLSLAPALHLCDQGWTLPWRWASGRSNSQIRSSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKSRYGRCDALTASSRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 939, "header": "tr|A0A9J7GA70-1|A0A9J7GA70_CRIGR Isoform 1 of Ral guanine nucleotide dissociation stimulator isoform X2 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MU42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A8C2MU42-1", "sequence": { "sequence": "MVQRMWAEAAGPVGGAEPLFPGSRRSRSVWDAVRLEVGVPDSCPVVLHSFTQLDPDLPRLESSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKRYGRCDALTASSRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 917, "header": "tr|A0A8C2MU42-1|A0A8C2MU42_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator isoform X6 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G834-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A9J7G834-1", "sequence": { "sequence": "MSGLWSPRTCGLSVASQAFSPGHVLKPLLRGAGVKPLAWLLSHLLCSLRKSFLSLAPALHLCDQGWTLPWRWASGRSNSQIRSSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 926, "header": "tr|A0A9J7G834-1|A0A9J7GA70_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator isoform X2 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A9J7GA70-1", "sequence": { "sequence": "MSGLWSPRTCGLSVASQAFSPGHVLKPLLRGAGVKPLAWLLSHLLCSLRKSFLSLAPALHLCDQGWTLPWRWASGRSNSQIRSSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKSRYGRCDALTASSRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 939, "header": "tr|A0A9J7GA70-1|A0A9J7GA70_CRIGR Isoform 1 of Ral guanine nucleotide dissociation stimulator isoform X2 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A9J7GA76-1", "sequence": { "sequence": "MSGLWSPRTCGLSVASQAFSPGHVLKPLLRGAGVKPLAWLLSHLLCSLRKSFLSLAPALHLCDQGWTLPWRWASGRSNSQIRSSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKRYGRCDALTASSRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 938, "header": "tr|A0A9J7GA76-1|A0A9J7GA76_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator isoform X3 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A9J7GCT8-1", "sequence": { "sequence": "MVQRMWAEAAGPVGGAEPLFPGSRRSRSVWDAVRLEVGVPDSCPVVLHSFTQLDPDLPRLESSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKSRYGRCDALTASSRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 918, "header": "tr|A0A9J7GCT8-1|A0A9J7GCT8_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator isoform X5 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70/entry#A0A9J7JSW9-1", "sequence": { "sequence": "MVQRMWAEAAGPVGGAEPLFPGSRRSRSVWDAVRLEVGVPDSCPVVLHSFTQLDPDLPRLESSTQEIGEELINGVIYSISLRKVQLHQGATKGQRWLGCENDSALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFKRYGCILPYSSEDGGPQDQLRNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESEALSPAPVLSLKPETQLEPAPALLLASSRAVASVPEPEPEPEPASEPDLAPGPALASSPVVAPASEREPAPAPPLEPEPSLAPASELEPALSQTLELEPAPVPAPALEPSWLLPGATENGLDEKPHLLLFPPDLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNNVANCVITTCLGDQSMKASDRARVVEHWIEVARECRVLKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSFRVFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGAWFRAMERLSEAESYNLSCELEPPSESASNTLRSKKSTAIVKRWSDRQAPSTELSTSSSAHSKSCDQLRCGPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLKIAKGIF", "length": 905, "header": "tr|A0A9J7JSW9-1|A0A9J7JSW9_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator isoform X7 OS=Cricetulus griseus OX=10029 GN=Ralgds PE=4 SV=1 CANONICAL=A0A9J7GA70-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G834", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G834" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G834", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G834" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771841", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771841", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA70" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G860", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G860" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765284", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765284", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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This record is derived from a genomic sequence (NW_003613936.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641857" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9S9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nt5c1b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9", "locus": {} } ], "crossref": [ { "id": "A0A9J7G9S9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G9S9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755966", "url": "https://www.ncbi.nlm.nih.gov/gene/100755966", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755966", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755966", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G996", "url": "https://www.orthodb.org/?gene=A0A9J7G996", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G9S9", "url": "https://www.orthodb.org/?gene=A0A9J7G9S9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G9Z9", "url": "https://www.orthodb.org/?gene=A0A9J7G9Z9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GCA1", "url": "https://www.orthodb.org/?gene=A0A9J7GCA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GCA4", "url": "https://www.orthodb.org/?gene=A0A9J7GCA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GDW3", "url": "https://www.orthodb.org/?gene=A0A9J7GDW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JXA5", "url": "https://www.orthodb.org/?gene=A0A9J7JXA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31367:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31367:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641857", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G996", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G996", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G996-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G996-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9S9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9Z9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQMRRAGYPNHSLRCCPMRYHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRVSRDLMTNWGGEPQASWGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 646, "header": "tr|A0A9J7G9S9-1|A0A9J7G9S9_CRIGR Isoform 1 of Cytosolic 5'-nucleotidase 1B isoform X10 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G996-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7G996-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQMRRAGYPNHSLRCCPMRYHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKVELAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 632, "header": "tr|A0A9J7G996-1|A0A9J7G9S9_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X10 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7G9S9-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQMRRAGYPNHSLRCCPMRYHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRVSRDLMTNWGGEPQASWGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 646, "header": "tr|A0A9J7G9S9-1|A0A9J7G9S9_CRIGR Isoform 1 of Cytosolic 5'-nucleotidase 1B isoform X10 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7G9Z9-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 555, "header": "tr|A0A9J7G9Z9-1|A0A9J7G9Z9_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X18 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7GCA1-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKVELAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 574, "header": "tr|A0A9J7GCA1-1|A0A9J7GCA1_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X15 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7GCA4-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 571, "header": "tr|A0A9J7GCA4-1|A0A9J7GCA4_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X16 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7GDW3-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQMRRAGYPNHSLRCCPMRYHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 629, "header": "tr|A0A9J7GDW3-1|A0A9J7GDW3_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X12 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7JXA5-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQDHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSVSMLYEKIPSCARPRPPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 612, "header": "tr|A0A9J7JXA5-1|A0A9J7JXA5_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X14 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7K0H8-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQMRRAGYPNHSLRCCPMRYHHSCRRCLCAAEGTSPCRTIRIYIHMCLLCEQGRQITMIRGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKVELAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 616, "header": "tr|A0A9J7K0H8-1|A0A9J7K0H8_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X13 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S9/entry#A0A9J7KBG3-1", "sequence": { "sequence": "MSQTSLKQKKKNEPGMRYSKESLDADKRKDSDKSGARLSTQGSQELPVPNTDSRGYIVRNQWSRTSRSPSTGAPSVVDEPRSRNTVVKVELAPNSSATSRTSSASPSQHETSPPPQAAEKPSVQQTQQTRLVTQMDSQPPTPPEPEPSTRRTSKMHASNDPWTHRDTRDPRDTQLREYAHSCDSRELIPKPVREYPRTPPTEWKSYVQRRLQYGTSVDIDQECMSEVQQRQRQQMEEDEVDEAYWSSPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYMEYQLTNENVILTPGPAFRFVKALQHVNSRLRELYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRFCLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMFAGAKDMAYCDTQLRVAFDGDAVLFSDESEHIAKEHGLDKFFQHEALFENKPLAQGPLKGFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGARVLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN", "length": 558, "header": "tr|A0A9J7KBG3-1|A0A9J7KBG3_CRIGR Computationally mapped isoform of Cytosolic 5'-nucleotidase 1B isoform X17 OS=Cricetulus griseus OX=10029 GN=Nt5c1b PE=4 SV=1 CANONICAL=A0A9J7G9S9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 213, "start_aa": "Thr", "end_pos": 213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G996", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G996" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEQVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVSSTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2360, "header": "tr|A0A9J7G9A5-1|A0A9J7G9A5_CRIGR Isoform 1 of Neuroblastoma-amplified sequence isoform X1 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LE17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A8C2LE17-1", "sequence": { "sequence": "MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEQVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2358, "header": "tr|A0A8C2LE17-1|A0A8C2LE17_CRIGR Computationally mapped isoform of Neuroblastoma-amplified sequence isoform X4 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A9J7G9A5-1", "sequence": { "sequence": "MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEQVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVSSTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2360, "header": "tr|A0A9J7G9A5-1|A0A9J7G9A5_CRIGR Isoform 1 of Neuroblastoma-amplified sequence isoform X1 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA09-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A9J7GA09-1", "sequence": { "sequence": "MRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEQVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVSSTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 1901, "header": "tr|A0A9J7GA09-1|A0A9J7GA09_CRIGR Computationally mapped isoform of Neuroblastoma-amplified sequence isoform X6 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A9J7GCB3-1", "sequence": { "sequence": "MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2357, "header": "tr|A0A9J7GCB3-1|A0A9J7GCB3_CRIGR Computationally mapped isoform of Neuroblastoma-amplified sequence isoform X5 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A9J7GDX5-1", "sequence": { "sequence": "MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEQVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVSTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2359, "header": "tr|A0A9J7GDX5-1|A0A9J7GDX5_CRIGR Computationally mapped isoform of Neuroblastoma-amplified sequence isoform X2 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5/entry#A0A9J7JXA9-1", "sequence": { "sequence": "MAASESAPASSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSVIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASGFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSDHYPHGINTAVYHPGHRLLLVGGCESAELGISKASSCGLSAWRVLSGSPYYKQVTNSGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQKGVWSQDEQPGHNELNPDWRLSPEKRKKIKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDEDSDSDHDTSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIENEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLRGTDLEALMAIGKGADDGRFTLPGDVDIDCIAYEELTLPDKETAKSQRQKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACWNGDSLRIIPWAEQKHRAEDWCEELECRMVVEPSLQDDSEFLYAEQPELLQYRMPQLTVEKVMDWYQSRAEEIEHHAGQVDCSLSLIRLGVERCIPGLLALCDDLVTLETLVYEAGCDFTLTLKDLQQKKDFEKLRLLMEHCSEDTYVTSAYQWMVPFLHRCEKRSPGAANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAVALECIYNCERSDQLSLCYDILECLPQRGCGSTTEVTTSLHDMVDQLEKILSVSELLKKHGLEKPVSFVKNTQSSPEEARGLMVRLTRHTGRKQPPVGESHWRMLLQDMLTVQQQVYTCLDSNACYEIFTESLLCSSRLENIHLAGQMMHCSACSASLPAGATQKGRPQYRVGYGRSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSHTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALHVQDYKVASTYCQELMAVGYPKSWAVCSQLGQSEGYRDLATRQELMAFALTHCPPSSIEPLLAASSSLQTEILYQRVNFQIHPEGENISVSPLIGKVLQEDDASASGSGSADLLQWTTATTMKVLSNTTTTTKAMLQAVSDGQWWKKSLAYLRPLQGQEFGGAYRMGAVANDNLEQQGCHPFYESVITNPFVTEVPVESFAEVLLRTGKLAEAKTEVFPTTEVLLQLASDALANDMTLALAYLLALPQVLDANKCFEKQARSALSLQLAAYYYSLQIYARLAPCFRDRCHPLYRVDPKELIKMVTRHVAQHGHDAWPEDLVSLIKQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFIDSGLSTGEIEKRAQMLGLFDTLKTDPESFHKHMVKYIYPTIAGLDHERLLYYFTLLESCGCADFETAPIKPETHIRLLKKFKVVASGLNYKKLTDESRDALGALEPVLTSQNILSISKLAPRIPEKDGRMLSPSSLYTVWLQKLFWIGDPQLIKQVPQSSTEWLHAYDVCLKYFDRLCPDDLITVLDAITFSPKAVSKLSVEAREEMTRKAIKAVKHFIEKPRKRNSEDDPQEGRDSQVTYADALDHLENSLAHLETLGHSFILSLKNSEQEILQKYSYLYDLSRSEKGKLHDQAVTMCLDGQPLGMIQQLLQVAIGPANISPKDVVHSAITKIISALSGSSAELCGTRDPLQVLEGVVGAVHTSVDKGEELVSAEDLLQWLRPFCADDTYPVRPRIQALQIFGQSFHLSEEDSKLLVFFRTQAILRAAWPRRQVDIADIENEENRYSLFTELLESSHHEDEFQHLILLLQAWPPMKSECVSSTASNPWVRLAMVMLTRCTAENKQELGDEVLKICRSLYNTKQMLPMEGVKELCLLMLQQSLLLPSLKLLLESGNETLQAMALEQISAVTKVDESNCDQELLELLVDAKLFVKCISTPFYPRIVGHLVATKQQGGWDAEELARHLQEAGHEAEAGSLLLTVQGTHQAFRTFSTALSAMRQWM", "length": 2359, "header": "tr|A0A9J7JXA9-1|A0A9J7JXA9_CRIGR Computationally mapped isoform of Neuroblastoma-amplified sequence isoform X3 OS=Cricetulus griseus OX=10029 GN=Nbas PE=4 SV=1 CANONICAL=A0A9J7G9A5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756926", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756926", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MF39-1", "protein_name": "NBAS subunit of NRZ tethering complex", "gene_name": "NBAS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASSEPLPTVNPGAAEGEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIRGEYSLFWLPLYPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEISTSFFILVPKDPKPQWRRVAWSYDCTLLAYAESMGTVRVFDLMGSELFVITPASSLAGDLSYAIAGLIFLEYKASAQWSAELLVINYRGELRSYLVSVGTHQSYQESHCFSFSSHYPHGINTAIYHPGHRLLLVGGCETAEVGISKAASCGLSAWRVLSGSPYYKPVTHGGDRVTAVPKTLGLLRMLSGKFYSRQGQEQDGIFKMSLSPGGTLLAAIHFSGKLSIWAIPSLKQQGEWTQHEQPGYDDLNPDWRLSTEKRKKIKDKESFYPLIDVNWWVDSAVILARCSGALTVSSVKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRLETRAGEDDEEEDSDSDQEISAKTRYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIESEEYEEALSLAQTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLKGTDLEALLAIGKGADDGRFTLPGEMDIDNISYEELSPPEEEPAEKKKEKELKKRRELLKLVNFSKLTLEQKELCRCRLKLLTYLDRLATYEHDSAREHPRDPVPQPLWPRTPTPPGPVRCLREPGLCATVEQVLHWPRIQHFTRETDCTNSSVCQHRPWARGQAGMVGAHLPRLQQKIIPDQDQLMALALCYDILECLPQRGYGQKTEVTTALHDMVDQLEHILSVSEILEKHGLEKPISYVKNTQSSSEEARKLMVRLTRHTGRKQPPVSESHWRVLLQDMLTMQQNVYTCLDSDACYEIFTESLLCSSRLENIHLAGQMMHCSACSISPPNSIAHKGKTQFRVSYEKSIDLVLAASREYFNSSTNLTDTCMDLARCCLQLITDRPAAIQEELDLIQALGCLEEFGVKILPLQVRLCSDRIGLVKECICQSPMCYKQSTKLLDLAELLRVAGEDPEERRGQVLILLVEQALRFHDYKAANVHCQELMATGYSKSWDVCSQLAQSEGYQDLATRQELMAFALTHCPPSSIELLLAASSSLKTEILYQRVNFQIHPEGGESINMSPLMSKALQEDEVSVPGSNSADLLHWTTATTMKVLSNTTTTTKAVLQAVSDGQWWKKSLTYLRPLQGQEFGGVYQIGTRANEGLEKQGCHPFYESVISNPFVVESEVTYDTYQHIPVESFAEVLLRTGKLAETKTEGEEVFPTTEVLLQLASDALPNDMTLALAYLLALPQVLDANKCFEKQSHSALSLQLAAYYYSLQIYAQLAPCFRDKCHPLYRADPKELIKMVSRHVTLYGHEAWPEELAALTKQLHYYNERLLDFTQAQILQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSVSRWEVFMTHLEFLFTDSGLSTGEIENRAQSLHLFETLKTDPEGFHKHMVKYIYPTIGGFDHERLLYYFTLLESCGSADFGKYAIKPETHVRLLKKFKVVASGLDYKKLTDENMNPLEALEPILSSQNILSISKLVPKIPGKDGRMLSPSSLYTIWLQKLFWTGDPHLVKQVPASPQEWLHAYDVCMKYFDRLLPGDLITVVDAVTFSPKAVTKLSLEARKEMTGKAIKAVRHFIEKPRKRNLEEDTEEAGGSQVTYADALNHLEQSLAHLETLNHSFIISLKNSEQEMLQKYGYLYDLSRSEKEKVYNQAVAMCLDGQPLRMIQQLLEVAVGPLDISPKDIVQSAVTEIVSALSGGSADLGGPADPLHILEGVVAAVHASVDEGEELVSSEDLLEWLRPFCANDAWPVRPRIHVLQILGQSFHLTEEDGKLLVFFRTEAILKATWPQRQVDVSDVADEEKRCELFTELLEASHREVEFQHLVLLLQAWPPMKREYTVTNNPWVRLATVMLTRCTTENKEGLGNEVLKLCRSLYNTEQMLPAEGVKELCSLLLGQALLLPSLKLLLESPDERLHTMALDHITAIAKVNDSNCDQELLSLLLDAKLLVKCLSTPFYPRLIKHLLASPQHGRWDPEELARQLWEAGHEAEAGSLLLAARGTHRALRTFSTALGAAQHWV", "length": 2149 }, "evidence": [ { "id": "A0A9J7G9A5", "url": "https://omabrowser.org/oma/group/A0A9J7G9A5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A2RRP1-1", "protein_name": "NBAS subunit of NRZ tethering complex", "gene_name": "NBAS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPESGPALSPGTAEGEEETILYDLLVNTEWPPETEVQPRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASSFIGDLSYAIAGLIFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHCFSFSSHYPHGINTAIYHPGHRLLLVGGCETAEVGMSKASSCGLSAWRVLSGSPYYKQVTNGGDGVTAVPKTLGLLRMLSVKFYSRQGQEQDGIFKMSLSPDGMLLAAIHFSGKLSIWAIPSLKQQGEWGQNEQPGYDDLNPDWRLSTEKRKKIKDKESFYPLIDVNWWADSAVTLARCSGALTVSSVKTLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRLETRAGEEDEGEEDSDSDYEISAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIESEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNVASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLKGTDLEALLAIGKGADDGRFTLPGEIDIDSISYEELSPPDEEPAKNKKEKELKKRQELLKLVNFSKLTLEQKELCRCRRKLLTYLDRLATYEEILGVPHASEQRYDAEFFKKFRNQNIVLSARTYAQESNVQALEILFTYHGSDLLPHRLAILSNFPETTSPHEYSVLLPEACFNGDSLMIIPWHEHKHRAKDWCEELACRMVVEPNLQDESEFLYAAQPELLRFRMTQLTVEKVMDWYQTRAEEIEHYARQVDCALSLIRLGMERNIPGLLVLCDNLVTLETLVYEARCDVTLTLKELQQMKDIEKLRLLMNSCSEDKYVTSAYQWMVPFLHRCEKQSPGVANELLKEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAIALECIYTCERNDQLCLCYDLLECLPERGYGDKTEATTKLHDMVDQLEQILSVSELLEKHGLEKPISFVKNTQSSSEEARKLMVRLTRHTGRKQPPVSESHWRTLLQDMLTMQQNVYTCLDSDACYEIFTESLLCSSRLENIHLAGQMMHCSACSENPPAGIAHKGKPHYRVSYEKSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPPAIQEELDLIQAVGCLEEFGVKILPLQVRLCPDRISLIKECISQSPTCYKQSTKLLGLAELLRVAGENPEERRGQVLILLVEQALRFHDYKAASMHCQELMATGYPKSWDVCSQLGQSEGYQDLATRQELMAFALTHCPPSSIELLLAASSSLQTEILYQRVNFQIHHEGGENISASPLTSKAVQEDEVGVPGSNSADLLRWTTATTMKVLSNTTTTTKAVLQAVSDGQWWKKSLTYLRPLQGQKCGGAYQIGTTANEDLEKQGCHPFYESVISNPFVAESEGTYDTYQHVPVESFAEVLLRTGKLAEAKNKGEVFPTTEVLLQLASEALPNDMTLALAYLLALPQVLDANRCFEKQSPSALSLQLAAYYYSLQIYARLAPCFRDKCHPLYRADPKELIKMVTRHVTRHEHEAWPEDLISLTKQLHCYNERLLDFTQAQILQGLRKGVDVQRFTADDQYKRETILGLAETLEESVYSIAISLAQRYSVSRWEVFMTHLEFLFTDSGLSTLEIENRAQDLHLFETLKTDPEAFHQHMVKYIYPTIGGFDHERLQYYFTLLENCGCADLGNCAIKPETHIRLLKKFKVVASGLNYKKLTDENMSPLEALEPVLSSQNILSISKLVPKIPEKDGQMLSPSSLYTIWLQKLFWTGDPHLIKQVPGSSPEWLHAYDVCMKYFDRLHPGDLITVVDAVTFSPKAVTKLSVEARKEMTRKAIKTVKHFIEKPRKRNSEDEAQEAKDSKVTYADTLNHLEKSLAHLETLSHSFILSLKNSEQETLQKYSHLYDLSRSEKEKLHDEAVAICLDGQPLAMIQQLLEVAVGPLDISPKDIVQSAIMKIISALSGGSADLGGPRDPLKVLEGVVAAVHASVDKGEELVSPEDLLEWLRPFCADDAWPVRPRIHVLQILGQSFHLTEEDSKLLVFFRTEAILKASWPQRQVDIADIENEENRYCLFMELLESSHHEAEFQHLVLLLQAWPPMKSEYVITNNPWVRLATVMLTRCTMENKEGLGNEVLKMCRSLYNTKQMLPAEGVKELCLLLLNQSLLLPSLKLLLESRDEHLHEMALEQITAVTTVNDSNCDQELLSLLLDAKLLVKCVSTPFYPRIVDHLLASLQQGRWDAEELGRHLREAGHEAEAGSLLLAVRGTHQAFRTFSTALRAAQHWV", "length": 2371 }, "evidence": [ { "id": "A0A9J7G9A5", "url": "https://omabrowser.org/oma/group/A0A9J7G9A5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E9Q411-1", "protein_name": "Neuroblastoma amplified sequence", "gene_name": "Nbas", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPESAPALSPGSADEEETILYDLLVNTEWPPETEVQLRGNRKHGASFIITKAIRDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVIAPASVFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFSGHYPHGINTAIYHPGHRLLLVGGCETAELGISKAASCGLSAWRVLSGSPYYKQVTNGGDRVTEVPKTLGLLKLLSVKLSPRLGQEQDGIFKMGLSPDGSLLAAIHFSGKLSIWAIPSLKQQGVWRQDEQPGYNELNPDWRLSPEKRKKVKDKESFYPLIDVNWWADGAVTLARCSGALTVSSAKSLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGEVDSDSDPETSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIDSEDYEEALCLAHTYGLDTDLVYQRQWRKSAVNSASIHNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLKGTDLEALVAIGKGVDDGRFTLPGDIDIDSIAYEELSPADKEPSKSKRQEELKKRRDLLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSHLLPHRLAILSNFPETTSPHEYAVLLPEACWNNDSLTIIPWAEHKHRAEDWCEELECRMVVEPSLQDDSEFLYAAQPELLQYRTPQLTVEKVMAWYQSRAEDIEHHAGQVDCALSLVRLGVERHIPGLLTLCDDLVTLETLVYEAGCDFTLTLKDLQQMKDFEKLRLLMEHCSEDNYVTSAYQWMVPFLHRCEKQSPGAANELLREYLVTLAKGDLKLPLKIFQHSKPDLQQKIIPDEDQLMAIALECIYNCERSDQLSLCYDILECLPQRGCGHNTKVTSSLHDMVDQLEKILSVSELLKTHGLEKPVSFVKNTQSSSEEARSLMVRLTRHTGRKQPSVGESHWRMLLQDMLTMQQHVYTCLDSSACYEIFTESLLCSSRLENIHLAGQMMQCSACLDNPPAGALHKGRAQYRVSYERSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKTLPLQVRLCSDRISLIKECVSQSPTCYKQSAKLLGLAELLRVAGEDPEGRRGQVLILLVEQALHVHDYKVASMYCQQLMAAGYPESWAVCSQLGQSEGYQDLATRQELMAFALTHCPPSSIELLLEASSSLQTEILYQRVNFEIHPEGENISASPLPVKVLQEDAAALGSSSADLLHWTTATTMKVLSNTTTTTKAVLQAVSDGQWWKKSLAYLRPYQGQEFGRAYRIGIVANDDLERQGCHPFYESVIANPFVTEVPVESFAEVLLRTGKLTEAQTQVFPTTEVLLQLASDALPNDMTLALAYLLALPQVLDANKCFEKQAHSALSLQLAAYYYSLQIYARLAPCFRDKCHPLYRVDPKELIKMVTGHVAQHGHEGWPEDLLSLSRQLHYYSERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAESLEENVYSIALSLAQRYSISQWEVFMTHLEFLFSESGLSTGEIEKRAQTLHLFDTLKTDPESFHKHMVKYIYPTIEGLDHERLLYYFTLLESCGCANFETTAIKPEIHIRLLKKFKVVASGLNYKKLTDKSEDALEALEPVLTSQNILSISKLAPRIPGKHGQMLSPSSLYTVWLQKLFWAGDPHLIKQAPESSAEWLHACDVCLKYFDRLCPDDLITVMDAITFSPKAVSKLSVEAREEMTRKAIKTIKHFIEKPRKRNSEEDPQEGRGSQATYPDALAHLETSLAHLETLSHSFILSLRNSEQEILQKYSYFYDLSRSEKEKIHDQAVAMCLDGQPLRMIQQLLEVAIGPVNISPKDIVHTAITQIISALSGGSADLCGSRDPLQVLEGVVGAVRTSVDNGEELVSAEDVLQWLRPFCAEDTYPVRPRIQVLQLLGQSFHLSEEDGKLLVFFRTEAILRAAWPQRQVDIADIENEENRHTLFSELLESSHREVEFQHLILLLQAWPPMKSECVLANNPWVRLVTAMLTRCTEENKQSLGDEVLKICRSLYNTTQMLPVEGVKELCLLLLHQSLLLPSLKLLLESGEESLQAMALEQISAVTKVNDSNCDQELLSLLVDARLLVKCVSTPFYPHIVGHLVANNQQGRWNIEELARHLQEAGHEVEAGSLLLAVQGTHRVFRTFSIALSAVRQWV", "length": 2356 }, "evidence": [ { "id": "A0A9J7G9A5", "url": "https://omabrowser.org/oma/group/A0A9J7G9A5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1M0U5-1", "protein_name": "NBAS subunit of NRZ tethering complex", "gene_name": "Nbas", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRVSRAVTSVRVQQSLIRARCRSAPPSTTLFQANMAAPESAPALSPGSADEEETILYDLLVNTEWPPETEVQPRGNRKHGASFIITKAIKDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVIAPASVFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHSFSFADHYPHGVNTAIYHPGHRLLLVGGCETAELGISKASSCGLSAWRVLSGSPYYKQVTNGGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAAIHFSGKLSIWAIPSLKQQGVWRQDEQPGYDELNPDWTLSPEKRKKVKDKESFYPLIDVNWWADGAVTLARCSGALTVSSSKSLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIKLAPKRSRVEMRAGEEDEGDVDSDWDHETSAKARYFGYIKQGLYLVTEMERFAPPRKRPRTITKNYRLVSLRSTTPEELYQRKIESEEYEEALSLAHTYGLDTDLVYQRQWRKSAVNIASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLKGTDLEALVAIGKGVDDGRFTLPGDVDLDGITYEELSPPHKEPAQSKRQKELKKRHELLKLVNFSKLTLEQKELCRCRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQALEILLTYHGSDLLPHRLAILSNFPETTSPHEYAVLLPEACWNNDSLMIIPWAEQKHRAEDWCEELECRMVVEPGLQDDSEFLYAAQPELLQYRTPQLTVEKAMAWYRSRAQDIEHHAGQVDCALSLVRLGMERHIPGLLTLCDDLVTLETLVYEAGCDFTLTLKDLQQMKDFEKLRLLMERCSEDNYVTSAYQWMVPFLHRCEKQSAGAANELLREYLVTLAKGDLKLPLKIFQHSKPDLQQKIIPDEDQLMAIALECIYNCERSDQLSLCYDILECLPQRGCGLNTKVTSSLHDMVDQLEKILSVSELLKNHGLEKPVSFVKNTQSSSEEARSLMVRLTRRTGRKQPSVGESHWRMLLQDMLTMQQHVYTCLDSSACYEIFTESLLCSSRLENIHLAGQMMQCSACSDNLPAGVVHKGKPQYRVSYERSIDLVLAASREYFNSSTSLTDSCMDLARCCLQLITDRPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSPTCYKQSAKLLGLAELLRVAGEDPEERHGQVLILLVEQALNVHDYKAASTYCQELMAAGYPDSWDVCSQLGQAEGFRDLATRQELMAFALTHCPPSSIELLLAASSSLQTEILYQRVNFEIHPEGENINVVSPLTGKVLQEDDTSLGSSSADLLQWTTATTMRVLSNTTTTTRAVLQAVSDGQWWKKSLAYLRPLQGQDFGGAYRIGTVANDDLERQGCHPFYESVIANPFVTEQVPVESLAEVLLRTGKLAEAKAQVFPTTEVLLQLASDALPNDMTLALAYLLALPQVLDANKCFEKQAHSALSLQLAAYYYSLQIYARLAPCFRDKCHPLYRVDPKELIKMVTRHVAQHGHEAWPEDLLSLTRQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEENVYSIALSLAQRYSISQWEVFMTHLEFLFSDSGLSTGEIEKRAQALHLFDTLKTDPESFHKHMVKYIYPTIEGLDHERLLYYFTLLESCGCADFETAAIKPEIHIRLLKKFKVVASGLNYKKLTDKSEDALEALEPVLTSQNILSISKLAPRIPEKEGQMLSPSSLYTVWLQKLFWTGDPHLIKQAPESSAEWLHAYDVCLKYFDRLGPHDLITVVDAITFSPKAVSKLSVEAREEMTRKAIKTVKHFIEKPRKRNSEEDPQEGSGSQATYADALAHLETSLAHLETLSHSFILSLKNSEQEVLQKYSYLYDLSRAEKGKLNDQAVAMCLDGQPLRMIQQLLEVAIGPVNISPKDVVHTAITQIISSLSGTGADLCGSRDPLQVLEGVVGAVRTSVDNGEELVSAEDLLQWLRPFCAEDSCPVRPRIQVLQLLGQSFHLSEEDNKLLVFFRTEAILRAAWPQRQVDVADTESEESRHSLFMELLESSHHEVEFQHLILLLQAWPPMKSECVIANNLWVRLVTVMLTRCTTENKQRLGDEVLKICRSLYNSGQMLPVQGVKELCLLLLHQSLLLPSLKLLLESGDETLQAMALEQISAVTKVNDSNCDQELLSLLVDARLLVKCVSTPFYPHIIAHLVANNQQGRWNAEELARHLQEAGHEAEAGSLLLAVQGTHRVFRTFSTALSALRQWV", "length": 2393 }, "evidence": [ { "id": "A0A9J7G9A5", "url": "https://omabrowser.org/oma/group/A0A9J7G9A5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5TYW4-1", "protein_name": "NBAS subunit of NRZ tethering complex", "gene_name": "nbas", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGDIILEDEEENILYDLLVNTEWPPETDTQLRGLKEHNSSLVAKAVTGPFRFFLHYLCPSSSTLPPGLVRLATKQVNWQLVLASNGKLLAVVQDQCVEIRSARDDFGSIIGKCQVPKDPNPHWRRVAWSHDCALLAYADSTGTVRVFDLMGSELFIIPPAMSFPGDFSYAAAGLMFLEYTGSAQWSAELLVITYSGQLKSYLVSVGTNQGFQENHTFSFSAHYSNGITTAIYHPGHRLLLVGGCESGDSDVSRASQCGITAWRVLSGLPHYKQVTSYEDDISSSQRRGFFKMPSFRLFSRHNGEQDGVFRMSLSPDGTILAVIHFSGSLSLWDIPSFKLRGSWKQEEQPGFDEINPEWKTSLEKRKKIKDKEQYQSLLDVSWWSETALILARCSGALTVSSVRTLKNLLGKSCEWFEPSPRVTSAHDGGFLSLECEVKLAHKRSRLESSVKGEEDDGDDDSDSDEEASAKARYFGYVKQGLYYVTEMERFAPPRKRPRTVIKNYRLVSLRSTTPEELYQRKIDNEEYGEALSLAQAYGLDSDLVYQRQWRKSTVSIASIQDYLSKIKKRSWVLHECVERVPENVDAAKELLQYGLKGTDLEALIAIGAREDQGRFILSGDLDMDDAPYEDFLSMEEELEQRKERESKKRQELLKKVDFSKLTLEQKELCRSRLKLLCYLDRLATYEEILGGPHAAEQRFDGEFFKKFRNQNIVLSARTYARESNVQALDILFTYHGAELLQHRLAILCNFPETTSPHEYSDLLPKAGVDKEGNLVLIPWEESRHRDLDWCEVLECREVVEPKPMDDCQFLYEEQPELERFRSADPFITLLTEWYLTRAQDIESHSRQVDCSLSLVRLGKEQNIPGLERLCDDLVTMETLVYETSCDLSVTLKELQQLRDIDKLRLLMKNSSEDRYVRNCFQWMVPFLHRCEGQRVGSASSLLREYLVTLAKDDLTLPLKLFQHSKPDCHPKIIGDSDQLMTVALKCIYSCERDDQLALCYDVLECLPQRGYGPETDTTKALHDQVDTLEKHLSVAEVLEKHGLQKPISFVRNSQNSKEEAHQLMVRLTRHTGRKNPPVSETVWRSLLQDLLDMQQNVYTCLEPETCHQVFVESLLCSSREENVRLAGQLMHCSGVSEDTPVSVSLRGKAHARVSYSRSVELVLAAAREYFNSSATLSDPCMSLARSCLQLITDCPPLVQEELDLITALSRLEQFGVKILPLQVRLRTDRLSLIKECISQCPTAYRQSLLLLSLARLLRVAGDDEAKRKGQVLTLLAEQALLCQDFKASYIHCQELMAAGYSEGWDVCAQLGQCETFTQLSGRQELMAFSLTHCPPSRIQTLLAASSSLQTQVLYQAVNYKIDPSQARRTGSELFEIKVLDDENVTEIPTKLYSVGAAVPGSINPTDLLHRTTARTIEVLTNTTMSTKAVLTTVIDSHWWRESLSLLRPLHGPAVDRNRAGAANQNADLEKQGCSPFYEELFDDPYVNTSEDVYSSYHYNPQEDFAEVLLRTGKLAETNSEGQNLFPATEVLLQLASDAFPKDMTLALAYLLALPQVLDANTCFEKQPPSALSLHLAAYYYSLQIYSRLAPCFKDKCSPLYRADPRALIRLVTKHVTDHAGCDWPDEDLEALIGQLRLYSERLTDFTQAQVLQGLGRGVDVQRFSSDNQYKKETILGLAETLDENVYSISRSLAHRYSIPLWEVHMTHLEFLFTDSGLSTKDIEGRTEALGLFETLKTDPESFYMHMTKYVYPSIAGTDQLRLLFYFTLLENCGCANYFSQTAMKPDTHLKLLKKLKAVAVGLDYKKMTEENSDPLKALEPILTSQNVLSISKLASRIPQKGGEALTSSAVHSTWLHKLFWEGDQHVLKKAPQTDQDFLHAYDTCAKYFDRLLPVDFVNFLDAITFSPEAANKLSVGTRLEITKRAQKALKSISDKTKKKGNDDRSENSAFNFDTALTHVQQSLTHLETLSHSFLLSLKTSQEELLQKYSRIYDLSRSEQSKVHHLAVTMATDGQPLERIEQLLSVAVGTSDLSPKSVVQDAVERIISALSGDKDVLKDYADPLKVLEGIVAVVHTNVQSGGNIVTSEDMLEWLRPFCGDDTKPVRPRIEVLQILEHSFNLSDQDIHLLVYFRSQAILKACWPNRKCEMEDVENEKKRNSLFLELLESSSKWEEFQHLMLLLQAWPPVTDKSRLETDQNPWVCLTSTLLVHSSSVSQINIGNEVLSMCRSLYLTKHKLNPQGIGNISSLLLNAGLKLPALKLMTESKDEHLLKLTQDQIRNITEVTEEVCDTELLSLLLNAGMLISCVDTAVYPSLVSHMLAQGDWDVEKAAYDLQQAGHSAQAGSLLLSYRGSHPGQFTFNSALAVIRKWL", "length": 2372 }, "evidence": [ { "id": "A0A9J7G9A5", "url": "https://omabrowser.org/oma/group/A0A9J7G9A5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Dsl1/NZR complex", "id": "GO:0070939", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070939", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" }, { "name": "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum", "id": "GO:0006890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006890", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA catabolic process", "id": "GO:0000956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000956", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" }, { "name": "negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:2000623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000623", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SNARE binding", "id": "GO:0000149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000149", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1182, "end_pos": 1184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1186, "end_pos": 1188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1378, "end_pos": 1380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1418, "end_pos": 1420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2017, "end_pos": 2019, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2253, "end_pos": 2255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" }, { "id": "PF22913", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NBAS subunit of NRZ tethering complex C-terminal", "eco_id": "ECO_0000259", "start_pos": 1983, "end_pos": 2107, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G9A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" }, { "id": "PF15492", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15492" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neuroblastoma-amplified sequence N-terminal", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 370, "start_aa": "Trp", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G9A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9A5" }, { "id": "PF08314", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec39", "eco_id": "ECO_0000259", "start_pos": 1025, "end_pos": 1364, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1182, "end_pos": 1184 }, { "start_pos": 1186, "end_pos": 1188 }, { "start_pos": 1378, "end_pos": 1380 }, { "start_pos": 1418, "end_pos": 1420 }, { "start_pos": 2017, "end_pos": 2019 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 2253, "end_pos": 2255 }, { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": 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Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757104", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GBK0", "url": "https://www.orthodb.org/?gene=A0A9J7GBK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34098:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34098:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279865", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279865", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9C3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9C3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9C3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9S1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKVNTSYTLIPNQKCKRTNHQSSYFCNTLDLDPQLLSTLGNFKVLPLEIFHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLIQNFHDLDLSGTKEESHLLEHYRALGLLFKRCTLLLPTKDRLKYIHKILSEVSCFKFSSCSAPLQCLGLPCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRIRLFCRNVLLDHWTQRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPQDGQVIWQEMVEGPTDESSLKGLANAIKLLYDTGTKEWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFSAAAERKSFLQSVANAFACVTMEMLQPIMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNASSS", "length": 451, "header": "tr|A0A9J7GBK0-1|A0A9J7GBK0_CRIGR Isoform 1 of F-box only protein 47 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fbxo47 PE=4 SV=1 CANONICAL=A0A9J7GBK0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0/entry#A0A9J7G9C3-1", "sequence": { "sequence": "MASKVNTSYTLIPNQKCKRTNHQSSYFCNTLDLDPQLLSTLGNFKVLPLEIFHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLIQNFHDLDLSGTKEESHLLEHYRALGLLFKRCTLLLPTKDRLKYIHKILSETLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRIRLFCRNVLLDHWTQRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPQDGQVIWQEMVEGPTDESSLKGLANAIKLLYDTGTKEWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFSAAAERKSFLQSVANAFACVTMEMLQPIMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNASSS", "length": 425, "header": "tr|A0A9J7G9C3-1|A0A9J7GBK0_CRIGR Computationally mapped isoform of F-box only protein 47 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fbxo47 PE=4 SV=1 CANONICAL=A0A9J7GBK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0/entry#A0A9J7G9S1-1", "sequence": { "sequence": "MLSMVSKTVSQHIINYISTSSGSRRLLIQNFHDLDLSGTKEESHLLEHYRALGLLFKRCTLLLPTKDRLKYIHKILSEVSCFKFSSCSAPLQCLGLPCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRIRLFCRNVLLDHWTQRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPQDGQVIWQEMVEGPTDESSLKGLANAIKLLYDTGTKEWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFSAAAERKSFLQSVANAFACVTMEMLQPIMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNASSS", "length": 386, "header": "tr|A0A9J7G9S1-1|A0A9J7G9S1_CRIGR Computationally mapped isoform of F-box only protein 47 isoform X7 OS=Cricetulus griseus OX=10029 GN=Fbxo47 PE=4 SV=1 CANONICAL=A0A9J7GBK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0/entry#A0A9J7GBK0-1", "sequence": { "sequence": "MASKVNTSYTLIPNQKCKRTNHQSSYFCNTLDLDPQLLSTLGNFKVLPLEIFHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLIQNFHDLDLSGTKEESHLLEHYRALGLLFKRCTLLLPTKDRLKYIHKILSEVSCFKFSSCSAPLQCLGLPCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRIRLFCRNVLLDHWTQRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPQDGQVIWQEMVEGPTDESSLKGLANAIKLLYDTGTKEWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFSAAAERKSFLQSVANAFACVTMEMLQPIMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNASSS", "length": 451, "header": "tr|A0A9J7GBK0-1|A0A9J7GBK0_CRIGR Isoform 1 of F-box only protein 47 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fbxo47 PE=4 SV=1 CANONICAL=A0A9J7GBK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GE84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0/entry#A0A9J7GE84-1", "sequence": { "sequence": "MASKVNTSYTLIPNQKCKRTNHQSSYFCNTLDLDPQLLSTLGNFKVLPLEIFHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLIQNFHDLDLSGTKEESHLLEHYRALGLLFKRCTLLLPTKDRLKYIHKILSEVSCFKFSSCSAPLQCLGLPCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRIRLFCRNVLLDHWTQRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPQDVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFSAAAERKSFLQSVANAFACVTMEMLQPIMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNASSS", "length": 402, "header": "tr|A0A9J7GE84-1|A0A9J7GE84_CRIGR Computationally mapped isoform of F-box only protein 47 isoform X6 OS=Cricetulus griseus OX=10029 GN=Fbxo47 PE=4 SV=1 CANONICAL=A0A9J7GBK0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 277, "start_aa": "Thr", "end_pos": 277, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr277", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9C3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9C3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9C3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9C3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757104", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GBK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBK0" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 91, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 277 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 }, { "start_pos": 447, "end_pos": 449 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G9D3-1", "uniprot_ac": "A0A9J7G9D3", "uniprot_id": "A0A9J7G9D3_CRIGR", "mass": { "chemical_mass": 17945.0, "monoisotopic_mass": 17945.0 }, "refseq": { "ac": "XP_003499654", "name": "uncharacterized protein C17orf98 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499654" }, "gene_names": [ { "name": "CUNH17orf98", "type": "recommended", "evidence": [ { "id": "A0A9J7G9D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3" } ] }, { "name": "CUNH17orf98", "type": "synonym", "evidence": [ { "id": "XP_003499654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499654" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C17orf98 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7G9D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C17orf98 homolog", "type": "synonym", "evidence": [ { "id": "XP_003499654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499654" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613745.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499654" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH17orf98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3", "locus": {} } ], "crossref": [ { "id": "A0A9J7G9D3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G9D3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765515", "url": "https://www.ncbi.nlm.nih.gov/gene/100765515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765515", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765515", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G9D3", "url": "https://www.orthodb.org/?gene=A0A9J7G9D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34221", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34221", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34221:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34221:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499654", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGMSQFCGCPLRLEKSFILDGVAVSTMARAYSISRPKVWSAIPPYNPQQDCHARRYFRSYVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQRYLNRRNWAGAGHSIQQVGGHDYYNSNPKAITTGLNGRFGYRRNTPALRQRTSVFGEVTPFPIF", "length": 158, "header": "tr|A0A9J7G9D3-1|A0A9J7G9D3_CRIGR Isoform 1 of Uncharacterized protein C17orf98 homolog OS=Cricetulus griseus OX=10029 GN=CUNH17orf98 PE=4 SV=1 CANONICAL=A0A9J7G9D3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D3/entry#A0A9J7G9D3-1", "sequence": { "sequence": "MVGMSQFCGCPLRLEKSFILDGVAVSTMARAYSISRPKVWSAIPPYNPQQDCHARRYFRSYVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQRYLNRRNWAGAGHSIQQVGGHDYYNSNPKAITTGLNGRFGYRRNTPALRQRTSVFGEVTPFPIF", "length": 158, "header": "tr|A0A9J7G9D3-1|A0A9J7G9D3_CRIGR Isoform 1 of Uncharacterized protein C17orf98 homolog OS=Cricetulus griseus OX=10029 GN=CUNH17orf98 PE=4 SV=1 CANONICAL=A0A9J7G9D3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ] }, { "name": "Fubp3", "type": "synonym", "evidence": [ { "id": "XP_027279675", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279675" } ] } ], "protein_names": [ { "name": "Far upstream element-binding protein 3 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7G9H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8/entry#names_and_taxonomy" } ] }, { "name": "far upstream element-binding protein 3 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027279675", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279675" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279675" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fubp3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8", "locus": {} } ], "crossref": [ { "id": "A0A9J7G9H8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G9H8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22480", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22480", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22483", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22483", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22486", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22486", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22489", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22489", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761512", "url": "https://www.ncbi.nlm.nih.gov/gene/100761512", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761512", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761512", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G9H8", "url": "https://www.orthodb.org/?gene=A0A9J7G9H8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279675", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LXA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGLGGLAVARGRGRGRGDWSVGTPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGAGLGAPAAFGQSPFSQPPAAPHQNAFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQVPSQQSQPQSSQPDYSKVWEDYYKKQSHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHSQVCSQSPAP", "length": 574, "header": "tr|A0A9J7G9H8-1|A0A9J7G9H8_CRIGR Isoform 1 of Far upstream element-binding protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fubp3 PE=4 SV=1 CANONICAL=A0A9J7G9H8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LXA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8/entry#A0A8C2LXA1-1", "sequence": { "sequence": "MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGLGGLAVARGRGRGRGDWSVGTPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGAGLGAPAAFGQSPFSQPPAAPHQNAFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQVPSQQSQPQSSQPDYSKVWEDYYKKQSHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHSQEQ", "length": 568, "header": "tr|A0A8C2LXA1-1|A0A8C2LXA1_CRIGR Computationally mapped isoform of Far upstream element-binding protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fubp3 PE=4 SV=1 CANONICAL=A0A9J7G9H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8/entry#A0A9J7G9H8-1", "sequence": { "sequence": "MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGLGGLAVARGRGRGRGDWSVGTPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGAGLGAPAAFGQSPFSQPPAAPHQNAFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQVPSQQSQPQSSQPDYSKVWEDYYKKQSHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHSQVCSQSPAP", "length": 574, "header": "tr|A0A9J7G9H8-1|A0A9J7G9H8_CRIGR Isoform 1 of Far upstream element-binding protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fubp3 PE=4 SV=1 CANONICAL=A0A9J7G9H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8/entry#A0A9J7JMV2-1", "sequence": { "sequence": "MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGLGGLAVARGRGRGRGDWSVGTPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGAGLGAPAAFGQSPFSQPPAAPHQNAFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQVPSQQSQPQSSQPDYSKVWEDYYKKQSHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHSQVCSQSPAP", "length": 573, "header": "tr|A0A9J7JMV2-1|A0A9J7JMV2_CRIGR Computationally mapped isoform of Far upstream element-binding protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fubp3 PE=4 SV=1 CANONICAL=A0A9J7G9H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8/entry#A0A9J7JV77-1", "sequence": { "sequence": "MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGLGGLAVARGRGRGRGDWSVGTPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGAGLGAPAAFGQSPFSQPPAAPHQNAFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQVPSHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHSQVCSQSPAP", "length": 550, "header": "tr|A0A9J7JV77-1|A0A9J7JV77_CRIGR Computationally mapped isoform of Far upstream element-binding protein 3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Fubp3 PE=4 SV=1 CANONICAL=A0A9J7G9H8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761512", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761512", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9H8" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 146, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G9I1-1", "uniprot_ac": "A0A9J7G9I1", "uniprot_id": "A0A9J7G9I1_CRIGR", "mass": { "chemical_mass": 238666.0, "monoisotopic_mass": 238666.0 }, "refseq": { "ac": "XP_027254472", "name": "tudor domain-containing protein 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254472" }, "gene_names": [ { "name": "Tdrd15", "type": "recommended", "evidence": [ { "id": "A0A9J7G9I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1" } ] }, { "name": "Tdrd15", "type": "synonym", "evidence": [ { "id": "XP_027254472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254472" } ] } ], "protein_names": [ { "name": "Tudor domain-containing protein 15", "type": "synonym", "evidence": [ { "id": "A0A9J7G9I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1/entry#names_and_taxonomy" } ] }, { "name": "tudor domain-containing protein 15", "type": "synonym", "evidence": [ { "id": "XP_027254472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254472" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613660.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254472.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254472" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tdrd15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1", "locus": {} } ], "crossref": [ { "id": "cd20436", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20436", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20437", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20437", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103160287", "url": "https://www.ncbi.nlm.nih.gov/gene/103160287", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160287", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160287", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G9I1", "url": "https://www.orthodb.org/?gene=A0A9J7G9I1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22948:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22948:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSTSLLPTFLDVDLTVLHIECLSKDVLVKFQGKNNSECQFDYHILQREIQYIPKVKNTVGVNEFCLVEEKVTGEWQRGRVVGKTNELYTVLLIDRGEELRVDGTRVASACEKLFELPPRVIFGIFANILPVGEKWSPKALHYFKSLVGIRLKVNMQTVLPLQMILLEAPKVISEVLELQLGRFIDRDTFRLIVEILKELPQPMPDLLHHKRLDSSLSSKSTSLDVQYILDNFQPSLSVGSLDSVKVSSALSPGKFYCQLLTRIPELEDLTECMNLHYNTVGQETSPTCDNFGLLCVAKGTNGRWQRGILQKLLPDNQVKIWFMDYGSSESIPSIHVKKLKQDFIFAPLFSFPCSLTYLHCPDPEVRRQQLTIFKQALLGHVVYAHIDWFSEDERLYYVTLQSQESAVNSMCLLRTLGTQILCPAFESNITNSLSETGTSDTGSLASEGFIGYTEQSVGGLNEKDDLKAGFPIKTVKMEIESTHIAFVVNVLNPSNFWVRISKHQNKFEDIMKTINKFYNASENDELTLRNPEPGLFCCARYSKDRCFYRAIITAMNDYWINVYLLDYGSTDSIPFFDAKILLPEFCDLPPLAMHCSLAHISPVTDLWVQAATDYFKKIVLNKAILLQVRAKKDDKYIVSIQNIETPENMDVASLMLQAGYAESTEVALEDFPKSVGDCSMLKLKYEDTLHNKNVLASAPVKRPKPEKSHSDKLKENLSSLHRVLDLKISFNFCFEQSSSQPYKEYVFKPGKLLEVNCSYCHGPGDFSCQLLCKSGDLKLLMEQIQDYYSIHPEPYQTGKVACVAKHSRDGKWYRAAILTQASDQEVELVFVDYGNQERVFIKDLCAINPHFLALEAQAFRCCLNYLVEPITCKILDWTEEASRDFGYFISSRGGLLTCIVYALVLIHPKCLCNLVDLQSSLTSANEFLLRRGSTHYSVLSRPLPFSVSLYSYYYSSFDIKIGSEEDVYISHVYSPKKFYCQLCRNSKDLEMLETRITEMISLKMCAKYDWNRMRLCISKYIEDGLSYRALVKPTESSSDPCVYFVDYGNEQFVEENMVCAISDQFPELLFTPMQAIQCFLSDLRDIDIPGEINRWFEDSFLGKPLKAVILSRESDGQLGIDLYDGYQHINQTIKLLLSIYGEKHSEQAWCVEKNPKLNQALTAPSKENPESNRCCKAINKTSLPKHSAKKTDQLMRPESMYARSLKPSICYGVEPTPKSKVKRPFKYGLKHKNGKLILGSGHIPEESGMGSKSQETASKLVTKDLNQASSQTRCILHRPPVTKVPQAHIDLSSQVKGSAPISHHLANFPLAGNGNEAIGLTDVLNERTNGQKKQNSLSLLVRDHVEYSNNHAVSTDSTKEVLPKGPFEVEVFDHGNTAIVNGSKVYSISRELLTMPQLGIYSFLHRIKWNGPIEMCKSKIAEYFSLGVINRIISCEFLKMHNGKWEVNITCGNKCVIKKLLSWSPCPKLQEGTLQTPRVIALKVSLCENSHWKAGRVNSYEGLVIFKPLSQQLVEIPSELVRHGQFEKSKMIYISETGGFHVKLPKNQKTSDLARLIPKEDYSSFLSMDIIKRGLEFLSVSRRNFKRYQSQTEEQWVDEKVLGFLVNHGQHEAVPVDNTKVFSRQIRNISRQGMAQKRIWFRHSKKTTLEFIVCVFPHLQMSIISLKYLDYAWEVEMLANGVLLWRYLNVSTSLVEENKWPSSGTVLSLEPQILLSPCVTRPFVWAPLQNGRRYCGIATAVSDPSDFCVQLEDFFDIMKYLFTLLSDIPEPLQVLPPERMIPGSSCLFKNELEGQWNRAEISEVSDQSLHLVLIDYGLSVHIPHSEATNLKSVPEKIMSLPRLSYPCSLYGVLPASGKLWNNEARQFFQDFLCKSGLVFQFREYGSAAVSEVDVIYKNDSVADMLVVSGLAVHPKDSAGPHGITATGSKLQSQPICPLLDKHWHKKESFNYSTVKQKLQKKKPSKKRNVSRRLLKKSCVSEKLHSGNLKQRRKVIIGKLNFPSTILFEICIAALSGGLPDRLGNNTGCFKNILSTVGVQEKSHTMDSNAVSVNEKITAEHLKNPAVALSLGDAAVIVLQDQSLHPSQQVIDDADARMDQPKAQDMGLGDS", "length": 2111, "header": "tr|A0A9J7G9I1-1|A0A9J7G9I1_CRIGR Isoform 1 of Tudor domain-containing protein 15 OS=Cricetulus griseus OX=10029 GN=Tdrd15 PE=4 SV=1 CANONICAL=A0A9J7G9I1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1/entry#A0A9J7G9I1-1", "sequence": { "sequence": 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"length": 2111, "header": "tr|A0A9J7G9I1-1|A0A9J7G9I1_CRIGR Isoform 1 of Tudor domain-containing protein 15 OS=Cricetulus griseus OX=10029 GN=Tdrd15 PE=4 SV=1 CANONICAL=A0A9J7G9I1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1217, "start_aa": "Thr", "end_pos": 1217, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1217", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9I1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160287", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160287", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1131, "end_pos": 1133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1180, "end_pos": 1182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1382, "end_pos": 1384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1449, "end_pos": 1451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1629, "end_pos": 1631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1690, "end_pos": 1692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1899, "end_pos": 1901, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1951, "end_pos": 1953, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1969, "end_pos": 1971, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2025, "end_pos": 2027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 757, "end_pos": 759, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9I1", "database": "UniProtKB", 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Classification" ] }, { "id": "PTHR21178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21178:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21178:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496525", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496525", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVLTSPRGKAEVVHCRRTESQDIFCIKNLIRKFTQKLFGRLNIIYLLEKANLAVTLCNDKEEIMAHAIFLDYPNWNVANQDNWVSLFRELDSEIPCTPLNTLFMHFFVAVDEYATGCLREVIRTVFKTVPELHFIFLIVPTYVSLGSPLTTVFSQVGNIPCLTYDEDFAVYICHRHDHYPQLHIRKARVEDHDDLMPIFLHNDTTLKEMYGEYFLAELIEAQDEENHAVVCEVEGKAVGFMSVCSHVNLALLHECFDLGPFHGFCFPHPDDILEPSKEPSIQESQDTEIKSDSQSSQKETEESEENASLELPEAAEIQEKESEESLLSGDIPPGFSDVIKDIEQKFSVLSNMGDEEPSLSSSESSLPSFLFSEEPSLFRPIYLGESAAFCIQLFCIDEKYEARSLDFMSFVFSLFPDKNYCLISVPHLTPEFVLIQNFVKVVPCNNCTLEHDLYVFHRAGLLRSIKIRLATILDITGVENLVGTLLLSRKIMDDLIQFNEACRDPDGTALQVFVAEVANQIVGIAVIRQEMDIEYIRSHYNIEDFIYFSHHQQEEHGRLHHFALNPIFRHYTKFFLKEILRLGFKSCLYYPVYPQSREGKLQNSYAHSLTSALHYLVPVRPRRQIVYPLEKLGINAPSKEVSKDQASYALYHTNRKLTLEPKVTVNARIVVVGASSVGISFLETLVFCSHLKFNNLTLISTHGLPGKKLWGSEQRRFLASDHCFNDKDYALMSLCSWVNVVVGRMTGIDRAAKHVVVSYNETVFYDHLILCTGQQYQVPCPTGANMDQHLTNREVLENSKQRYTGKVPYNLFILTDEEDCLRALIWMRNNSILTEGKVIVYGNTIDVYTTVETLLHFGMKGNGIYLVHPPTDSNITCVNNYEIESAIEEAMKTAGVTIYQDSLLAQWNDGEDPDPIHSASFTTSTKPFRLECSVFFSFYKKNVDYETFKAFNDACLVYDGRLVIDTTFHTNDIAIRAAGSLTKFSNRYYSNDWTHSNFSSKEIGFQLAAAMLSLFDPTLEPVTEPPADLDRLIPMYKGAKIQGGILPGSYYYLHIAKPGISSPLDVQRSQPDFGSEVMTGNVRDGTYFRLYINRYKLVESITCLSKEPFPVSNYIRLFGQHEQALNNLCTRYYENLIPDLYSYFTEPWCMALFHDRFIDLRKELRQILNSKQETDMPSMEQLAYKVEDEEINMNEKPQKYLQRVFEQSIYKNLLEKSTLDYLHYNQYHLPMYAWPGII", "length": 1239, "header": "tr|A0A9J7G9U5-1|A0A9J7G9U5_CRIGR Isoform 1 of Cilia- and flagella-associated protein 61 OS=Cricetulus griseus OX=10029 GN=Cfap61 PE=4 SV=1 CANONICAL=A0A9J7G9U5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5/entry#A0A9J7G9U5-1", "sequence": { "sequence": "MSVLTSPRGKAEVVHCRRTESQDIFCIKNLIRKFTQKLFGRLNIIYLLEKANLAVTLCNDKEEIMAHAIFLDYPNWNVANQDNWVSLFRELDSEIPCTPLNTLFMHFFVAVDEYATGCLREVIRTVFKTVPELHFIFLIVPTYVSLGSPLTTVFSQVGNIPCLTYDEDFAVYICHRHDHYPQLHIRKARVEDHDDLMPIFLHNDTTLKEMYGEYFLAELIEAQDEENHAVVCEVEGKAVGFMSVCSHVNLALLHECFDLGPFHGFCFPHPDDILEPSKEPSIQESQDTEIKSDSQSSQKETEESEENASLELPEAAEIQEKESEESLLSGDIPPGFSDVIKDIEQKFSVLSNMGDEEPSLSSSESSLPSFLFSEEPSLFRPIYLGESAAFCIQLFCIDEKYEARSLDFMSFVFSLFPDKNYCLISVPHLTPEFVLIQNFVKVVPCNNCTLEHDLYVFHRAGLLRSIKIRLATILDITGVENLVGTLLLSRKIMDDLIQFNEACRDPDGTALQVFVAEVANQIVGIAVIRQEMDIEYIRSHYNIEDFIYFSHHQQEEHGRLHHFALNPIFRHYTKFFLKEILRLGFKSCLYYPVYPQSREGKLQNSYAHSLTSALHYLVPVRPRRQIVYPLEKLGINAPSKEVSKDQASYALYHTNRKLTLEPKVTVNARIVVVGASSVGISFLETLVFCSHLKFNNLTLISTHGLPGKKLWGSEQRRFLASDHCFNDKDYALMSLCSWVNVVVGRMTGIDRAAKHVVVSYNETVFYDHLILCTGQQYQVPCPTGANMDQHLTNREVLENSKQRYTGKVPYNLFILTDEEDCLRALIWMRNNSILTEGKVIVYGNTIDVYTTVETLLHFGMKGNGIYLVHPPTDSNITCVNNYEIESAIEEAMKTAGVTIYQDSLLAQWNDGEDPDPIHSASFTTSTKPFRLECSVFFSFYKKNVDYETFKAFNDACLVYDGRLVIDTTFHTNDIAIRAAGSLTKFSNRYYSNDWTHSNFSSKEIGFQLAAAMLSLFDPTLEPVTEPPADLDRLIPMYKGAKIQGGILPGSYYYLHIAKPGISSPLDVQRSQPDFGSEVMTGNVRDGTYFRLYINRYKLVESITCLSKEPFPVSNYIRLFGQHEQALNNLCTRYYENLIPDLYSYFTEPWCMALFHDRFIDLRKELRQILNSKQETDMPSMEQLAYKVEDEEINMNEKPQKYLQRVFEQSIYKNLLEKSTLDYLHYNQYHLPMYAWPGII", "length": 1239, "header": "tr|A0A9J7G9U5-1|A0A9J7G9U5_CRIGR Isoform 1 of Cilia- and flagella-associated protein 61 OS=Cricetulus griseus OX=10029 GN=Cfap61 PE=4 SV=1 CANONICAL=A0A9J7G9U5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771165", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771165", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" }, { "start_pos": 875, "end_pos": 877, "annotation": "n_glycosylation_sequon" }, { "start_pos": 998, "end_pos": 1000, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5" }, { "id": "PF23150", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23150" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP61 dimerisation", "eco_id": "ECO_0000259", "start_pos": 1035, "end_pos": 1153, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U5" }, { "id": "PF16092", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16092" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cilia- and flagella-associated protein 61 N-terminal", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 266, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 447, "end_pos": 449 }, { "start_pos": 696, "end_pos": 698 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 830, "end_pos": 832 }, { "start_pos": 875, "end_pos": 877 }, { "start_pos": 998, "end_pos": 1000 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G9U8-1", "uniprot_ac": "A0A9J7G9U8", "uniprot_id": "A0A9J7G9U8_CRIGR", "mass": { "chemical_mass": 65797.0, "monoisotopic_mass": 65797.0 }, "refseq": { "ac": "XP_003502366", "name": "BPI fold-containing family B member 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502366" }, "gene_names": [ { "name": "Bpifb4", "type": "recommended", "evidence": [ { "id": "A0A9J7G9U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" } ] }, { "name": "Bpifb4", "type": "synonym", "evidence": [ { "id": "XP_003502366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502366" } ] } ], "protein_names": [ { "name": "BPI fold-containing family B member 4", "type": "synonym", "evidence": [ { "id": "XP_003502366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502366" }, { "id": "A0A9J7G9U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613890.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003502366.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502366" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bpifb4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8", "locus": {} } ], "crossref": [ { "id": "A0A9J7G9U8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G9U8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754016", "url": "https://www.ncbi.nlm.nih.gov/gene/100754016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QRSNTLH", "url": "https://omabrowser.org/oma/group/QRSNTLH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G9U8", "url": "https://www.orthodb.org/?gene=A0A9J7G9U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46019", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46019:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46019:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502366", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWTAWCVAALSVAAVCGTPQETNTVLRVTKDVLSKAISGTIQQSDAFRSALREVPVGVGGVPYNDFHIREPPPKYTNGRQLGGNYKYGHIEKNENTAQLGGKYRYGEILDSDGSLRDLRHEDYRHADYAYHRNPGRYRSAADTSTVGRRNRRELRPGEIPAGVATGALGPGGLLGSGGILANEGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGLVDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAVLPRPQMPELPPMGDNTNSQLAISANFLGSVLTMLQKQGALDIDITDGMFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPSVTLQKDKALVKVFATSEVVVSQPNDVETTICLIDVDTELLASFSVEGDKLMIDAKLDKTSLNLRTSNVGNFDVFILEMLVEKIFDLAFMPAMNAVLGSGVPLPKILNIDFSNADIDVLEDLLVLST", "length": 617, "header": "tr|A0A9J7G9U8-1|A0A9J7G9U8_CRIGR Isoform 1 of BPI fold-containing family B member 4 OS=Cricetulus griseus OX=10029 GN=Bpifb4 PE=3 SV=1 CANONICAL=A0A9J7G9U8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8/entry#A0A9J7G9U8-1", "sequence": { "sequence": "MWTAWCVAALSVAAVCGTPQETNTVLRVTKDVLSKAISGTIQQSDAFRSALREVPVGVGGVPYNDFHIREPPPKYTNGRQLGGNYKYGHIEKNENTAQLGGKYRYGEILDSDGSLRDLRHEDYRHADYAYHRNPGRYRSAADTSTVGRRNRRELRPGEIPAGVATGALGPGGLLGSGGILANEGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGLVDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAVLPRPQMPELPPMGDNTNSQLAISANFLGSVLTMLQKQGALDIDITDGMFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPSVTLQKDKALVKVFATSEVVVSQPNDVETTICLIDVDTELLASFSVEGDKLMIDAKLDKTSLNLRTSNVGNFDVFILEMLVEKIFDLAFMPAMNAVLGSGVPLPKILNIDFSNADIDVLEDLLVLST", "length": 617, "header": "tr|A0A9J7G9U8-1|A0A9J7G9U8_CRIGR Isoform 1 of BPI fold-containing family B member 4 OS=Cricetulus griseus OX=10029 GN=Bpifb4 PE=3 SV=1 CANONICAL=A0A9J7G9U8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754016", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754016", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YSL4-1", "protein_name": "BPI fold containing family B member 4", "gene_name": "BPIFB4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLTALSIAVLYALLSPALSQLPTDAVLRLNKGVLSDALAGSLQHGAVLQGALGDLPISGMDGSRAQQDSHGGGLLGGGGLLGGLLGGGGLLGGLTGGLLGGGDGANLLGGGGDAGCGLRGDGDASWTAPRSRPPPRSWPVPRGSLPVDVPGAAEGQGALLGDGGPSGTAGLLGGGLLGVLGDGGLLSTAQGLTGLRIVELTLPTVSLRLLPGIGFHLNLYTRVALNGRSLLGLLDIAVEVNITSRVRLTMDGTGYPRLVVEKCNTLLGGMKVRLLRGLLPVVDNLLAGVLNRLLPNLLCPILDVALGLVNDQLGLVNSLVPLGLLGSIQYTVSSLPLVTGQFLEVDLNTVVGRVAGGLVDYPLGRPESVPTPPRVPMPPLPPMPDSSSSQLGLSVSFLSSVLAALQKEGALDLDISNAMYPELPPLTTPTLGALVPAVLKAYPEPCDLLLKIAVPKAPVVTLKKDKAAIQLQATAEVVAIHSADVQKFLCLLNIDASLLAQFAVEANKLKMTAGLEKTELSLVSSSIGDFDISLLEMLINKVFDAAFLPALNAVLGHGVPLPRLLNIDFTNADIYVIEDLLVLSA", "length": 585 }, "evidence": [ { "id": "A0A9J7G9U8", "url": "https://omabrowser.org/oma/group/A0A9J7G9U8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2BGH0-1", "protein_name": "BPI fold-containing family B member 4", "gene_name": "Bpifb4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWTAWCVAALSVAAVCGIRQDTTTVLRVTKDVLGNAISGTIQKSDAFRSALREVPVGVGGVPYNDFHVREPPPKYTNGRQLGGNYKYGHIKANDNRAQLGGKYRYGEILDSDGSLRDLRHEDYRPPDSAYHRGSGRYRSAADSSSVGRLYRRELRPGEIPAGVATGALGPGGLLGTGGMLANEGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGRSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGLVDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAILPRPQMPELPPMGDNTNSQLAISANFLSSVLTMLQKQGAMDIDITDGMFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPTVTLQKDKALVKVFATSEVVVSQPNDVETTICLIDVDTDLLASFSVEGDKLMIDAKLDKTSLNLRTSNVGNFDVFILEMLVEKIFDLAFMPAMNAILGSGVPLPKILNIDFSNADIDVLEDLLVLST", "length": 617 }, "evidence": [ { "id": "A0A9J7G9U8", "url": "https://omabrowser.org/oma/group/A0A9J7G9U8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59827-1", "protein_name": "BPI fold-containing family B member 4", "gene_name": "BPIFB4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWMAWCVAALSVVAVCGTSHETNTVLRVTKDVLSNAISGMLQQSDALHSALREVPLGVGDIPYNDFHVRGPPPVYTNGKKLDGIYQYGHIETNDNTAQLGGKYRYGEILESEGSIRDLRNSGYRSAENAYGGHRGLGRYRAAPVGRLHRRELQPGEIPPGVATGAVGPGGLLGTGGMLAADGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLADVLPDLLCPIVDVVLGLVNDQLGLVDSLIPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGGLIDYPLGWPAVSPKPMPELPPMGDNTKSQLAMSANFLGSVLTLLQKQHALDLDITNGMFEELPPLTTATLGALIPKVFQQYPESCPLIIRIQVLNPPSVMLQKDKALVKVLATAEVMVSQPKDLETTICLIDVDTEFLASFSTEGDKLMIDAKLEKTSLNLRTSNVGNFDIGLMEVLVEKIFDLAFMPAMNAVLGSGVPLPKILNIDFSNADIDVLEDLLVLSA", "length": 614 }, "evidence": [ { "id": "A0A9J7G9U8", "url": "https://omabrowser.org/oma/group/A0A9J7G9U8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q05704-1", "protein_name": "BPI fold-containing family B member 4", "gene_name": "Bpifb4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWTAWCVAALSVAAVCGIRQDTTTVLRVTKDVLGDAISGTIQKSDAFRSALREVPVGVGGVPYNDFHVREPPPKYTNGRQLGGNYKYGHIEANDNTAQLGGKYRYGEILDSDGSLRDLRHEDYRPSDSAYHRGPGRYRSAADPSSAGRLHRRELRPGEIPAGVATGALGPGGLLGTGGILANEGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGLVDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAMLPRPQMPELPPMGDNTNSQLAISANFLSSVLTMLQKQGALDIDITDGMFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPTVTLQKDKALVKVFATSEVVVSQPNDVETTICLIDVDTDLLASFSVEGDKLMIDAKLDKTSLNLRTSNVGNFDVFILEMLVEKIFDLAFMPAMNAILGSGVPLPKILNIDFSNADIDVLEDLLVLST", "length": 617 }, "evidence": [ { "id": "A0A9J7G9U8", "url": "https://omabrowser.org/oma/group/A0A9J7G9U8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" }, { "id": "SM00329", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00329" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipid-binding serum glycoprotein C-terminal", "eco_id": "ECO_0000259", "start_pos": 415, "end_pos": 617, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7G9U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9U8" }, { "id": "SM00328", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipid-binding serum glycoprotein N-terminal", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 391, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 275, "end_pos": 277 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7G9V2-1", "uniprot_ac": "A0A9J7G9V2", "uniprot_id": "A0A9J7G9V2_CRIGR", "mass": { "chemical_mass": 20535.0, "monoisotopic_mass": 20535.0 }, "refseq": { "ac": "XP_027278552", "name": "epididymal-specific lipocalin-10 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278552" }, "gene_names": [ { "name": "Lcn10", "type": "recommended", "evidence": [ { "id": "A0A9J7G9V2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ] }, { "name": "Lcn10", "type": "synonym", "evidence": [ { "id": "XP_027278552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278552" } ] } ], "protein_names": [ { "name": "Epididymal-specific lipocalin-10 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7G9V2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2/entry#names_and_taxonomy" } ] }, { "name": "epididymal-specific lipocalin-10 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027278552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278552" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278552", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278552" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lcn10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2", "locus": {} } ], "crossref": [ { "id": "A0A9J7G9V2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7G9V2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19425", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19425", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762990", "url": "https://www.ncbi.nlm.nih.gov/gene/100762990", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762990", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G9V2", "url": "https://www.orthodb.org/?gene=A0A9J7G9V2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278552", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278552", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLETALATALVLAMTSWTQEFFPKEAHTLNWGKFSGFWYIIAIATDTQGFLPARDKRKLGASVVKVHKTGQLKVVIAFSRPQGCQSMEVTLTKDRKKAVFRNTLKGVKGFHVLSTDYTYGLVYLRLGRAGNNYKSLLLFNRQNISTFLSLREFLDTCNILQLTKQATILPKDDSCAHMILP", "length": 182, "header": "tr|A0A9J7G9V2-1|A0A9J7G9V2_CRIGR Isoform 1 of Epididymal-specific lipocalin-10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lcn10 PE=3 SV=1 CANONICAL=A0A9J7G9V2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G9V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2/entry#A0A9J7G9V2-1", "sequence": { "sequence": "MKLETALATALVLAMTSWTQEFFPKEAHTLNWGKFSGFWYIIAIATDTQGFLPARDKRKLGASVVKVHKTGQLKVVIAFSRPQGCQSMEVTLTKDRKKAVFRNTLKGVKGFHVLSTDYTYGLVYLRLGRAGNNYKSLLLFNRQNISTFLSLREFLDTCNILQLTKQATILPKDDSCAHMILP", "length": 182, "header": "tr|A0A9J7G9V2-1|A0A9J7G9V2_CRIGR Isoform 1 of Epididymal-specific lipocalin-10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lcn10 PE=3 SV=1 CANONICAL=A0A9J7G9V2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G9V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7G9V2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9V2" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 144, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GA11-1", "uniprot_ac": "A0A9J7GA11", "uniprot_id": "A0A9J7GA11_CRIGR", "mass": { "chemical_mass": 182974.0, "monoisotopic_mass": 182974.0 }, "refseq": { "ac": "XP_016835473", "name": "uncharacterized protein C2orf16 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835473" }, "gene_names": [ { "name": "CUNH2orf16", "type": "recommended", "evidence": [ { "id": "A0A9J7GA11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11" } ] }, { "name": "CUNH2orf16", "type": "synonym", "evidence": [ { "id": "XP_016835473", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835473" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C2orf16 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7GA11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C2orf16 homolog", "type": "synonym", "evidence": [ { "id": "XP_016835473", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835473" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 17% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613628.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016835473.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835473" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH2orf16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11", "locus": {} } ], "crossref": [ { "id": "100763270", "url": "https://www.ncbi.nlm.nih.gov/gene/100763270", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100763270", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GA11", "url": "https://www.orthodb.org/?gene=A0A9J7GA11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33888:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33888:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_016835473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835473", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GA11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLRLGSQQQGMNCQQIPLDKKPMVSTPESTRKFLAGPALTSVKFSNLIPESQQCMKSTEFTSEPKWQSVKHVTLSSVSLPQAGNSVWLSPRPFPQNVTSGNQIPQTSNQITESPKVIYRPGHQMVEYTEISRKIRHQVPKLVNHQDMGSSEMTKGLGHKSTETIKKSMRLTPKPTDKVIDSLGVPQQLDLPVPAFVDVTPTPSDQDSNSSELTPPKSYPIPETLELLSCSLPQFKDFKELQTKQVTGSDRMTLEFKNRVAEIMKQICEARQGKEFLRVTSKPVNRETECAEKFPRPCPQDLGPVVVSSEKRSQREQSVVCPPRPSGEEAGRIPKPQYANMENASITPIESLEKIMNFVTISPKSDQVTESAKTHLHGPLSEALPKVSESVTVIPGPPLQVIKSVMIPEPTSLVSKCADSTPKLHDVIFSEFSPRLWLQNVESKKLIAEPTHQILETIDSLGFQVIKTILVPKPLLLIVKSEELAPGPSPQAIETIGVATRSNIKVKDCLSLFPRPHLQDMVKPMELTPRANIQGNSAELILQQTSSLEEPPVLTQKQRLQAEKFLGFKTESPKDMDIEDLTQGRVLQNRDPEMITSEKLQAENYFSRLIHSPSIPFISSSVKTTELASLQGSGMPEVSRALAMKNFGVGILQSPESYTDTIMIRSSALPLVLPHDKTGNTVRTLYPKIWEMDVISKEGVEKKQMGEFGDSLQSYSPYPLRLLPSEFQAGFGARRNPIRSFLGRQQNVWESHVCRQRLPRKYLSNMLMLGNVLGTTMERKLCSPQFLTEGTTMDIGLTIQNLFGVPAELMEFSQSLVERGPRTISQTSVFKNYIQRHILCHGNEKRMPLKMWTRGSTSSIIQQYSGTRLGIKKTNSKLSDIFQEVTQQVSASCPGAQFPALSKSESPLGILYKREDPVSREQSKNSQIGSPTRTFESHHSLKANYLSQAKTGISEQLHLLKDLQLKIAAKLLRSQIPHNVPPPLASGLVLKYPICLQCGRCSGFNCCHKLQSAFGPYLLIYPQIHLLSTPEGHGEIRLHLGFRLRTGKRPQVSKYRGRNRADTWKSTAPPSRRKAKVYTPASKSPTSTRDFQSRSPQSPTSVQVHVRQKQWGSRGVVGKTEAKDSGYYEFCQVHSLSESGFESNQDEKWVTSSLRKTSDLKYPVKKITQGLKTQNRKLFKTSRTLEESPSGTLTDPSRSKSIETSPTSTTSSKRPSKKSSQPKFIQLLFQGLRQAFQTAHRMLAITGRKSEDRTRSDHLWSSKNLHSKQKAKDYCLTEDDKGASTPVVKPRSTGSTPKQEDRLQETHDQCRQAQRPKQASSSHPKPSQLQKTMVSERDAIVQASSITESLRILENVNGKTKNYSAEICGLESNVGTKFLAEESVAPDSLLTSTLQSQFKDTHSKKKEQYGFFRERALPSKPSERTYHSLSEKTHHRSVSERRHCSPSQKKHSSPSDRTLRSLSERSHRSPSQRKDRSPFVRTPQSFSDRSHHNFFKRKGRSPLGRSRSPSGRSRSNLPGRRPARSSRSPRERRVHTPSPKGRLSLSGRSQHRPSSQRGRSPSKRSQLSPIQRTRGSPSERSHGSLSERSPSSPFPSRPDASLVPARRGGGISKEAAAEAAWSRDAFPAAAPSEAARRK", "length": 1638, "header": "tr|A0A9J7GA11-1|A0A9J7GA11_CRIGR Isoform 1 of Uncharacterized protein C2orf16 homolog OS=Cricetulus griseus OX=10029 GN=CUNH2orf16 PE=4 SV=1 CANONICAL=A0A9J7GA11-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GA11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA11/entry#A0A9J7GA11-1", "sequence": { "sequence": "MPLRLGSQQQGMNCQQIPLDKKPMVSTPESTRKFLAGPALTSVKFSNLIPESQQCMKSTEFTSEPKWQSVKHVTLSSVSLPQAGNSVWLSPRPFPQNVTSGNQIPQTSNQITESPKVIYRPGHQMVEYTEISRKIRHQVPKLVNHQDMGSSEMTKGLGHKSTETIKKSMRLTPKPTDKVIDSLGVPQQLDLPVPAFVDVTPTPSDQDSNSSELTPPKSYPIPETLELLSCSLPQFKDFKELQTKQVTGSDRMTLEFKNRVAEIMKQICEARQGKEFLRVTSKPVNRETECAEKFPRPCPQDLGPVVVSSEKRSQREQSVVCPPRPSGEEAGRIPKPQYANMENASITPIESLEKIMNFVTISPKSDQVTESAKTHLHGPLSEALPKVSESVTVIPGPPLQVIKSVMIPEPTSLVSKCADSTPKLHDVIFSEFSPRLWLQNVESKKLIAEPTHQILETIDSLGFQVIKTILVPKPLLLIVKSEELAPGPSPQAIETIGVATRSNIKVKDCLSLFPRPHLQDMVKPMELTPRANIQGNSAELILQQTSSLEEPPVLTQKQRLQAEKFLGFKTESPKDMDIEDLTQGRVLQNRDPEMITSEKLQAENYFSRLIHSPSIPFISSSVKTTELASLQGSGMPEVSRALAMKNFGVGILQSPESYTDTIMIRSSALPLVLPHDKTGNTVRTLYPKIWEMDVISKEGVEKKQMGEFGDSLQSYSPYPLRLLPSEFQAGFGARRNPIRSFLGRQQNVWESHVCRQRLPRKYLSNMLMLGNVLGTTMERKLCSPQFLTEGTTMDIGLTIQNLFGVPAELMEFSQSLVERGPRTISQTSVFKNYIQRHILCHGNEKRMPLKMWTRGSTSSIIQQYSGTRLGIKKTNSKLSDIFQEVTQQVSASCPGAQFPALSKSESPLGILYKREDPVSREQSKNSQIGSPTRTFESHHSLKANYLSQAKTGISEQLHLLKDLQLKIAAKLLRSQIPHNVPPPLASGLVLKYPICLQCGRCSGFNCCHKLQSAFGPYLLIYPQIHLLSTPEGHGEIRLHLGFRLRTGKRPQVSKYRGRNRADTWKSTAPPSRRKAKVYTPASKSPTSTRDFQSRSPQSPTSVQVHVRQKQWGSRGVVGKTEAKDSGYYEFCQVHSLSESGFESNQDEKWVTSSLRKTSDLKYPVKKITQGLKTQNRKLFKTSRTLEESPSGTLTDPSRSKSIETSPTSTTSSKRPSKKSSQPKFIQLLFQGLRQAFQTAHRMLAITGRKSEDRTRSDHLWSSKNLHSKQKAKDYCLTEDDKGASTPVVKPRSTGSTPKQEDRLQETHDQCRQAQRPKQASSSHPKPSQLQKTMVSERDAIVQASSITESLRILENVNGKTKNYSAEICGLESNVGTKFLAEESVAPDSLLTSTLQSQFKDTHSKKKEQYGFFRERALPSKPSERTYHSLSEKTHHRSVSERRHCSPSQKKHSSPSDRTLRSLSERSHRSPSQRKDRSPFVRTPQSFSDRSHHNFFKRKGRSPLGRSRSPSGRSRSNLPGRRPARSSRSPRERRVHTPSPKGRLSLSGRSQHRPSSQRGRSPSKRSQLSPIQRTRGSPSERSHGSLSERSPSSPFPSRPDASLVPARRGGGISKEAAAEAAWSRDAFPAAAPSEAARRK", 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This record is derived from a genomic sequence (NW_003613637.1) annotated using gene prediction method: Gnomon. 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772993", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772993", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YESFHYT", "url": "https://omabrowser.org/oma/group/YESFHYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LD19", "url": "https://www.orthodb.org/?gene=A0A8C2LD19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GA71", "url": "https://www.orthodb.org/?gene=A0A9J7GA71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JXS4", "url": "https://www.orthodb.org/?gene=A0A9J7JXS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14650", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14650", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14650:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14650:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652486", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LD19", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LD19-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD19-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPQRRGPPRVPEGSSAAERRRANGTKKDRLPREAQRTWLRTVALGVGLALITFLLWSSLGIDDDVAEVLARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDMVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDVRQKVQLTIAKAFGISASLLYLTKPTFFSRINSTEAQTAHDEYWHAHVDKVESLSLPQALRTCTGWRRSCGAPAMPSPSLSPATLTMASRTQYSRNEARLGPEDHVWKPVGGAPVWGPSLVNKGTVRPGQVCAHSPHFSPLLLDRVPYELA", "length": 330, "header": "tr|A0A9J7GA71-1|A0A9J7GA71_CRIGR Isoform 1 of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ogfod3 PE=4 SV=1 CANONICAL=A0A9J7GA71-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LD19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71/entry#A0A8C2LD19-1", "sequence": { "sequence": "MAPQRRGPPRVPEGSSAAERRRANGTKKDRLPREAQRTWLRTVALGVGLALITFLLWSSLGIDDDVAEVLARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDMVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDVRQKVQLTIAKAFGISASLLYLTKPTFFSRINSTEAQTAHDEYWHAHVDKVTYGSFDYTSLLYLSDYLEDFGGGRFVFMEEGSNRTVEPRAGRVSFFTSGSENLHRVEKVLWGTRYAITIAFTCNPDHGIEDPVLT", "length": 315, "header": "tr|A0A8C2LD19-1|A0A8C2LD19_CRIGR Computationally mapped isoform of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Ogfod3 PE=3 SV=1 CANONICAL=A0A9J7GA71-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71/entry#A0A9J7GA71-1", "sequence": { "sequence": "MAPQRRGPPRVPEGSSAAERRRANGTKKDRLPREAQRTWLRTVALGVGLALITFLLWSSLGIDDDVAEVLARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDMVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDVRQKVQLTIAKAFGISASLLYLTKPTFFSRINSTEAQTAHDEYWHAHVDKVESLSLPQALRTCTGWRRSCGAPAMPSPSLSPATLTMASRTQYSRNEARLGPEDHVWKPVGGAPVWGPSLVNKGTVRPGQVCAHSPHFSPLLLDRVPYELA", "length": 330, "header": "tr|A0A9J7GA71-1|A0A9J7GA71_CRIGR Isoform 1 of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ogfod3 PE=4 SV=1 CANONICAL=A0A9J7GA71-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71/entry#A0A9J7JXS4-1", "sequence": { "sequence": "MAPQRRGPPRVPEGSSAAERRRANGTKKDRLPREAQRTWLRTVALGVGLALITFLLWSSLGIDDDVAEVLARRGCTPRKCGRGVTDMVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDVRQKVQLTIAKAFGISASLLYLTKPTFFSRINSTEAQTAHDEYWHAHVDKVESLSLPQALRTCTGWRRSCGAPAMPSPSLSPATLTMASRTQYSRNEARLGPEDHVWKPVGGAPVWGPSLVNKGTVRPGQVCAHSPHFSPLLLDRVPYELA", "length": 306, "header": "tr|A0A9J7JXS4-1|A0A9J7JXS4_CRIGR Computationally mapped isoform of 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ogfod3 PE=4 SV=1 CANONICAL=A0A9J7GA71-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772993", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772993", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MLK8-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3", "gene_name": "OGFOD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPQRRGAPKAPEGSGAAERRRQSSTKSVRAPRDVRKRWLRVVVLGSCTALAACLFWGSLGGDDGITEVLAHRSEILPGRFIEVPCSEDYDSHRRFEGCSPRKCGRGISDAVITRDEARRIRSIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQTIFSEEDFQLYRDVRQKVQLAIAQAFGISASSLHLTKPTFFSRINSTEARTAHDEYWHAHVDKVTYGSFDYTSLLYLSDYLDDFGGGRFVFMEEGANKTVEPRAGRVSFFTSGSENLHRVEKVHWGTRYAITIAFSCNPDHGISDPTLT", "length": 315 }, "evidence": [ { "id": "A0A9J7GA71", "url": "https://omabrowser.org/oma/group/A0A9J7GA71/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5M843-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3", "gene_name": "Ogfod3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPQRRGPPRVPEGNSAAERRHANSTKKDRLPQEAQRTWLRIVALGVSLALVTFLLWSSAGIDDDVAEVVAHRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDIVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQTIFSEEDFQLYRDIRQKVQLTIAEAFGIRASLLYLTKPTFFSRINSTEAQTAHDEYWHAHVDKVTYGSFDYTSLLYLSDYLEDFGGGRFVFMEEGSNKTVEPRAGRVSFFTSGSENLHRVEKVLWGTRYAITIAFTCNPDHGIEDPVLT", "length": 315 }, "evidence": [ { "id": "A0A9J7GA71", "url": "https://omabrowser.org/oma/group/A0A9J7GA71/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PK18-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3", "gene_name": "OGFOD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPQRRAATKAPEGNGAAERRNRSSTKKDRAPREVQRLWQRPWLRTAGLGAGFVLTALLLWSSLGADDGVAEVLARRGEVVAGRFIEVPCSEDYDSHRRFEGCTPRKCGRGVTDVVITREEAERIRSVAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTFFSRINSTEARTAHDEYWHAHVDKVTYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKTVEPRAGRVSFFTSGSENLHRVEKVHWGTRYAITIAFSCNPDHGIEDPAFP", "length": 319 }, "evidence": [ { "id": "A0A9J7GA71", "url": "https://omabrowser.org/oma/group/A0A9J7GA71/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D136-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3", "gene_name": "Ogfod3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPQRRGPPRIPEGSSAAERRRATSTKKDRLPREAQRTWLRIVAFGVGLALVTCLLWSSVGIDDDVAEVVARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDIVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDIRQKVQLTIAEAFGISASLLYLTKPTFFSRINSTEARTAHDEYWHAHVDKVTYGSFDYTSLLYLSDYLEDFGGGRFVFMEEGSNKTVEPRAGRVSFFTSGSENLHRVEKVLWGTRYAITIAFTCNPDHGIEDPVLT", "length": 315 }, "evidence": [ { "id": "A0A9J7GA71", "url": "https://omabrowser.org/oma/group/A0A9J7GA71/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen", "id": "GO:0016705", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016705", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 24, "end_pos": 26 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GA77-1", "uniprot_ac": "A0A9J7GA77", "uniprot_id": "A0A9J7GA77_CRIGR", "mass": { "chemical_mass": 15772.0, "monoisotopic_mass": 15772.0 }, "refseq": { "ac": "XP_007639757", "name": "small integral membrane protein 23", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639757" }, "gene_names": [ { "name": "Smim23", "type": "recommended", "evidence": [ { "id": "A0A9J7GA77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA77" } ] }, { "name": "Smim23", "type": "synonym", "evidence": [ { "id": "XP_007639757", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639757" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 23", "type": "synonym", "evidence": [ { "id": "A0A9J7GA77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA77/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 23", "type": "synonym", "evidence": [ { "id": "XP_007639757", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639757" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613815.1) annotated using gene prediction method: Gnomon. 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"MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPMVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQAVPEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPLASGHQGEGDAPSSEPGATNIQQPSSPDPSTKQSSSLYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHEDSPRPLAAIPSSQEPVNPSSEVSPTRGCSPPKSPEKPPRSSSSESCPPSPQPTKVSRHVSSSPESLKPTPAPGARREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSTQRWGKSRSPQRRGRSRSQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPVRRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSHSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRRSRSRSLGRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSLEMKKSHVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSETPPRRSRSGSSPPKQKSKTSPRLSHSSSSPQPKVKSGTPPRSGSVTNIQVDEHSATPQRQSRSESSPDGEVKSRTPSRQSCSGSSPQMKSSTPPRQSPCRSSSPQPKMKTVISPRRSHSGSSSPSPSRVTSGTPPRQSRSVSPCSKVDSGLLPRHSRSRSSSPDTKVEPGTPLRHSGSTSPYPKGMLQTPPEQNVPASKSPCPQEKSKDSSTESSGSFSVCPGVTLSTLPGESCFGSSVVQQKGQCQTWPDPRSDTSSPEVRQGHLESPSLQSKYQTSPKGGPSRSSSPVTELVLRSPVNQDKFELSTDPKLKSELSPEQVKTKPDSNLYPSIESKSLLVQSRLEPSELKEKLGLIQEDVTAPSSLPIQDRPESSTVLKDTPRVLLKERIGAGSPPGTRDQNSSLPISSQDELMEAEKSEQPLSQVIQSLSPEHKEMPGSNIESSPEIERPAVLSALDQSQAQPSSKPAEIPAVASCWSGLQMSPEHKELSHSSPGENSFESSLELRNSGPISEVNAGFSPEVKEELNGPFLNQTETDPSLDMKEQSARSSRRSSSELSPEVVEKVGIFSNQSVSSPTLETVHRTPSRERSSSASSPELKDGLPRTPSRRSRSGSSPGLRDGSGSPSRHSLSGSSPGIKDAPHTPSRGRSECDSSPEPKALPQTPRARSPPSSPEHNNKSVTPQRERSGSESSVEQKTVARTSPGQRSRSGSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVESKSRPSPRLSRSGSSPEMKDKPRGLQRAQSGTDSSPEHKIPAPRALPRRSRSGSSSKDRGPSPEGSSSSESSPEHPPKSRTARRGSRSSMEPKTKSRTPPRRRSSRSSPELTRKARVSRRSRSASSSPETRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRDKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRATRGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSARTPMSVLQQSGGSMMDGPGPRIPDHPRASVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRAPAATAVNLAGARTPAALAALSLTGSGTPPAAANYPSSSRTPQAPTPANLVGPRSAHGTAPVNIAGSRTPAALAPSNLSSARMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSERASSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGLPHAEGGEPPASTGAQQPSSLAALQPTKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPVPAPKEAVREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERHQPSPQPSPRDQQSSERVSWRGQRGDSRSPGHKRRKETPSPRPNRHRSSRSP", "length": 2704, "header": "tr|A0A9J7GAA7-1|A0A9J7GAA7_CRIGR Isoform 1 of Serine/arginine repetitive matrix protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Srrm2 PE=4 SV=1 CANONICAL=A0A9J7GAA7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7/entry#A0A9J7GAA7-1", "sequence": { "sequence": "MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPMVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQAVPEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPLASGHQGEGDAPSSEPGATNIQQPSSPDPSTKQSSSLYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHEDSPRPLAAIPSSQEPVNPSSEVSPTRGCSPPKSPEKPPRSSSSESCPPSPQPTKVSRHVSSSPESLKPTPAPGARREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSTQRWGKSRSPQRRGRSRSQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPVRRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSHSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRRSRSRSLGRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSLEMKKSHVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSETPPRRSRSGSSPPKQKSKTSPRLSHSSSSPQPKVKSGTPPRSGSVTNIQVDEHSATPQRQSRSESSPDGEVKSRTPSRQSCSGSSPQMKSSTPPRQSPCRSSSPQPKMKTVISPRRSHSGSSSPSPSRVTSGTPPRQSRSVSPCSKVDSGLLPRHSRSRSSSPDTKVEPGTPLRHSGSTSPYPKGMLQTPPEQNVPASKSPCPQEKSKDSSTESSGSFSVCPGVTLSTLPGESCFGSSVVQQKGQCQTWPDPRSDTSSPEVRQGHLESPSLQSKYQTSPKGGPSRSSSPVTELVLRSPVNQDKFELSTDPKLKSELSPEQVKTKPDSNLYPSIESKSLLVQSRLEPSELKEKLGLIQEDVTAPSSLPIQDRPESSTVLKDTPRVLLKERIGAGSPPGTRDQNSSLPISSQDELMEAEKSEQPLSQVIQSLSPEHKEMPGSNIESSPEIERPAVLSALDQSQAQPSSKPAEIPAVASCWSGLQMSPEHKELSHSSPGENSFESSLELRNSGPISEVNAGFSPEVKEELNGPFLNQTETDPSLDMKEQSARSSRRSSSELSPEVVEKVGIFSNQSVSSPTLETVHRTPSRERSSSASSPELKDGLPRTPSRRSRSGSSPGLRDGSGSPSRHSLSGSSPGIKDAPHTPSRGRSECDSSPEPKALPQTPRARSPPSSPEHNNKSVTPQRERSGSESSVEQKTVARTSPGQRSRSGSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVESKSRPSPRLSRSGSSPEMKDKPRGLQRAQSGTDSSPEHKIPAPRALPRRSRSGSSSKDRGPSPEGSSSSESSPEHPPKSRTARRGSRSSMEPKTKSRTPPRRRSSRSSPELTRKARVSRRSRSASSSPETRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRDKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRATRGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSARTPMSVLQQSGGSMMDGPGPRIPDHPRASVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRAPAATAVNLAGARTPAALAALSLTGSGTPPAAANYPSSSRTPQAPTPANLVGPRSAHGTAPVNIAGSRTPAALAPSNLSSARMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSERASSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGLPHAEGGEPPASTGAQQPSSLAALQPTKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPVPAPKEAVREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERHQPSPQPSPRDQQSSERVSWRGQRGDSRSPGHKRRKETPSPRPNRHRSSRSP", "length": 2704, "header": "tr|A0A9J7GAA7-1|A0A9J7GAA7_CRIGR Isoform 1 of Serine/arginine repetitive matrix protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Srrm2 PE=4 SV=1 CANONICAL=A0A9J7GAA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7/entry#A0A9J7GFB2-1", "sequence": { "sequence": "MLLEKDVNPGGKEETPGQRPMVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQAVPEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPLASGHQGEGDAPSSEPGATNIQQPSSPDPSTKQSSSLYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHEDSPRPLAAIPSSQEPVNPSSEVSPTRGCSPPKSPEKPPRSSSSESCPPSPQPTKVSRHVSSSPESLKPTPAPGARREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSTQRWGKSRSPQRRGRSRSQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPVRRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSHSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRSGRSRSRTPARRRSRSRSLGRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSLEMKKSHVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSETPPRRSRSGSSPPKQKSKTSPRLSHSSSSPQPKVKSGTPPRSGSVTNIQVDEHSATPQRQSRSESSPDGEVKSRTPSRQSCSGSSPQMKSSTPPRQSPCRSSSPQPKMKTVISPRRSHSGSSSPSPSRVTSGTPPRQSRSVSPCSKVDSGLLPRHSRSRSSSPDTKVEPGTPLRHSGSTSPYPKGMLQTPPEQNVPASKSPCPQEKSKDSSTESSGSFSVCPGVTLSTLPGESCFGSSVVQQKGQCQTWPDPRSDTSSPEVRQGHLESPSLQSKYQTSPKGGPSRSSSPVTELVLRSPVNQDKFELSTDPKLKSELSPEQVKTKPDSNLYPSIESKSLLVQSRLEPSELKEKLGLIQEDVTAPSSLPIQDRPESSTVLKDTPRVLLKERIGAGSPPGTRDQNSSLPISSQDELMEAEKSEQPLSQVIQSLSPEHKEMPGSNIESSPEIERPAVLSALDQSQAQPSSKPAEIPAVASCWSGLQMSPEHKELSHSSPGENSFESSLELRNSGPISEVNAGFSPEVKEELNGPFLNQTETDPSLDMKEQSARSSRRSSSELSPEVVEKVGIFSNQSVSSPTLETVHRTPSRERSSSASSPELKDGLPRTPSRRSRSGSSPGLRDGSGSPSRHSLSGSSPGIKDAPHTPSRGRSECDSSPEPKALPQTPRARSPPSSPEHNNKSVTPQRERSGSESSVEQKTVARTSPGQRSRSGSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVESKSRPSPRLSRSGSSPEMKDKPRGLQRAQSGTDSSPEHKIPAPRALPRRSRSGSSSKDRGPSPEGSSSSESSPEHPPKSRTARRGSRSSMEPKTKSRTPPRRRSSRSSPELTRKARVSRRSRSASSSPETRSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRDKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRATRGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSARTPMSVLQQSGGSMMDGPGPRIPDHPRASVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRAPAATAVNLAGARTPAALAALSLTGSGTPPAAANYPSSSRTPQAPTPANLVGPRSAHGTAPVNIAGSRTPAALAPSNLSSARMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSERASSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGLPHAEGGEPPASTGAQQPSSLAALQPTKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPVPAPKEAVREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERHQPSPQPSPRDQQSSERVSWRGQRGDSRSPGHKRRKETPSPRPNRHRSSRSP", "length": 2608, "header": "tr|A0A9J7GFB2-1|A0A9J7GFB2_CRIGR Computationally mapped isoform of Serine/arginine repetitive matrix protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Srrm2 PE=4 SV=1 CANONICAL=A0A9J7GAA7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2289, "start_aa": "Thr", "end_pos": 2289, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2289", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2553, "start_aa": "Thr", "end_pos": 2553, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2553", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 365, "start_aa": "Thr", "end_pos": 365, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr365", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770675", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770675", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1189, "end_pos": 1191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1320, "end_pos": 1322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1358, "end_pos": 1360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1465, "end_pos": 1467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2053, "end_pos": 2055, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2320, "end_pos": 2322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2334, "end_pos": 2336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 743, "end_pos": 745, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAA7" }, { "id": "SM01104", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Spt5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 559, "end_pos": 680, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 365, 2289, 2553 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280902" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mcrip2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAB2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAB2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759898", "url": "https://www.ncbi.nlm.nih.gov/gene/100759898", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029428", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029428", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759898", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759898", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAB2", "url": "https://www.orthodb.org/?gene=A0A9J7GAB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF14799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280902", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MDE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAARAADRASRARAALGTVSGTLATGKCPSHLRRNPERRGPPEPRKASRPTGTASAWRSGSSGPRLVFNRVNGRRPLTTPTSLEGTQETYTLAHEENVRFVSEAWQQVERQLDGGPADESAPRPVQYVENTPDPRLQNFVPIDLDEWWAQQFLARITNCS", "length": 161, "header": "tr|A0A9J7GAB2-1|A0A9J7GAB2_CRIGR Isoform 1 of MAPK regulated corepressor interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcrip2 PE=3 SV=1 CANONICAL=A0A9J7GAB2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2/entry#A0A8C2MDE4-1", "sequence": { "sequence": "MYTITKGPSKLVAQRRTGPTQQQVESRLGELLKCRQPAPPTALPAREQPSAQSQGPWPLASSGPRLVFNRVNGRRPLTTPTSLEGTQETYTLAHEENVRFVSEAWQQVERQLDGGPADESAPRPVQYVENTPDPRLQNFVPIDLDEWWAQQFLARITNCS", "length": 160, "header": "tr|A0A8C2MDE4-1|A0A8C2MDE4_CRIGR Computationally mapped isoform of MAPK regulated corepressor interacting protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mcrip2 PE=3 SV=1 CANONICAL=A0A9J7GAB2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2/entry#A0A9J7GAB2-1", "sequence": { "sequence": "MPAARAADRASRARAALGTVSGTLATGKCPSHLRRNPERRGPPEPRKASRPTGTASAWRSGSSGPRLVFNRVNGRRPLTTPTSLEGTQETYTLAHEENVRFVSEAWQQVERQLDGGPADESAPRPVQYVENTPDPRLQNFVPIDLDEWWAQQFLARITNCS", "length": 161, "header": "tr|A0A9J7GAB2-1|A0A9J7GAB2_CRIGR Isoform 1 of MAPK regulated corepressor interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcrip2 PE=3 SV=1 CANONICAL=A0A9J7GAB2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" } ], 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Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027279047.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279047" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237616", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22611", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22611", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118237616", "url": "https://www.ncbi.nlm.nih.gov/gene/118237616", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118237616", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237616", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPKVKVH", "url": "https://omabrowser.org/oma/group/CPKVKVH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GAG2", "url": "https://www.orthodb.org/?gene=A0A9J7GAG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46751:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46751:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00095", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279047", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLWGLLPFLVPFIFPWGIWEPELAEGFFAGSCPRVRVKCEIEERNECTRHRHCPEKKRCCLFSCGKKCLDIKQDVCSLPQEAGPCLAYLPRWWYNKETELCTEFIYGGCQGNPNNFQTEGICRVICKKKHLSSWI", "length": 136, "header": "tr|A0A9J7GAG2-1|A0A9J7GAG2_CRIGR Isoform 1 of WAP four-disulfide core domain protein 6A OS=Cricetulus griseus OX=10029 GN=LOC118237616 PE=4 SV=1 CANONICAL=A0A9J7GAG2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2/entry#A0A9J7GAG2-1", "sequence": { "sequence": "MRLWGLLPFLVPFIFPWGIWEPELAEGFFAGSCPRVRVKCEIEERNECTRHRHCPEKKRCCLFSCGKKCLDIKQDVCSLPQEAGPCLAYLPRWWYNKETELCTEFIYGGCQGNPNNFQTEGICRVICKKKHLSSWI", "length": 136, "header": "tr|A0A9J7GAG2-1|A0A9J7GAG2_CRIGR Isoform 1 of WAP four-disulfide core domain protein 6A OS=Cricetulus griseus OX=10029 GN=LOC118237616 PE=4 SV=1 CANONICAL=A0A9J7GAG2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118237616", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237616", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O95925-1", "protein_name": "Eppin", "gene_name": "EPPIN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSSGLLSLLVLFVLLANVQGPGLTDWLFPRRCPKIREECEFQERDVCTKDRQCQDNKKCCVFSCGKKCLDLKQDVCEMPKETGPCLAYFLHWWYDKKDNTCSMFVYGGCQGNNNNFQSKANCLNTCKNKRFP", "length": 133 }, "evidence": [ { "id": "A0A9J7GAG2", "url": "https://omabrowser.org/oma/group/A0A9J7GAG2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" }, { "id": "PS50279", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50279" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BPTI/Kunitz inhibitor", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 127, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GAG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG2" }, { "id": "PS51390", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WAP", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 73, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GAG7-1", "uniprot_ac": "A0A9J7GAG7", "uniprot_id": "A0A9J7GAG7_CRIGR", "mass": { "chemical_mass": 71318.0, "monoisotopic_mass": 71318.0 }, "refseq": { "ac": "XP_027281319", "name": "protein DDC8 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281319" }, "gene_names": [ { "name": "Cep295nl", "type": "recommended", "evidence": [ { "id": "A0A9J7GAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7" } ] }, { "name": "Cep295nl", "type": "synonym", "evidence": [ { "id": "XP_027281319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281319" } ] } ], "protein_names": [ { "name": "Protein DDC8 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7/entry#names_and_taxonomy" } ] }, { "name": "protein DDC8 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281319" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281319" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep295nl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAG7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767828", "url": "https://www.ncbi.nlm.nih.gov/gene/100767828", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR060287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767828", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767828", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAG7", "url": "https://www.orthodb.org/?gene=A0A9J7GAG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28375", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28375", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAKLTEMQRDMEQSTELSTSCDEEALFLRQKPELMQVQDKADVTLQQWKAQQLQRLAKELKAEWQEARLQQFKDMEHLYLAHLLDEATGQAMGNDFIVEEHNRKGSAKHMRTKERNRAPFREKSRREEHPRQQPKSRKKATCSERRGTTKARGPNPSEKGKGKRVSSSKSTGGYQRVSRGPDINPLLAGAGETKWVEEVQKEIPREGRRRMRRGTSYFVQNINQNSRDQSLQGKTADLEKPSPLTSTFRQEATSPVISSFRQEATSPVTSSFRQEATSPVISSFRQEATSPLSSSFRQEATSPLSSTFRQEATSPLSSTFRQEATSQGAPSKYSDKNQWHKDIESAFEELFNTNRKLKNHLNLHLEQKLKVDPGPDKLQSPAETQVVRSDTPREANAEEAETMAEEPGSPSDMVAHETWSKTDLKQLLGETEYPRYQQMPKHLPKSESLVSVPVAGTSSKQDDALKDDAFSGSPQSGQEPPKSATMDEESLKPYLEEQAKAVASWMAMRQKQKAELEQRRQKTLLEMTEHPDMSLEIHYKAELEEERRERRRLRLALLKTSYSSGVQVPAPSRTISLDSSLLDEDKQSEMIRDLQQQILEQNKLHKQFLEKARKRLQEFQKSF", "length": 624, "header": "tr|A0A9J7GAG7-1|A0A9J7GAG7_CRIGR Isoform 1 of Protein DDC8 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep295nl PE=4 SV=1 CANONICAL=A0A9J7GAG7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7/entry#A0A9J7GAG7-1", "sequence": { "sequence": "MSAKLTEMQRDMEQSTELSTSCDEEALFLRQKPELMQVQDKADVTLQQWKAQQLQRLAKELKAEWQEARLQQFKDMEHLYLAHLLDEATGQAMGNDFIVEEHNRKGSAKHMRTKERNRAPFREKSRREEHPRQQPKSRKKATCSERRGTTKARGPNPSEKGKGKRVSSSKSTGGYQRVSRGPDINPLLAGAGETKWVEEVQKEIPREGRRRMRRGTSYFVQNINQNSRDQSLQGKTADLEKPSPLTSTFRQEATSPVISSFRQEATSPVTSSFRQEATSPVISSFRQEATSPLSSSFRQEATSPLSSTFRQEATSPLSSTFRQEATSQGAPSKYSDKNQWHKDIESAFEELFNTNRKLKNHLNLHLEQKLKVDPGPDKLQSPAETQVVRSDTPREANAEEAETMAEEPGSPSDMVAHETWSKTDLKQLLGETEYPRYQQMPKHLPKSESLVSVPVAGTSSKQDDALKDDAFSGSPQSGQEPPKSATMDEESLKPYLEEQAKAVASWMAMRQKQKAELEQRRQKTLLEMTEHPDMSLEIHYKAELEEERRERRRLRLALLKTSYSSGVQVPAPSRTISLDSSLLDEDKQSEMIRDLQQQILEQNKLHKQFLEKARKRLQEFQKSF", "length": 624, "header": "tr|A0A9J7GAG7-1|A0A9J7GAG7_CRIGR Isoform 1 of Protein DDC8 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep295nl PE=4 SV=1 CANONICAL=A0A9J7GAG7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767828", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767828", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAG7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAG7", "url": 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027280457.1. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAI9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 358, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { 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This record is derived from a genomic sequence (NW_003613598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003495711.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495711", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495711" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771249", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAJ7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19769", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19769", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19802", "url": 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##RefSeq-Attributes-START## assembly gap :: added 97 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) and transcript sequence (IACG01031419.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027280928.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280928", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280928" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pgap6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAN1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758458", "url": "https://www.ncbi.nlm.nih.gov/gene/100758458", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758458", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758458", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAN1", "url": "https://www.orthodb.org/?gene=A0A9J7GAN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280928", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280928", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLLARPPPTAAGDSKKSESGLVSEHFSQAPQKLSFYSWYGSTQLFHFRVPPDTVLLRWLLHASQSGPSCTNVEITVHFRYGAPPVINPLGSRFPDNTLKQVSFHIRTLLSTMLLGNTSVSISHPAAGDWFVVAHLPPSSQKIEVKGSVPTCAYMFQPDMLAMRVVEVSILEPDVPLPQTLLSHPSYLKIFVPEYTQELRLELQDCVSSVSSGCPVRLTVGGSTLPRNFQKVLSCTGLTPSCLLLLSSPPWGQWLQMTIENLAGPHMSVVFTAKAAFTVCRPWSVTFHHLMKNNPNQSSDTSVGRLSQDPTHWELGRSGRVGSVPFCLLNYPVMREDTDVLSVHFQPLNGAFVMVHSNVPSVMQLRLDTGMDSGGSLIIILKTNQTEVTNDTVVAACVNAASPFLSFNTSFNCTTAFFQGHPMFLSASSHTANLIIPYPETDNWYLSLQLVCPESSEDCEQASARVETTLYLVPCFKDCGPYGQCLLLRRHGYLYAGCSCKAGWRGWSCTDNSTAQTVGQQRAAALLLTLSNLMFLAPIAVSVHRSFLVEASVYFYTMFFSTFYHACDQPGDAVLCILSYDTLQYCDFLGSGAATWVTILCMARLKTILKQVLFVLGILVMAMSLQMDRRGIWNLMGPCLFAFVIMASMWMYRCGHRRQCYPTSWQRWVFYILPGISMASVGIAIYTSMMTSENYYYTHSIWHILLAGCAAFLLPPREEQAESWACLQTFPCHYQICRNDRDELYTVT", "length": 748, "header": "tr|A0A9J7GAN1-1|A0A9J7GAN1_CRIGR Isoform 1 of Post-GPI attachment to proteins factor 6 OS=Cricetulus griseus OX=10029 GN=Pgap6 PE=3 SV=1 CANONICAL=A0A9J7GAN1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1/entry#A0A9J7GAN1-1", "sequence": { "sequence": "MLLLARPPPTAAGDSKKSESGLVSEHFSQAPQKLSFYSWYGSTQLFHFRVPPDTVLLRWLLHASQSGPSCTNVEITVHFRYGAPPVINPLGSRFPDNTLKQVSFHIRTLLSTMLLGNTSVSISHPAAGDWFVVAHLPPSSQKIEVKGSVPTCAYMFQPDMLAMRVVEVSILEPDVPLPQTLLSHPSYLKIFVPEYTQELRLELQDCVSSVSSGCPVRLTVGGSTLPRNFQKVLSCTGLTPSCLLLLSSPPWGQWLQMTIENLAGPHMSVVFTAKAAFTVCRPWSVTFHHLMKNNPNQSSDTSVGRLSQDPTHWELGRSGRVGSVPFCLLNYPVMREDTDVLSVHFQPLNGAFVMVHSNVPSVMQLRLDTGMDSGGSLIIILKTNQTEVTNDTVVAACVNAASPFLSFNTSFNCTTAFFQGHPMFLSASSHTANLIIPYPETDNWYLSLQLVCPESSEDCEQASARVETTLYLVPCFKDCGPYGQCLLLRRHGYLYAGCSCKAGWRGWSCTDNSTAQTVGQQRAAALLLTLSNLMFLAPIAVSVHRSFLVEASVYFYTMFFSTFYHACDQPGDAVLCILSYDTLQYCDFLGSGAATWVTILCMARLKTILKQVLFVLGILVMAMSLQMDRRGIWNLMGPCLFAFVIMASMWMYRCGHRRQCYPTSWQRWVFYILPGISMASVGIAIYTSMMTSENYYYTHSIWHILLAGCAAFLLPPREEQAESWACLQTFPCHYQICRNDRDELYTVT", "length": 748, "header": "tr|A0A9J7GAN1-1|A0A9J7GAN1_CRIGR Isoform 1 of Post-GPI attachment to proteins factor 6 OS=Cricetulus griseus OX=10029 GN=Pgap6 PE=3 SV=1 CANONICAL=A0A9J7GAN1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 10, "start_aa": "Thr", "end_pos": 10, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr10", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758458", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758458", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN1" }, { "id": "PS00022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00022" }, { "id": "PS01186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 498, "end_pos": 509, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 10 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 408, "end_pos": 410 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 512, "end_pos": 514 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GAN8-1", "uniprot_ac": "A0A9J7GAN8", "uniprot_id": "A0A9J7GAN8_CRIGR", "mass": { "chemical_mass": 57804.0, "monoisotopic_mass": 57804.0 }, "refseq": { "ac": "XP_003512648", "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 9B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512648" }, "gene_names": [ { "name": "Ccdc9b", "type": "recommended", "evidence": [ { "id": "A0A9J7GAN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8" } ] }, { "name": "Ccdc9b", "type": "synonym", "evidence": [ { "id": "XP_003512648", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512648" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 9B", "type": "synonym", "evidence": [ { "id": "XP_003512648", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512648" }, { "id": "A0A9J7GAN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615510.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003512648.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512648", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512648" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc9b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8", "locus": {} } ], "crossref": [ { "id": "100761022", "url": "https://www.ncbi.nlm.nih.gov/gene/100761022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761022", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761022", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAN8", "url": "https://www.orthodb.org/?gene=A0A9J7GAN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15635", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15635", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15635:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15635:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512648", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512648", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISCAEQRSPSRQGEAXTGPALVAPASLQLWLXGGCFGILSVPAISMHLAGPHRAESTMRRHEEKDAELDRRIVALRKKNQALLRRYQEIEEDRRQAEQGGMAVTTPGLFQPDCLTVTISQVPGEKRVVSRHWARVPSSPGMTEALTDDDAADSPGTFCMEDRVELAVTMENKARAKRIVSEKPTTQARTPRAKGTSGGGRGQSLPLQMTSSTDSSGKGVLDPRSPGTVPGPPPQQPLGLPPEASWDYMQWKQEREQIDLARLARHRNAQGDWSRPWDLDKAKPMQQDCNKQRDKDSTTGRKGPRTPLSMDGKRRGGQSGRPSVTSTIGSKAQGKDRLTGRARRYDMKEDEELQSQEGSQSTTKTSNAENECVQKQSEMEPGRQETMPATSPALASPEGLKGESGTSTASVARGSPQNSDLAPLDLSLGGASSPKPEKSARGLSPKCGAPQSPVPWPDGSKQQTLAWNDHQPGSEGHTCAESQREAEASKPKEVRAGKGGAQQSLAPRSRPPRGIGQRARGTSGRTRAGGPGLAGRW", "length": 537, "header": "tr|A0A9J7GAN8-1|A0A9J7GAN8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 9B OS=Cricetulus griseus OX=10029 GN=Ccdc9b PE=4 SV=1 CANONICAL=A0A9J7GAN8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8/entry#A0A9J7GAN8-1", "sequence": { "sequence": "MISCAEQRSPSRQGEAXTGPALVAPASLQLWLXGGCFGILSVPAISMHLAGPHRAESTMRRHEEKDAELDRRIVALRKKNQALLRRYQEIEEDRRQAEQGGMAVTTPGLFQPDCLTVTISQVPGEKRVVSRHWARVPSSPGMTEALTDDDAADSPGTFCMEDRVELAVTMENKARAKRIVSEKPTTQARTPRAKGTSGGGRGQSLPLQMTSSTDSSGKGVLDPRSPGTVPGPPPQQPLGLPPEASWDYMQWKQEREQIDLARLARHRNAQGDWSRPWDLDKAKPMQQDCNKQRDKDSTTGRKGPRTPLSMDGKRRGGQSGRPSVTSTIGSKAQGKDRLTGRARRYDMKEDEELQSQEGSQSTTKTSNAENECVQKQSEMEPGRQETMPATSPALASPEGLKGESGTSTASVARGSPQNSDLAPLDLSLGGASSPKPEKSARGLSPKCGAPQSPVPWPDGSKQQTLAWNDHQPGSEGHTCAESQREAEASKPKEVRAGKGGAQQSLAPRSRPPRGIGQRARGTSGRTRAGGPGLAGRW", "length": 537, "header": "tr|A0A9J7GAN8-1|A0A9J7GAN8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 9B OS=Cricetulus griseus OX=10029 GN=Ccdc9b PE=4 SV=1 CANONICAL=A0A9J7GAN8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAN8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761022", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761022", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GAP3-1", "uniprot_ac": "A0A9J7GAP3", "uniprot_id": "A0A9J7GAP3_CRIGR", "mass": { "chemical_mass": 26171.0, "monoisotopic_mass": 26171.0 }, "refseq": { "ac": "XP_027280698", "name": "BTB/POZ domain-containing protein KCTD5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280698" }, "gene_names": [ { "name": "Kctd5", "type": "recommended", "evidence": [ { "id": "A0A9J7GAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3" } ] }, { "name": "Kctd5", "type": "synonym", "evidence": [ { "id": "XP_027280698", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280698" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD5", "type": "synonym", "evidence": [ { "id": "XP_027280698", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280698" }, { "id": "A0A9J7GAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280698", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280698" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kctd5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772768", "url": "https://www.ncbi.nlm.nih.gov/gene/100772768", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772768", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772768", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GAP3", "url": "https://www.orthodb.org/?gene=A0A9J7GAP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14958", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14958", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14958:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14958:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280698", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280698", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAENHCELLPPAPSGLGAGLGGGLCRRCSAGLGALPHRPSGVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEKAKILQERGSRM", "length": 234, "header": "tr|A0A9J7GAP3-1|A0A9J7GAP3_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD5 OS=Cricetulus griseus OX=10029 GN=Kctd5 PE=4 SV=1 CANONICAL=A0A9J7GAP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAP3/entry#A0A9J7GAP3-1", "sequence": { "sequence": "MAENHCELLPPAPSGLGAGLGGGLCRRCSAGLGALPHRPSGVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTTSEPSEKAKILQERGSRM", "length": 234, "header": "tr|A0A9J7GAP3-1|A0A9J7GAP3_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD5 OS=Cricetulus griseus OX=10029 GN=Kctd5 PE=4 SV=1 CANONICAL=A0A9J7GAP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614077.1) and transcript sequence (IACG01005045.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007643314.1. 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"site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 156, "start_aa": "Thr", "end_pos": 156, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr156", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAQ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAQ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "attachment of GPI anchor to protein", "id": "GO:0016255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016255", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAQ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "GPI-anchor transamidase complex", "id": "GO:0042765", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR12596", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12596", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12596:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12596:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281004", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALHFQNLAELEALCTRLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRISPLPIEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFRDIIADVKRFLQGTVGHCIIGVIILSELTQEMNLVDYSRPSVKHRKVATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQNLVMQVLKLVLSCLSFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASALPVDVAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDARLPRCTNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRVPEKAWKIVKVYACMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDTYSLNDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILTLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDSHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRESMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFNELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHAELCSLDMMS", "length": 1108, "header": "tr|A0A9J7GAR9-1|A0A9J7GAR9_CRIGR Isoform 1 of Ran-binding protein 17 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762081 PE=3 SV=1 CANONICAL=A0A9J7GAR9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9/entry#A0A9J7GAR9-1", "sequence": { "sequence": "MALHFQNLAELEALCTRLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRISPLPIEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFRDIIADVKRFLQGTVGHCIIGVIILSELTQEMNLVDYSRPSVKHRKVATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQNLVMQVLKLVLSCLSFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASALPVDVAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDARLPRCTNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRVPEKAWKIVKVYACMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDTYSLNDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILTLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDSHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRESMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFNELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHAELCSLDMMS", "length": 1108, "header": "tr|A0A9J7GAR9-1|A0A9J7GAR9_CRIGR Isoform 1 of Ran-binding protein 17 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762081 PE=3 SV=1 CANONICAL=A0A9J7GAR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9/entry#A0A9J7GB92-1", "sequence": { "sequence": "MALHFQNLAELEALCTRLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRISPLPIEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFRDIIADVKRFLQGTVGHCIIGVIILSELTQEMNLVLAKPLNLQDQDQQNLVMQVLKLVLSCLSFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASALPVDVAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDARLPRCTNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRVPEKAWKIVKVYACMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDTYSLNDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILTLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDSHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRESMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFNELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHAELCSLDMMS", "length": 1073, "header": "tr|A0A9J7GB92-1|A0A9J7GB92_CRIGR Computationally mapped isoform of Ran-binding protein 17 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100762081 PE=3 SV=1 CANONICAL=A0A9J7GAR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9/entry#A0A9J7GFS8-1", "sequence": { "sequence": "MALHFQNLAELEALCTRLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRISPLPIEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFRDIIADVKRFLQGTVGHCIIGVIILSELTQEMNLVDYSRPSVKHRKVATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQNLVMQVLKLVLSCLSFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASALPVDVAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDARLPRCTNEKIELAILWFLDQFRKTYVGDQLQRTSKVYACMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDTYSLNDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILTLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDSHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRESMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFNELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHAELCSLDMMS", "length": 1088, "header": "tr|A0A9J7GFS8-1|A0A9J7GFS8_CRIGR Computationally mapped isoform of Ran-binding protein 17 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100762081 PE=3 SV=1 CANONICAL=A0A9J7GAR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9/entry#A0A9J7H5H8-1", "sequence": { "sequence": "MQVLKLVLSCLSFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASALPVDVAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDARLPRCTNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRVPEKAWKIVKVYACMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDTYSLNDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILTLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDSHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRESMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFNELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHAELCSLDMMS", "length": 893, "header": "tr|A0A9J7H5H8-1|A0A9J7H5H8_CRIGR Computationally mapped isoform of Ran-binding protein 17 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100762081 PE=3 SV=1 CANONICAL=A0A9J7GAR9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762081", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762081", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "pmid": "" }, { "name": "nuclear export signal receptor activity", "id": "GO:0005049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005049", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein export from nucleus", "id": "GO:0006611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006611", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1069, "end_pos": 1071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1081, "end_pos": 1083, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 799, "end_pos": 801, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAR9" }, { "id": "SM00913", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Importin N-terminal", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 95, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1069, "end_pos": 1071 }, { "start_pos": 1081, "end_pos": 1083 }, { "start_pos": 360, "end_pos": 362 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 799, "end_pos": 801 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GAT6-1", "uniprot_ac": "A0A9J7GAT6", "uniprot_id": "A0A9J7GAT6_CRIGR", "mass": { "chemical_mass": 28535.0, "monoisotopic_mass": 28535.0 }, "refseq": { "ac": "XP_007640385", "name": "RING finger protein 151", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640385" }, "gene_names": [ { "name": 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"https://www.uniprot.org/uniprotkb/A0A9J7KA55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1024, "header": "tr|A0A9J7GAX2-1|A0A9J7GAX2_CRIGR Isoform 1 of Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Abtb2 PE=4 SV=1 CANONICAL=A0A9J7GAX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA55-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAX2/entry#A0A9J7KA55-1", "sequence": { "sequence": "MAGTYSSTLKTLEDLTLDSGYGAGDSCRSLSLSSSKSNSQALNSSAQQHRGAAWWCYSGSMNSRHNSWDTVNTVLPEDPEVADLFSRCPRLPELEEFPWTEGDVARVLRKSIGGRRLPAFSAEAVRRLAGLLRRALIRVAREAQRLSVLHAKCTRFEVQSAVRLVHSWALAESCALAAVKALSLYSMSAGDGLRRGKSARCGLTFSVGRFFRWMVDTRISVRIHEYAAISLTACMENLVEEIRARVLASQSPDGGGAGGGEVSAEALEMVINNDAELWGVLQPYEHLICGKNANGVLSLPAYFSPYNGGSLGHDERADAYAQLELRTLEQSLLATCVGSISELSDLVSRAMHHMQGRHPLCPGTSPARQARQPPQPITWSPDALHTLYYFLRCPQMESMENPNLDPPRMTLNNERPECCFSSFRRLDARAATERFNQDLGFRMLNCGRTDLISQAIEALGPDGVNTMDDQGMTPLMYACAAGDEAMVQMLIDAGANLDIQVPSNSPRHPSIHPDSRHWTSLTFAVLHGHISVVQLLLDAGANVEGSAVTSGEDSYAETPLQLASAAGNYELVSLLLSRGADPLLSMLEANGMASSLHEDMNCFSHSAAHGHRNVLRKLLTQPQQAKADVLSLEEILAEGVEESDTSSQGSSEGPVRLSRTRTKALQEAMYYSAEHGYVDITMELRALGVPWKLHIWIESLRTSFSQSRYSVVQGLLRDFSSIKEEEYNEELVTEGLQLMFDILKTSKNDSVLQQLAAIFTHCYGSSPIPSIPEIRKTLPARLDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDIKYHIFQMLMQYLYYGGTESMEIPTADILQLLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIHNAPELALFCEGFFLKHMKALLEQDAFRQLIYGRSSKVQGLDPLQDLQSTLAERVHSVYVTSRV", "length": 973, "header": "tr|A0A9J7KA55-1|A0A9J7KA55_CRIGR Computationally mapped isoform of Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Abtb2 PE=4 SV=1 CANONICAL=A0A9J7GAX2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAX2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAX2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756314", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756314", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 799, "end_pos": 801, "annotation": "n_glycosylation_sequon" }, { "start_pos": 875, "end_pos": 877, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAX2" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 844, "end_pos": 913, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 }, { "start_pos": 799, "end_pos": 801 }, { "start_pos": 875, "end_pos": 877 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GAZ0-1", "uniprot_ac": "A0A9J7GAZ0", "uniprot_id": "A0A9J7GAZ0_CRIGR", "mass": { "chemical_mass": 61187.0, "monoisotopic_mass": 61187.0 }, "refseq": { "ac": "XP_027281441", "name": "tripartite motif-containing protein 65 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281441" }, "gene_names": [ { "name": "Trim65", "type": "recommended", "evidence": [ { "id": "A0A9J7GAZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ] }, { "name": "Trim65", "type": "synonym", "evidence": [ { "id": "XP_027281441", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281441" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 65 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GAZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 65 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027281441", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281441" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281441" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trim65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GAZ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GAZ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12896", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12896", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19835", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19835", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758291", "url": "https://www.ncbi.nlm.nih.gov/gene/100758291", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048222", "url": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281441", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5B6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5B6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5B6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGTLVSSWAVPPAPFRSSRTGALGGASAMAAPLLEEDLVTCPICLSGYRDPVTLPCGHSFCGDCIQDSWRCCEKTCPECRRPFPEGAQLCRNVKLSSLLQALPRVLPPQPPATLPPPGPGAGRPAASCPRHGRPLEFFCRSEGLCVCSACTVHECRHHERALLDVERRGREDQLKARVVVTQQQATEAESQLQELQQQSSQIESSASTLASVVASRFSSLAQALEKRKALTLRSIEQAKKQVLGQALNEIQRLTGHLEALSQYDHSVQELLGQVDDHIFFQGLQQLSEPVESLGPPTALQWDEEQQLNNVNELLSPLCELLLEDKPSRVAGKAAQAGPVEALGPPPPVPSTMCPLRKKLWQNYRNLTFDPDTANQYLYLSHEDQQVTHRFQAQSPVRPGSFELWQVQCTQSFQTGQHYWEVRASEHSVTLGVTYPKLSRRKVGNHTDNIGRGPYSWGLCIQEDSIQAWHNGKAERLHGAPGLLLGIDLNLTSGCLNFYSLEPRTERLHTFYAVFSQPLFPVFWLLEGRTLTLCHQPEAKLPPGPREEASALC", "length": 553, "header": "tr|A0A9J7GAZ0-1|A0A9J7GAZ0_CRIGR Isoform 1 of Tripartite motif-containing protein 65 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trim65 PE=4 SV=1 CANONICAL=A0A9J7GAZ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GAZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0/entry#A0A9J7GAZ0-1", "sequence": { "sequence": "MLGTLVSSWAVPPAPFRSSRTGALGGASAMAAPLLEEDLVTCPICLSGYRDPVTLPCGHSFCGDCIQDSWRCCEKTCPECRRPFPEGAQLCRNVKLSSLLQALPRVLPPQPPATLPPPGPGAGRPAASCPRHGRPLEFFCRSEGLCVCSACTVHECRHHERALLDVERRGREDQLKARVVVTQQQATEAESQLQELQQQSSQIESSASTLASVVASRFSSLAQALEKRKALTLRSIEQAKKQVLGQALNEIQRLTGHLEALSQYDHSVQELLGQVDDHIFFQGLQQLSEPVESLGPPTALQWDEEQQLNNVNELLSPLCELLLEDKPSRVAGKAAQAGPVEALGPPPPVPSTMCPLRKKLWQNYRNLTFDPDTANQYLYLSHEDQQVTHRFQAQSPVRPGSFELWQVQCTQSFQTGQHYWEVRASEHSVTLGVTYPKLSRRKVGNHTDNIGRGPYSWGLCIQEDSIQAWHNGKAERLHGAPGLLLGIDLNLTSGCLNFYSLEPRTERLHTFYAVFSQPLFPVFWLLEGRTLTLCHQPEAKLPPGPREEASALC", "length": 553, "header": "tr|A0A9J7GAZ0-1|A0A9J7GAZ0_CRIGR Isoform 1 of Tripartite motif-containing protein 65 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trim65 PE=4 SV=1 CANONICAL=A0A9J7GAZ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0/entry#A0A9J7H5B6-1", "sequence": { "sequence": "MLGTLVSSWAVPPAPFRSSRTGALGGASAMAAPLLEEDLVTCPICLSGYRDPVTLPCGHSFCGDCIQDSWRCCEKTCPECRRPFPEGAQLCRNVKLSSLLQALPRVLPPQPPATLPPPGPGAGRPAASCPRHGRPLEFFCRSEGLCVCSACTVHECRHHERALLDVERRGREDQLKARVVVTQQQATEAESQLQELQQQSSQIESSASTLASVVASRFSSLAQALEKRKALTLRSIEQAKKQVLGQALNEIQRLTGHLEALSQYDHSVQELLGQVDDHIFFQGLQQLSEPVESLGPPTALQWDEEQQLNNVNELLSPLCELLLEDKPSRVAGKAAQAGPVDYRNLTFDPDTANQYLYLSHEDQQVTHRFQAQSPVRPGSFELWQVQCTQSFQTGQHYWEVRASEHSVTLGVTYPKLSRRKVGNHTDNIGRGPYSWGLCIQEDSIQAWHNGKAERLHGAPGLLLGIDLNLTSGCLNFYSLEPRTERLHTFYAVFSQPLFPVFWLLEGRTLTLCHQPEAKLPPGPREEASALC", "length": 531, "header": "tr|A0A9J7H5B6-1|A0A9J7H5B6_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 65 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trim65 PE=4 SV=1 CANONICAL=A0A9J7GAZ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758291", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758291", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "pmid": "" }, { "name": "positive regulation of autophagy", "id": "GO:0010508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GAZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 347, "end_pos": 540, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GAZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ0" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 81, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 366, "end_pos": 368 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GB95-1", "uniprot_ac": "A0A9J7GB95", "uniprot_id": "A0A9J7GB95_CRIGR", "mass": { "chemical_mass": 70530.0, "monoisotopic_mass": 70530.0 }, "refseq": { "ac": "XP_027281708", "name": "glomulin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281708" }, "gene_names": [ { "name": "Glmn", "type": "recommended", "evidence": [ { "id": "A0A9J7GB95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ] }, { "name": "Glmn", "type": "synonym", "evidence": [ { "id": "XP_027281708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281708" } ] } ], "protein_names": [ { "name": "Glomulin isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GB95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95/entry#names_and_taxonomy" } ] }, { "name": "glomulin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281708" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027281708.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281708" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Glmn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95", "locus": {} } ], "crossref": [ { "id": "A0A9J7GB95", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GB95", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762721", "url": "https://www.ncbi.nlm.nih.gov/gene/100762721", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762721", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762721", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLCPMEH", "url": "https://omabrowser.org/oma/group/TLCPMEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LCM2", "url": "https://www.orthodb.org/?gene=A0A8C2LCM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GB95", "url": "https://www.orthodb.org/?gene=A0A9J7GB95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15430:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15430:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08568", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08568", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281708", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LCM2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LCM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLCWSPPKAFSSGGSVISLTRLGHLLGMAVEELQCIIKRCQILEECDFKEEDFGLFQLAGQRCIDDGHVDQLLEIIQDEKNKTIIKSMGWNLVGPVVRCLLRNGEEDKREDCFLMFDLLLKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVLQKLPNNKAYSVGLALSTLWSQLSLLPVPYSEEQIQTDDYGLCQCCKALIEFIRPFVEEVIDNKENKENEKLKDELLKFCFKSLKCPLLTAQFLEQSEDVGNDPFRCFACEIIGFLSQIGHPVPKIILNHGRKKRTWDNLEFEEEDDKQLADSVASLTYLVFVQGIGIGQLPMVLSPSYLLQLNMEHIELFLQRTEQSIFSKGLELLENSLLRLEDSSLLYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLAMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEGFIIQNIKNQIDASFKKTYNKWFAGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTDLGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNSQVASTCKGVCSVTVGGEEIPSMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKTKSTSEENVGIK", "length": 623, "header": "tr|A0A9J7GB95-1|A0A9J7GB95_CRIGR Isoform 1 of Glomulin isoform X1 OS=Cricetulus griseus OX=10029 GN=Glmn PE=4 SV=1 CANONICAL=A0A9J7GB95-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LCM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95/entry#A0A8C2LCM2-1", "sequence": { "sequence": "MAVEELQCIIKRCQILEECDFKEEDFGLFQLAGQRCIDDGHVDQLLEIIQDEKNKTIIKSMGWNLVGPVVRCLLRNGEEDKREDCFLMFDLLLKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVLQKLPNNKAYSVGLALSTLWSQLSLLPVPYSEEQIQTDDYGLCQCCKALIEFIRPFVEEVIDNKENKENEKLKDELLKFCFKSLKCPLLTAQFLEQSEDVGNDPFRCFACEIIGFLSQIGHPVPKIILNHGRKKRTWDNLEFEEEDDKQLADSVASLTYLVFVQGIGIGQLPMVLSPSYLLQLNMEHIELFLQRTEQSIFSKGLELLENSLLRLEDSSLLYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLAMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEGFIIQNIKNQIDASFKKTYNKWFAGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTDLGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNSQVASTCKGVCSVTVGGEEIPSMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKTKSTSEENVGIK", "length": 596, "header": "tr|A0A8C2LCM2-1|A0A8C2LCM2_CRIGR Computationally mapped isoform of Glomulin isoform X3 OS=Cricetulus griseus OX=10029 GN=Glmn PE=4 SV=1 CANONICAL=A0A9J7GB95-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95/entry#A0A9J7GAZ2-1", "sequence": { "sequence": "MLCWSPPKAFSSGGSVISLTRLGHLLGMAVEELQCIIKRCQILEECDFKEEDFGLFQLAGQRCIDDGHVDQLLEIIQDEKNKTIIKSMGWNLVGPVVRCLLRNGEEDKREDCFLMFDLLLKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVLQKLPNNKAYSVGLALSTLWSQLSLLPVPYSEEQIQTDDYGLCQCCKALIEFIRPFVEEVIDNKENKENEKLKDELLKFCFKSLKCPLLTAQFLEQSEDVGNDPFRCFACEIIGFLSQIGHPVPKIILNHGRKKRTWDNLEFEEEDDKQLADSVASLTYLVFVQGIGIGQLPMVLSPSYLLQLNMEHIELFLQRTEQSIFSKGLELLENSLLRLEDSSLLYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLAMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEGFIIQNIKNQIDASFKKTYNKWFAGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTDLGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNSQASTCKGVCSVTVGGEEIPSMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKTKSTSEENVGIK", "length": 622, "header": "tr|A0A9J7GAZ2-1|A0A9J7GB95_CRIGR Computationally mapped isoform of Glomulin isoform X1 OS=Cricetulus griseus OX=10029 GN=Glmn PE=4 SV=1 CANONICAL=A0A9J7GB95-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95/entry#A0A9J7GB95-1", "sequence": { "sequence": "MLCWSPPKAFSSGGSVISLTRLGHLLGMAVEELQCIIKRCQILEECDFKEEDFGLFQLAGQRCIDDGHVDQLLEIIQDEKNKTIIKSMGWNLVGPVVRCLLRNGEEDKREDCFLMFDLLLKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVLQKLPNNKAYSVGLALSTLWSQLSLLPVPYSEEQIQTDDYGLCQCCKALIEFIRPFVEEVIDNKENKENEKLKDELLKFCFKSLKCPLLTAQFLEQSEDVGNDPFRCFACEIIGFLSQIGHPVPKIILNHGRKKRTWDNLEFEEEDDKQLADSVASLTYLVFVQGIGIGQLPMVLSPSYLLQLNMEHIELFLQRTEQSIFSKGLELLENSLLRLEDSSLLYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLAMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEGFIIQNIKNQIDASFKKTYNKWFAGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTDLGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNSQVASTCKGVCSVTVGGEEIPSMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKTKSTSEENVGIK", "length": 623, "header": "tr|A0A9J7GB95-1|A0A9J7GB95_CRIGR Isoform 1 of Glomulin isoform X1 OS=Cricetulus griseus OX=10029 GN=Glmn PE=4 SV=1 CANONICAL=A0A9J7GB95-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GAZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAZ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762721", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762721", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AC58GRH6-1", "protein_name": "Glomulin, FKBP associated protein a isoform X1", "gene_name": "glmna", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNKAFRSISMALDQLSDMVQRCQTVKDESFAPEDYDLFTAAGSTCIEQGDSAQVLSILVDEKNQNIVRCMGWNLLGPLVKMLLKKEDKTLPHCHAILLHLLEVCSPKELLVGLLEQVEEADSGSIAETITLLLKPLQTVLLRLGIRKASSVGMALSTLLSQVSRLPVPVTAEQEEDDVFGLCRCCSALLQFVKPFVEEIKEVVKDNNSISKDNELRVELLKFCMKSLSEPLLEVQLKDTDTLQRSPLRDFATEILIILSDIGESLPDLLSRNVLRRRKVPGFLEEEVRYPKESLACMSHLLFVDHIAVDIFPAVFSPIFVLQCNMEYIELLLSRTEENRLQKGLELYEKSLVRVEENSLPVDLLELKTFFSVPQNLVKVMTMCPDQTLRTKGLKVFQLSIDKFNTEAKYKFFRGMLKTSHHAGVEGYIIKNIKNQIDSSLKPGNSNDWFLGKHLLPLLRLVLCLPQGPETDLLQNLDRIMESLNLLRYMLIRDKEWDNETGIWTELYKIEDNYLKPMRTGLNMSKAHYEAELRSTKENRKIGLKEAKASVCSVTVGNEKLPNMTPETQIQVLQSALFTFDLIESVLARIEEIIEAKDRPQS", "length": 601 }, "evidence": [ { "id": "A0A9J7GB95", "url": "https://omabrowser.org/oma/group/A0A9J7GB95/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZKQ3-1", "protein_name": "Glomulin, FKBP associated protein", "gene_name": "Glmn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVEELQCIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKTMGWNLVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVIQKLPNNKAYSAGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCRALIEFTKPFVAEVASDKEDPANTKLKDELLKFCFKSLKCPLLTAQFLEQSEEVGNDPFRCFASEIIGFLSQIGYPVPQIILNHGRKKRTWDYLEFEEEEDRQLADSVAALTYLVFVQGIGTDQLPMVLSPSYLLQLNMEHIEVLLQRTEQSVYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKTGLAMLQLYIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSYKKTHNRWFAGAQLTSLLDLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLQPLHVGLNMSKAHYEAEIKNSQQNSQAASMCKSVCSVTVGGEEIPTMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKSKSTSEENAGMK", "length": 596 }, "evidence": [ { "id": "A0A9J7GB95", "url": "https://omabrowser.org/oma/group/A0A9J7GB95/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BA27-1", "protein_name": "Glomulin, FKBP associated protein", "gene_name": "GLMN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVEELQSIIKRCQILEEQDFKEEDFGLFQLAGQRCIDEGHIDQLLEIIQNEKNKVIVKNMGWNLVGPVVRSLLRNEKEDDKRKCHFLLLDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVIQKLRNNKAYSVGLALSTLWSQLSLLPVPYSKEQIQADDYGLCQCCKALIEFTKPFVEYVIDNKENSMENEKLKDEILKFCLKSLKCPLLTAQFLEQSEEAGDDPLKCFASEIIGFLSAIGYPFPKMIFNHGRKKKIWDYLEFEEEEDKQLSDSMASLAYLVFVQGISIDQLPMVLSPSYLLQFNMGHIEVLLQRTEESVFSKGLDLLENGLLRIEDNSLLHQYLEIKSFLTVPQGLVKVMTLCPIETLRKKGLAVLQLYINKLDPQGKYTLFRCLLSTSNHSGVEAFIIQNIKNQIDISLKKTQNKWFTGPQLISLLDLVLVLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEKDNQTGLWTELEKIENNFLKPLHTGLNMSKAHYEAEIKNSQEVQKSKDHCSLNVGREEIPNMPPEMQLKVLHSALFTFDLIESVLARVEELIETKTKSTSEENMG", "length": 592 }, "evidence": [ { "id": "A0A9J7GB95", "url": "https://omabrowser.org/oma/group/A0A9J7GB95/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BZM1-1", "protein_name": "Glomulin", "gene_name": "Glmn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVEELQSIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKSMGWNLVGPVVRCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVIQKLPNNKAYSVGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCKALIEFTKPFVEEVISDKENKENAKLKDELLKFCFKGLKCPLLTAQFLEQSEDVGNDPFRCFASEIIGFLSKIGHPVPQIILNHGRKKRTWDYLEFEEEEDKQLAESVASLTYLVFVQGIGIDQLPMVLSPSYLLQLNMEHIEVFLQRTEQSIYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLSMLQLFIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSFKKTYNKWFAGAQLISLLDLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQTGLWTELGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNNQVASMCKGVCSVTVGGEEIPSMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKSKSTSEENVGIK", "length": 596 }, "evidence": [ { "id": "A0A9J7GB95", "url": "https://omabrowser.org/oma/group/A0A9J7GB95/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92990-1", "protein_name": "Glomulin", "gene_name": "GLMN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVEELQSIIKRCQILEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQSILLLLQPLQTVIQKLHNKAYSIGLALSTLWNQLSLLPVPYSKEQIQMDDYGLCQCCKALIEFTKPFVEEVIDNKENSLENEKLKDELLKFCFKSLKCPLLTAQFFEQSEEGGNDPFRYFASEIIGFLSAIGHPFPKMIFNHGRKKRTWNYLEFEEEENKQLADSMASLAYLVFVQGIHIDQLPMVLSPLYLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDMSLKRTRNNKWFTGPQLISLLDLVLFLPEGAETDLLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTELGNIENNFLKPLHIGLNMSKAHYEAEIKNSQEAQKSKDLCSITVSGEEIPNMPPEMQLKVLHSALFTFDLIESVLARVEELIEIKTKSTSEENIGIK", "length": 594 }, "evidence": [ { "id": "A0A9J7GB95", "url": "https://omabrowser.org/oma/group/A0A9J7GB95/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "Cul4A-RING E3 ubiquitin ligase complex", "id": "GO:0031464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031464", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "Cul2-RING ubiquitin ligase complex", "id": "GO:0031462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ubiquitin-protein transferase inhibitor activity", "id": "GO:0055105", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055105", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "hepatocyte growth factor receptor binding", "id": "GO:0005171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005171", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "vasculogenesis", "id": "GO:0001570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001570", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "negative regulation of T cell proliferation", "id": "GO:0042130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042130", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "positive regulation of cytokine production", "id": "GO:0001819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001819", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "positive regulation of phosphorylation", "id": "GO:0042327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042327", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "epigenetic regulation of gene expression", "id": "GO:0040029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040029", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" }, { "name": "muscle cell differentiation", "id": "GO:0042692", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042692", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 435, "end_pos": 437 }, { "start_pos": 438, "end_pos": 440 }, { "start_pos": 515, "end_pos": 517 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0007218", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "neuropeptide hormone activity", "id": "GO:0005184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005184", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB1" } ], "pmid": "" }, { "name": "orexigenic neuropeptide QRFP receptor binding", "id": "GO:0031854", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031854", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GDP3-1", "uniprot_ac": "A0A9J7GDP3", "uniprot_id": "A0A9J7GDP3_CRIGR", "mass": { "chemical_mass": 53345.0, "monoisotopic_mass": 53345.0 }, "refseq": { "ac": "XP_027281518", "name": "cerebellar degeneration-related protein 2-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281518" }, "gene_names": [ { "name": "Cdr2l", "type": "recommended", "evidence": [ { "id": "A0A9J7GDP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3" } ] }, { "name": "Cdr2l", "type": "synonym", "evidence": [ { "id": "XP_027281518", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281518" } ] } ], "protein_names": [ { "name": "Cerebellar degeneration-related protein 2-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GDP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3/entry#names_and_taxonomy" } ] }, { "name": "cerebellar degeneration-related protein 2-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027281518", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281518" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281518" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdr2l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GDP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GDP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758231", "url": "https://www.ncbi.nlm.nih.gov/gene/100758231", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758231", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758231", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GDP3", "url": "https://www.orthodb.org/?gene=A0A9J7GDP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281518", "url": 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"MRRAAGMEDYSAEEEESWYDHQDLEQDLHLAAELGKTLLERNKELEESLQQMYSTNEEQVQEIEYLTKQLDTLRLVNEQHAKVYEQLDMTARDLELTNQRLVLESKAAQQKIHGLTETIERLQSQVEELQAQVEQLRGLEQLRVRREKRERRRTIHTFPCLKELCTSPRRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKDRAEREYTVVLQEYTELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLARDEHLAEALLAPLTQAPEADDPQPGSGDASNAQDGVSSPAASPSHAVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRRRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLLGGEESQGEGKTGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFARIQKTKADINATKVKTHSSK", "length": 466, "header": "tr|A0A9J7GDP3-1|A0A9J7GDP3_CRIGR Isoform 1 of Cerebellar degeneration-related protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdr2l PE=3 SV=1 CANONICAL=A0A9J7GDP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GBF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3/entry#A0A9J7GBF5-1", "sequence": { "sequence": "MRRAAGMEDYSAEEEESWYDHQDLEQDLHLAAELGKTLLERNKELEESLQQMYSTNEEQVQEIEYLTKQLDTLRLVNEQHAKVYEQLDMTARDLELTNQRLVLESKAAQQKIHGCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKDRAEREYTVVLQEYTELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLARDEHLAEALLAPLTQAPEADDPQPGSGDASNAQDGVSSPAASPSHAVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRRRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLLGGEESQGEGKTGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFARIQKTKADINATKVKTHSSK", "length": 410, "header": "tr|A0A9J7GBF5-1|A0A9J7GDP3_CRIGR Computationally mapped isoform of Cerebellar degeneration-related protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdr2l PE=3 SV=1 CANONICAL=A0A9J7GDP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3/entry#A0A9J7GDP3-1", "sequence": { "sequence": "MRRAAGMEDYSAEEEESWYDHQDLEQDLHLAAELGKTLLERNKELEESLQQMYSTNEEQVQEIEYLTKQLDTLRLVNEQHAKVYEQLDMTARDLELTNQRLVLESKAAQQKIHGLTETIERLQSQVEELQAQVEQLRGLEQLRVRREKRERRRTIHTFPCLKELCTSPRRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKDRAEREYTVVLQEYTELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLARDEHLAEALLAPLTQAPEADDPQPGSGDASNAQDGVSSPAASPSHAVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRRRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLLGGEESQGEGKTGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFARIQKTKADINATKVKTHSSK", "length": 466, "header": "tr|A0A9J7GDP3-1|A0A9J7GDP3_CRIGR Isoform 1 of Cerebellar degeneration-related protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdr2l PE=3 SV=1 CANONICAL=A0A9J7GDP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDP3/entry#A0A9J7GDR5-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279904", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279904" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836558", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GBL7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GBL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836558", "url": "https://www.ncbi.nlm.nih.gov/gene/113836558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836558", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31359:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31359:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027279904", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279904", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GBL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEARIPYRALTLLFCLLSCLLSSLQPVIANQVKANCDTMILFIIFLALLTLLCICGLMKCFCHKCRLPEQNLRSHHQTPPEAPTTAPLEIWVPTLDPPPPYDQVIMKPVEKPPPYSLRPEDPAGQMRDTDNTAI", "length": 135, "header": "tr|A0A9J7GBL7-1|A0A9J7GBL7_CRIGR Isoform 1 of Transmembrane protein 92-like OS=Cricetulus griseus OX=10029 GN=LOC113836558 PE=4 SV=1 CANONICAL=A0A9J7GBL7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GBL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7/entry#A0A9J7GBL7-1", "sequence": { "sequence": "MPEARIPYRALTLLFCLLSCLLSSLQPVIANQVKANCDTMILFIIFLALLTLLCICGLMKCFCHKCRLPEQNLRSHHQTPPEAPTTAPLEIWVPTLDPPPPYDQVIMKPVEKPPPYSLRPEDPAGQMRDTDNTAI", "length": 135, "header": "tr|A0A9J7GBL7-1|A0A9J7GBL7_CRIGR Isoform 1 of Transmembrane protein 92-like OS=Cricetulus griseus OX=10029 GN=LOC113836558 PE=4 SV=1 CANONICAL=A0A9J7GBL7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 85, "start_aa": "Thr", "end_pos": 85, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836558", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 85 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GBX3-1", "uniprot_ac": "A0A9J7GBX3", "uniprot_id": "A0A9J7GBX3_CRIGR", "mass": { "chemical_mass": 88538.0, "monoisotopic_mass": 88538.0 }, "refseq": { "ac": "XP_003495714", "name": "protein HID1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495714" }, "gene_names": [ { "name": "Hid1", "type": "recommended", "evidence": [ { "id": "A0A9J7GBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ] }, { "name": "Hid1", "type": "synonym", "evidence": [ { "id": "XP_003495714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495714" } ] } ], "protein_names": [ { "name": "Protein HID1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3/entry#names_and_taxonomy" } ] }, { "name": "protein HID1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495714" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495714" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hid1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GBX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GBX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772114", "url": "https://www.ncbi.nlm.nih.gov/gene/100772114", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772114", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772114", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFEDDKW", "url": "https://omabrowser.org/oma/group/IFEDDKW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MN65", "url": "https://www.orthodb.org/?gene=A0A8C2MN65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GBX3", "url": "https://www.orthodb.org/?gene=A0A9J7GBX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GBY5", "url": "https://www.orthodb.org/?gene=A0A9J7GBY5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21575", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21575", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21575:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21575:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12722", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12722", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495714", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MN65", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MN65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MN65-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MN65-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHSEKERQVVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGQGEEDDETARPLAESLLLAIADLLFCPDFTVQSHRRNNVDSAEDVRSLDSCEYIWEAGVGFAHSPQPNSIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTTCTVDGTTTGTAMDDAEPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIVTSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRGVFHQLANLPTDPPSIHKALQRRRKTPEPLSRAGSQEGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQSSSAEGSPSEGEPSQTWREQRRLSSASASGQWNPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAVWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 788, "header": "tr|A0A9J7GBX3-1|A0A9J7GBX3_CRIGR Isoform 1 of Protein HID1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Hid1 PE=4 SV=1 CANONICAL=A0A9J7GBX3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MN65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3/entry#A0A8C2MN65-1", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHSEKERQVVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGGEEDDETARPLAESLLLAIADLLFCPDFTVQSHRRNNVDSAEDVRSLDSCEYIWEAGVGFAHSPQPNSIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTTCTVDGTTTGTAMDDAEPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIVTSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRGVFHQLANLPTDPPSIHKALQRRRKTPEPLSRAGSQEGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQSSSAEGSPSEGEPSQTWREQRRLSSASASGQWNPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAVWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 787, "header": "tr|A0A8C2MN65-1|A0A8C2MN65_CRIGR Computationally mapped isoform of Protein HID1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hid1 PE=4 SV=1 CANONICAL=A0A9J7GBX3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3/entry#A0A9J7GBX3-1", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHSEKERQVVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGQGEEDDETARPLAESLLLAIADLLFCPDFTVQSHRRNNVDSAEDVRSLDSCEYIWEAGVGFAHSPQPNSIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTTCTVDGTTTGTAMDDAEPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIVTSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRGVFHQLANLPTDPPSIHKALQRRRKTPEPLSRAGSQEGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQSSSAEGSPSEGEPSQTWREQRRLSSASASGQWNPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAVWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 788, "header": "tr|A0A9J7GBX3-1|A0A9J7GBX3_CRIGR Isoform 1 of Protein HID1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Hid1 PE=4 SV=1 CANONICAL=A0A9J7GBX3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3/entry#A0A9J7GBY5-1", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKQGEEDDETARPLAESLLLAIADLLFCPDFTVQSHRRNNVDSAEDVRSLDSCEYIWEAGVGFAHSPQPNSIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTTCTVDGTTTGTAMDDAEPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIVTSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRGVFHQLANLPTDPPSIHKALQRRRKTPEPLSRAGSQEGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQSSSAEGSPSEGEPSQTWREQRRLSSASASGQWNPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAVWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 731, "header": "tr|A0A9J7GBY5-1|A0A9J7GBY5_CRIGR Computationally mapped isoform of Protein HID1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Hid1 PE=4 SV=1 CANONICAL=A0A9J7GBX3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 620, "start_aa": "Thr", "end_pos": 620, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr620", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772114", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772114", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BQ79-1", "protein_name": "HID1 domain containing", "gene_name": "HID1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPCIFEDPDWRGFFWSTVPGAGRGGQGEDDDENARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDIHSLDSCEYIWEAGVGFAHSPQPSYIHDMNRMELLKLLLTCFSEAMYLPPAADCGNTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSTTSASPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVAANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRSVFHQLANLPTDPPAIHKALQRRRRAPEPLSRTGSQEGASMEGSRPAVPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPAPQQSSAEGSPATEEPSQAWREQRRPSSASASGQWSPTSEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDVKLFEIQRV", "length": 788 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V1AJW8-1", "protein_name": "HID1 domain containing", "gene_name": "HID1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHTEKERQIVLNCSRLLTRILPYIFEDPDWRGFFWSTVPGAGRGGGDEDDENARPLAESLLLAVADLLFCPDFTVQSHRRSTVDTAEDIHSIDSCEYIWEAGVGFAHSPQPNYIHDLNRTELLKLLLTCFSEAMYLPPSSDSSNTNPWVQFFCSTENRHALPLFTSLLNVVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDYDSSTSSSPTVDGTTTGTAMDDVDPPGPDNLFVNYLSRIHREEDFQFILKGVARLLSNPLVQTYLPNSAKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIIVFHKIITSGHQRLQPLFDCLLTIIVNVSPYLKSLSMVAANKLLHLLEAFSTTWFLFSAVQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAVIRKRNVFHQLANLPTDSQSIQKGLQRKKKSPEPISRTNSQDGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTMRSLEPESLQPLPEGNLPSAASDGEPWSGEVSHPQRDRRRLSSASSSGQWSPTPDWVMSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 796 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A0C3-1", "protein_name": "Protein HID1", "gene_name": "Hid1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDNAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAEGGCHSEKEKQVVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGQGEEEDENARPLAESLLLAIADLLFCPDFTVQNHRRNDVDSAEDVHSLDSCEYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTSPTVDGTTTGTVMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRGVFHQLANLPTDPPSIHKALQRRRRTPEPLSRAGSQEGASMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQQNSAEGSPSEGEPNQTWREQRRLSNASASGQWSPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 788 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0E9B5-1", "protein_name": "Protein HID1", "gene_name": "Dmc1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFWQGHQTTLEDVFALVTSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCRTQAEQQCVLNCVRLLVRCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLLNATCDLLFCPDFTVTATRRAGPEKAEELANIDSCEYIWEAGVGFAQSPPHNAHMERRRTELLKLLLTCFSEPMYRSPQQSEEPNKWIAYFTSADNRHALPLFTSFLNTVCSYDPVGFGVPYNHLLFADTTEPLVEACLQLLIVTLDHDMVVQQQLTQPGQASYDEGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLNNPLVQNYLPNSTKRLHCHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPILYHLNYSRADQSRVGLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIPVFTGTHADLLITVFHKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVASVKMLHLLEAFSTPWFLLSAPSNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRHVFHAMANLPTDMAGIAKCLSGRKTGGKFNLPRVPQRRTPAVSQELPSAHVPEEYNEEDEDEDEEEIINEEPKAEEDLESETESHERSQAGELQSDVLTAQPAEPGTLKTSLLDTPGITQMTEREQAHPNDKPQVEDSTDIVPYDRSAASTPTDERKSTSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVSWRSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQANAGTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQRV", "length": 837 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q54JJ6-1", "protein_name": "Protein HID1", "gene_name": "hid1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGTGSSREQHLNSFNTLQKETVPFSSDLWKTILSQNLEDDSLYLENLKKLKNERPENLATFIKKLVNQLVLVKGLQRETNTPGDFQLTSISLSYLSRILPIVFESGDDFADKVFWLNEGIEPLSHPSAKISTPPSITTTKTTEIIEEQEKKDQENKQVEENKENEEKKDEEKKDEEKKDEEKKDEDKKENKTTTTTTTTNTTNNTNNNNNSDESSFDTTPLAVKLMDSLLDLLFFPGFTVTESLGLKSPKEASPDAIPVLFSWAGGFGVDSVPTVHNKQFWINRLSVLQCLITCLSEQLYVPQDSVSTFKSKWLDWITHTQEYYTEALLFSLINTFATFDPIGWGIPYNHLMYSDDHEICSKLSIQILNVLLTYDPIENNDQQPQQQHHHHQQQHHQQQQQQQQSTIECRNKFIQYIKTLKRVRDFKFFFNAFERIMNVPLIASHTKLPNSTKKIELHQDLTYTMWLFLSYNHDFLRSIVNYENSPEFLIPLLQYMDEGRKSQTTHGIVQIGTFILLLLSGERDFSISLNKPFVGRIHIDIQQPQVYSDFVITVMYRLLVDTPDRLESIYECVLTILSNLSPYMKNLSMVTCVKLMKLFEYLSTPRFLFATNHNYRYVGFLLESLNNLLQHQYESNTRLIYAILRCQNQFSKLAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPSTLSNEKSDKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESPKLGGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNILKVITHLSPQIQGLCTGSGSDEQKIMDYLKMSTIVGIFHNPGPIMTRRYHSNAITKSWFIAYMWCIIYLENHSPPLFLHTNIKLFQVKQ", "length": 905 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8IV36-1", "protein_name": "Protein HID1", "gene_name": "HID1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSCEYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSASPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDVKLFEIQRV", "length": 788 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R1F6-1", "protein_name": "Protein HID1", "gene_name": "Hid1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSADSKLNFRKAVIQLTTKTQPVEATDNAFWDQFWADTATSVQDVFALVPAAEIRAVREESPSNLATLCYKAVEKLVQGAEGGCHSEKEKQVVLNCSRLLTRVLPYIFEDPDWRGFFWSTVPGAGRGGQGEEEDENARPLAESLLLAIADLLFCPDFTVQNHRRNDVDSAEDVHSLDSCEYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPSPESGSTNPWVQFFCSTENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSATSTSPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILYFLNDARADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSVRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPLFDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSASQNHHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRAVFHQLANLPTDPPSIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPESQQSSAENSPSDGESSQTWREQRRLSNASASGQWSPTSDWILSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPIWYDTDVKLFEIQRV", "length": 788 }, "evidence": [ { "id": "A0A9J7GBX3", "url": "https://omabrowser.org/oma/group/A0A9J7GBX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" }, { "name": "Golgi medial cisterna", "id": "GO:0005797", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005797", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" }, { "name": "Golgi trans cisterna", "id": "GO:0000138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000138", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" }, { "name": "cytoplasmic microtubule", "id": "GO:0005881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005881", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" }, { "name": "cytoplasmic side of Golgi membrane", "id": "GO:0098548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098548", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 620 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 360, "end_pos": 362 }, { "start_pos": 490, "end_pos": 492 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281675" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GC42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836721", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42", "locus": {} } ], "crossref": [ { "id": "A0A9J7GC42", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GC42", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836721", "url": "https://www.ncbi.nlm.nih.gov/gene/113836721", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836721", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836721", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027281675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281675", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GC42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAMQKEPRCKAPRGGDGTRTSWSKAATRKPKGSQETGVTILQTPDTRPFQPPRTTKSAARKREGSPHGAAELERHKARWLTAAARFQLGLAEDRGTWPRRRPRPAPARPPPRLPAQPRPPPSPARVRVRRRRVPWGGAAPPQPDGSGEQSGGGGANFFRCLLRAPSGDYLQRRAQSLWRKSTRASVRVPVPEQELSEASRTSQDPARPLARAPSSRSPSLPSRLQAGGRGAGARGRGRAGPAGSCSSPPRRGGSGCLGEGGDDPEARRPCQVPRGASSAQPPGW", "length": 285, "header": "tr|A0A9J7GC42-1|A0A9J7GC42_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113836721 PE=4 SV=1 CANONICAL=A0A9J7GC42-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GC42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42/entry#A0A9J7GC42-1", "sequence": { "sequence": "MNAMQKEPRCKAPRGGDGTRTSWSKAATRKPKGSQETGVTILQTPDTRPFQPPRTTKSAARKREGSPHGAAELERHKARWLTAAARFQLGLAEDRGTWPRRRPRPAPARPPPRLPAQPRPPPSPARVRVRRRRVPWGGAAPPQPDGSGEQSGGGGANFFRCLLRAPSGDYLQRRAQSLWRKSTRASVRVPVPEQELSEASRTSQDPARPLARAPSSRSPSLPSRLQAGGRGAGARGRGRAGPAGSCSSPPRRGGSGCLGEGGDDPEARRPCQVPRGASSAQPPGW", "length": 285, "header": "tr|A0A9J7GC42-1|A0A9J7GC42_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113836721 PE=4 SV=1 CANONICAL=A0A9J7GC42-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GC42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GC42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC42" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836721", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836721", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GC69-1", "uniprot_ac": "A0A9J7GC69", "uniprot_id": "A0A9J7GC69_CRIGR", "mass": { "chemical_mass": 121806.0, "monoisotopic_mass": 121806.0 }, "refseq": { "ac": "XP_027282080", "name": "ankyrin repeat and fibronectin type-III domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282080" }, "gene_names": [ { "name": "Ankfn1", "type": "recommended", "evidence": [ { "id": "A0A9J7GC69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69" } ] }, { "name": "Ankfn1", "type": "synonym", "evidence": [ { "id": "XP_027282080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282080" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and fibronectin type-III domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "A0A9J7GC69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and fibronectin type-III domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_027282080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282080" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282080" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GC69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankfn1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69", "locus": {} } ], "crossref": [ { "id": "A0A9J7GC69", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GC69", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764232", "url": "https://www.ncbi.nlm.nih.gov/gene/100764232", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764232", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764232", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GC69", "url": "https://www.orthodb.org/?gene=A0A9J7GC69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21437:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21437:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GC69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1077, "header": "tr|A0A9J7GC69-1|A0A9J7GC69_CRIGR Isoform 1 of Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Ankfn1 PE=4 SV=1 CANONICAL=A0A9J7GC69-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1046, "start_aa": "Thr", "end_pos": 1046, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1046", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03348", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03348", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279290", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MDY8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRTPKAGPTLAEAGRGERAGWGRARGRGPGGCGAGVGVRRLGWPSVWAEGRGRPGRHCLQFRRPAPASLPDPGFRRNGRRTRHAEVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILILGTIVSCIMMTDGIQTQLKKIPGFCEGGFQIKVPDIKAEKDCDVLVGFKAVYRINFAVAIFFFAFCLLMLKVKTSKDPRAAIHNGFWFFKIAAIIGIMVGSFYIPGGHFTSVWFVAGMMGATFFIFIQLVLLVDMAHSWNESWVNRMEEGNPRLWYAALLSFTSLFYILSIIFAVLLYIFYTRPDGCTENKVFISLNLIFCVAVSIVSILSKIQEHQPRSGLLQSSIITLYTLYLTWSAMTNEPDRSCNPSLRSIITHLTSPTVSPANSTTLAPASTPSSQNGHSMNLDDFGGLTIFVICLIYSSIRTSSNSQVNKLTLSGSDSVILGDTTNGASDEEDGQPRRAVDNEKEGVQYSYSFFHWMLCCASLYIMMTITSWYSPDAKFQKVSSNWLAVWVKMGSSWVCLLLYLWTLVAPLILTGRDFS", "length": 546, "header": "tr|A0A9J7GCC1-1|A0A9J7GCC1_CRIGR Isoform 1 of Serine incorporator 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Serinc3 PE=3 SV=1 CANONICAL=A0A9J7GCC1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1/entry#A0A8C2MDY8-1", "sequence": { "sequence": "MGAVLGVFSLASWVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILILGTIVSCIMMTDGIQTQLKKIPGFCEGGFQIKVPDIKAEKDCDVLVGFKAVYRINFAVAIFFFAFCLLMLKVKTSKDPRAAIHNGFWFFKIAAIIGIMVGSFYIPGGHFTSVWFVAGMMGATFFIFIQLVLLVDMAHSWNESWVNRMEEGNPRLWYAALLSFTSLFYILSIIFAVLLYIFYTRPDGCTENKVFISLNLIFCVAVSIVSILSKIQEHQPRSGLLQSSIITLYTLYLTWSAMTNEPDRSCNPSLRSIITHLTSPTVSPANSTTLAPASTPSSQNGHSMNLDDFGGLTIFVICLIYSSIRTSSNSQVNKLTLSGSDSVILGDTTNGASDEEDGQPRRAVDNEKEGVQYSYSFFHWMLCCASLYIMMTITSWYSPDAKFQKVSSNWLAVWVKMGSSWVCLLLYLWTLVAPLILTGRDFS", "length": 472, "header": "tr|A0A8C2MDY8-1|A0A8C2MDY8_CRIGR Computationally mapped isoform of Serine incorporator 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Serinc3 PE=3 SV=1 CANONICAL=A0A9J7GCC1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1/entry#A0A9J7GCC1-1", "sequence": { "sequence": "MAVRTPKAGPTLAEAGRGERAGWGRARGRGPGGCGAGVGVRRLGWPSVWAEGRGRPGRHCLQFRRPAPASLPDPGFRRNGRRTRHAEVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILILGTIVSCIMMTDGIQTQLKKIPGFCEGGFQIKVPDIKAEKDCDVLVGFKAVYRINFAVAIFFFAFCLLMLKVKTSKDPRAAIHNGFWFFKIAAIIGIMVGSFYIPGGHFTSVWFVAGMMGATFFIFIQLVLLVDMAHSWNESWVNRMEEGNPRLWYAALLSFTSLFYILSIIFAVLLYIFYTRPDGCTENKVFISLNLIFCVAVSIVSILSKIQEHQPRSGLLQSSIITLYTLYLTWSAMTNEPDRSCNPSLRSIITHLTSPTVSPANSTTLAPASTPSSQNGHSMNLDDFGGLTIFVICLIYSSIRTSSNSQVNKLTLSGSDSVILGDTTNGASDEEDGQPRRAVDNEKEGVQYSYSFFHWMLCCASLYIMMTITSWYSPDAKFQKVSSNWLAVWVKMGSSWVCLLLYLWTLVAPLILTGRDFS", "length": 546, "header": "tr|A0A9J7GCC1-1|A0A9J7GCC1_CRIGR Isoform 1 of Serine incorporator 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Serinc3 PE=3 SV=1 CANONICAL=A0A9J7GCC1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 398, "start_aa": "Thr", "end_pos": 398, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr398", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755676", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755676", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4FUZ5-1", "protein_name": "Serine incorporator 3", "gene_name": "SERINC3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGAVLGVFSLASWVPCLCGGASCLLCSCCPNSKNSTLTRLIYAFILFLGTIVCCIMFHEGMETQLKKIPGFCDEGLSTRITDIMDKECDVLVRYKAVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDGCTENKFFISFNLILCVVISVLSIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPGLLSIITHMTSSTLAPANTTAPAPTPAVPLQSGPSLNKENFIGLLVFVLSLSYSSIRNSSNSQVSKLTLSGSDSVILRDTAANGASDEEDGRPRRAVDNEREGVQYNYSMFHLMLCSASLYIMMTLTNWYSPDANFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTNRDFS", "length": 472 }, "evidence": [ { "id": "A0A9J7GCC1", "url": "https://omabrowser.org/oma/group/A0A9J7GCC1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13530-1", "protein_name": "Serine incorporator 3", "gene_name": "SERINC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAVLGVFSLASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDFS", "length": 473 }, "evidence": [ { "id": "A0A9J7GCC1", "url": "https://omabrowser.org/oma/group/A0A9J7GCC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZI9-1", "protein_name": "Serine incorporator 3", "gene_name": "Serinc3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAVLGVFSLASWVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILFLGTIVSCIMMTEGIQTQLKKIPGFCEGGFQIKMVDTKAEKDCDVLVGFKAVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYTKPDDCTENKVFISLNLIFCVAVSIVSILPKVQEHQPRSGLLQSSIITLYTLYLTWSAMTNEPERSCNPSLMSIITHLTSPTVSPANSTTLAPAYAPPSQSGHFMNLDDIWGLIIFVFCLIYSSFRTSSNSQVNKLTLSGSDSVILGDTTNGANDEEDGQPRRAVDNEKEGVQYSYSFFHLMLCCASLYIMMTITSWYSPDAKFQKVSSKWLAVWFKMGSSWLCLLLYLWTLVAPLVLTGRDFS", "length": 472 }, "evidence": [ { "id": "A0A9J7GCC1", "url": "https://omabrowser.org/oma/group/A0A9J7GCC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phospholipid scramblase activity", "id": "GO:0017128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017128", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 398 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 389, "end_pos": 391 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GCC2-1", "uniprot_ac": "A0A9J7GCC2", "uniprot_id": "A0A9J7GCC2_CRIGR", "mass": { "chemical_mass": 96729.0, "monoisotopic_mass": 96729.0 }, "refseq": { "ac": "XP_027281880", "name": "tetratricopeptide repeat protein 27 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281880" }, "gene_names": [ { "name": "Ttc27", "type": "recommended", "evidence": [ { "id": "A0A9J7GCC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC2" } ] }, { "name": "Ttc27", "type": "synonym", "evidence": [ { "id": "XP_027281880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281880" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 27", "type": "recommended", "evidence": [ { "id": "A0A9J7GCC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC2/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 27 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281880" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281880" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GCC2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GCC2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762808", "url": "https://www.ncbi.nlm.nih.gov/gene/100762808", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762808", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762808", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GCC2", "url": "https://www.orthodb.org/?gene=A0A9J7GCC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16193:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16193:SF0", 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"MPGVMWTPELALLRGFSSEAERLLWKQEGICGSDIGVFLDLLLEGSYEAMFLHSVTQNILNSTMMAEEKIDSYLEKQIVNFLDCSSDLEETERQQLVFLLGVSSLQLFVQGNWTGPLVDLHPQDFLPPVLLEQFSEVKGLDAVILGLLILDGESIYSLTSKPILLLIARIILVNIRHKLTALQSLPWWTLRYVNIHQQLLEERSPQLFALAENCIDEVMKVENLFEGDSGRLLAIQFHLECAHVFLYYYEYKEAKDQFSTAKDISKLQVDLTGALGKRTRFQENFVAQLILDVRREEDIPSRSEFSPAPTPQEYLTKNLELNDDTVLNEIKLADSEQFQMPDLCAEELAVILGVCTNFQKNNPVHKLTEEELLAFTSCLLSQPKFWAIQTSALILRTKLERGSTRRVERAMRQTQALADQFEDKSTSVLERLKIFYCCPVPPHWAIQRQLAGLLFELGCSTSALQIFEKLEMWEDVTICYERAGQHGKAEEILRRELEKKETPSLYCLLGDVLQDHSCYDKAWELSRHRSARAQRSKALLHLRNKEFRKCVECFERSVKINPMQLGVWFSLGCAYLALEDYMGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDTQVLKILVRAVVNGVTDRSGDIASSLKGKLQELFGRVTSRVTNDGEIWRLYAQVHGNGRSEKPEENEKAFQCLLKAYKCDTQSNCWEKDATTFKEVVQRAIGLAHVAIKCSESKSSPQEAVQALSSVRLNLQGLLSKVKQNFTDVATGEVFGDLTNEITAMAALLAELQDLSNRLRNQY", "length": 847, "header": "tr|A0A9J7GCC2-1|A0A9J7GCC2_CRIGR Isoform 1 of Tetratricopeptide repeat protein 27 OS=Cricetulus griseus OX=10029 GN=Ttc27 PE=3 SV=1 CANONICAL=A0A9J7GCC2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCC2/entry#A0A9J7GCC2-1", "sequence": { "sequence": 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PE=3 SV=1 CANONICAL=A0A9J7GCC2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 310, "start_aa": "Thr", "end_pos": 310, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr310", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 310 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 604, "end_pos": 606 }, { "start_pos": 61, "end_pos": 63 }, { "start_pos": 809, "end_pos": 811 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GCD5-1", "uniprot_ac": "A0A9J7GCD5", "uniprot_id": "A0A9J7GCD5_CRIGR", "mass": { "chemical_mass": 30081.0, "monoisotopic_mass": 30081.0 }, "refseq": { "ac": "XP_003514172", "name": "isoamyl acetate-hydrolyzing esterase 1 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514172" }, "gene_names": [ { "name": "Iah1", "type": "recommended", "evidence": [ { "id": "A0A9J7GCD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5" } ] }, { "name": "Iah1", "type": "synonym", "evidence": [ { "id": "XP_003514172", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514172" } ] } ], "protein_names": [ { "name": "Isoamyl acetate-hydrolyzing esterase 1 homolog", "type": "recommended", "evidence": [ { "id": "A0A9J7GCD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5/entry#names_and_taxonomy" } ] }, { "name": "isoamyl acetate-hydrolyzing esterase 1 homolog", "type": "synonym", "evidence": [ { "id": "XP_003514172", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514172" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616360.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003514172.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514172" } ] }, { "annotation": "Probable lipase.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5#function" }, { "database": "UniProtKB", "id": "ARBA00024673", "url": "https://www.uniprot.org/uniprotkb/ARBA00024673#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iah1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GCD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GCD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01838", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01838", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758521", "url": "https://www.ncbi.nlm.nih.gov/gene/100758521", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758521", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758521", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GCD5", "url": "https://www.orthodb.org/?gene=A0A9J7GCD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14209", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14209", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14209:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14209:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00657", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00657", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514172", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPPPQKHPHPAQTGCSERATMALCERAASGSSLLWPRVVLFGDSITQFSFQPGGWGALLADRLVRKCDVLNRGFSGYNTRWAKIILPRLISKGSGMENPVAVTVFFGANDATLKDENPKQHVPLDEYSANLRAMVQYLRSVDILEERVILITPPPLGEAAWEKECILKGCKLNRLNSIVGEYANACLQVARDCGTNVLDLWTLMQKDNQDFSSYLSDGLHLSPKGNEFLFSNLWPLLDKKVSSLPWLLPYWNDVEEAKPERSLLGDGDH", "length": 270, "header": "tr|A0A9J7GCD5-1|A0A9J7GCD5_CRIGR Isoform 1 of Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Cricetulus griseus OX=10029 GN=Iah1 PE=3 SV=1 CANONICAL=A0A9J7GCD5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCD5/entry#A0A9J7GCD5-1", "sequence": { "sequence": "MSPPPQKHPHPAQTGCSERATMALCERAASGSSLLWPRVVLFGDSITQFSFQPGGWGALLADRLVRKCDVLNRGFSGYNTRWAKIILPRLISKGSGMENPVAVTVFFGANDATLKDENPKQHVPLDEYSANLRAMVQYLRSVDILEERVILITPPPLGEAAWEKECILKGCKLNRLNSIVGEYANACLQVARDCGTNVLDLWTLMQKDNQDFSSYLSDGLHLSPKGNEFLFSNLWPLLDKKVSSLPWLLPYWNDVEEAKPERSLLGDGDH", "length": 270, "header": "tr|A0A9J7GCD5-1|A0A9J7GCD5_CRIGR Isoform 1 of Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Cricetulus griseus OX=10029 GN=Iah1 PE=3 SV=1 CANONICAL=A0A9J7GCD5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 153, "start_aa": "Thr", "end_pos": 153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MLVPTGLLALVLLWVQAGMTSGKIADSHTRQEASCMVACKETAGPHLPVGTRYTYRFSSNTSTSLRGAPLETSGLGLQGLAILEVLGPCQMTLWLPDFKVTSVLGSKVKVLKESESLSAVLGRNPLGFIFSAGQVLHLCPHRSEPRWALNVKRSVLSLVQSCPGVHESKTFEEVDILGRCPTTYQSQGDLLLKTKDLSLCSLHTAHSSLNTQPLPGMASLASSFSCQQSFQAGVLHKAACKELHTAGPLFQKARAAHTLVLSSITLLNMTARDPAITDTDYKDVSPSSLQYEWEETLSQATVDMAAALVKKLCVAQPTSFEATEIFLMLVSELQGLSVDELTAVWHLSSFKCHDDRHPLVDALPSCGTQNCVGLMKQLILAGEVEADQAEAWLWSLAFIPEPTDAMVHTLLPLLQSPEASPGAFLGISALVHNLCAALDGHCQQLPGVGSLVKILGEALGVNCSFPEPVDAGQLQLVLKAIGNAGLAAAALAPVLSTCASLRGSSPEIRLAAIQAFRRIPCFADRSVLSRLYQAPEEDTELRINAYLALMRCPSEEVFAQVQHTQATERSTQVGSFVWSHILQLLETDDPLKRDLRDSLPEDILSQQFQVETWKHSSYSDVTFHSTSGSLGGNLERTLLFCPRSFLPCSATVNLTVHVAGWAFNLLELGLQLENAEDIIHSVLGSKSFWRQEGKKEAEPGNTGPEPGLDGSDCAGERSRRMKNLQEKVAHRSRARQTPSCQLSVKVFGHELSFLDCGPLGGHRRRWSLPLVELAIKLLKGQEVQVTRRLSLAVGELSFPTMSGIPARLTLHALATVSIHAQAVADFQQLSDFSLSGHIKPSALLQVSAQMGTEGTLGQAGLRWLTRVRGTASLDGGIQARKGQDLKVHLNAPEDSVELLSFSSRLYLVTGDSVKNLSEGHSFSESQSCTQEKVSQAWGWQLCTNVAWPGPGQPSLLSAPVFMDLILKKQDPGLQLYLLEAAYTLHFQKDSWLPEEATAHLFMGTPQSEVARDVGVDISYSVPQRKCRLKLLHPQKKIQLDGKMEVLKSMHMGHLELVLDDRDVYYIKGHSDLQPESGNKTQRFEAQVEAKLVTAGRPIVLDGNITWQTGSSLSISASLRRTLNDWAHGTVLLEKKAEAGLQSAILSIQLQVPGVVELHIQGLLEQHGPVGNSTLRIKYGLLGHKRHVAHECSTHQRLRMENGPKDTHELELAHEFHCTQLPIISHKVQLQHKQGLDHLRWQLEASYGEQWAASSNKRFLRIRQTFKNDSGPALRNYFLELALQVPERQVDCLTQLYHLSLRQPHIKSSTYLKVLFNGQLPFVAGLHWKDTSKAALWRWEGALNLDSPWLTVSAAHRLNWPHWAMFQAVSELTLAKAWTLKDLVISMTCRSQDHDREVKIQVYTEATTYLWVSMVTTLMPGLFHSRSELESAWSTAVQSEIHAENSQDRKVLHCWLKSLRRELNFTAAYKHTKKPPKTQVLLTVLGTSVPGQPRGLQLEGELEQLQRGKTLYRKRGTLLLRHPWHLLVPQSLLLQGTFMVDKQRQHHSLETKAVLNSQEEILHTVVLSRQAGHPYICTGLTHPFNDKTIPRSLEGCLVAWNLSNSKNSELKATLKVNQKVILYLKGLHQDSSQHGGIQHSVALEATHSSQTLHLNGGFDLTRRRRQGTFDFSTDVQASINHNATSQVSVQLNKSSSHLAFSLQFQPLDGLAFPPSLQVQAATGCHKERRVDVSLSVRVSGRELLLLEADTSKQRRRSRRGWNMRASLHQAVFSTPRALQLQLSSMVTPARVQMFSKVLVDQDSAQLLLKTSEGRRGGWVLSLWSLAQHSVAGWTKVPRVLSLKSMLKQKMAFREGSVMVATDSAMLSFLLRDKYEETGNGSLHSMTCTITQNYSQALPAELQLRGRQQTYTGALGGQASIHGDLISLALDGTCTWDLGHHQFSDNLTHNLGPLGDAGPASNSGLQVPSAQESSNRSAQMELWSANCHLNASLDPSSPTIPSHRHRAVPFSIYGHGHIQVSVDIRDGAASFEHSTYISTGPLSINCSVNYWAHEGRLELWGHSQHDSEVLLQAGLPDEANLQAELQIQETQTWAHVVLHGRNSKVSVDVTALLTWLPNGTLEATVNTSHTVHAFQRLGLPFSSQLLFRELWTTEDMSSSLQITCDTQDILSLHVHGQNHANSKELLLWGGHHLSSLLDCCPRSVSATAKLQYSKDETQGTFVLEMEERRFHVSTSLLAAKDDLASVILLQQTFLQLSTFPTELALRTLFQRTQGTHILYHVVQWDGREAALNGSLSSALSELSGNVRLQVELSHQLSLSLPHHCSLHLSSEHSRDKHHGDLAVAWDNKDQVQQSRDRSSPVTLEVTWAERSSMNSVAWDGCLAASLGQLQGTWGLGPLQACGALTQTPVMFSEQLDLSWGRHRLQQNVTYEKRQLPQWDKVHAEVTLEHILSAPCAKHSFQGTVETDYMHKLRHTLHLGLCNLPRALSFSGEHSLDQGALLLRSQYHLGLAPEPDQGLHFSLTLYNHSRPNAPDFSGQLELQGPRAQQLLLLGRITTSASQSLVQLEGSMDKDETLRLLVSWALSCLRASAAHVEAPGSREESVMLQACTHRRAVEVEALLQKSGQHAQPLGHLTLRAVNQSLLLVAHGCHGALLSYMESRMTAIGSQVRAQLEEKTQSLDDYVSRFRNLVQPVGTLDGAAECLVQLTQVGLGAVQAGGQVVATLWARGQAKHVLTGHLPLYLEHLQAEMAQLQNELEQPLATLKEAYLEVMLRPLDEVWRERAEEARQWVQAWLLRLPGSWRPIQAFLGAMMGALELATYHTLSWAEAEVSWTLRQLYKPLRSMYSYSARNRSVMVRLPLLLVGDEPLDVAQVVSYLVEEKLLRPLRRLYEANMLAEFYGFQRRLLRSPFKQYAVVVGTRYLVTFDGQVWGLGPCCGSFLLAKDFTHQTFSLMLSRTSSGFTALHVELNHTTLVLYPSLKAYKQYDTAWPQDSCWDLDPPPAMLSTGPKVELSSEDGVSVFCDVPAGLCSLTLSLWHHGVSAGLLGTNNNEADDELMLPDGTEAASLEELTRAWQVGENCGAVERMQQPCSGHRTTCQAFFQEPRSSLGNCFQVVDPAPFLSLCVQDTCDPMELQSACHLAAAYIYLCAQDSVPLALPLQCV", "length": 3161, "header": "tr|A0A9J7GCH8-1|A0A9J7GCH8_CRIGR Isoform 1 of Uncharacterized protein LOC103163831 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163831 PE=4 SV=1 CANONICAL=A0A9J7GCH8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8/entry#A0A9J7GCH8-1", "sequence": { "sequence": "MLVPTGLLALVLLWVQAGMTSGKIADSHTRQEASCMVACKETAGPHLPVGTRYTYRFSSNTSTSLRGAPLETSGLGLQGLAILEVLGPCQMTLWLPDFKVTSVLGSKVKVLKESESLSAVLGRNPLGFIFSAGQVLHLCPHRSEPRWALNVKRSVLSLVQSCPGVHESKTFEEVDILGRCPTTYQSQGDLLLKTKDLSLCSLHTAHSSLNTQPLPGMASLASSFSCQQSFQAGVLHKAACKELHTAGPLFQKARAAHTLVLSSITLLNMTARDPAITDTDYKDVSPSSLQYEWEETLSQATVDMAAALVKKLCVAQPTSFEATEIFLMLVSELQGLSVDELTAVWHLSSFKCHDDRHPLVDALPSCGTQNCVGLMKQLILAGEVEADQAEAWLWSLAFIPEPTDAMVHTLLPLLQSPEASPGAFLGISALVHNLCAALDGHCQQLPGVGSLVKILGEALGVNCSFPEPVDAGQLQLVLKAIGNAGLAAAALAPVLSTCASLRGSSPEIRLAAIQAFRRIPCFADRSVLSRLYQAPEEDTELRINAYLALMRCPSEEVFAQVQHTQATERSTQVGSFVWSHILQLLETDDPLKRDLRDSLPEDILSQQFQVETWKHSSYSDVTFHSTSGSLGGNLERTLLFCPRSFLPCSATVNLTVHVAGWAFNLLELGLQLENAEDIIHSVLGSKSFWRQEGKKEAEPGNTGPEPGLDGSDCAGERSRRMKNLQEKVAHRSRARQTPSCQLSVKVFGHELSFLDCGPLGGHRRRWSLPLVELAIKLLKGQEVQVTRRLSLAVGELSFPTMSGIPARLTLHALATVSIHAQAVADFQQLSDFSLSGHIKPSALLQVSAQMGTEGTLGQAGLRWLTRVRGTASLDGGIQARKGQDLKVHLNAPEDSVELLSFSSRLYLVTGDSVKNLSEGHSFSESQSCTQEKVSQAWGWQLCTNVAWPGPGQPSLLSAPVFMDLILKKQDPGLQLYLLEAAYTLHFQKDSWLPEEATAHLFMGTPQSEVARDVGVDISYSVPQRKCRLKLLHPQKKIQLDGKMEVLKSMHMGHLELVLDDRDVYYIKGHSDLQPESGNKTQRFEAQVEAKLVTAGRPIVLDGNITWQTGSSLSISASLRRTLNDWAHGTVLLEKKAEAGLQSAILSIQLQVPGVVELHIQGLLEQHGPVGNSTLRIKYGLLGHKRHVAHECSTHQRLRMENGPKDTHELELAHEFHCTQLPIISHKVQLQHKQGLDHLRWQLEASYGEQWAASSNKRFLRIRQTFKNDSGPALRNYFLELALQVPERQVDCLTQLYHLSLRQPHIKSSTYLKVLFNGQLPFVAGLHWKDTSKAALWRWEGALNLDSPWLTVSAAHRLNWPHWAMFQAVSELTLAKAWTLKDLVISMTCRSQDHDREVKIQVYTEATTYLWVSMVTTLMPGLFHSRSELESAWSTAVQSEIHAENSQDRKVLHCWLKSLRRELNFTAAYKHTKKPPKTQVLLTVLGTSVPGQPRGLQLEGELEQLQRGKTLYRKRGTLLLRHPWHLLVPQSLLLQGTFMVDKQRQHHSLETKAVLNSQEEILHTVVLSRQAGHPYICTGLTHPFNDKTIPRSLEGCLVAWNLSNSKNSELKATLKVNQKVILYLKGLHQDSSQHGGIQHSVALEATHSSQTLHLNGGFDLTRRRRQGTFDFSTDVQASINHNATSQVSVQLNKSSSHLAFSLQFQPLDGLAFPPSLQVQAATGCHKERRVDVSLSVRVSGRELLLLEADTSKQRRRSRRGWNMRASLHQAVFSTPRALQLQLSSMVTPARVQMFSKVLVDQDSAQLLLKTSEGRRGGWVLSLWSLAQHSVAGWTKVPRVLSLKSMLKQKMAFREGSVMVATDSAMLSFLLRDKYEETGNGSLHSMTCTITQNYSQALPAELQLRGRQQTYTGALGGQASIHGDLISLALDGTCTWDLGHHQFSDNLTHNLGPLGDAGPASNSGLQVPSAQESSNRSAQMELWSANCHLNASLDPSSPTIPSHRHRAVPFSIYGHGHIQVSVDIRDGAASFEHSTYISTGPLSINCSVNYWAHEGRLELWGHSQHDSEVLLQAGLPDEANLQAELQIQETQTWAHVVLHGRNSKVSVDVTALLTWLPNGTLEATVNTSHTVHAFQRLGLPFSSQLLFRELWTTEDMSSSLQITCDTQDILSLHVHGQNHANSKELLLWGGHHLSSLLDCCPRSVSATAKLQYSKDETQGTFVLEMEERRFHVSTSLLAAKDDLASVILLQQTFLQLSTFPTELALRTLFQRTQGTHILYHVVQWDGREAALNGSLSSALSELSGNVRLQVELSHQLSLSLPHHCSLHLSSEHSRDKHHGDLAVAWDNKDQVQQSRDRSSPVTLEVTWAERSSMNSVAWDGCLAASLGQLQGTWGLGPLQACGALTQTPVMFSEQLDLSWGRHRLQQNVTYEKRQLPQWDKVHAEVTLEHILSAPCAKHSFQGTVETDYMHKLRHTLHLGLCNLPRALSFSGEHSLDQGALLLRSQYHLGLAPEPDQGLHFSLTLYNHSRPNAPDFSGQLELQGPRAQQLLLLGRITTSASQSLVQLEGSMDKDETLRLLVSWALSCLRASAAHVEAPGSREESVMLQACTHRRAVEVEALLQKSGQHAQPLGHLTLRAVNQSLLLVAHGCHGALLSYMESRMTAIGSQVRAQLEEKTQSLDDYVSRFRNLVQPVGTLDGAAECLVQLTQVGLGAVQAGGQVVATLWARGQAKHVLTGHLPLYLEHLQAEMAQLQNELEQPLATLKEAYLEVMLRPLDEVWRERAEEARQWVQAWLLRLPGSWRPIQAFLGAMMGALELATYHTLSWAEAEVSWTLRQLYKPLRSMYSYSARNRSVMVRLPLLLVGDEPLDVAQVVSYLVEEKLLRPLRRLYEANMLAEFYGFQRRLLRSPFKQYAVVVGTRYLVTFDGQVWGLGPCCGSFLLAKDFTHQTFSLMLSRTSSGFTALHVELNHTTLVLYPSLKAYKQYDTAWPQDSCWDLDPPPAMLSTGPKVELSSEDGVSVFCDVPAGLCSLTLSLWHHGVSAGLLGTNNNEADDELMLPDGTEAASLEELTRAWQVGENCGAVERMQQPCSGHRTTCQAFFQEPRSSLGNCFQVVDPAPFLSLCVQDTCDPMELQSACHLAAAYIYLCAQDSVPLALPLQCV", "length": 3161, "header": "tr|A0A9J7GCH8-1|A0A9J7GCH8_CRIGR Isoform 1 of Uncharacterized protein LOC103163831 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163831 PE=4 SV=1 CANONICAL=A0A9J7GCH8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103163831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163831", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid transporter activity", "id": "GO:0005319", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005319", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1078, "end_pos": 1080, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1103, "end_pos": 1105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1171, "end_pos": 1173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1267, "end_pos": 1269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1463, "end_pos": 1465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1600, "end_pos": 1602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1681, "end_pos": 1683, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1691, "end_pos": 1693, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1878, "end_pos": 1880, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1891, "end_pos": 1893, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1944, "end_pos": 1946, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1973, "end_pos": 1975, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1988, "end_pos": 1990, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2043, "end_pos": 2045, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2116, "end_pos": 2118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2124, "end_pos": 2126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2290, "end_pos": 2292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2425, "end_pos": 2427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2524, "end_pos": 2526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2638, "end_pos": 2640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2850, "end_pos": 2852, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2968, "end_pos": 2970, "annotation": "n_glycosylation_sequon" }, { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" }, { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" }, { "start_pos": 915, "end_pos": 917, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8" }, { "id": "PS51233", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51233" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFD", "eco_id": "ECO_0000259", "start_pos": 2911, "end_pos": 3080, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCH8" }, { "id": "PS51211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Vitellogenin", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 650, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1078, "end_pos": 1080 }, { "start_pos": 1103, "end_pos": 1105 }, { "start_pos": 1171, "end_pos": 1173 }, { "start_pos": 1267, "end_pos": 1269 }, { "start_pos": 1463, "end_pos": 1465 }, { "start_pos": 1600, "end_pos": 1602 }, { "start_pos": 1681, "end_pos": 1683 }, { "start_pos": 1691, "end_pos": 1693 }, { "start_pos": 1878, "end_pos": 1880 }, { "start_pos": 1891, "end_pos": 1893 }, { "start_pos": 1944, "end_pos": 1946 }, { "start_pos": 1973, "end_pos": 1975 }, { "start_pos": 1988, "end_pos": 1990 }, { "start_pos": 2043, "end_pos": 2045 }, { "start_pos": 2116, "end_pos": 2118 }, { "start_pos": 2124, "end_pos": 2126 }, { "start_pos": 2290, "end_pos": 2292 }, { "start_pos": 2425, "end_pos": 2427 }, { "start_pos": 2524, "end_pos": 2526 }, { "start_pos": 2638, "end_pos": 2640 }, { "start_pos": 268, "end_pos": 270 }, { "start_pos": 2850, "end_pos": 2852 }, { "start_pos": 2968, "end_pos": 2970 }, { "start_pos": 462, "end_pos": 464 }, { "start_pos": 60, "end_pos": 62 }, { "start_pos": 653, "end_pos": 655 }, { "start_pos": 915, "end_pos": 917 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282103", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282103" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCS5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751363", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCS5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GCS5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GCS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15936", "database": "CDD", "categories": [ "Protein 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"MEADSQVCSNCKRDVASVHFTLHEAHCLRFLVLCPECEEPIPKSKMKEHAETVHQQTKEIQQHPARCKFCDLAVHFGKLDAHEPHCGLRTERCPHCNQPITLRMLAQHKIVCLRAKAKHEEGKRNVSPERKTRCDYCKQMIPENKYVSHMKQCPASRTVKYLQNGKPKILPPSLTSQVAGNQTSTVMTDVRPKTKIRNSSTKRETKDQNVLMGLPLKPALQPRAALPTGDAYDILQRCCRCDILLPLPILNQHQEKCLRLAQRETNK", "length": 267, "header": "tr|A0A9J7GF69-1|A0A9J7GF69_CRIGR Isoform 1 of XIAP-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Xaf1 PE=4 SV=1 CANONICAL=A0A9J7GF69-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF69/entry#A0A9J7GCU4-1", "sequence": { "sequence": "MEADSQVCSNCKRDVASVHFTLHEAHCLRFLVLCPECEEPIPKSKMKEHAETVHQQKQCPASRTVKYLQNGKPKILPPSLTSQVAGNQTSTVMTDVRPKTKIRNSSTKRETKDQNVLMGLPLKPALQPRAALPTGDAYDILQRCCRCDILLPLPILNQHQEKCLRLAQRETNK", "length": 173, "header": "tr|A0A9J7GCU4-1|A0A9J7GF69_CRIGR Computationally mapped isoform of XIAP-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Xaf1 PE=4 SV=1 CANONICAL=A0A9J7GF69-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF69/entry#A0A9J7GF69-1", "sequence": { "sequence": "MEADSQVCSNCKRDVASVHFTLHEAHCLRFLVLCPECEEPIPKSKMKEHAETVHQQTKEIQQHPARCKFCDLAVHFGKLDAHEPHCGLRTERCPHCNQPITLRMLAQHKIVCLRAKAKHEEGKRNVSPERKTRCDYCKQMIPENKYVSHMKQCPASRTVKYLQNGKPKILPPSLTSQVAGNQTSTVMTDVRPKTKIRNSSTKRETKDQNVLMGLPLKPALQPRAALPTGDAYDILQRCCRCDILLPLPILNQHQEKCLRLAQRETNK", "length": 267, "header": "tr|A0A9J7GF69-1|A0A9J7GF69_CRIGR Isoform 1 of XIAP-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Xaf1 PE=4 SV=1 CANONICAL=A0A9J7GF69-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF69/entry#A0A9J7GF89-1", "sequence": { "sequence": "MKEHAETVHQQTKEIQQHPARCKFCDLAVHFGKLDAHEPHCGLRTERCPHCNQPITLRMLAQHKIVCLRAKAKHEEGKRNVSPERKTRCDYCKQMIPENKYVSHMKQCPASRTVKYLQNGKPKILPPSLTSQVAGNQTSTVMTDVRPKTKIRNSSTKRETKDQNVLMGLPLKPALQPRAALPTGDAYDILQRCCRCDILLPLPILNQHQEKCLRLAQRETNK", "length": 222, "header": "tr|A0A9J7GF89-1|A0A9J7GF89_CRIGR Computationally mapped isoform of XIAP-associated factor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Xaf1 PE=4 SV=1 CANONICAL=A0A9J7GF69-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCU4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCU4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754608", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754608", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF69" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282298", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282298" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cct6b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19", "locus": {} } ], "crossref": [ { "id": "A0A9J7GD19", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GD19", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03342", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03342", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764422", "url": "https://www.ncbi.nlm.nih.gov/gene/100764422", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764422", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764422", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GD19", "url": "https://www.orthodb.org/?gene=A0A9J7GD19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282298", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282298", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GD19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAIKVANPAAEVTRSQAALAVNICAARGLQDVLRPSLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFDAAKTKALEVLDNIKVEKEMKREILLDVARTSLRTKVHAELADVLTEAVVDSVLAIRRPGLPIDLFMVEIVEMRHKSETDTQLIRGLVLDHGARHPSMKKQVQDAFILICNVSLEYEKTEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPFSLEMLAKYDIVALRRAKRRNLERLTLACGGIAVNSFEDLNEDCLGHAGLVFEYSLGEEKFTFIEDCVNPLSVTLLIKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRARLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTEHAESKELVGIDLNTGEPMVAAEAGVWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMSSLRD", "length": 531, "header": "tr|A0A9J7GD19-1|A0A9J7GD19_CRIGR Isoform 1 of T-complex protein 1 subunit zeta-2 OS=Cricetulus griseus OX=10029 GN=Cct6b PE=3 SV=1 CANONICAL=A0A9J7GD19-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GD19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19/entry#A0A9J7GD19-1", "sequence": { "sequence": "MAAIKVANPAAEVTRSQAALAVNICAARGLQDVLRPSLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFDAAKTKALEVLDNIKVEKEMKREILLDVARTSLRTKVHAELADVLTEAVVDSVLAIRRPGLPIDLFMVEIVEMRHKSETDTQLIRGLVLDHGARHPSMKKQVQDAFILICNVSLEYEKTEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPFSLEMLAKYDIVALRRAKRRNLERLTLACGGIAVNSFEDLNEDCLGHAGLVFEYSLGEEKFTFIEDCVNPLSVTLLIKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRARLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTEHAESKELVGIDLNTGEPMVAAEAGVWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMSSLRD", "length": 531, "header": "tr|A0A9J7GD19-1|A0A9J7GD19_CRIGR Isoform 1 of T-complex protein 1 subunit zeta-2 OS=Cricetulus griseus OX=10029 GN=Cct6b PE=3 SV=1 CANONICAL=A0A9J7GD19-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764422", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764422", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "pmid": "" }, { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "pmid": "" }, { "name": "ATP-dependent protein folding chaperone", "id": "GO:0140662", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140662", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chaperonin-containing T-complex", "id": "GO:0005832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005832", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3H6T7-1", "G3H7V9-1", "G3HCT4-1", "G3HIC5-1", "G3HIL5-1", "A0A061IR73-1", "G3GXG9-1", "G3I8R9-1", "G3HH18-1", "A0A9J7FU33-1", "G3I2I1-1", "A0A9J7FTT2-1", "G3IEZ7-1", "G3HKQ8-1", "G3HMB1-1", "G3HCV0-1", "G3HX41-1", "G3I6K0-1", "G3HTL1-1", "G3HU77-1", "G3HAH5-1", "G3HJ88-1", "G3GSH5-1", "G3GY12-1", "G3I5T3-1", "G3I6L7-1", "G3H484-1", "G3IJD1-1", "G3I008-1", "A0A8C2M596-1", "G3IG24-1", "A0A9J7F876-1", "A0A9J7FI42-1", "A0A9J7G1N4-1", "A0A061IJA4-1", "A0A9J7FPD0-1", "A0A9J7G7V8-1", "A0A9J7JQY5-1", "A0A8C2MCA5-1", "A0A9J7H2D3-1", "A0A9J7G2T1-1", "G3HBU1-1", "G3HUZ6-1", "G3HWS4-1", "A0A9J7HCU3-1", "A0A3L7HMZ7-1", "A0A9J7K3T5-1", "A0A8C2MMI4-1", "A0A9J7GRQ0-1", "A0A8C2N055-1", "A0A8C2QHV1-1", "A0A8C2QM19-1", "A0A8C2M4F5-1", "A0A9J7FJ23-1", "A0A9J7FUH6-1", "A0A9J7G659-1", "A0A9J7K2R5-1", "A0A8C2MB35-1", "G3I478-1", "A0A9J7H1K5-1", "A0A8C2QH91-1", "A0A9J7JQ85-1", "A0A9J7K381-1", "A0A061HU45-1", "A0A061I456-1", "A0A061ICN7-1", "A0A061IKS3-1", "A0A3L7H9D4-1", "A0A9J7H2L4-1", "A0A8C2LZL3-1", "A0A8C2M796-1", "A0A8C2MCS3-1", "A0A8C2MPK3-1", "A0A8C2MQ86-1", "A0A3L7ILF9-1", "A0A3L7INC4-1", "A0A8C2LCW6-1", "A0A8C2LRD7-1", "A0A8C2LSK1-1", "A0A9J7JSD0-1", "P18279-1", "P48975-1", "A0A8C2MVH8-1", "A0A8C2MWE0-1", "A0A8C2MYM8-1", "A0A8C2N236-1", "A0A9J7FYM8-1", "A0A8C2QLX9-1", "A0A8C2QNE7-1", "A0A9J7F9W3-1", "A0A9J7JR19-1", "A0A9J7FPK3-1", "A0A9J7JMF4-1", "A0A9J7FV95-1", "A0A9J7FXI2-1", "A0A9J7G412-1", "A0A9J7G5W9-1", "A0A9J7GCV1-1", "A0A9J7H3Y2-1", "A0A9J7GF88-1", "A0A9J7GHR4-1", "A0A9J7GID0-1", "A0A9J7JVX0-1", "A0A9J7KF39-1", "A0A9J7H4G1-1", "A0A9J7H9J6-1", "A0A9J7JEW1-1", "A0A9J7JIL5-1", "A0A9J7FCH5-1", "A0A8C2MFM1-1", "A0A8C2MWH4-1", "A0A8C2LG83-1", "A0A9J7GDX9-1", "A0A9J7H2C5-1", "A0A9J7GN75-1", "A0A9J7JT79-1", "A0A9J7K1D9-1", "A0A061IIX2-1", "A0A8C2M474-1", "A0A8C2N386-1", "A0A9J7GR00-1", "O35501-1", "P18708-1", "P19378-1", "P46633-1", "Q60452-1", "A0A8C2LBG1-1", "A0A8C2LR22-1", "A0A8C2M4G0-1", "A0A8C2M6G7-1", "G3HCS2-1", "P70099-1", "A0A9J7FI19-1", "A0A9J7G6M1-1", "A0A9J7FJ37-1", "A0A9J7G7R5-1", "A0A8C2MAV3-1", "A0A8C2N184-1", "A0A9J7F1E5-1", "A0A8C2MBY6-1", "A0A9J7JLC6-1" ], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HU45", "gene_name": "Ercc6l", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061HU45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HU45" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A061HU45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HU45" } ] } ] }, { "uniprot_ac": 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"evidence": [ { "id": "A0A061IIX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IIX2" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A061IIX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IIX2" } ] } ] }, { "uniprot_ac": "A0A061IJA4", "gene_name": "Dhx29", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061IJA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A061IJA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA4" } ] } ] }, { "uniprot_ac": "A0A061IKS3", "gene_name": "Helq", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061IKS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IKS3" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A061IKS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IKS3" } ] } ] }, { "uniprot_ac": "A0A061IR73", "gene_name": "PEX6", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A061IR73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IR73" } ] } ] }, { "uniprot_ac": "A0A3L7H9D4", "gene_name": "Dhx58", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A3L7H9D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7H9D4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A3L7H9D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7H9D4" } ] } ] }, { "uniprot_ac": "A0A3L7HMZ7", "gene_name": "Ddx51", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": 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"activity": "", "evidence": [ { "id": "A0A3L7INC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INC4" } ] } ] }, { "uniprot_ac": "A0A8C2LBG1", "gene_name": "Dna2", "activity": [ { "ec_number": "3.1.-.-", "activity": "", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] }, { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] } ] }, { "uniprot_ac": "A0A8C2LCW6", "gene_name": "Ascc3", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LCW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCW6" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A8C2LCW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCW6" } ] } ] }, { "uniprot_ac": "A0A8C2LG83", "gene_name": "Ddx43", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LG83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LG83" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LG83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LG83" } ] } ] }, { "uniprot_ac": "A0A8C2LR22", "gene_name": "Dhx16", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LR22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LR22" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LR22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LR22" } ] } ] }, { "uniprot_ac": "A0A8C2LRD7", "gene_name": "Mcm3", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRD7" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2LRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRD7" } ] } ] }, { "uniprot_ac": "A0A8C2LSK1", "gene_name": "Eif4a1", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSK1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSK1" } ] } ] }, { "uniprot_ac": "A0A8C2LZL3", "gene_name": "Mov10", "activity": [ { 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phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2MAV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAV3" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2MAV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAV3" } ] } ] }, { "uniprot_ac": "A0A8C2MB35", "gene_name": "Ddx21", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB35" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB35" } ] } ] }, { "uniprot_ac": "A0A8C2MBY6", "gene_name": "Entpd3", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] } ] }, { "uniprot_ac": "A0A8C2MCA5", "gene_name": "Ddx41", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] } ] }, { "uniprot_ac": "A0A8C2MCS3", "gene_name": "Ddx47", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MCS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS3" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MCS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS3" } ] } ] }, { "uniprot_ac": "A0A8C2MFM1", "gene_name": "Vps4b", "activity": [ { "ec_number": "3.6.4.6", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MFM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFM1" } ] }, { "ec_number": "3.6.4.6", "activity": "", "evidence": [ { "id": "A0A8C2MFM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFM1" } ] } ] }, { "uniprot_ac": "A0A8C2MMI4", "gene_name": "Riok1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": 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"ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MVH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVH8" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2MVH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVH8" } ] } ] }, { "uniprot_ac": "A0A8C2MWE0", "gene_name": "Snrnp200", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWE0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWE0" } ] } ] }, { "uniprot_ac": "A0A8C2MWH4", "gene_name": "Ddx25", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MWH4", "database": 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[ { "id": "A0A8C2N055", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N055" } ] } ] }, { "uniprot_ac": "A0A8C2N184", "gene_name": "Entpd8", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] } ] }, { "uniprot_ac": "A0A8C2N236", "gene_name": "Atp13a4", "activity": [ { "ec_number": "7.2.2.-", "activity": "", "evidence": [ { "id": "A0A8C2N236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N236" } ] } ] }, { "uniprot_ac": "A0A8C2N386", "gene_name": "Vcp", "activity": [ { "ec_number": "3.6.4.6", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] }, { "ec_number": "3.6.4.6", "activity": "", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] } ] }, { "uniprot_ac": "A0A8C2QH91", "gene_name": "Ino80", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A8C2QH91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH91" } ] } ] }, { "uniprot_ac": "A0A8C2QHV1", "gene_name": "Ddx20", "activity": [ { "ec_number": "3.6.1.15", "activity": "a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-diphosphate + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": 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translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7F9W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W3" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7F9W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W3" } ] } ] }, { "uniprot_ac": "A0A9J7FCH5", "gene_name": "Mov10l1", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCH5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCH5" } ] } ] }, { "uniprot_ac": "A0A9J7FI19", "gene_name": "Xrcc6", "activity": [ { "ec_number": "4.2.99.18", "activity": "2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "4.2.99.18", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] } ] }, { "uniprot_ac": "A0A9J7FI42", "gene_name": "Fbh1", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FI42", "database": "UniProtKB", "url": 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"", "evidence": [ { "id": "A0A9J7FJ37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ37" } ] } ] }, { "uniprot_ac": "A0A9J7FPD0", "gene_name": "Dhx32", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FPD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FPD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD0" } ] } ] }, { "uniprot_ac": "A0A9J7FPK3", "gene_name": "Twnk", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7FPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPK3" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7FPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPK3" } ] } ] }, { "uniprot_ac": "A0A9J7FTT2", "gene_name": "Mcm5", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FTT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTT2" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A9J7FTT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTT2" } ] } ] }, { "uniprot_ac": "A0A9J7FU33", "gene_name": "Eif4a2", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FU33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU33" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FU33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU33" } ] } ] }, { "uniprot_ac": "A0A9J7FUH6", "gene_name": "Polq", "activity": [ { "ec_number": "2.7.7.7", "activity": "DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate.", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.7", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.49", "activity": "DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate.", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.49", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": 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"activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] } ] }, { "uniprot_ac": "A0A9J7G1N4", "gene_name": "Fancm", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] } ] }, { "uniprot_ac": "A0A9J7G2T1", "gene_name": "Dhx9", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G2T1", "database": "UniProtKB", "url": 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] } ] }, { "uniprot_ac": "A0A9J7G5W9", "gene_name": "Spata5l1", "activity": [ { "ec_number": "3.6.4.10", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G5W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5W9" } ] }, { "ec_number": "3.6.4.10", "activity": "", "evidence": [ { "id": "A0A9J7G5W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5W9" } ] } ] }, { "uniprot_ac": "A0A9J7G659", "gene_name": "Rtel1", "activity": [ { "ec_number": "5.6.2.-", "activity": "", "evidence": [ { "id": "A0A9J7G659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G659" } ] } ] }, { "uniprot_ac": "A0A9J7G6M1", "gene_name": "Mcm8", "activity": [ { "ec_number": "2.7.8.41", "activity": "a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+).", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "2.7.8.41", "activity": "", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] } ] }, { "uniprot_ac": "A0A9J7G7R5", "gene_name": "Setx", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": 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phosphate + H(+).", "evidence": [ { "id": "A0A9J7GCV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCV1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7GCV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCV1" } ] } ] }, { "uniprot_ac": "A0A9J7GDX9", "gene_name": "Hfm1", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7GDX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDX9" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7GDX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDX9" } ] } ] }, { "uniprot_ac": "A0A9J7GF88", "gene_name": "Dhx33", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7GF88", "database": "UniProtKB", "url": 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"recommended", "evidence": [ { "id": "A0A9J7GD36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ] }, { "name": "Wsb1", "type": "synonym", "evidence": [ { "id": "XP_003495828", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495828" } ] } ], "protein_names": [ { "name": "WD repeat and SOCS box-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7GD36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36/entry#names_and_taxonomy" } ] }, { "name": "WD repeat and SOCS box-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495828", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495828" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 306 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613601.1) and transcript sequence (IACG01046858.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003495828.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495828", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495828" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wsb1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36", "locus": {} } ], "crossref": [ { "id": "A0A9J7GD36", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GD36", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03746", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03746", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760356", "url": "https://www.ncbi.nlm.nih.gov/gene/100760356", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760356", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760356", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GD36", "url": "https://www.orthodb.org/?gene=A0A9J7GD36", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15622", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15622", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15622:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15622:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495828", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495828", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GD36-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFPPRVNEKEIVRSRTIGELLAPAAPFDKKCGGETWTVAFAPDDSYFAWSQGYRIVKLVPWSQCLKNFLLHGSKNVTNSSCLKLTRQDSNGGQKNNPREHIIDCGDIVWSLAFGSSVPEKQSRCINVEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNLVDHIEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFLWNMEKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVCIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRGVSFSHDGLHVASIADDKMVRFWRIGEDCPVQVAPLSNGLCCAFSADGSVLAAGTQDGSVCFWATPRQVPSLQHLCRMSIRRVMPTQEVQKLPVPSKVLEFLSYRF", "length": 421, "header": "tr|A0A9J7GD36-1|A0A9J7GD36_CRIGR Isoform 1 of WD repeat and SOCS box-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Wsb1 PE=4 SV=1 CANONICAL=A0A9J7GD36-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GD36-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36/entry#A0A9J7GD36-1", "sequence": { "sequence": "MASFPPRVNEKEIVRSRTIGELLAPAAPFDKKCGGETWTVAFAPDDSYFAWSQGYRIVKLVPWSQCLKNFLLHGSKNVTNSSCLKLTRQDSNGGQKNNPREHIIDCGDIVWSLAFGSSVPEKQSRCINVEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNLVDHIEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFLWNMEKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVCIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRGVSFSHDGLHVASIADDKMVRFWRIGEDCPVQVAPLSNGLCCAFSADGSVLAAGTQDGSVCFWATPRQVPSLQHLCRMSIRRVMPTQEVQKLPVPSKVLEFLSYRF", "length": 421, "header": "tr|A0A9J7GD36-1|A0A9J7GD36_CRIGR Isoform 1 of WD repeat and SOCS box-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Wsb1 PE=4 SV=1 CANONICAL=A0A9J7GD36-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36/entry#A0A9J7JVA4-1", "sequence": { "sequence": "MEKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVCIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRGVSFSHDGLHVASIADDKMVRFWRIGEDCPVQVAPLSNGLCCAFSADGSVLAAGTQDGSVCFWATPRQVPSLQHLCRMSIRRVMPTQEVQKLPVPSKVLEFLSYRF", "length": 179, "header": "tr|A0A9J7JVA4-1|A0A9J7JVA4_CRIGR Computationally mapped isoform of WD repeat and SOCS box-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Wsb1 PE=4 SV=1 CANONICAL=A0A9J7GD36-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 302, "start_aa": "Thr", "end_pos": 302, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr302", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760356", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760356", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD36", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GD36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD36" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 377, "end_pos": 421, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 302 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 77, "end_pos": 79 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GD55-1", "uniprot_ac": "A0A9J7GD55", "uniprot_id": "A0A9J7GD55_CRIGR", "mass": { "chemical_mass": 14099.0, "monoisotopic_mass": 14099.0 }, "refseq": { "ac": "XP_027282456", "name": "60S ribosomal protein L36a-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282456" }, "gene_names": [ { "name": "LOC103161070", "type": "recommended", "evidence": [ { "id": "A0A9J7GD55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55" } ] }, { "name": "LOC103161070", "type": "synonym", "evidence": [ { "id": "XP_027282456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282456" } ] } ], "protein_names": [ { "name": "60S ribosomal protein L36a-like", "type": "synonym", "evidence": [ { "id": "XP_027282456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282456" }, { "id": "A0A9J7GD55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282456" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GD55", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103161070", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55", "locus": {} } ], "crossref": [ { "id": "A0A9J7GD55", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GD55", "database": "AlphaFoldDB", "categories": [] }, { "id": "103161070", "url": "https://www.ncbi.nlm.nih.gov/gene/103161070", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000552", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000552", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103161070", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GD55", "url": "https://www.orthodb.org/?gene=A0A9J7GD55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00935", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00935", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GD55", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GD55-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNVPKTRRTFCKKCSKHQPHKVTQYKKSKDSLYAQGKRCYDRKQSGYGGQTKPTFWGKKKKAKTTKKIVFRLECVEPNCRSKRMLAIKKCKHFELGGKKKRKGQVIQFKAALVMETIKSQ", "length": 121, "header": "tr|A0A9J7GD55-1|A0A9J7GD55_CRIGR Isoform 1 of 60S ribosomal protein L36a-like OS=Cricetulus griseus OX=10029 GN=LOC103161070 PE=3 SV=1 CANONICAL=A0A9J7GD55-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GD55-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD55/entry#A0A9J7GD55-1", "sequence": { "sequence": "MVNVPKTRRTFCKKCSKHQPHKVTQYKKSKDSLYAQGKRCYDRKQSGYGGQTKPTFWGKKKKAKTTKKIVFRLECVEPNCRSKRMLAIKKCKHFELGGKKKRKGQVIQFKAALVMETIKSQ", "length": 121, "header": "tr|A0A9J7GD55-1|A0A9J7GD55_CRIGR Isoform 1 of 60S ribosomal protein L36a-like OS=Cricetulus griseus OX=10029 GN=LOC103161070 PE=3 SV=1 CANONICAL=A0A9J7GD55-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027279898.1. 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This record is derived from a genomic sequence (NW_003614077.1) annotated using gene prediction method: Gnomon. 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"categories": [ "Protein Classification" ] }, { "id": "PF04440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007643301", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643301", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LI97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LI97-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGPGVIAAMHLSHWAAADPRCPIPHLLEKYARADMDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVEFIDLADQDGADVFLPCEDSPPTPQMSGVDNHPEELSLPVPTPDRTTSRTSSLSSDSSNLRSPNPSDGGADTPLAQSDEEDGDDGGAEPGHCS", "length": 193, "header": "tr|A0A9J7GDB8-1|A0A9J7GDB8_CRIGR Isoform 1 of Dysbindin domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dbndd2 PE=3 SV=1 CANONICAL=A0A9J7GDB8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LI97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8/entry#A0A8C2LI97-1", "sequence": { "sequence": "MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVEFIDLADQDGADVFLPCEDSPPTPQMSGVDNHPEELSLPVPTPDRTTSRTSSLSSDSSNLRSPNPSDGGADTPLAQSDEEDGDDGGAEPGHCS", "length": 158, "header": "tr|A0A8C2LI97-1|A0A8C2LI97_CRIGR Computationally mapped isoform of Dysbindin domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dbndd2 PE=3 SV=1 CANONICAL=A0A9J7GDB8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8/entry#A0A9J7GDB8-1", "sequence": { "sequence": "MQGPGVIAAMHLSHWAAADPRCPIPHLLEKYARADMDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVEFIDLADQDGADVFLPCEDSPPTPQMSGVDNHPEELSLPVPTPDRTTSRTSSLSSDSSNLRSPNPSDGGADTPLAQSDEEDGDDGGAEPGHCS", "length": 193, "header": "tr|A0A9J7GDB8-1|A0A9J7GDB8_CRIGR Isoform 1 of Dysbindin domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dbndd2 PE=3 SV=1 CANONICAL=A0A9J7GDB8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 123, "start_aa": "Thr", "end_pos": 123, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr123", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 142, "start_aa": "Thr", "end_pos": 142, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr142", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765248", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1TTI0-1", "protein_name": "Dysbindin domain containing 2", "gene_name": "DBNDD2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESHRPPIGSISSMEVNVDTLEQVELIDLGDQDGADVFLPWEDPPPTPQTAGVDDHPEEPGLPLPTPDRTTSRTSSSSSDTSTNPHSPDPSDGGADTPLAQSDEEEDGGDSRAEPGACS", "length": 160 }, "evidence": [ { "id": "A0A9J7GDB8", "url": "https://omabrowser.org/oma/group/A0A9J7GDB8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E7F9P7-1", "protein_name": "Dysbindin isoform X1", "gene_name": "si:ch211-253b8.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSKGTNLHNKRLPSESEHAQRVPDTEPSQQMRLRERQRFFEEVFQHDVDVYLSSAHLQIDYKRPPLGSISSMEVNVDMLEQMDLMDISDQEALDVFFAASGEEGSLTSPLPDFGHADLEENGLQRSDLPLRIPDPREIKSRMLSTSSNSTCDSQPSNEDGSNTPVVQSDDEDVHEEDMLRTVSTANHTATEESVLPL", "length": 198 }, "evidence": [ { "id": "A0A9J7GDB8", "url": "https://omabrowser.org/oma/group/A0A9J7GDB8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BQY9-1", "protein_name": "Dysbindin domain-containing protein 2", "gene_name": "DBNDD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAGNFLTALEVPVAALAGAASDRRASCERVSPPPPLPHFRLPPLPRSRLPGPVSRPEPGAPLLGCWLQWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS", "length": 259 }, "evidence": [ { "id": "A0A9J7GDB8", "url": "https://omabrowser.org/oma/group/A0A9J7GDB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CRD4-1", "protein_name": "Dysbindin domain-containing protein 2", "gene_name": "Dbndd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVEFIDLADQDGADVFLPCEESSPAPQMSGVDDHPEELSLLVPTSDRTTSRTSSLSSDSSNLRSPNPSDGGGDTPLAQSDEEDGDDGGAEPGPCS", "length": 158 }, "evidence": [ { "id": "A0A9J7GDB8", "url": "https://omabrowser.org/oma/group/A0A9J7GDB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 123, 142 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GDG1-1", "uniprot_ac": "A0A9J7GDG1", "uniprot_id": "A0A9J7GDG1_CRIGR", "mass": { "chemical_mass": 110665.0, "monoisotopic_mass": 110665.0 }, "refseq": { "ac": "XP_027282635", "name": "protein moonraker isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282635" }, "gene_names": [ { "name": "Kiaa0753", "type": "recommended", "evidence": [ { "id": "A0A9J7GDG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ] }, { "name": "Kiaa0753", "type": "synonym", "evidence": [ { "id": "XP_027282635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282635" } ] } ], "protein_names": [ { "name": "Protein moonraker isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GDG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#names_and_taxonomy" } ] }, { "name": "protein moonraker isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027282635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282635" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282635" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0753", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1", "locus": {} } ], "crossref": [ { "id": "100755478", "url": "https://www.ncbi.nlm.nih.gov/gene/100755478", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031447", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031447", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755478", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755478", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GDG1", "url": "https://www.orthodb.org/?gene=A0A9J7GDG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15732", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15732", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15732:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15732:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15718", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15718", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282635", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H219-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H219-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H639", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H639", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H639-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H639-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JX83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JX83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPSQPASTCVHLASGIQLNGRSDLRNLQPQLQFNRNVPTHPSNLAVRYSCPHAIKIEKLKHSYNELYHSKDLDFRDGNDLSSSVSFSVVSEERLSYAVHLAKRDVKRRQFEEHMKDHLRSHSHNAHKCVHVKVEKKDLKSQDVCHSSHQPSKVDISSSGAKVYIYASHPGRSDLPVPNSPPTHDPGLQPQPKIEEHKNLWEQKSLLEVQRLRKELSSCIHKIEAVTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSRLATAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSAKLDTDPSVLDVVIDILQQIEALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 984, "header": "tr|A0A9J7GDG1-1|A0A9J7GDG1_CRIGR Isoform 1 of Protein moonraker isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GDG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7GDG1-1", "sequence": { "sequence": "MGPSQPASTCVHLASGIQLNGRSDLRNLQPQLQFNRNVPTHPSNLAVRYSCPHAIKIEKLKHSYNELYHSKDLDFRDGNDLSSSVSFSVVSEERLSYAVHLAKRDVKRRQFEEHMKDHLRSHSHNAHKCVHVKVEKKDLKSQDVCHSSHQPSKVDISSSGAKVYIYASHPGRSDLPVPNSPPTHDPGLQPQPKIEEHKNLWEQKSLLEVQRLRKELSSCIHKIEAVTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSRLATAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSAKLDTDPSVLDVVIDILQQIEALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 984, "header": "tr|A0A9J7GDG1-1|A0A9J7GDG1_CRIGR Isoform 1 of Protein moonraker isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H219-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7H219-1", "sequence": { "sequence": "MGPSQPASTCVHLASGIQLNGRSDLRNLQPQLQFNRNVPTHPSNLAVRYSCPHAIKIEKLKHSYNELYHSKDLDFRDGNDLSSSVSFSVVSEERLSYAVHLAKRDVKRRQFEEHMKDHLRSHSHNAHKCVHVKVEKKDLKSQDVCHSSHQPSKVDISSSGAKVYIYASHPGRSDLPVPNSPPTHDPGLQPQPKIEEHKNLWEQKSLLEVQRLRKELSSCIHKIEAVTKKDDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 785, "header": "tr|A0A9J7H219-1|A0A9J7H219_CRIGR Computationally mapped isoform of Protein moonraker isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7H4C7-1", "sequence": { "sequence": "MKDHLRSHSHNAHKCVHVKVEKKDLKSQDVCHSSHQPSKVDISSSGAKVYIYASHPGRSDLPVPNSPPTHDPGLQPQPKIEEHKNLWEQKSLLEVQRLRKELSSCIHKIEAVTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSRLATAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSAKLDTDPSVLDVVIDILQQIEALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 870, "header": "tr|A0A9J7H4C7-1|A0A9J7H4C7_CRIGR Computationally mapped isoform of Protein moonraker isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H639-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7H639-1", "sequence": { "sequence": "MSRLATAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSAKLDTDPSVLDVVIDILQQIEALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 695, "header": "tr|A0A9J7H639-1|A0A9J7H639_CRIGR Computationally mapped isoform of Protein moonraker isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7JPN1-1", "sequence": { "sequence": "MGPSQPASTCVHLASGIQLNGRSDLRNLQPQLQFNRNVPTHPSNLAVRYSCPHAIKIEKLKHSYNELYHSKDLDFRDGNDLSSSVSFSVVSEERLSYAVHLAKRDVKRRQFEEHMKDHLRSHSHNAHKCVHVKVEKKDLKSQDVCHSSHQPSKVDISSSGAKVYIYASHPGRSDLPVPNSPPTHDPGLQPQPKIEEHKNLWEQKSLLEVQRLRKELSSCIHKIEAVTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPHKIKHTKKALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 912, "header": "tr|A0A9J7JPN1-1|A0A9J7JPN1_CRIGR Computationally mapped isoform of Protein moonraker isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JX83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1/entry#A0A9J7JX83-1", "sequence": { "sequence": "MLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSRLATAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSAKLDTDPSVLDVVIDILQQIEALESLLEKKLSPKKVKKCITEIRSRFPIGSQRILEKWPTVLPKNERRPLVTKETFPQEASRPSVAKRLLADDCQPDVELPVNQKLESELGVIEEDTLPEEAPFILGHSTGVKDEALTPAKTRAVRKKTAMEHVPFRKKDTLEPARLQQQGLHISERNRPNQSYSKSRLQQTTVASRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLKVKSSPRGATKEQSLQREDTTGGSQLGGASEKETARLSWPDAQFSKRLKEPEELEAKEMLRMQKQRLDWLEAETSRRTKELAQLKAEEMDRLQKLSVSAAQLADKVEEAVLERLKPLLIKAQRVNSSVEANSLLKDRSSPSAAAATAAAATTAAATTAATAAAATAAASQPAEQASGISYGSRNIHHLDDCLEDAAHELWAMTHDKNLGLETSATLGDNKDSPNLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQSNPAISERPLAPHPIKITKTATPKSPAVNILLESPCNANSLDESGVTEEESEKREAPFPSAEEDLHQKEGWTPLFVPPRMRHSIGDYCSRFEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 727, "header": "tr|A0A9J7JX83-1|A0A9J7JX83_CRIGR Computationally mapped isoform of Protein moonraker isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa0753 PE=4 SV=1 CANONICAL=A0A9J7GDG1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755478", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755478", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 692, "end_pos": 694, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 518, "end_pos": 520 }, { "start_pos": 692, "end_pos": 694 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GDH7-1", "uniprot_ac": "A0A9J7GDH7", "uniprot_id": "A0A9J7GDH7_CRIGR", "mass": { "chemical_mass": 19080.0, "monoisotopic_mass": 19080.0 }, "refseq": { "ac": "XP_027283501", "name": "lysozyme-like protein 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283501" }, "gene_names": [ { "name": "Lyzl6", "type": "recommended", "evidence": [ { "id": "A0A9J7GDH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDH7" } ] }, { "name": "Lyzl6", "type": "synonym", "evidence": [ { "id": "XP_027283501", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283501" } ] } ], "protein_names": [ { "name": "Lysozyme-like protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GDH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDH7/entry#names_and_taxonomy" } ] }, { "name": "lysozyme-like protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027283501", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283501" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"MTCSFQKLFAVEEEFEDEDFLSAVENAENRFSGTIPGNAGHLTPVSSRPQDTLQARFSRPLTSYPTSSSRPVQGLCLPTLSKPQTIRDPLCSGAVSLRPASISSSSISSQQRTAWTRVLQESSGPQASAAHSGLVFGSHQQGIGGFEAPNQDEFDKALASMELEGAGLELELRVDPGATQILPVQHCEDPILAKRARVADLRESFQKGPIVRCRNPGPSSRPRAAGSLPLPSASAVSHERGSPVPAPQPLQVAGRPIQNIPQNHLPGQPCQSPRAWSSRTPRFPGPRHPHCSSAAFPRGPLPSRAPVSSVESPVSTPRVASTPVPQPALQTPIVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGKNLEEIMVSTPQTPTHGALAKLQTEIVTSSQGSVEEDFGRGPWLTMKSSLGLDDGDPACFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPSQPLPKDLGNFDGNLQPDVAAEPTQGLRTAQNPALSCEEELPEADDLDGLLSELPEDFFCDPSSWDCLKTGHPP", "length": 624, "header": "tr|A0A9J7GDU1-1|A0A9J7GDU1_CRIGR Isoform 1 of Homologous recombination OB-fold protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hrob PE=4 SV=1 CANONICAL=A0A9J7GDU1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GDU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDU1/entry#A0A9J7GDU1-1", "sequence": { "sequence": "MTCSFQKLFAVEEEFEDEDFLSAVENAENRFSGTIPGNAGHLTPVSSRPQDTLQARFSRPLTSYPTSSSRPVQGLCLPTLSKPQTIRDPLCSGAVSLRPASISSSSISSQQRTAWTRVLQESSGPQASAAHSGLVFGSHQQGIGGFEAPNQDEFDKALASMELEGAGLELELRVDPGATQILPVQHCEDPILAKRARVADLRESFQKGPIVRCRNPGPSSRPRAAGSLPLPSASAVSHERGSPVPAPQPLQVAGRPIQNIPQNHLPGQPCQSPRAWSSRTPRFPGPRHPHCSSAAFPRGPLPSRAPVSSVESPVSTPRVASTPVPQPALQTPIVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGKNLEEIMVSTPQTPTHGALAKLQTEIVTSSQGSVEEDFGRGPWLTMKSSLGLDDGDPACFLYTYSIVMVLRKAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPSQPLPKDLGNFDGNLQPDVAAEPTQGLRTAQNPALSCEEELPEADDLDGLLSELPEDFFCDPSSWDCLKTGHPP", "length": 624, "header": "tr|A0A9J7GDU1-1|A0A9J7GDU1_CRIGR Isoform 1 of Homologous recombination OB-fold protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hrob PE=4 SV=1 CANONICAL=A0A9J7GDU1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GID9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDU1/entry#A0A9J7GID9-1", "sequence": { "sequence": "MTCSFQKLFAVEEEFEDEDFLSAVENAENRFSGTIPGNAGHLTPVSSRPQDTLQARFSRPLTSYPTSSSRPVQGLCLPTLSKPQTIRDPLCSGAVSLRPASISSSSISSQQRTAWTRVLQESSGPQASAAHSGLVFGSHQQGIGGFEAPNQDEFDKALASMELEGAGLELELRVDPGATQILPVQHCEDPILAKRARVADLRESFQKGPIVRCRNPGPSSRPRAAGSLPLPSASAVSHERGSPVPAPQPLQVAGRPIQNIPQNHLPGQPCQSPRAWSSRTPRFPGPRHPHCSSAAFPRGPLPSRAPVSSVESPVSTPRVASTPVPQPALQTPIVTNHLVQLVTATNRTPQQPSRPSIRAKTRRFPGPAGLLPHQHSGKNLEEIMVSTPQTPTHGALAKLQTEIVTSSQGSVEEDFGRGPWLTMKSSLGLDDGDPACFLYTYSIVMVLRKIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPSQPLPKDLGNFDGNLQPDVAAEPTQGLRTAQNPALSCEEELPEADDLDGLLSELPEDFFCDPSSWDCLKTGHPP", "length": 559, "header": "tr|A0A9J7GID9-1|A0A9J7GID9_CRIGR Computationally mapped isoform of Homologous recombination OB-fold protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Hrob PE=4 SV=1 CANONICAL=A0A9J7GDU1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDU1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762232", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762232", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "recombinational repair", "id": "GO:0000725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000725", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 528, "end_pos": 530, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GDU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDU1" }, { "id": "PF15072", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15072" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homologous recombination OB-fold protein OB-fold", "eco_id": "ECO_0000259", "start_pos": 458, "end_pos": 539, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 346, "end_pos": 348 }, { "start_pos": 528, "end_pos": 530 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GDZ5-1", "uniprot_ac": "A0A9J7GDZ5", "uniprot_id": "A0A9J7GDZ5_CRIGR", "mass": { "chemical_mass": 20401.0, "monoisotopic_mass": 20401.0 }, "refseq": { "ac": "XP_027283528", "name": "keratin-associated protein 9-9-like isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283528" }, "gene_names": [ { "name": "LOC100770592", "type": "recommended", "evidence": [ { "id": "A0A9J7GDZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5" } ] }, { "name": "LOC100770592", "type": "synonym", "evidence": [ { "id": "XP_027283528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283528" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 9-9-like isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7GDZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 9-9-like isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027283528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283528" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283528", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283528" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GDZ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GDZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770592", "url": "https://www.ncbi.nlm.nih.gov/gene/100770592", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770592", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770592", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283528", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283528", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GDZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTNSCCSPCCQPTCCRTTCCRTTCWRPSCVTSCCQPCCQPSCCGSSCCQPCCQTTCCRTCFQPSCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQPSCCQPSCCQPSCCQPSCCESSCCQPRCCISSCCQPCCQPCCKPCCKPCCKPFCLDLCCQPACSGPVTCTRTCYQPTCVCVPGCLSQGCGSSCCEPCGC", "length": 194, "header": "tr|A0A9J7GDZ5-1|A0A9J7GDZ5_CRIGR Isoform 1 of Keratin-associated protein 9-9-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770592 PE=4 SV=1 CANONICAL=A0A9J7GDZ5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GDZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5/entry#A0A9J7GDZ5-1", "sequence": { "sequence": "MTNSCCSPCCQPTCCRTTCCRTTCWRPSCVTSCCQPCCQPSCCGSSCCQPCCQTTCCRTCFQPSCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQPSCCQPSCCQPSCCQPSCCESSCCQPRCCISSCCQPCCQPCCKPCCKPCCKPFCLDLCCQPACSGPVTCTRTCYQPTCVCVPGCLSQGCGSSCCEPCGC", "length": 194, "header": "tr|A0A9J7GDZ5-1|A0A9J7GDZ5_CRIGR Isoform 1 of Keratin-associated protein 9-9-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770592 PE=4 SV=1 CANONICAL=A0A9J7GDZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5/entry#A0A9J7GGE5-1", "sequence": { "sequence": "MTNSCCSPCCQPTCCRTTCCRTTCWRPSCVSSCCQPCCQPSCCGSSCCQPCCQTTCCRTCFQPSCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQPSCCQPSCCQPSCCQPSCCESSCCQPRCCISSCCQPCCQPCCKPCCKPCCKPFCLDLCCQPACSGPVTCTRTCYHPTCVCVPGCLSQGCGSSCCEPCSC", "length": 194, "header": "tr|A0A9J7GGE5-1|A0A9J7GGE5_CRIGR Computationally mapped isoform of Keratin-associated protein 9-1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770592 PE=4 SV=1 CANONICAL=A0A9J7GDZ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770592", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770592", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDZ5" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GDZ5", "url": 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613892.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502417" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf146", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02", "locus": {} } ], "crossref": [ { "id": "100769388", "url": "https://www.ncbi.nlm.nih.gov/gene/100769388", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769388", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769388", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QNHDTCR", "url": "https://omabrowser.org/oma/group/QNHDTCR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GE02", "url": "https://www.orthodb.org/?gene=A0A9J7GE02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31408", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31408", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31408:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31408:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15162", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15162", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSSGGKERIKWTTTIIISSSLKSYEISTALENRSHKVRYSDTLERGSIVFSLSGVAFLLMDAKECMISAEEIFLTKIEKFINIHQNSFLVLFAPLHGPEEWTLMFRIHQRFLGSNLRILPVHNTVNAVDLMCTIAKTTSKPTIDSICYRMITTKAYIIEQSPVWRTLQKIKLSTDSVSPNLEY", "length": 184, "header": "tr|A0A9J7GE02-1|A0A9J7GE02_CRIGR Isoform 1 of Uncharacterized protein C1orf146 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf146 PE=4 SV=1 CANONICAL=A0A9J7GE02-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GE02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02/entry#A0A9J7GE02-1", "sequence": { "sequence": "MDSSGGKERIKWTTTIIISSSLKSYEISTALENRSHKVRYSDTLERGSIVFSLSGVAFLLMDAKECMISAEEIFLTKIEKFINIHQNSFLVLFAPLHGPEEWTLMFRIHQRFLGSNLRILPVHNTVNAVDLMCTIAKTTSKPTIDSICYRMITTKAYIIEQSPVWRTLQKIKLSTDSVSPNLEY", "length": 184, "header": "tr|A0A9J7GE02-1|A0A9J7GE02_CRIGR Isoform 1 of Uncharacterized protein C1orf146 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf146 PE=4 SV=1 CANONICAL=A0A9J7GE02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://omabrowser.org/oma/group/A0A9J7GE02/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VVC0-1", "protein_name": "Protein SPO16 homolog", "gene_name": "SPO16", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESGKEKIKWTTTIIISSSLKSYEVATALENRSHKVRYSDSVENGSIIFSLSGVAFLLMDTKECLLSTEEIFLAKIEKFINIHQNSFLVLSAALHGPEEWKLMFRIQQRFLGCNLRILPVHNTVNAINLMCTIAKTTSKPYIDSICYRMITAKAYIIEQSPVWKTLQKIKLNSDSVNPN", "length": 180 }, "evidence": [ { "id": "A0A9J7GE02", "url": "https://omabrowser.org/oma/group/A0A9J7GE02/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "synaptonemal complex assembly", "id": "GO:0007130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007130", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE02" } ], "pmid": 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"MSSTSSSPKEETYEEEDREFESQAKRLKTEEGEIVYSAEESESRQEATPQAGSDSDSGGGGDGGEGGGGDGDGEEGDGGEEEGDGGEEGDGDDGDEGGSGGDEGCSGGGGGGVASAPGSREGGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL", "length": 599, "header": "tr|A0A9J7GE43-1|A0A9J7GE43_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein L-like isoform X3 OS=Cricetulus griseus OX=10029 GN=Hnrnpll PE=4 SV=1 CANONICAL=A0A9J7GE43-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GE43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43/entry#A0A9J7GE43-1", "sequence": { "sequence": "MSSTSSSPKEETYEEEDREFESQAKRLKTEEGEIVYSAEESESRQEATPQAGSDSDSGGGGDGGEGGGGDGDGEEGDGGEEEGDGGEEGDGDDGDEGGSGGDEGCSGGGGGGVASAPGSREGGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL", "length": 599, "header": "tr|A0A9J7GE43-1|A0A9J7GE43_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein L-like isoform X3 OS=Cricetulus griseus OX=10029 GN=Hnrnpll PE=4 SV=1 CANONICAL=A0A9J7GE43-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43/entry#A0A9J7JY83-1", "sequence": { "sequence": "MKEVAAATKAAAARPPEHAQSLEGGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL", "length": 501, "header": "tr|A0A9J7JY83-1|A0A9J7JY83_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein L-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpll PE=4 SV=1 CANONICAL=A0A9J7GE43-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GE43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GE43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE43" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 207, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 405, "end_pos": 407 }, { "start_pos": 582, "end_pos": 584 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284186", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284186" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEE4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nrip2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEE4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GEE4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GEE4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769051", "url": "https://www.ncbi.nlm.nih.gov/gene/100769051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769051", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769051", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PSCWKES", "url": "https://omabrowser.org/oma/group/PSCWKES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GEE4", "url": "https://www.orthodb.org/?gene=A0A9J7GEE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12917:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12917:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027284186", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284186", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTGQEARRDEGDSRRGQEASLRDRAHLSQQRRLKQATQFLHKDSADLLPLDSLKRLGTSKDLQPHSVIQRRLVEGNQRRLQGESPLVQALIHGHDSSRTSGTQVPALLVNCKCQDQMLRVAVDTGTQHNQISTGCLRRLGLGKRVPKAPGGDLAPGPPSQVEELELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLRLKAPFSELPFLPLYQEPGQ", "length": 229, "header": "tr|A0A9J7GEE4-1|A0A9J7GEE4_CRIGR Isoform 1 of Nuclear receptor-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=Nrip2 PE=4 SV=1 CANONICAL=A0A9J7GEE4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEE4/entry#A0A9J7GEE4-1", "sequence": { "sequence": "MSTGQEARRDEGDSRRGQEASLRDRAHLSQQRRLKQATQFLHKDSADLLPLDSLKRLGTSKDLQPHSVIQRRLVEGNQRRLQGESPLVQALIHGHDSSRTSGTQVPALLVNCKCQDQMLRVAVDTGTQHNQISTGCLRRLGLGKRVPKAPGGDLAPGPPSQVEELELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLRLKAPFSELPFLPLYQEPGQ", "length": 229, "header": "tr|A0A9J7GEE4-1|A0A9J7GEE4_CRIGR Isoform 1 of Nuclear receptor-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=Nrip2 PE=4 SV=1 CANONICAL=A0A9J7GEE4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GEN8-1", "uniprot_ac": "A0A9J7GEN8", "uniprot_id": "A0A9J7GEN8_CRIGR", "mass": { "chemical_mass": 51950.0, "monoisotopic_mass": 51950.0 }, "refseq": { "ac": "XP_027284444", "name": "limb region 1 protein homolog isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284444" }, "gene_names": [ { "name": "Lmbr1", "type": "recommended", "evidence": [ { "id": "A0A9J7GEN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8" } ] }, { "name": "Lmbr1", "type": "synonym", "evidence": [ { "id": "XP_027284444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284444" } ] } ], "protein_names": [ { "name": "Limb region 1 protein homolog isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7GEN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#names_and_taxonomy" } ] }, { "name": "limb region 1 protein homolog isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027284444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284444" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284444", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284444" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lmbr1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GEN8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GEN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753365", "url": "https://www.ncbi.nlm.nih.gov/gene/100753365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753365", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753365", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KSYYIQW", "url": "https://omabrowser.org/oma/group/KSYYIQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GEN8", "url": "https://www.orthodb.org/?gene=A0A9J7GEN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H862", "url": "https://www.orthodb.org/?gene=A0A9J7H862", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12625:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12625:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284444", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284444", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEP8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H533", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H533-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H533-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H862", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H862-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H862-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K036", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K036", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K036-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K036-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKEDGRAGRGVGAGAALPQPSARVHDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARVLETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLQLSHTSRDSETAKPSANGHQKAL", "length": 469, "header": "tr|A0A9J7GEN8-1|A0A9J7GEN8_CRIGR Isoform 1 of Limb region 1 protein homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#A0A9J7GEN8-1", "sequence": { "sequence": "MKEDGRAGRGVGAGAALPQPSARVHDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARVLETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLQLSHTSRDSETAKPSANGHQKAL", "length": 469, "header": "tr|A0A9J7GEN8-1|A0A9J7GEN8_CRIGR Isoform 1 of Limb region 1 protein homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GEP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#A0A9J7GEP8-1", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARVLETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGLHKLQLSHTSRDSETAKPSANGHQKAL", "length": 436, "header": "tr|A0A9J7GEP8-1|A0A9J7GEP8_CRIGR Computationally mapped isoform of Limb region 1 protein homolog isoform X6 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H533-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#A0A9J7H533-1", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARVLETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGLSL", "length": 412, "header": "tr|A0A9J7H533-1|A0A9J7H533_CRIGR Computationally mapped isoform of Limb region 1 protein homolog isoform X7 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H862-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#A0A9J7H862-1", "sequence": { "sequence": "MPFAFFFLESEGFAGLKKGIRARVLETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLQLSHTSRDSETAKPSANGHQKAL", "length": 367, "header": "tr|A0A9J7H862-1|A0A9J7H862_CRIGR Computationally mapped isoform of Limb region 1 protein homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K036-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8/entry#A0A9J7K036-1", "sequence": { "sequence": "MLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEFNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLQLSHTSRDSETAKPSANGHQKAL", "length": 338, "header": "tr|A0A9J7K036-1|A0A9J7K036_CRIGR Computationally mapped isoform of Limb region 1 protein homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Lmbr1 PE=3 SV=1 CANONICAL=A0A9J7GEN8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEN8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753365", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753365", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K4B6-1", "protein_name": "Limb development membrane protein 1", "gene_name": "Lmbr1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRKIHLISVVMAASKGQERVLLRMWNKGSLVHHWHQSTMICFLLFAILYVLSYFIITRYKRKSDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGIVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSAEYNVMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRVFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLIRKFTSAVREELFKALGLHKLHLSDTSRDSETTKPSANGHQKAL", "length": 508 }, "evidence": [ { "id": "A0A9J7GEN8", "url": "https://omabrowser.org/oma/group/A0A9J7GEN8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A287BKQ1-1", "protein_name": "Limb development membrane protein 1", "gene_name": "LMBR1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLVLLALLILGMVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYIITLEEEALQRRLNGLSSSVESNVMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGNASLSAFGFVGAALEIILIFYLMVSSVVGFYSLRFFGDFIPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAVVTTLCLVRKFTSAVREELFKALGLHKLHLSNTSRDSETAKPSANGHQKAL", "length": 490 }, "evidence": [ { "id": "A0A9J7GEN8", "url": "https://omabrowser.org/oma/group/A0A9J7GEN8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1MNF0-1", "protein_name": "Limb development membrane protein 1", "gene_name": "LMBR1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLIFAILYIVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLILLALLILGIVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEEEALQRRLSGLPSSVEYNVTELEQELENVKILKKKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGNASLSAFGFVGAALEIILIFYLMVSSVVGFYSLRVFGNFIPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLHLSDTPRDSDTAKPSANGHQKAL", "length": 490 }, "evidence": [ { "id": "A0A9J7GEN8", "url": "https://omabrowser.org/oma/group/A0A9J7GEN8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8WVP7-1", "protein_name": "Limb region 1 protein homolog", "gene_name": "LMBR1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGIVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEEEALQRRLNGLSSSVEYNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGNASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLHLPNTSRDSETAKPSVNGHQKAL", "length": 490 }, "evidence": [ { "id": "A0A9J7GEN8", "url": "https://omabrowser.org/oma/group/A0A9J7GEN8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JIT0-1", "protein_name": "Limb region 1 protein", "gene_name": "Lmbr1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGQDEVSAREQHFHSQVRESTICFLLFAILYIVSYFIIIRYKRKSDEQEDEDAVVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLAFPHNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGMVWVASALIDSDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEEEALQRRLHGLSSSVEYNVMELEQELENVKILKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGSASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCLIRKFTSAVREELFKALGLHKLHLSDTSRDSETTKPSANGHQKAL", "length": 490 }, "evidence": [ { "id": "A0A9J7GEN8", "url": "https://omabrowser.org/oma/group/A0A9J7GEN8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEN8", "url": 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"gene_names": [ { "name": "LOC103164462", "type": "recommended", "evidence": [ { "id": "A0A9J7GEP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5" } ] }, { "name": "LOC103164462", "type": "synonym", "evidence": [ { "id": "XP_027283568", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283568" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 1-3 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7GEP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 1-3 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027283568", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283568" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283568", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283568" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103164462", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GEP5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GEP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "103164462", "url": "https://www.ncbi.nlm.nih.gov/gene/103164462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103164462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103164462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GEP5", "url": "https://www.orthodb.org/?gene=A0A9J7GEP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GIP2", "url": "https://www.orthodb.org/?gene=A0A9J7GIP2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF01500", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01500", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283568", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283568", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACCATSFCGFPTCSTGGTCGSSCCQPSCCQSSCCQPSCSQSSCCQPSCCQPSCSQSSCCQPSCSQSSCCQPSCCQPSCCGTGSGLEGGSGGMSCRVRWCRPDCRVEGTCLPPCCVVSSTPPTCCQLHHAQASCCRPSYCGQSCCRPACCCYCCQPSCSEPTCCQPSCSEPTCCQPSCSEPTC", "length": 183, "header": "tr|A0A9J7GEP5-1|A0A9J7GEP5_CRIGR Isoform 1 of Keratin-associated protein 1-3 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC103164462 PE=4 SV=1 CANONICAL=A0A9J7GEP5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5/entry#A0A9J7GEP5-1", "sequence": { "sequence": "MACCATSFCGFPTCSTGGTCGSSCCQPSCCQSSCCQPSCSQSSCCQPSCCQPSCSQSSCCQPSCSQSSCCQPSCCQPSCCGTGSGLEGGSGGMSCRVRWCRPDCRVEGTCLPPCCVVSSTPPTCCQLHHAQASCCRPSYCGQSCCRPACCCYCCQPSCSEPTCCQPSCSEPTCCQPSCSEPTC", "length": 183, "header": "tr|A0A9J7GEP5-1|A0A9J7GEP5_CRIGR Isoform 1 of Keratin-associated protein 1-3 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC103164462 PE=4 SV=1 CANONICAL=A0A9J7GEP5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5/entry#A0A9J7GIP2-1", "sequence": { "sequence": "MACCATSFCGFPTCSTGGTCGSSCCQPSCSQSSCCQPSCCQPSCCQPSCCQPSCCQPSCCQSSCGTGCGQEGGSGGVSCRVRWCRPDCRVEGTCLPPCCVVSSTPPTCCQLHHAQASCCRPSYCGQSCCRPACCCYCCQPSCSEPSC", "length": 147, "header": "tr|A0A9J7GIP2-1|A0A9J7GIP2_CRIGR Computationally mapped isoform of Keratin-associated protein 9-3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103164462 PE=4 SV=1 CANONICAL=A0A9J7GEP5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103164462", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103164462", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP5" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEP5", "url": 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GER9-1", "uniprot_ac": "A0A9J7GER9", "uniprot_id": "A0A9J7GER9_CRIGR", "mass": { "chemical_mass": 31234.0, "monoisotopic_mass": 31234.0 }, "refseq": { "ac": "XP_027284197", "name": "LOW QUALITY PROTEIN: killer cell lectin-like receptor subfamily 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027284197.1. 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}, { "name": "LOC113837005", "type": "synonym", "evidence": [ { "id": "XP_027284575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284575" } ] } ], "protein_names": [ { "name": "Probable N-acetyltransferase CML1", "type": "synonym", "evidence": [ { "id": "A0A9J7GET9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9/entry#names_and_taxonomy" } ] }, { "name": "probable N-acetyltransferase CML1", "type": "synonym", "evidence": [ { "id": "XP_027284575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284575" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284575" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GET9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837005", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9", "locus": {} } ], "crossref": [ { "id": "cd04301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837005", "url": "https://www.ncbi.nlm.nih.gov/gene/113837005", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837005", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837005", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GET9", "url": "https://www.orthodb.org/?gene=A0A9J7GET9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13947:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13947:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284575", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GET9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GET9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRLDTQQSPMAPYHIRQYQDSDHKKVLDLFTRGMEEHIPATFRHVLMLPRTILLFLGLPLAMVLVSGSWLLATVCIFSLLLVLRLLARQPWKEYVAKCLRTDMADITKSYLSVCGSGFWVAESGNQVVGIVGGLPVKDPPVGRKHLELLHLSVSSQHRGQGIAKALIRTVLQFARDQGYSDVVLETSVLQRGAETLYLSMGFRRTGQYFMSVFWRLMNILTIQLKYSLSSA", "length": 232, "header": "tr|A0A9J7GET9-1|A0A9J7GET9_CRIGR Isoform 1 of Probable N-acetyltransferase CML1 OS=Cricetulus griseus OX=10029 GN=LOC113837005 PE=4 SV=1 CANONICAL=A0A9J7GET9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GET9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GET9/entry#A0A9J7GET9-1", "sequence": { "sequence": "MPRLDTQQSPMAPYHIRQYQDSDHKKVLDLFTRGMEEHIPATFRHVLMLPRTILLFLGLPLAMVLVSGSWLLATVCIFSLLLVLRLLARQPWKEYVAKCLRTDMADITKSYLSVCGSGFWVAESGNQVVGIVGGLPVKDPPVGRKHLELLHLSVSSQHRGQGIAKALIRTVLQFARDQGYSDVVLETSVLQRGAETLYLSMGFRRTGQYFMSVFWRLMNILTIQLKYSLSSA", "length": 232, "header": "tr|A0A9J7GET9-1|A0A9J7GET9_CRIGR Isoform 1 of Probable N-acetyltransferase CML1 OS=Cricetulus griseus OX=10029 GN=LOC113837005 PE=4 SV=1 CANONICAL=A0A9J7GET9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MHRADSPKPPVAPKPKVTTSPSTPTAKFPRSPRPDSFPSPNSMSRGPKPPIAPKPRLAGPSEYGAGVYLNNSLSKCSNGRLLYQDQGLYDGHHSTLNCSELETDAEYIMVPRAIQREDAPMDGATGEQGFEEEVQEHDTEHMGTEGDMAVPDEEAPSRDSEEGMDHTLEGEEDCDPGPERDETPTSPDEGELNRDNEGGEEDCDQGPGMEEQPMCEEEEEEEEEEKLEEEEKLEEEEKLEEEEEVKEHACNLDGSGPWDEEEPFHREVVLTHVCSESPEVPCWEPGSPETPGKVKEDNEDGSNSTESGEPNQDTGQDTEDANVGSPENGEVPLDVQEQEVTADSPEVFEEDCGDAAEGGGQVDQEEPLRCDEEAYNRETPAATLQVGEDPEEGGNPVQGDPAEENCQIIPFESDSMEEDLAPTLTESPYELFPTESTSFCNDIYSLSESAKGQEPVCGICTEEAPGTDPSRNQHGSLQDGAGEAPPVPDVVVVPEDEDAMDDALNSPYVMGVGLLSPGEGTQSDTQAASGTRSGYSTWEEGDSEGGLVPVDRKNIATRARPHSGKVAGHVPETVLEETGSEACSSAVGTRDTSEEVKKIGMLPEGKPPESGRALPAKPRAFTLYPRSFSVEGRESPLSMFREPDGAGLDSHRVRRKEDNLSLPGAIGSSGSFSQRSHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLIDGDTLDKASKKKKSSFKRLLELTFRKKTDNKVHMDMNLSSSRSSSESSYHGPARVLELDRRSLSNSPQLKCRTGKLRASDSPASLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQMPPRRPARAGTFTKLFEEQSRALSTANENDGYVDMSSFNAFESKQQTSEQEAESAYTEPYKVCPISAAPREDLTSDEEQGSSEEEDGASRDPSLTHKVEGQSRALVIAQELLSSEKAYVQMLQHLSLDFHGAVLRALENIEQEGREPLAQEELRQGLQELPAICDLHQGILENLEQRLGDCGEGQQQVADIFLAREQEFEHHAAHILQFDRYLGLLAESCLLSPRLATTVREFEQSSQGGGQSMKHRMLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQSALTLISKVTDRANESMEQGENLQKLVHIEYSVRGQGDLLQPGREFLKEGTLMRVRGKSRHPRHLFLMNDTLLYTHPQKDGKYRLKSSLPVANMKVSRPVMDKVPYALKIETPETCLTLSASSCAERDEWHYCLSRALPEDYKTQALAAFHHSVEIRERLGISLGERLPTLVPVTHAMMCMNCGCDFSLTVRRHHCHACGKIVCRNCSRNKYPLKCLKNRMAKVCDGCFRELKLRNGPVPGTMRERPVSMSFPLSSSRFSSGSTFSSVFHSISPSTFKKQKKVPSALAEVAASGEGSAISGYLSRCKSGKRRWKKLWLVIKGKVLYTYLASEDKVAMESIPLLGFTIAPEKEAGSNEAGPVFHLYHKKTLFYSFKAEDSNSAQRWIEAMEDASVL", "length": 1541, "header": "tr|A0A9J7GEY6-1|A0A9J7GEY6_CRIGR Isoform 1 of FYVE, RhoGEF and PH domain-containing protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fgd5 PE=4 SV=1 CANONICAL=A0A9J7GEY6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6/entry#A0A9J7GEY6-1", "sequence": { "sequence": "MHRADSPKPPVAPKPKVTTSPSTPTAKFPRSPRPDSFPSPNSMSRGPKPPIAPKPRLAGPSEYGAGVYLNNSLSKCSNGRLLYQDQGLYDGHHSTLNCSELETDAEYIMVPRAIQREDAPMDGATGEQGFEEEVQEHDTEHMGTEGDMAVPDEEAPSRDSEEGMDHTLEGEEDCDPGPERDETPTSPDEGELNRDNEGGEEDCDQGPGMEEQPMCEEEEEEEEEEKLEEEEKLEEEEKLEEEEEVKEHACNLDGSGPWDEEEPFHREVVLTHVCSESPEVPCWEPGSPETPGKVKEDNEDGSNSTESGEPNQDTGQDTEDANVGSPENGEVPLDVQEQEVTADSPEVFEEDCGDAAEGGGQVDQEEPLRCDEEAYNRETPAATLQVGEDPEEGGNPVQGDPAEENCQIIPFESDSMEEDLAPTLTESPYELFPTESTSFCNDIYSLSESAKGQEPVCGICTEEAPGTDPSRNQHGSLQDGAGEAPPVPDVVVVPEDEDAMDDALNSPYVMGVGLLSPGEGTQSDTQAASGTRSGYSTWEEGDSEGGLVPVDRKNIATRARPHSGKVAGHVPETVLEETGSEACSSAVGTRDTSEEVKKIGMLPEGKPPESGRALPAKPRAFTLYPRSFSVEGRESPLSMFREPDGAGLDSHRVRRKEDNLSLPGAIGSSGSFSQRSHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLIDGDTLDKASKKKKSSFKRLLELTFRKKTDNKVHMDMNLSSSRSSSESSYHGPARVLELDRRSLSNSPQLKCRTGKLRASDSPASLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQMPPRRPARAGTFTKLFEEQSRALSTANENDGYVDMSSFNAFESKQQTSEQEAESAYTEPYKVCPISAAPREDLTSDEEQGSSEEEDGASRDPSLTHKVEGQSRALVIAQELLSSEKAYVQMLQHLSLDFHGAVLRALENIEQEGREPLAQEELRQGLQELPAICDLHQGILENLEQRLGDCGEGQQQVADIFLAREQEFEHHAAHILQFDRYLGLLAESCLLSPRLATTVREFEQSSQGGGQSMKHRMLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQSALTLISKVTDRANESMEQGENLQKLVHIEYSVRGQGDLLQPGREFLKEGTLMRVRGKSRHPRHLFLMNDTLLYTHPQKDGKYRLKSSLPVANMKVSRPVMDKVPYALKIETPETCLTLSASSCAERDEWHYCLSRALPEDYKTQALAAFHHSVEIRERLGISLGERLPTLVPVTHAMMCMNCGCDFSLTVRRHHCHACGKIVCRNCSRNKYPLKCLKNRMAKVCDGCFRELKLRNGPVPGTMRERPVSMSFPLSSSRFSSGSTFSSVFHSISPSTFKKQKKVPSALAEVAASGEGSAISGYLSRCKSGKRRWKKLWLVIKGKVLYTYLASEDKVAMESIPLLGFTIAPEKEAGSNEAGPVFHLYHKKTLFYSFKAEDSNSAQRWIEAMEDASVL", "length": 1541, "header": "tr|A0A9J7GEY6-1|A0A9J7GEY6_CRIGR Isoform 1 of FYVE, RhoGEF and PH domain-containing protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fgd5 PE=4 SV=1 CANONICAL=A0A9J7GEY6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100775006", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775006", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1160, "end_pos": 1162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1215, "end_pos": 1217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1352, "end_pos": 1354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 659, "end_pos": 661, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 752, "end_pos": 754, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GEY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 969, "end_pos": 1162, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GEY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 1326, "end_pos": 1379, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GEY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY6" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1191, "end_pos": 1285, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1160, "end_pos": 1162 }, { "start_pos": 1215, "end_pos": 1217 }, { "start_pos": 1352, "end_pos": 1354 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 659, "end_pos": 661 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 752, "end_pos": 754 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GEY7-1", "uniprot_ac": "A0A9J7GEY7", "uniprot_id": "A0A9J7GEY7_CRIGR", "mass": { "chemical_mass": 134923.0, "monoisotopic_mass": 134923.0 }, "refseq": { "ac": "XP_027282392", "name": "sperm-associated antigen 5 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282392" }, "gene_names": [ { "name": "Spag5", "type": "recommended", "evidence": [ { "id": "A0A9J7GEY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7" } ] }, { "name": "Spag5", "type": "synonym", "evidence": [ { "id": "XP_027282392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282392" } ] } ], "protein_names": [ { "name": "Sperm-associated antigen 5 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7GEY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7/entry#names_and_taxonomy" } ] }, { "name": "sperm-associated antigen 5 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027282392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282392" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282392" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spag5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GEY7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GEY7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761908", "url": "https://www.ncbi.nlm.nih.gov/gene/100761908", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761908", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761908", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GEY7", "url": "https://www.orthodb.org/?gene=A0A9J7GEY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15347", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15347", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15347:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15347:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027282392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRVKTLNPGLSPSPQPGKPAMRTPLRELQLQPGALTDSGKGPPMFSSLTPYLRKLELKEKRNNSSPVDFINTENNFLSEQFSPPTKCIEACQHESEPTPESSSPLSTVEKAIETMDDSVVDPVDERVVETMVLLPFPLGQQQELMLEAHLDAMAEINSSPLNESSRLEDLVEKEVAPCVEDSFTEVVTVRPEQPPFQDPPSHLLKYPPKPCSEQFHCSKENLRGLNTEAAPEDLVPSENVLNFSVAWLSPSAALTEDFPVHHVDPGEETVEYRVTQENPGEETVEYRVTQENEKSFPTCPEEVELRDQALAAKAEDDPSLCLTSNLVEMGPQEAPCPTTEGAGRNPGLDAETWMSPLAWLEKGVNTSVMLQNLRQRLSFPSVLQDAAIGNTPLSTCSVGTSFTPPVPPEVGTKHSTSETERLLLGCGPLDLTALSRHDLEENLLNSLVVLEVLSHQLQAWKRQLTVPRGESQDSSTQTDRSPCGVTKTPKHLQDSKEIRQALLQARSVMQSWMLVSRELISLLHLSLTHMNEDRMTVSQESRRAETLVSSCSHVLKKLRAKLQSLRTEREEAKHREEMALHGKDAAEAVLEAFRAHASQRISQLEQDFTSMQEFRGLLQEAQTQLIGLHTEQEELAQQTLSLTSALQQDWTSIQQDCGTWAALLSRSRELTEKLTTKSRQALQERDAAIKEKKQVLKELEQVSAHLEDCKGQIEQLKSENSRLTTDLWAQLQSLTSTDNQLKELQSQHTHCVQDLAMKDELLGQLTQSIKEQAAQWQKEEMELKHTQAELQCQQAVLAKEVQDLKETLEFADQEGQVAHLELGQIECQLKATLEVLRERSLQCEALKDTVENLKAELSSTVAKHEKQALEKTYQHSQELRLLSEQLQSLTLFLQAKLKENKAESEIILPSTGCAPAQEHLLPDDSTASEKALTAVADEEPEPVPVVPLLGSDKSAFTRVASTISFQPTETPGLEKSSSEMSTMLLELQSLCSLLQESKEEAIGALQRKICELQTRLQDQEEEHQEALKAKEADIEKLNQALCLCYKNEKELQEVIQKQNEKILGQIDKSGELISLKEEVTQLTRLLRHAETETKVLQEALEGQLDPSCQLMATNWIQEKVSLSQEVDKLRAMFLEMKNEKAKLVIKYQSHRNILEENLRRSDTELKKLDDTIQYIYETLLSVPEVVKSCKELQRLLEFLS", 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"length": 1201, "header": "tr|A0A9J7GEY7-1|A0A9J7GEY7_CRIGR Isoform 1 of Sperm-associated antigen 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Spag5 PE=4 SV=1 CANONICAL=A0A9J7GEY7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 99, "start_aa": "Thr", "end_pos": 99, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr99", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "id": "A0A9J7GEY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 99 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", 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{ "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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"uniprot_id": "A0A9J7GF02_CRIGR", "mass": { "chemical_mass": 21467.0, "monoisotopic_mass": 21467.0 }, "refseq": { "ac": "XP_027281215", "name": "ADP-ribosylation factor-like protein 16 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281215" }, "gene_names": [ { "name": "Arl16", "type": "recommended", "evidence": [ { "id": "A0A9J7GF02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02" } ] }, { "name": "Arl16", "type": "synonym", "evidence": [ { "id": "XP_027281215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281215" } ] } ], "protein_names": [ { "name": "ADP-ribosylation factor-like protein 16 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027281215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281215" }, { "id": "A0A9J7GF02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027281215.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281215", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281215" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arl16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02", "locus": {} } ], "crossref": [ { "id": "A0A9J7GF02", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GF02", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00878", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00878", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765389", "url": "https://www.ncbi.nlm.nih.gov/gene/100765389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765389", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765389", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GF02", "url": "https://www.orthodb.org/?gene=A0A9J7GF02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46688", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46688", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46688:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46688:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281215", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281215", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GF02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXU7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAQRGRASRRPCSRVPVPRRPPPGPGMCLLLGAAGVGKTLLVKRLQKLSAGDGKGDLGDPPPTRPTVGTNLTDIVAHRKITIRELGGCMSPIWSSYYGNCHSLLFVMDASNPTQLSASCVLLLGLLSAEELAKASVLILFNKIDLPCYMTVEEIKSLIRLPDIIACAKQHITTAEISARDGTGLSAVLLWLQEQHKCSS", "length": 200, "header": "tr|A0A9J7GF02-1|A0A9J7GF02_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 16 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arl16 PE=4 SV=1 CANONICAL=A0A9J7GF02-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GF02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02/entry#A0A9J7GF02-1", "sequence": { "sequence": "MKAQRGRASRRPCSRVPVPRRPPPGPGMCLLLGAAGVGKTLLVKRLQKLSAGDGKGDLGDPPPTRPTVGTNLTDIVAHRKITIRELGGCMSPIWSSYYGNCHSLLFVMDASNPTQLSASCVLLLGLLSAEELAKASVLILFNKIDLPCYMTVEEIKSLIRLPDIIACAKQHITTAEISARDGTGLSAVLLWLQEQHKCSS", "length": 200, "header": "tr|A0A9J7GF02-1|A0A9J7GF02_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 16 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arl16 PE=4 SV=1 CANONICAL=A0A9J7GF02-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02/entry#A0A9J7JXU7-1", "sequence": { "sequence": "MKAQRGRASRRPCSRVPVPRRPPPGPGMCLLLGAAGVGKTLLVKRLQKLSAGDGKGDLGDPPPTRPTVGTNLTDIVAHRKITIRELGGCMSPIWSSYYGNCHSLLLSASCVLLLGLLSAEELAKASVLILFNKIDLPCYMTVEEIKSLIRLPDIIACAKQHITTAEISARDGTGLSAVLLWLQEQHKCSS", "length": 190, "header": "tr|A0A9J7JXU7-1|A0A9J7JXU7_CRIGR Computationally mapped isoform of ADP-ribosylation factor-like protein 16 isoform X4 OS=Cricetulus griseus OX=10029 GN=Arl16 PE=4 SV=1 CANONICAL=A0A9J7GF02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283888", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283888" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF32" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc200", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF32", "locus": {} } ], "crossref": [ { "id": "A0A9J7GF32", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GF32", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836909", "url": "https://www.ncbi.nlm.nih.gov/gene/113836909", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113836909", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836909", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027283888", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283888", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GF32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSAYHWEARRRQMALERRKALIAQQQEQEVKQQEEKKQQCENKSQPSQDSKGPLPPPAKQKPPPEQPQEQVHPQPPPGPKPPKEQDPPTQSTFKDNLQKDTQRQGPAGAQQDGQQPCKSRDGPTILSGYGECATRERR", "length": 139, "header": "tr|A0A9J7GF32-1|A0A9J7GF32_CRIGR Isoform 1 of Coiled-coil domain-containing protein 200 OS=Cricetulus griseus OX=10029 GN=Ccdc200 PE=4 SV=1 CANONICAL=A0A9J7GF32-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GF32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF32/entry#A0A9J7GF32-1", "sequence": { "sequence": "MGSAYHWEARRRQMALERRKALIAQQQEQEVKQQEEKKQQCENKSQPSQDSKGPLPPPAKQKPPPEQPQEQVHPQPPPGPKPPKEQDPPTQSTFKDNLQKDTQRQGPAGAQQDGQQPCKSRDGPTILSGYGECATRERR", "length": 139, "header": "tr|A0A9J7GF32-1|A0A9J7GF32_CRIGR Isoform 1 of Coiled-coil domain-containing protein 200 OS=Cricetulus griseus OX=10029 GN=Ccdc200 PE=4 SV=1 CANONICAL=A0A9J7GF32-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "cd15701", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15701", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754861", "url": "https://www.ncbi.nlm.nih.gov/gene/100754861", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754861", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754861", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGA8", "url": "https://www.orthodb.org/?gene=A0A9J7GGA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793:SF85", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793:SF85", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13832", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13832", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007651864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651864", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LYI8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LYI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0C1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1252, "header": "tr|A0A9J7GGA8-1|A0A9J7GGA8_CRIGR Isoform 1 of Peregrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LYI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A8C2LYI8-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1212, "header": "tr|A0A8C2LYI8-1|A0A8C2LYI8_CRIGR Computationally mapped isoform of Peregrin isoform X17 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GF46-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1246, "header": "tr|A0A9J7GF46-1|A0A9J7GGA8_CRIGR Computationally mapped isoform of Peregrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GF49-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1251, "header": "tr|A0A9J7GF49-1|A0A9J7GF49_CRIGR Computationally mapped isoform of Peregrin isoform X13 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GFK4-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1157, "header": "tr|A0A9J7GFK4-1|A0A9J7GFK4_CRIGR Computationally mapped isoform of Peregrin isoform X19 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GGA8-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1252, "header": "tr|A0A9J7GGA8-1|A0A9J7GGA8_CRIGR Isoform 1 of Peregrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GI26-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1211, "header": "tr|A0A9J7GI26-1|A0A9J7GI26_CRIGR Computationally mapped isoform of Peregrin isoform X18 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GJP6-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGSKYPHPKSGVLGTQFQGLASSPADDPPPLSHSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1245, "header": "tr|A0A9J7GJP6-1|A0A9J7GJP6_CRIGR Computationally mapped isoform of Peregrin isoform X15 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7GKQ4-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1117, "header": "tr|A0A9J7GKQ4-1|A0A9J7GKQ4_CRIGR Computationally mapped isoform of Peregrin isoform X20 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8/entry#A0A9J7K0C1-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEAPHHTEDAEEERLVLLENQKHLPVEEQLKSLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGNLTPHPAVCDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHGMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1218, "header": "tr|A0A9J7K0C1-1|A0A9J7K0C1_CRIGR Computationally mapped isoform of Peregrin isoform X16 OS=Cricetulus griseus OX=10029 GN=Brpf1 PE=4 SV=1 CANONICAL=A0A9J7GGA8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF46" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF46" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754861", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754861", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "MOZ/MORF histone acetyltransferase complex", "id": "GO:0070776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070776", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "histone H4K12 acetyltransferase activity", "id": "GO:0043997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043997", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "histone H4K5 acetyltransferase activity", "id": "GO:0043995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043995", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "histone H4K8 acetyltransferase activity", "id": "GO:0043996", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043996", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" }, { "name": "acetyltransferase activator activity", "id": "GO:0010698", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010698", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 848, "end_pos": 850, "annotation": "n_glycosylation_sequon" }, { "start_pos": 881, "end_pos": 883, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" }, { "id": "PS50014", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bromo", "eco_id": "ECO_0000259", "start_pos": 644, "end_pos": 720, "start_aa": "Gln", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGA8" 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284919", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284919" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tatdn2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74", "locus": {} } ], "crossref": [ { "id": "A0A9J7GF74", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GF74", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01310", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01310", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752200", "url": "https://www.ncbi.nlm.nih.gov/gene/100752200", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752200", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GF74", "url": "https://www.orthodb.org/?gene=A0A9J7GF74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46363:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46363:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284919", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284919", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GF74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4K5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H513", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H513", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H513-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H513-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASERRKVKYHWGSTSEGCPSKRSRSREPGNVASSSRPVRSCASRPRGASSPQRLKARRGNDVARTARSSARRRTSSSSSSSSLSSGSGAGGAASPGFLIASPRRFLTSKRSSLHPAHSSLEEMASLRKEACKVDSKDNSCHSMNSEFATEAEGQSDAMEEPNKFQKRKKDRLRDQGSTMIYLKAIQGILGKSMPKRKGEAATTRVKTSLGEYPSREGPTRNVEGPSRSREGPSVRSGEGLARSNEGPAKGIEGPARSIEGLARSVEGPARSREELVKSVEGPGEKVTVTVPQKEESPTKVRVKKKEESMLDRSSFCNRRVIIDSVKKSSEELLGDQRTVIDKPSPVLEFFDNSDSHADIQKHTDREVVIEHPSSGSDWSDVDELATVRFSQEEPVLLKHSAVPESSSFPTDYVMYPPHLYSSPWCDYASYWTSSHKTPGYPLVGSSSHDSAQTGKSSQDLLSVHSSKSTVNTQSISKDLDIAQESRSQNSHSLQFSRSTEEKEEVKGKRTFREETPPRYTREHTCSSLPRSHREMNLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSTSFPKEFQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNENQERKLLHALRHPKAVAFGEMGLDYSHKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYSVIEPLLKYFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARVKEESLSHTLAVLRENTSRLYSL", "length": 808, "header": "tr|A0A9J7GF74-1|A0A9J7GF74_CRIGR Isoform 1 of Deoxyribonuclease TATDN2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tatdn2 PE=3 SV=1 CANONICAL=A0A9J7GF74-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GF74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74/entry#A0A9J7GF74-1", "sequence": { "sequence": "MASERRKVKYHWGSTSEGCPSKRSRSREPGNVASSSRPVRSCASRPRGASSPQRLKARRGNDVARTARSSARRRTSSSSSSSSLSSGSGAGGAASPGFLIASPRRFLTSKRSSLHPAHSSLEEMASLRKEACKVDSKDNSCHSMNSEFATEAEGQSDAMEEPNKFQKRKKDRLRDQGSTMIYLKAIQGILGKSMPKRKGEAATTRVKTSLGEYPSREGPTRNVEGPSRSREGPSVRSGEGLARSNEGPAKGIEGPARSIEGLARSVEGPARSREELVKSVEGPGEKVTVTVPQKEESPTKVRVKKKEESMLDRSSFCNRRVIIDSVKKSSEELLGDQRTVIDKPSPVLEFFDNSDSHADIQKHTDREVVIEHPSSGSDWSDVDELATVRFSQEEPVLLKHSAVPESSSFPTDYVMYPPHLYSSPWCDYASYWTSSHKTPGYPLVGSSSHDSAQTGKSSQDLLSVHSSKSTVNTQSISKDLDIAQESRSQNSHSLQFSRSTEEKEEVKGKRTFREETPPRYTREHTCSSLPRSHREMNLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSTSFPKEFQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNENQERKLLHALRHPKAVAFGEMGLDYSHKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYSVIEPLLKYFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARVKEESLSHTLAVLRENTSRLYSL", "length": 808, "header": "tr|A0A9J7GF74-1|A0A9J7GF74_CRIGR Isoform 1 of Deoxyribonuclease TATDN2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tatdn2 PE=3 SV=1 CANONICAL=A0A9J7GF74-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74/entry#A0A9J7H3K5-1", "sequence": { "sequence": "MASERRKVKYHWGSTSEGCPSKRSRSREPGNVASSSRPVRSCASRPRGASSPQRLKARRGNDVARTARSSARRRTSSSSSSSSLSSGSGAGGAASPGFLIASPRRFLTSKRSSLHPAHSSLEEMASLRKEACKHTDREVVIEHPSSGSDWSDVDELATVRFSQEEPVLLKHSAVPESSSFPTDYVMYPPHLYSSPWCDYASYWTSSHKTPGYPLVGSSSHDSAQTGKSSQDLLSVHSSKSTVNTQSISKDLDIAQESRSQNSHSLQFSRSTEEKEEVKGKRTFREETPPRYTREHTCSSLPRSHREMNLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSTSFPKEFQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNENQERKLLHALRHPKAVAFGEMGLDYSHKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYSVIEPLLKYFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARVKEESLSHTLAVLRENTSRLYSL", "length": 579, "header": "tr|A0A9J7H3K5-1|A0A9J7H3K5_CRIGR Computationally mapped isoform of Deoxyribonuclease TATDN2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tatdn2 PE=3 SV=1 CANONICAL=A0A9J7GF74-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74/entry#A0A9J7H4K5-1", "sequence": { "sequence": "MNSEFATEAEGQSDAMEEPNKFQKRKKDRLRDQGSTMIYLKAIQGILGKSMPKRKGEAATTRVKTSLGEYPSREGPTRNVEGPSRSREGPSVRSGEGLARSNEGPAKGIEGPARSIEGLARSVEGPARSREELVKSVEGPGEKVTVTVPQKEESPTKVRVKKKEESMLDRSSFCNRRVIIDSVKKSSEELLGDQRTVIDKPSPVLEFFDNSDSHADIQKHTDREVVIEHPSSGSDWSDVDELATVRFSQEEPVLLKHSAVPESSSFPTDYVMYPPHLYSSPWCDYASYWTSSHKTPGYPLVGSSSHDSAQTGKSSQDLLSVHSSKSTVNTQSISKDLDIAQESRSQNSHSLQFSRSTEEKEEVKGKRTFREETPPRYTREHTCSSLPRSHREMNLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSTSFPKEFQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNENQERKLLHALRHPKAVAFGEMGLDYSHKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYSVIEPLLKYFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARVKEESLSHTLAVLRENTSRLYSL", "length": 665, "header": "tr|A0A9J7H4K5-1|A0A9J7H4K5_CRIGR Computationally mapped isoform of Deoxyribonuclease TATDN2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tatdn2 PE=3 SV=1 CANONICAL=A0A9J7GF74-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H513-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74/entry#A0A9J7H513-1", "sequence": { "sequence": "MLTWNSVPRLIHIHSDPPTLAKCCDYRCVPLCLARVDSKDNSCHSMNSEFATEAEGQSDAMEEPNKFQKRKKDRLRDQGSTMIYLKAIQGILGKSMPKRKGEAATTRVKTSLGEYPSREGPTRNVEGPSRSREGPSVRSGEGLARSNEGPAKGIEGPARSIEGLARSVEGPARSREELVKSVEGPGEKVTVTVPQKEESPTKVRVKKKEESMLDRSSFCNRRVIIDSVKKSSEELLGDQRTVIDKPSPVLEFFDNSDSHADIQKHTDREVVIEHPSSGSDWSDVDELATVRFSQEEPVLLKHSAVPESSSFPTDYVMYPPHLYSSPWCDYASYWTSSHKTPGYPLVGSSSHDSAQTGKSSQDLLSVHSSKSTVNTQSISKDLDIAQESRSQNSHSLQFSRSTEEKEEVKGKRTFREETPPRYTREHTCSSLPRSHREMNLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSTSFPKEFQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNENQERKLLHALRHPKAVAFGEMGLDYSHKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYSVIEPLLKYFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARVKEESLSHTLAVLRENTSRLYSL", "length": 710, "header": "tr|A0A9J7H513-1|A0A9J7H513_CRIGR Computationally mapped isoform of Deoxyribonuclease TATDN2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tatdn2 PE=3 SV=1 CANONICAL=A0A9J7GF74-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity, acting on ester bonds", "id": "GO:0016788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016788", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 720, "end_pos": 722, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 720, "end_pos": 722 }, { "start_pos": 801, "end_pos": 803 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GF81-1", "uniprot_ac": "A0A9J7GF81", "uniprot_id": "A0A9J7GF81_CRIGR", "mass": { "chemical_mass": 12960.0, "monoisotopic_mass": 12960.0 }, "refseq": { "ac": "XP_027280622", "name": "LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280622" }, "gene_names": [ { "name": "LOC113836629", "type": "recommended", "evidence": [ { "id": "A0A9J7GF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF81" } ] }, { "name": "LOC113836629", "type": "synonym", "evidence": [ { "id": "XP_027280622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280622" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F-like", "type": "synonym", "evidence": [ { "id": "XP_027280622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280622" }, { "id": "A0A9J7GF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 21% of CDS bases internal stop codons :: corrected 3 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285025" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285025" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GFB3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GFB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759477", "url": "https://www.ncbi.nlm.nih.gov/gene/100759477", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759477", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759477", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GFB3", "url": "https://www.orthodb.org/?gene=A0A9J7GFB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28474", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28474", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28474:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28474:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285025", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLRGQFKSLAFYLLFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKEKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKRKAAPEVLAPTEQYTDPSSSTVSTTGSGNTEQTYTFHGALREGPGSFFNHMKSIMKGTKKPRVPQPQDTLMELALEPADSLAKKKQVHFEDSTVRIIPSITEGPGDSDSGPEETASDTTPIISSTRTPLFLPSLMGADLC", "length": 275, "header": "tr|A0A9J7GFB3-1|A0A9J7GFB3_CRIGR Isoform 1 of Transmembrane protein 72 OS=Cricetulus griseus OX=10029 GN=Tmem72 PE=4 SV=1 CANONICAL=A0A9J7GFB3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GFB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3/entry#A0A9J7GFB3-1", "sequence": { "sequence": "MKLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLRGQFKSLAFYLLFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKEKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKRKAAPEVLAPTEQYTDPSSSTVSTTGSGNTEQTYTFHGALREGPGSFFNHMKSIMKGTKKPRVPQPQDTLMELALEPADSLAKKKQVHFEDSTVRIIPSITEGPGDSDSGPEETASDTTPIISSTRTPLFLPSLMGADLC", "length": 275, "header": "tr|A0A9J7GFB3-1|A0A9J7GFB3_CRIGR Isoform 1 of Transmembrane protein 72 OS=Cricetulus griseus OX=10029 GN=Tmem72 PE=4 SV=1 CANONICAL=A0A9J7GFB3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFB3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759477", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759477", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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This record is derived from a genomic sequence (NW_003613643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007606717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007606717" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GH48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760837", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48", "locus": {} } ], "crossref": [ { "id": "A0A9J7GH48", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GH48", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760837", "url": "https://www.ncbi.nlm.nih.gov/gene/100760837", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760837", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760837", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QAMSDWC", "url": "https://omabrowser.org/oma/group/QAMSDWC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GFD4", "url": "https://www.orthodb.org/?gene=A0A9J7GFD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GH48", "url": "https://www.orthodb.org/?gene=A0A9J7GH48", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JYY0", "url": "https://www.orthodb.org/?gene=A0A9J7JYY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12398", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12398", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12398:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12398:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007606717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007606717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GFD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GH48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48-1", "database": 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"A0A9J7GFD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48/entry#A0A9J7GFD4-1", "sequence": { "sequence": "MEKPESLASVSGLKAESPRGVPRPVPGGVRGIQTDTALPSGVALFRGSGPPLHSGGTVIRSPGPVRPSEGVVTPSSGPSPQLGEAAGSSLGSSKSPGTGTGVMRAPTPGPGEPKGYSSDSSPLSGSTFLHSQNSEERPRSILKNSSSILMKKTSSGEKKSQRWDEMNILATYHPADKDYGFMKADEPSTPYHRPQDEEDLSAGSSLKVTPESLAERFATMDNFLPKVLQYGDNKSSRTADNFAKTYSATYRNQFPSASDSTTREHLNLHRKEYYSKGRYLRSCSHTEIGEDIEDEEQDSESWERQPGGGRTDRTSSLLGAPALISCYFQVLQV", "length": 333, "header": "tr|A0A9J7GFD4-1|A0A9J7GH48_CRIGR Computationally mapped isoform of Uncharacterized protein LOC100760837 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100760837 PE=3 SV=1 CANONICAL=A0A9J7GH48-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48/entry#A0A9J7GH48-1", "sequence": { "sequence": "MEKPESLASVSGLKAESPRGVPRPVPGGVRGIQTDTALPSGVALFRGSGPPLHSGGTVIRSPGPVRPSEGVVTPSSGPSPQLGEAAGSSLGSSKSPGTGTGVMRAPTPGPGEPKGYSSDSSPLSGSTFLHSQNSEERPRSILKNSSSILMKKTSSGEKKSQRWDEMNILATYHPADKDYGFMKADEPSTPYHRPQDEEDLSAGSSLKVTPESLAERFATMDNFLPKVLQYGDNKSSRTADNFAKTYSSDFDKQRKIHYSEGKFLKSQKNPLLANEDDSNGASASISGSNQSVMMDQKPRPLDKAWAGRLATGGKNEAVLVTDSHVLDTNDSATYRNQFPSASDSTTREHLNLHRKEYYSKGRYLRSCSHTEIGEDIEDEEQDSESWERQPGGGRTDRTSSLLGAPALISCYFQVLQV", "length": 417, "header": "tr|A0A9J7GH48-1|A0A9J7GH48_CRIGR Isoform 1 of Uncharacterized protein LOC100760837 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100760837 PE=3 SV=1 CANONICAL=A0A9J7GH48-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JYY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48/entry#A0A9J7JYY0-1", "sequence": { "sequence": "MEKPESLASVSGLKAESPRGVPRPVPGGVRGIQTDTALPSGVALFRGSGPPLHSGGTVIRSPGPVRPSEGVVTPSSGPSPQLGEAAGSSLGSSKSPGTGTGVMRAPTPGPGEPKGYSSDSSPLSGSTFLHSQNSEERPRSILKNSSSILMKKTSSGEKKSQRWDEMNILATYHPADKDYGFMKADEPSTPYHRPQDEEDLSAGSSLKVTPESLAERFATMDNFLPKVLQYGDNKSSRTADNFAKTYSSDFDKQRKIHYSEGKFLKSQKNPLLANEDDSNGASASISGSNQSVMMDQKPRPLDKAWAGRLATGGKNEAVLVTDSHVLDTNDSATYRNQFPSASDSTTREHLNLHRKEYYSKGRYLRSCSHTEIGEDIEDEEQDNEPFRLQWTGEKEPRPWKM", "length": 401, "header": "tr|A0A9J7JYY0-1|A0A9J7JYY0_CRIGR Computationally mapped isoform of Uncharacterized protein LOC100760837 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760837 PE=3 SV=1 CANONICAL=A0A9J7GH48-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 107, "start_aa": "Thr", "end_pos": 107, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr107", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760837", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760837", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1SFT7-1", "protein_name": "Protein phosphatase inhibitor 2", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEKQESLGAAGSLKGASPGGATRDALGGIGGVEGGAGLPPGVIMVHGSGPPAHPGGTAVLDSGLHQHPGEVAGHSHGSGTHPGGFSPPFPGTSVSGTSNLGSGGPGMYNSGSIPRPGSTCTHPDKPCEDRPRSILKNSSSIMMHKSPRAERRKSQHWDEMNILATYHPADKDYGFMKVDEPSTPYHRLQDSEEDLLAGTSYAMTPEELAERLATMDDFCPKVLLYSDHKSFGSSDNFSKTQPSDFEKRRKAHYNEGKYLKAQKNLPLDPNKGSHVGGLGVSSASRGVMLDPELRPAERSGAGGLTRGVKDEIGLVARNHILEAKGGRKSQIDLRDSSDSPAFRSQSQVSATPVTEKEMELQRKEYYRKGRYLRCSPHPELEEDTEDEQQSSSANLNWVIESPVGTEVRLLDHKRSPPQDHRAPENSVKVTVTPVKPGPAPPFKDSGSQAMSGWCQWLVSKGLNWQSAEGSERDAGRHPNLPSQDQHRHETLRLRWTQEEETRQWKT", "length": 506 }, "evidence": [ { "id": "A0A9J7GH48", "url": "https://omabrowser.org/oma/group/A0A9J7GH48/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F7F907-1", "protein_name": "Protein phosphatase 1, regulatory (inhibitor) subunit 2 like 1", "gene_name": "Ppp1r2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKPESLAPVSGLSTESPGGVPRAVPGGVRGIQTDTGLPSGVGSFRGPGSLLHSGNSVRSPGPTQPSEGAVTLNSGPGPYLREVASLGSSTSPATGTGATKASTPGPEEPKVYSSESSTHSGSSFTERPRSILKNSSSILIKKPSNSEKKSQRWDEMNILATYHPADKDYGFMKADEPRTPYHRLQDNDEDPSAESSLKVTPESVAERFATMDNFLPKVLQYGDNKNSKTTDNFTKTHSTDFDKHRKIHYSEGKYLKTPKNLPSATEEENTGAGASIGSSNQGVAVDLKSRPVEKGWAGRLATGVRKDGVSMADSYVLDTNDSATYKNQFPSASDSTVGELATLQRKEYYSKGRYLRSCSHPELGEDIEDEEQDISGSQVSSNCWAKGRRCRSPGSSEKEHGSNQNPPCWNGRRREPGPRQGSNSHCSGRQLAEVDENCGSSGLRKKNLDHGKCSHLGMG", "length": 460 }, "evidence": [ { "id": "A0A9J7GH48", "url": "https://omabrowser.org/oma/group/A0A9J7GH48/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GH48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GH48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 107 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 329, "end_pos": 331 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJW4-1", "uniprot_ac": "A0A9J7GJW4", "uniprot_id": "A0A9J7GJW4_CRIGR", "mass": { "chemical_mass": 39166.0, "monoisotopic_mass": 39166.0 }, "refseq": { "ac": "XP_016832961", "name": "RAD51-associated protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832961" }, "gene_names": [ { "name": "Rad51ap1", "type": "recommended", "evidence": [ { "id": "A0A9J7GJW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ] }, { "name": "Rad51ap1", "type": "synonym", "evidence": [ { "id": "XP_016832961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832961" } ] } ], "protein_names": [ { "name": "RAD51-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016832961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832961" }, { "id": "A0A9J7GJW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613610.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016832961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832961" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rad51ap1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772698", "url": "https://www.ncbi.nlm.nih.gov/gene/100772698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772698", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNPPAQV", "url": "https://omabrowser.org/oma/group/WNPPAQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M8V2", "url": "https://www.orthodb.org/?gene=A0A8C2M8V2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GJW4", "url": "https://www.orthodb.org/?gene=A0A9J7GJW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JZT3", "url": "https://www.orthodb.org/?gene=A0A9J7JZT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15361", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15361", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15361:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15361:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016832961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832961", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8V2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGGDSDDDFIAATMPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKSTDSQGDRKTEISDKSPPISNCSVTSVNSVCYWKQTKTTVYPEFSLTFLSPEDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 358, "header": "tr|A0A9J7GJW4-1|A0A9J7GJW4_CRIGR Isoform 1 of RAD51-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A8C2M8V2-1", "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGGDSDDDFIAATMPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKSTDSQGDRKTEISDKSPPISNCSVTSVNSDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 335, "header": "tr|A0A8C2M8V2-1|A0A8C2M8V2_CRIGR Computationally mapped isoform of RAD51-associated protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A9J7GFG2-1", "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGGDSDDDFIAATMPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKKDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 307, "header": "tr|A0A9J7GFG2-1|A0A9J7GJW4_CRIGR Computationally mapped isoform of RAD51-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A9J7GJW4-1", "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGGDSDDDFIAATMPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKSTDSQGDRKTEISDKSPPISNCSVTSVNSVCYWKQTKTTVYPEFSLTFLSPEDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 358, "header": "tr|A0A9J7GJW4-1|A0A9J7GJW4_CRIGR Isoform 1 of RAD51-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A9J7JQI3-1", "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGGDSDDDFIAATMPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKNLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 306, "header": "tr|A0A9J7JQI3-1|A0A9J7JQI3_CRIGR Computationally mapped isoform of RAD51-associated protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A9J7JZT3-1", "sequence": { "sequence": "MALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKSTDSQGDRKTEISDKSPPISNCSVTSVNSVCYWKQTKTTVYPEFSLTFLSPEDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 287, "header": "tr|A0A9J7JZT3-1|A0A9J7JZT3_CRIGR Computationally mapped isoform of RAD51-associated protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4/entry#A0A9J7KCF9-1", "sequence": { "sequence": "MPRNKKSKTMPKELKQDKPKPNLKNLQNEEILPAKVPKKRMALDDKVFQRGLEVALALSVKELPAVTNQVQNSQEKSTDSQGDRKTEISDKSPPISNCSVTSVNSVCYWKQTKTTVYPEFSLTFLSPEDLDKIVEEEDASSVEGEKKITSEAEAPQRRVLSEDSDGSSANDTEPDSATGEDSENDSNFDESEESDEDFSVRKNKVKETKKKAVQRKPAVEKEKKSKHKYEASVDVAPAAIKSGSLSLPQAVGLPSESTRKPAKMCSPSAEGKRPKWIPPAASGSRSSSSSPLAAASTKSPSQSLRLGLSRLAPVKRLHPNVTSSQVR", "length": 327, "header": "tr|A0A9J7KCF9-1|A0A9J7KCF9_CRIGR Computationally mapped isoform of RAD51-associated protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rad51ap1 PE=4 SV=1 CANONICAL=A0A9J7GJW4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFG2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFG2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772698", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K634-1", "protein_name": "RAD51 associated protein 1", "gene_name": "Rad51ap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRPTRNKKPVNYSQFEDSGNDSDDDFISASIPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKRMALDDKVFQRGLEVALALSVKELPTLTNQVKKPEERSTDTTGKRKTEKTDKPPRVSNCSVASDDVDLNKITEEGDVRDVEGERRTTSKARAQQRRKLSEGSSGSSADGTEPDSATGEDSESDPDFDESEESDEDFGVRRGKETKKKPVQKKPKAEKKERKSKPKREEASVTSADPAPAAIKSGSPALPQPVGLPSEATRKPAKICSPSAESKRPKWVPPARDGSVELDLTVCLCVLLQPPPGAETLAAAHGQEPPPGPRVRACVWASPD", "length": 339 }, "evidence": [ { "id": "A0A9J7GJW4", "url": "https://omabrowser.org/oma/group/A0A9J7GJW4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A286ZN93-1", "protein_name": "RAD51 associated protein 1", "gene_name": "RAD51AP1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTQKELKLEKPEPKLKNLQEKDIPLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTVKSPHISNCSVASDYLDLDKITEEGDSRGARGRRKAASQATVQQRKILLDGRDGNGDGDSDSEPDFATGDDSEDDSDFCESEDDEALTVRKSKVKEIKKQKVKVKSPVEKKEKKPKSRRAAVVTSVHSAPSAVKSESQPLPKKVSVSSEATEKPLQICSPSAESRRPKWVPPAASGSGSSSRPLAGVAVKSPSQSLRLGLSRLARVKPLHPSAASSCV", "length": 337 }, "evidence": [ { "id": "A0A9J7GJW4", "url": "https://omabrowser.org/oma/group/A0A9J7GJW4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8C551-1", "protein_name": "RAD51-associated protein 1", "gene_name": "Rad51ap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVRPTRNRKPINYSQFEDSGNDSDDDFISSSTPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKRVALDDKVFQRGLEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTENTGKPPRVSNCSVASDDVEDLDKITEEGDASSVEGERKSPSQAKAPRRRAPSEGSDGSSANDTESESATGEGSESDPDFDESKESDEDFGVRRSKESKKKTVQKKPAGEKKERKSKPKCEASVTSVDPAPAAIKSGSPSLPQAVGLPSEATRKPAIMCSPSAESKRPKWVPPAASGSRNSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSATSSQVR", "length": 337 }, "evidence": [ { "id": "A0A9J7GJW4", "url": "https://omabrowser.org/oma/group/A0A9J7GJW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96B01-1", "protein_name": "RAD51-associated protein 1", "gene_name": "RAD51AP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEIPVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQRKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVKSPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESKKPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST", "length": 352 }, "evidence": [ { "id": "A0A9J7GJW4", "url": "https://omabrowser.org/oma/group/A0A9J7GJW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "D-loop DNA binding", "id": "GO:0062037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062037", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "interstrand cross-link repair", "id": "GO:0036297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036297", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071479", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "positive regulation of reciprocal meiotic recombination", "id": "GO:0010845", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010845", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair via homologous recombination", "id": "GO:1905168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905168", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJW4" }, { "id": "PF15696", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15696" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAD51 interacting motif", "eco_id": "ECO_0000259", "start_pos": 314, "end_pos": 352, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 12, "end_pos": 14 }, { "start_pos": 201, "end_pos": 203 }, { "start_pos": 215, "end_pos": 217 }, { "start_pos": 351, "end_pos": 353 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284201" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836941", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GFK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GFK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836941", "url": "https://www.ncbi.nlm.nih.gov/gene/113836941", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836941", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836941", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR22745", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22745", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22745:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22745:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03247", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03247", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GFK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVEVTGVEGGYQGNRAGIWSGVSPLEPHPFPPPRPTRLSPEPSVSPFPLLVPSFLPPLSLSRPSLSSSYPHLSNLLFHPPPLSSPPRSRLPHPWEAPPVGQRRLKSGFPSRGRQRLVGGSSAGAGAASETERPRPERAGHRPHHPPARPPAAALRTAAALRVSARDPPRPTPRASAASCREPACRAAVAAAAAAATAPSSGRGHPPPSRALRLGPGPRLPASPGPGTMSEKSVEAAAELSAKDLKEKKEKVEEKAGRKERKKEVVEEEENGAEEEEEETAEDGEDDDEGDEEDEEEEEEEDEGPVRKRTAEEEDEADPKRQKTENGASA", "length": 330, "header": "tr|A0A9J7GFK0-1|A0A9J7GFK0_CRIGR Isoform 1 of Protein rpi-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113836941 PE=3 SV=1 CANONICAL=A0A9J7GFK0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GFK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFK0/entry#A0A9J7GFK0-1", "sequence": { "sequence": "MGVEVTGVEGGYQGNRAGIWSGVSPLEPHPFPPPRPTRLSPEPSVSPFPLLVPSFLPPLSLSRPSLSSSYPHLSNLLFHPPPLSSPPRSRLPHPWEAPPVGQRRLKSGFPSRGRQRLVGGSSAGAGAASETERPRPERAGHRPHHPPARPPAAALRTAAALRVSARDPPRPTPRASAASCREPACRAAVAAAAAAATAPSSGRGHPPPSRALRLGPGPRLPASPGPGTMSEKSVEAAAELSAKDLKEKKEKVEEKAGRKERKKEVVEEEENGAEEEEEETAEDGEDDDEGDEEDEEEEEEEDEGPVRKRTAEEEDEADPKRQKTENGASA", "length": 330, "header": "tr|A0A9J7GFK0-1|A0A9J7GFK0_CRIGR Isoform 1 of Protein rpi-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113836941 PE=3 SV=1 CANONICAL=A0A9J7GFK0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 172, "start_aa": "Thr", "end_pos": 172, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284229" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smarcd3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GFL0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GFL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17676", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17676", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768809", "url": "https://www.ncbi.nlm.nih.gov/gene/100768809", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768809", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768809", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GFL0", "url": "https://www.orthodb.org/?gene=A0A9J7GFL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13844", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13844", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284229", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LZ23", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZ23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LZ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZ23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQPQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDVRPGPGLSRCPGPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT", "length": 495, "header": "tr|A0A9J7GFL0-1|A0A9J7GFL0_CRIGR Isoform 1 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smarcd3 PE=3 SV=1 CANONICAL=A0A9J7GFL0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0/entry#A0A8C2LZ23-1", "sequence": { "sequence": "MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQPQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT", "length": 483, "header": "tr|A0A8C2LZ23-1|A0A8C2LZ23_CRIGR Computationally mapped isoform of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Smarcd3 PE=3 SV=1 CANONICAL=A0A9J7GFL0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFL0/entry#A0A9J7GFL0-1", "sequence": { "sequence": 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"name": "Inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5", "type": "synonym", "evidence": [ { "id": "A0A9J7GFQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFQ2/entry#names_and_taxonomy" } ] }, { "name": "inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5", "type": "synonym", "evidence": [ { "id": "XP_003501363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501363" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284593" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG10" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774512", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG10", "locus": {} } ], "crossref": [ { "id": "A0A9J7GG10", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GG10", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01428", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01428", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774512", "url": "https://www.ncbi.nlm.nih.gov/gene/100774512", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774512", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774512", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GG10", "url": "https://www.orthodb.org/?gene=A0A9J7GG10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00406", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00406", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284593", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GG10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MREDAQNFGLQHLSSGHFLRENLKASMQVGDTAKQYLQKGLLVPDHAITRLMVSELETRSTQHCLLDGFPRTLEQVEEEALDRICDLVINLNIPFETLKDLLSRRWIHPSSGSVYNLDFNLPQVLGVDDITGEPLVQQEDDKPEAVAAKLRQLKDAAKPVIELYKSQGVLHQFSGTETNKIWPYVYTLFSNRITPIRSKEAY", "length": 202, "header": "tr|A0A9J7GG10-1|A0A9J7GG10_CRIGR Isoform 1 of Adenylate kinase 4, mitochondrial OS=Cricetulus griseus OX=10029 GN=LOC100774512 PE=3 SV=1 CANONICAL=A0A9J7GG10-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GG10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG10/entry#A0A9J7GG10-1", "sequence": { "sequence": "MREDAQNFGLQHLSSGHFLRENLKASMQVGDTAKQYLQKGLLVPDHAITRLMVSELETRSTQHCLLDGFPRTLEQVEEEALDRICDLVINLNIPFETLKDLLSRRWIHPSSGSVYNLDFNLPQVLGVDDITGEPLVQQEDDKPEAVAAKLRQLKDAAKPVIELYKSQGVLHQFSGTETNKIWPYVYTLFSNRITPIRSKEAY", "length": 202, "header": "tr|A0A9J7GG10-1|A0A9J7GG10_CRIGR Isoform 1 of Adenylate kinase 4, mitochondrial OS=Cricetulus griseus OX=10029 GN=LOC100774512 PE=3 SV=1 CANONICAL=A0A9J7GG10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7GG70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70" } ] }, { "name": "Jade2", "type": "synonym", "evidence": [ { "id": "XP_027283390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283390" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase Jade-2 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027283390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283390" }, { "id": "A0A9J7GG70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283390", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283390" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Jade2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70", "locus": {} } ], "crossref": [ { "id": "A0A9J7GG70", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GG70", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15680", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15680", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758538", "url": "https://www.ncbi.nlm.nih.gov/gene/100758538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758538", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758538", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GG70", "url": "https://www.orthodb.org/?gene=A0A9J7GG70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793:SF84", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793:SF84", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13832", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13832", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283390", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MNT9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MNT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAPRPPAPAPGAPGFGSILPAPASAAARSRGQRPSGGHRGARAPSKHTSPPGSLVPSSWGGLGLAEQSTKQMEEKRRKYSISSDNSDTTDSHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLKGPPTQVSPDSPTLGEGAHPDWPGGSRYDLDEIDAYWLELLNSELKEMERPELDELTLERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCITAFHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRNEPTSEPVEPSQAIEDLEKVTLRKQRLQQLEENFYELVEPAEVAERLDLAEALVDFIYQYWKLKRRANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHTICKLQEQIFHLQMKLMEQDLCREPSGRRPKGKKSDSKRKGREGPKGSSPEKKEKVKAAPESVLGQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPLQDGPSARTTPDKPPKKPWAQDAGSGKGVQGPPTRKPPRRTSSHLPSSPAAGDCPVPAAMESPPPLASETLDETALMASDLNVQVPGPTVSPKPLGRLRPPREIKVSRKSPGARSDAETGLPSAVAERPKVSLHFDTEADGYFSDEEMSDSDIEAEDSGVQRASREAGAEEVVRMGVLAS", "length": 904, "header": "tr|A0A9J7GG70-1|A0A9J7GG70_CRIGR Isoform 1 of E3 ubiquitin-protein ligase Jade-2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Jade2 PE=3 SV=1 CANONICAL=A0A9J7GG70-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70/entry#A0A8C2MNT9-1", "sequence": { "sequence": "MEEKRRKYSISSDNSDTTDSHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLKGPPTQVSPDSPTLGEGAHPDWPGGSRYDLDEIDAYWLELLNSELKEMERPELDELTLERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCITAFHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRNEPTSEPVEPSQAIEDLEKVTLRKQRLQQLEENFYELVEPAEVAERLDLAEALVDFIYQYWKLKRRANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHTICKLQEQIFHLQMKLMEQDLCREPSGRRPKGKKSDSKRKGREGPKGSSPEKKEKVKAAPESVLGQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPLQDGPSARTTPDKPPKKPWAQDAGSGKGVQGPPTRKPPRRTSSHLPSSPAAGDCPVPAAMESPPPLASETLDETALMASDLNVQVPGPTVSPKPLGRLRPPREIKVSRKSPGARSDAETGLPSAVAERPKVSLHFDTEADGYFSDEEMSDSDIEAEDSGVQRASREAGAEEVVRMGVLAS", "length": 832, "header": "tr|A0A8C2MNT9-1|A0A8C2MNT9_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase Jade-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Jade2 PE=3 SV=1 CANONICAL=A0A9J7GG70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GG70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70/entry#A0A9J7GG70-1", "sequence": { "sequence": "MRAPRPPAPAPGAPGFGSILPAPASAAARSRGQRPSGGHRGARAPSKHTSPPGSLVPSSWGGLGLAEQSTKQMEEKRRKYSISSDNSDTTDSHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLKGPPTQVSPDSPTLGEGAHPDWPGGSRYDLDEIDAYWLELLNSELKEMERPELDELTLERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCITAFHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRNEPTSEPVEPSQAIEDLEKVTLRKQRLQQLEENFYELVEPAEVAERLDLAEALVDFIYQYWKLKRRANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHTICKLQEQIFHLQMKLMEQDLCREPSGRRPKGKKSDSKRKGREGPKGSSPEKKEKVKAAPESVLGQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPLQDGPSARTTPDKPPKKPWAQDAGSGKGVQGPPTRKPPRRTSSHLPSSPAAGDCPVPAAMESPPPLASETLDETALMASDLNVQVPGPTVSPKPLGRLRPPREIKVSRKSPGARSDAETGLPSAVAERPKVSLHFDTEADGYFSDEEMSDSDIEAEDSGVQRASREAGAEEVVRMGVLAS", "length": 904, "header": "tr|A0A9J7GG70-1|A0A9J7GG70_CRIGR Isoform 1 of E3 ubiquitin-protein ligase Jade-2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Jade2 PE=3 SV=1 CANONICAL=A0A9J7GG70-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KB68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70/entry#A0A9J7KB68-1", "sequence": { "sequence": "MEEKRRKYSISSDNSDTTDSHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLKGPPTQVSPDSPTLGEGAHPDWPGGSRYDLDEIDAYWLELLNSELKEMERPELDELTLERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCALWIPECSMPSCITAFHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRNEPTSEPVEPSQAIEDLEKVTLRKQRLQQLEENFYELVEPAEVAERLDLAEALVDFIYQYWKLKRRANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHTICKLQEQIFHLQMKLMEQDLCREPSGRRPKGKKSDSKRKGREGPKGSSPEKKEKVKAAPESVLGQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPLQDGPSARTTPDKPPKKPWAQDAGSGKGVQGPPTRKPPRRTSSHLPSSPAAGDCPVPAAMESPPPLASETLDETALMASDLNVQVPGPTVSPKPLGRLRPPREIKVSRKSPGARSDAETGLPSAVAERPKVSLHFDTEADGYFSDEEMSDSDIEAEDSGVQRASREAGAEEVVRMGVLAS", "length": 793, "header": "tr|A0A9J7KB68-1|A0A9J7KB68_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase Jade-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Jade2 PE=3 SV=1 CANONICAL=A0A9J7GG70-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 813, "start_aa": "Thr", "end_pos": 813, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr813", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG70" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": 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This record is derived from a genomic sequence (NW_003614613.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003508992.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508992" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smco2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGD4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755783", "url": "https://www.ncbi.nlm.nih.gov/gene/100755783", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755783", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755783", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GADHIGW", "url": "https://omabrowser.org/oma/group/GADHIGW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GG77", "url": "https://www.orthodb.org/?gene=A0A9J7GG77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GGD4", "url": "https://www.orthodb.org/?gene=A0A9J7GGD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22422:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22422:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508992", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GG77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIPDLLRGAEVMAVTPEMSLQMRTAVKGQQVTGKNNDLLQSVSVAEDVEEIVKMEQTSDRPDEKDEFPENPQTDSLHKVDSEEWDRLEQDSKHSQDPPINQDEQEATLVCADPRVSLSQFSETSTLAPPPEGSALKLRYWDAKMGLQMKELGADHDNWLERINNIIQRINNTESTVKSLLTEVISLENQSESLEDPDEEANIEEKITEIRKQLKEMNIKLAQVDACNEARELKEKLIERIESFYKEMNVLNAKLEIYNTQERETDSHSSEDLDTEQIESPLPEASPTPPGSHSPLYSAVWKHALKLFFMFYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWELREMVAPFLNLEAEDLLPS", "length": 366, "header": "tr|A0A9J7GGD4-1|A0A9J7GGD4_CRIGR Isoform 1 of Single-pass membrane and coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smco2 PE=4 SV=1 CANONICAL=A0A9J7GGD4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GG77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4/entry#A0A9J7GG77-1", "sequence": { "sequence": "MKIPDLLRGEIVKMEQTSDRPDEKDEFPENPQTDSLHKVDSEEWDRLEQDSKHSQDPPINQDEQEATLVCADPRVSLSQFSETSTLAPPPEGSALKLRYWDAKMGLQMKELGADHDNWLERINNIIQRINNTESTVKSLLTEVISLENQSESLEDPDEEANIEEKITEIRKQLKEMNIKLAQVDACNEARELKEKLIERIESFYKEMNVLNAKLEIYNTQERETDSHSSEDLDTEQIESPLPEASPTPPGSHSPLYSAVWKHALKLFFMFYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWELREMVAPFLNLEAEDLLPS", "length": 325, "header": "tr|A0A9J7GG77-1|A0A9J7GGD4_CRIGR Computationally mapped isoform of Single-pass membrane and coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smco2 PE=4 SV=1 CANONICAL=A0A9J7GGD4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4/entry#A0A9J7GGD4-1", "sequence": { "sequence": "MKIPDLLRGAEVMAVTPEMSLQMRTAVKGQQVTGKNNDLLQSVSVAEDVEEIVKMEQTSDRPDEKDEFPENPQTDSLHKVDSEEWDRLEQDSKHSQDPPINQDEQEATLVCADPRVSLSQFSETSTLAPPPEGSALKLRYWDAKMGLQMKELGADHDNWLERINNIIQRINNTESTVKSLLTEVISLENQSESLEDPDEEANIEEKITEIRKQLKEMNIKLAQVDACNEARELKEKLIERIESFYKEMNVLNAKLEIYNTQERETDSHSSEDLDTEQIESPLPEASPTPPGSHSPLYSAVWKHALKLFFMFYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWELREMVAPFLNLEAEDLLPS", "length": 366, "header": "tr|A0A9J7GGD4-1|A0A9J7GGD4_CRIGR Isoform 1 of Single-pass membrane and coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smco2 PE=4 SV=1 CANONICAL=A0A9J7GGD4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 288, "start_aa": "Thr", "end_pos": 288, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG77" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GG77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG77" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755783", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755783", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LJL6-1", "protein_name": "Single-pass membrane protein with coiled-coil domains 2", "gene_name": "Smco2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDANQSTDVSALTLATLSEDMTSLQMRTDGKEHQLTEESSDFLQNVSVTEGAKEVAEMDHISDRPDEKEKLSENLQTDVLYKMDTKKWDGLEEESQHREDPPSKQDEREVTPVCEVPQASPRPPSSDESTPIPDSLVVKLNYWHEKMGLQMKELGAHHVDWLERINNIIQNINSTESTVKSLLTEVISLENQSKNLEDPDQEADIEEKIVEIRRQLKEVNIKLNQVDACKEARELKEKLVERIESFHKEINVLNTKLEMHYKQGSETDSHSSEDVAMEHEEPFILEASPSPSGSPSPPCSAVWKHAVKLLVMVYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWDLREMMAPFLNLEAEDLLPS", "length": 368 }, "evidence": [ { "id": "A0A9J7GGD4", "url": "https://omabrowser.org/oma/group/A0A9J7GGD4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NFE2-1", "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 2", "gene_name": "SMCO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSENPQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELCLKGMFLKLNYWNTKIGLQVKELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS", "length": 343 }, "evidence": [ { "id": "A0A9J7GGD4", "url": "https://omabrowser.org/oma/group/A0A9J7GGD4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DA21-1", "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 2", "gene_name": "Smco2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMSLQLGTAGKERQLAEKSRDLQNVSMTEGSEEVSEMDHISDRPDEKDKPSENLQTDSLYKMDTEKWDGLEQESEHSQDPPSKPDEQEVTLVCEGPQVSQLSPSTDESTPIPESLTHKLNYWHAKMGLQMKELGADHGDWLERINNIIQNINNTESTVKSLLTEVISLENQSKNLEDSDQEADIEEKITEIRRQLKEVNIKLTQVDACEEARELKEKLVEQIESFHKEMNVLNSKLEMYYTQGSDADSHNSEDVDTEQEEPLVPEASPSLSASPTPPCSAVWKNALKLFVIVYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWDLREMMAPFLNLEAEDLLPS", "length": 347 }, "evidence": [ { "id": "A0A9J7GGD4", "url": "https://omabrowser.org/oma/group/A0A9J7GGD4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 288 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 171, "end_pos": 173 }, { "start_pos": 189, "end_pos": 191 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGB2-1", "uniprot_ac": "A0A9J7GGB2", "uniprot_id": "A0A9J7GGB2_CRIGR", "mass": { "chemical_mass": 70651.0, "monoisotopic_mass": 70651.0 }, "refseq": { "ac": "XP_027285991", "name": "lamin tail domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285991" }, "gene_names": [ { "name": "Lmntd1", "type": "recommended", "evidence": [ { "id": "A0A9J7GGB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ] }, { "name": "Lmntd1", "type": "synonym", "evidence": [ { "id": "XP_027285991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285991" } ] } ], "protein_names": [ { "name": "Lamin tail domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GGB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2/entry#names_and_taxonomy" } ] }, { "name": "lamin tail domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027285991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285991" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 42% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285991" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lmntd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGB2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGB2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764631", "url": "https://www.ncbi.nlm.nih.gov/gene/100764631", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764631", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764631", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGB2", "url": "https://www.orthodb.org/?gene=A0A9J7GGB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47012:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47012:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00932", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00932", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285991", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METKNTVKALTSDFEINKQETKMHLEETREEKLGNLTPAKQPSSVHFFPEIIDLEATPMQLSTSTSQNIPFNLPQVTNAQNSGLTLSSAGPLTSKSTLLSIPRGDASLSKQSSSFLITKKQPLLSFDSETFVLGEGEDYFLSLFGDSRKLNAHSSQTEDMTKHLSVILEEVGQFTSSFLEDIKIAEVNVKGLFVRLMNSSTDKETEIGNHILQQNVNGQAVSLYRFPPNIIMHASSTVTVWAAASEAKPQPPTDFVWEEQIRFRSSPDCTTILCKPHGEAIAWYTPIHWKQAWEKLETDIEFDRCSVVIPTLKKRMFGQRTASMSSINKEKQEPAKEPSQCRIDHIYPALPKEKEILPSTLPTRSPWCCNPHTSPHPYCSLIEPHDPDTSEKRLDTQLKSRPAKLASAPGTRDNPDHETQTGSAQCVAATRVIPTWVAYAATKTMVTSKYKLRLRATSGSMVLLQVGPVLTSVVYVAGYEKQISITLSDRPPALGEGRAMLLQSPLRNNGDRVGTSFVVWGTERKCAAGPSKAPPGLPAVKAELRPDIAKESLADGFRHTQLDVEMSLFSGQTGIIGLPSPCQLEGKTTASDMQVGVAGTAVNFVVPAPSREPLLSNAEVTFSKDVSGRVQDHVAQGSSVQNVPT", "length": 645, "header": "tr|A0A9J7GGB2-1|A0A9J7GGB2_CRIGR Isoform 1 of Lamin tail domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lmntd1 PE=4 SV=1 CANONICAL=A0A9J7GGB2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2/entry#A0A9J7GGB2-1", "sequence": { "sequence": "METKNTVKALTSDFEINKQETKMHLEETREEKLGNLTPAKQPSSVHFFPEIIDLEATPMQLSTSTSQNIPFNLPQVTNAQNSGLTLSSAGPLTSKSTLLSIPRGDASLSKQSSSFLITKKQPLLSFDSETFVLGEGEDYFLSLFGDSRKLNAHSSQTEDMTKHLSVILEEVGQFTSSFLEDIKIAEVNVKGLFVRLMNSSTDKETEIGNHILQQNVNGQAVSLYRFPPNIIMHASSTVTVWAAASEAKPQPPTDFVWEEQIRFRSSPDCTTILCKPHGEAIAWYTPIHWKQAWEKLETDIEFDRCSVVIPTLKKRMFGQRTASMSSINKEKQEPAKEPSQCRIDHIYPALPKEKEILPSTLPTRSPWCCNPHTSPHPYCSLIEPHDPDTSEKRLDTQLKSRPAKLASAPGTRDNPDHETQTGSAQCVAATRVIPTWVAYAATKTMVTSKYKLRLRATSGSMVLLQVGPVLTSVVYVAGYEKQISITLSDRPPALGEGRAMLLQSPLRNNGDRVGTSFVVWGTERKCAAGPSKAPPGLPAVKAELRPDIAKESLADGFRHTQLDVEMSLFSGQTGIIGLPSPCQLEGKTTASDMQVGVAGTAVNFVVPAPSREPLLSNAEVTFSKDVSGRVQDHVAQGSSVQNVPT", "length": 645, "header": "tr|A0A9J7GGB2-1|A0A9J7GGB2_CRIGR Isoform 1 of Lamin tail domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lmntd1 PE=4 SV=1 CANONICAL=A0A9J7GGB2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764631", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764631", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB2" }, { "id": "PS51841", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51841" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LTD", "eco_id": "ECO_0000259", "start_pos": 170, "end_pos": 288, "start_aa": "Glu", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 198, "end_pos": 200 }, { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGI5-1", "uniprot_ac": "A0A9J7GGI5", "uniprot_id": "A0A9J7GGI5_CRIGR", "mass": { "chemical_mass": 96077.0, "monoisotopic_mass": 96077.0 }, "refseq": { "ac": "XP_003510695", "name": "interleukin-12 receptor subunit beta-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510695" }, "gene_names": [ { "name": "Il12rb2", "type": "recommended", "evidence": [ { "id": "A0A9J7GGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5" } ] }, { "name": "Il12rb2", "type": "synonym", "evidence": [ { "id": "XP_003510695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510695" } ] } ], "protein_names": [ { "name": "Interleukin-12 receptor subunit beta-2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5/entry#names_and_taxonomy" } ] }, { "name": "interleukin-12 receptor subunit beta-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003510695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510695" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614925.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510695", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510695" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Il12rb2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758602", "url": "https://www.ncbi.nlm.nih.gov/gene/100758602", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758602", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758602", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGB9", "url": "https://www.orthodb.org/?gene=A0A9J7GGB9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GGI5", "url": "https://www.orthodb.org/?gene=A0A9J7GGI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510695", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510695", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHSVRECLLGLIFLFMWLLIKANIDACKKGTVTVKPSPVIPLGSAVNISCSLNPKQGCLNNPGPNKLVLLKDDKIVHFHLGNSFTLQVTNLSLGMTLLVCKLDCSSGRYPVCGTEISVGVAPEPPRNLSCIQKGEHGTVTCTWDPGQDRHLKTHYTLQLTGPNNVTCQDQCRCQNCNHLNLGISLTSDLAESKFTVSVTATNGLGNSSSLPFMFTFLDIVRPLPPWDIRIDFLNASGNRCALRWKDEGQVVLNRLRYRPFNSGSWNMVNATNAKGRYGLQDLTPFTEYEFQISSKLHLSKGSWSDWSESLTTRTPEEEPVGTLDIWYMKQNISCNRQQISLFWKSLSPSEARGEILHYQVTLWEVTRKIILQNITEHTSWTGVIPRMGAWTASVSAANSKGTSAATLMNIVDLCGTGLLAPYWVSAKSGNMDNILVTWQPPRKAVSAVREYIVEWRALQPGSIMTFPPHWLRIPPYNMSALISENISPYVCYEIRVHALSEDQGGCSSILGDSKHKALLTGPHITAIEEKKASLFISWSHIPVQEWMGCLLHYRIYWKERDSTAQPQLCEIPYRHSQNSYPISSLQPEVTYVLWMTALTAAGESPKGNEREFCLQGKANWKAFVASSICIAIITVGIFSIRPFRQKVFAFLSTLRPQWYCRTIPDPANSTWVKKYPIVEEKTQLPMDCLPMAWPIPEEPEPLIINEVLYQMAPVFRQPYCPKRGQGFQGHSTPKEDTIYISSSPQPTGTLTADTRQLVNLYKVLGSREPDSKLGNLTSSLTVTAVDYLPSHEGYLPSNIRDFPSQEDSPPDSLELEHQRISLSIFASNSLRPLTFCGERLTLDQLKMGYDSLMSNES", "length": 858, "header": "tr|A0A9J7GGI5-1|A0A9J7GGI5_CRIGR Isoform 1 of Interleukin-12 receptor subunit beta-2 isoform X1 OS=Cricetulus 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772, "header": "tr|A0A9J7GGB9-1|A0A9J7GGI5_CRIGR Computationally mapped isoform of Interleukin-12 receptor subunit beta-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Il12rb2 PE=3 SV=1 CANONICAL=A0A9J7GGI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGI5/entry#A0A9J7GGI5-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283472" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771979", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC3", "locus": {} } ], "crossref": [ { "id": "cd04104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771979", "url": "https://www.ncbi.nlm.nih.gov/gene/100771979", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771979", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771979", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGC3", "url": "https://www.orthodb.org/?gene=A0A9J7GGC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWASSIDAFFKNFKRESQILSEETITLIKSHIQKNDLQGALSAIHSALRDIESAPLNIAVTGETGTGKSTFINALMGIGQEDEGAAPTGVTETTKERMPYPHPKLPQVTIWDLPGTGSTSFPPESYLKTMKFSEYDFFVIISASRFKENDAQLAKAIAMMKMNFYFVRTKIDNDLANEQRSKPKAFNEENVLKRIRDDCSKHLKKVLSREPQIFLVSNFDVSDYDFPKLQTTLLGELPAHKRHVFMLSLNSVTEATINLKRDSLKQKVFLEALKAGALATIPLVGMIRDELQDLNETFNLYRSYFGLDDASLENIAKDFNMSMDELKVHLRFPNLFAEDSNVSLGKKLLNYIELISSITGGPFAVRFYYRKTYYLQNLFLETAANDAIALLNREALFEEKMGPYISKAPDYWE", "length": 414, "header": "tr|A0A9J7GGC3-1|A0A9J7GGC3_CRIGR Isoform 1 of T-cell-specific guanine nucleotide triphosphate-binding protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100771979 PE=3 SV=1 CANONICAL=A0A9J7GGC3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC3/entry#A0A9J7GGC3-1", "sequence": { "sequence": "MAWASSIDAFFKNFKRESQILSEETITLIKSHIQKNDLQGALSAIHSALRDIESAPLNIAVTGETGTGKSTFINALMGIGQEDEGAAPTGVTETTKERMPYPHPKLPQVTIWDLPGTGSTSFPPESYLKTMKFSEYDFFVIISASRFKENDAQLAKAIAMMKMNFYFVRTKIDNDLANEQRSKPKAFNEENVLKRIRDDCSKHLKKVLSREPQIFLVSNFDVSDYDFPKLQTTLLGELPAHKRHVFMLSLNSVTEATINLKRDSLKQKVFLEALKAGALATIPLVGMIRDELQDLNETFNLYRSYFGLDDASLENIAKDFNMSMDELKVHLRFPNLFAEDSNVSLGKKLLNYIELISSITGGPFAVRFYYRKTYYLQNLFLETAANDAIALLNREALFEEKMGPYISKAPDYWE", "length": 414, "header": "tr|A0A9J7GGC3-1|A0A9J7GGC3_CRIGR Isoform 1 of T-cell-specific guanine nucleotide triphosphate-binding protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100771979 PE=3 SV=1 CANONICAL=A0A9J7GGC3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027283579.1. 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"MSPGTPGKEMEASGSSSQSEEASGIHRETENLNYSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 191, "header": "tr|A0A9J7GGH1-1|A0A9J7GI67_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI67-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7GI67-1", "sequence": { "sequence": "MSPGTPGKEMEASGSSSQSEEASGIHRETENLNYQETEFHKQDGKARERCERDKSSSSSSSSSSSSSSSSSSSSSDSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 233, "header": "tr|A0A9J7GI67-1|A0A9J7GI67_CRIGR Isoform 1 of Transmembrane protein 40 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7GKT9-1", "sequence": { "sequence": "MEASGSSSQSEEASGIHRETENLNYQETEFHKQDGKARERCERDKSSSSSSSSSSSSSSSSSSSSSDSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 224, "header": "tr|A0A9J7GKT9-1|A0A9J7GKT9_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7H4M6-1", "sequence": { "sequence": "MMEKGKEMEASGSSSQSEEASGIHRETENLNYSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 189, "header": "tr|A0A9J7H4M6-1|A0A9J7H4M6_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X6 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7H6S5-1", "sequence": { "sequence": "MMEKGKEMEASGSSSQSEEASGIHRETENLNYQETEFHKQDGKARERCERDKSSSSSSSSSSSSSSSSSSSSSDSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 231, "header": "tr|A0A9J7H6S5-1|A0A9J7H6S5_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7JQX4-1", "sequence": { "sequence": "MEASGSSSQSEEASGIHRETENLNYSSDEDQHPRGPREHRRKPHRDSSPGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 182, "header": "tr|A0A9J7JQX4-1|A0A9J7JQX4_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JX03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI67/entry#A0A9J7JX03-1", "sequence": { "sequence": "MSPGTPGKEMEASGSSSQSEEASGIHRETENLNYQETEFHKQDGKARERCERDKSSSSSSSSSSSSSSSSSSSSSGADHGELEVLRDDLQLYGGDSGEMVLAGESGLRRRGSGSTGGEMEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTD", "length": 208, "header": "tr|A0A9J7JX03-1|A0A9J7JX03_CRIGR Computationally mapped isoform of Transmembrane protein 40 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem40 PE=4 SV=1 CANONICAL=A0A9J7GI67-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769883", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGH4-1", "uniprot_ac": "A0A9J7GGH4", "uniprot_id": "A0A9J7GGH4_CRIGR", "mass": { "chemical_mass": 27814.0, "monoisotopic_mass": 27814.0 }, "refseq": { "ac": "XP_007650018", "name": "uncharacterized protein C17orf50 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650018" }, "gene_names": [ { "name": "CUNH17orf50", "type": "recommended", "evidence": [ { "id": "A0A9J7GGH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4" } ] }, { "name": "CUNH17orf50", "type": "synonym", "evidence": [ { "id": "XP_007650018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650018" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C17orf50 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7GGH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C17orf50 homolog", "type": "synonym", "evidence": [ { "id": "XP_007650018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650018" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615071.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650018", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650018" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH17orf50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774515", "url": "https://www.ncbi.nlm.nih.gov/gene/100774515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774515", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774515", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGH4", "url": "https://www.orthodb.org/?gene=A0A9J7GGH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37878", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37878", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37878:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37878:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15470", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15470", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007650018", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650018", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGGSEVTCLESLARKLRRAGTPQQSGNLGLRSPLAGSIWPAASPPRMLDSGSCSKLPGQRAALTPSPPVGVKTPLWKKEVEEPEAREEELEDESSSSSSSSEVERPDPESAAEVEEDARDAEEREARSVSYCPLRQESSSQQVALLRRSDSSFWGWLSPFALLGGLAGPADRKRGAPEEPCVLETRRRPPRRGGCARCEILFCKKCKSLHSHPTYIEHCILEHPDPGSAEAAGSSELIHSQPLRPQCSKLFYL", "length": 255, "header": "tr|A0A9J7GGH4-1|A0A9J7GGH4_CRIGR Isoform 1 of Uncharacterized protein C17orf50 homolog OS=Cricetulus griseus OX=10029 GN=CUNH17orf50 PE=4 SV=1 CANONICAL=A0A9J7GGH4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4/entry#A0A9J7GGH4-1", "sequence": { "sequence": "MELGGSEVTCLESLARKLRRAGTPQQSGNLGLRSPLAGSIWPAASPPRMLDSGSCSKLPGQRAALTPSPPVGVKTPLWKKEVEEPEAREEELEDESSSSSSSSEVERPDPESAAEVEEDARDAEEREARSVSYCPLRQESSSQQVALLRRSDSSFWGWLSPFALLGGLAGPADRKRGAPEEPCVLETRRRPPRRGGCARCEILFCKKCKSLHSHPTYIEHCILEHPDPGSAEAAGSSELIHSQPLRPQCSKLFYL", "length": 255, "header": "tr|A0A9J7GGH4-1|A0A9J7GGH4_CRIGR Isoform 1 of Uncharacterized protein C17orf50 homolog OS=Cricetulus griseus OX=10029 GN=CUNH17orf50 PE=4 SV=1 CANONICAL=A0A9J7GGH4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774515", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774515", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGH4" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 225, "start_aa": "Ala", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"monoisotopic_mass": 133164.0 }, "refseq": { "ac": "XP_027285747", "name": "pleckstrin homology domain-containing family A member 5 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285747" }, "gene_names": [ { "name": "Plekha5", "type": "recommended", "evidence": [ { "id": "A0A9J7GJ45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ] }, { "name": "Plekha5", "type": "synonym", "evidence": [ { "id": "XP_027285747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285747" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family A member 5 isoform X8", "type": "synonym", "evidence": [ { "id": "A0A9J7GJ45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family A member 5 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027285747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285747" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285747", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285747" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekha5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJ45", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJ45", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] 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"PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25541", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25541", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285747", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285747", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ31", 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}, { "id": "A0A9J7KC74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1179, "header": "tr|A0A9J7GJ45-1|A0A9J7GJ45_CRIGR Isoform 1 of Pleckstrin homology domain-containing family A member 5 isoform X8 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7GGK6-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETGLAGSKPFSAVKYKSEGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1115, "header": "tr|A0A9J7GGK6-1|A0A9J7GJ45_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X8 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7GHE5-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1178, "header": "tr|A0A9J7GHE5-1|A0A9J7GHE5_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X9 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJ31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7GJ31-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1116, "header": "tr|A0A9J7GJ31-1|A0A9J7GJ31_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X12 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7GJ45-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1179, "header": "tr|A0A9J7GJ45-1|A0A9J7GJ45_CRIGR Isoform 1 of Pleckstrin homology domain-containing family A member 5 isoform X8 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GLP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7GLP0-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKICTSVSNTPSA", "length": 249, "header": "tr|A0A9J7GLP0-1|A0A9J7GLP0_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X18 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7H2G6-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKLLYDFVC", "length": 245, "header": "tr|A0A9J7H2G6-1|A0A9J7H2G6_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X19 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7H3J8-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTCEFSDTIYRREQRYFCDKYPAAEECRFIAILMPFWLPFPKCPNKGESLQFTI", "length": 669, "header": "tr|A0A9J7H3J8-1|A0A9J7H3J8_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X17 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H440-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7H440-1", "sequence": { "sequence": "MRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 936, "header": "tr|A0A9J7H440-1|A0A9J7H440_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X16 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7H5M0-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTAALTSLESTQS", "length": 1159, "header": "tr|A0A9J7H5M0-1|A0A9J7H5M0_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X10 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H746-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7H746-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINEALYYRHKKSKWGLERWLSLRALTALPEDLGSIPSTHMAAHNCNSSSRASETFTPMHIK", "length": 136, "header": "tr|A0A9J7H746-1|A0A9J7H746_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X20 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K101-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7K101-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1151, "header": "tr|A0A9J7K101-1|A0A9J7K101_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X11 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7KAL5-1", "sequence": { "sequence": "MTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSPQEEAEMTNHQAEDHPEEAQSLHEEEGTLASLESPPEIPRENQTTVKSLSPSPESSASPAPPTPPKLTEGSHFMCV", "length": 1070, "header": "tr|A0A9J7KAL5-1|A0A9J7KAL5_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X15 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7KC23-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTAATMTSDEKKERPISLINEASNYSMASDYTVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKITAEGASTKETNNIPNHRVLIKPELQNNQKNKEISKIEEKRALEAEKYGFQKDGQERPLTKINSVKLNSVPSEYEGGPACPPPNVLYRPVNVNSSDGKTGNVSLADARGGSHPRAGPLATEADRVIQRTNSMQQLEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQVVARYPEGYRTLPRNSKTRPDSICSVTPSGHEKTGPGTTEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHSCLGSPKQPLVKVSDQTMYSIPTSPSHGSVAAYPAFSPQRTYRSEVSSPIQRGDITVDRRHRAHHPKHAYVPDRRSMPAGLALPAVSPQSLQGRTLSQDECRSTLYKYRPEEVDIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLEQALLSASQEIEMNADNPAAIQSVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRNQMQEQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETVGLAGSKPFSAVKYKSEEEEVVPPRPPLPRSYDFTEQPPIIPPLLSDSSSLLCYSRGPVRLPEEKKLHQVQGYPRNGSHSGPDYRLYKSEPELTTVAEVDESNGEEKSEPASETEAPVVKGSHFPVGVPLRTRSPTPESSTIASYVTLRKTKKVELRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGLNVISASDQSPFQSPSSVRDNPVTVTQTLRRAESVKELDPEHRENDVKLDPETAAAEAVLLEDAGPQKADLGRKLKRTESIFYEMLFTPEPNGMSSEGVMDTEKHKDQTLEDVTCSCTDVS", "length": 1108, "header": "tr|A0A9J7KC23-1|A0A9J7KC23_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X14 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45/entry#A0A9J7KC74-1", "sequence": { "sequence": "MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYIKVSPYRPSWSRTHRDRPAFPS", "length": 97, "header": "tr|A0A9J7KC74-1|A0A9J7KC74_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 5 isoform X21 OS=Cricetulus griseus OX=10029 GN=Plekha5 PE=4 SV=1 CANONICAL=A0A9J7GJ45-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1166, "start_aa": "Thr", "end_pos": 1166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1166", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766035", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766035", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "phosphatidylinositol-5-phosphate binding", "id": "GO:0010314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010314", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,5-bisphosphate binding", "id": "GO:0080025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080025", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "pmid": "" }, { "name": "phosphatidylinositol-4-phosphate binding", "id": "GO:0070273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070273", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "pmid": "" }, { "name": "phosphatidylinositol-3-phosphate binding", "id": "GO:0032266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032266", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ45" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285057" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd30a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6", "locus": {} } ], "crossref": [ { "id": "100769687", "url": "https://www.ncbi.nlm.nih.gov/gene/100769687", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285057", "database": "RefSeq", "categories": [ "Protein" ] }, { 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"MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEDVSYIPSCMSGSRNFKMAKLEESRNVGIPVAHKEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDRLFLSSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISVNMLINKIDDLTTKLESASSKCLHLGKKNQVLQQELLLMKSIQKKCVKLEKHKKRLEEEVDRLRSHMEKHMVEHSQLQQYQREVEERARQDLVEKLKQVNLFLQAQAASQENLEQLRENSNASVRTQMELRIKDLESQLSRMKTQEDFDKIELEKYKQLYQEEFQVRKLLSSKLSKTNERLEEASTKLHLEEQQNRSLLSSLSTRPVVECPCVGSLHNSLVFNRALIPRENIVIPTSSLQPSNKRMEIYLTKMHQELEKSINRELKEAAAELESEFCRVSPLGSATKPSQDLLSEASQEYIDILKKKYTIC", "length": 1699, "header": "tr|A0A9J7GGL6-1|A0A9J7GGL6_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 30A isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6/entry#A0A9J7GGL2-1", "sequence": { "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDRLFLSSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISVNMLINKIDDLTTKLESASSKCLHLGKKNQVLQQELLLMKSIQKKCVKLEKHKKRLEEEVDRLRSHMEKHMVEHSQLQQYQREVEERARQDLVEKLKQVNLFLQAQAASQENLEQLRENSNASVRTQMELRIKDLESQLSRMKTQEDFDKIELEKYKQLYQEEFQVRKLLSSKLSKTNERLEEASTKLHLEEQQNRSLLSSLSTRPVVECPCVGSLHNSLVFNRALIPRENIVIPTSSLQPSNKRMEIYLTKMHQELEKSINRELKEAAAELESEFCRVSPLGSATKPSQDLLSEASQEYIDILKKKYTIC", "length": 1666, "header": "tr|A0A9J7GGL2-1|A0A9J7GGL6_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 30A isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6/entry#A0A9J7GGL6-1", "sequence": { "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEDVSYIPSCMSGSRNFKMAKLEESRNVGIPVAHKEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDRLFLSSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISVNMLINKIDDLTTKLESASSKCLHLGKKNQVLQQELLLMKSIQKKCVKLEKHKKRLEEEVDRLRSHMEKHMVEHSQLQQYQREVEERARQDLVEKLKQVNLFLQAQAASQENLEQLRENSNASVRTQMELRIKDLESQLSRMKTQEDFDKIELEKYKQLYQEEFQVRKLLSSKLSKTNERLEEASTKLHLEEQQNRSLLSSLSTRPVVECPCVGSLHNSLVFNRALIPRENIVIPTSSLQPSNKRMEIYLTKMHQELEKSINRELKEAAAELESEFCRVSPLGSATKPSQDLLSEASQEYIDILKKKYTIC", "length": 1699, "header": "tr|A0A9J7GGL6-1|A0A9J7GGL6_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 30A isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6/entry#A0A9J7H7B2-1", "sequence": { "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEDVSYIPSCMSGSRNFKMAKLEESRNVGIPVAHKEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISVNMLINKIDDLTTKLESASSKCLHLGKKNQVLQQELLLMKSIQKKCVKLEKHKKRLEEEVDRLRSHMEKHMVEHSQLQQYQREVEERARQDLVEKLKQVNLFLQAQAASQENLEQLRENSNASVRTQMELRIKDLESQLSRMKTQEDFDKIELEKYKQLYQEEFQVRKLLSSKLSKTNERLEEASTKLHLEEQQNRSLLSSLSTRPVVECPCVGSLHNSLVFNRALIPRENIVIPTSSLQPSNKRMEIYLTKMHQELEKSINRELKEAAAELESEFCRVSPLGSATKPSQDLLSEASQEYIDILKKKYTIC", "length": 1694, "header": "tr|A0A9J7H7B2-1|A0A9J7H7B2_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 30A isoform X2 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6/entry#A0A9J7JQY7-1", "sequence": { "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEDVSYIPSCMSGSRNFKMAKLEESRNVGIPVAHKEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDRLFLSSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISD", "length": 1389, "header": "tr|A0A9J7JQY7-1|A0A9J7JQY7_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 30A isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JX23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6/entry#A0A9J7JX23-1", "sequence": { "sequence": "MKKIFGFRSKGPSPLGPSARPRSNCVGFGREGASGSLTPRYHIHDKDMGKIHKAASAGDVAKVQHILILGKSGVNDRDKKDRTALHLACAYGHPEVVTLLVERKCEIDARDGENSTALIKAVQCQEEECATILLEHGADPNVMDSSGNTALHYAVCSENTSIAARLLAHNANTEAKNKDDLTPLLLAVKEKKQHIVEFLVKKKASIHAVDQLGSNRQIFEYDGRRLKSSENSNPVDNGSEDESLTRSSNTPDPADSWPTSDEDEYNFDSKNVPKINLTELWAAAQQSKKNQTKCGFENLENRILFDNSNSNSEIEDAVEIGPGTSARVQTSSLSCQSPDPMEGATEPATGREENGADAVENVSQENGADAVERASQEQPNGDNLTCAGGWHRSNKSEMMSALGLGEDEEEESPWDSESISDSVSLKGVGHLSGTADQTGETKVHGQDEDVSYIPSCMSGSRNFKMAKLEESRNVGIPVAHKEALRKYPVMEPTIKRMDPVLYKTVGMKDVPTFKSEPDIEIVPREEQRRLSSSEDSQRQVEEKRNYKTSEAKVSGSLCDGSVDSVGNGVNQQSGKTDNQQLPLKRHEERDRLFLSSGPALLMKEVKKKESEKRVPRESVLMPVTEEAGSPPGGSSQMQDGSSLSDTDHSEMRPIKKTSNKNNKVRKQVAAVDDLDDLNESSETASEDCELQCPDYESVLCEIEHLRMECRDIVSLLKIRDAVYSYKRLIEFKKSHCELLTGKLKRMENKFKESQKEISETKEVRSQLEHEKVEWEQELSNLRFALKQEEEKRRSADQLSEKTMDQLRRKDEQYQNEVDEKQQLEVSLRTLDMELKTVRNHLNQVLEERNEIQRQLSREQNARMLQDGILANHLSKQKEIEMAQKKMTSEVSVSQEKEKDLLHKNQRLQDEIAMLRLEMDTVKTHSQEKEKKYLEDIKTANEKSDKLQRMIKLNEETFTKTIFQYNGQINNLTTENTMLSSKLENEKQNKERLETDIESFRSRLASAMHDHAEIQTSKRDLEIAFQRARDEWVRLQDKMNFDMSNLRDNNEILSQQLSKTEKKLNSLEIEFHHTKDALREKTLALKHVQRDLNQTQCQMKEVEHMYQDEQGKVNKYMGKQESIEERLSQLQSENMLLRQQLDDASNKADSKDKTIVDIQDQFHDMLSRLQAESQKHRLLLEDRNKELVSECSHLKERMCQYENEKAEREVIVRQLQQELADTLKKQSMSEASLEVSSRYRSNLEDEARDLKKKLGQIRNQLQEAQDQHREAVQRAEKTQDHLQKLELENSNFKITIQKQTEEIEQLQENLSSVNLSEEDKEKLKKLAELKESLEYTLDQEQKKNDALEKELTEFKELLQMTKKELNEHENRELNHNQDSKNSQFEMDISVNMLINKIDDLTTKLESASSKCLHLGKKNQVLQQELLLMKSIQKKCVKLEKHKKRLEEEVDRLRSHMEKHMVEHSQLQQYQREVEERARQDLVEKLKQVNLFLQAQAASQENLEQLRENSNASVRTQMELRIKDLESQLSRMKTQEDFDKIELEKYKQLYQEEFQVRKLLSSKLSKTNERLEEASTKLHLEEQQNRSLLSSLSTRPVVECPCVGSLHNSLVFNRALIPRENIVIPTSSLQPSNKRMEIYLTKMHQELEKSINRELKEGMPTDGVLQMLWR", "length": 1668, "header": "tr|A0A9J7JX23-1|A0A9J7JX23_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 30A isoform X3 OS=Cricetulus griseus OX=10029 GN=Ankrd30a PE=4 SV=1 CANONICAL=A0A9J7GGL6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769687", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769687", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1092, "end_pos": 1094, "annotation": "n_glycosylation_sequon" }, { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1308, "end_pos": 1310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1313, "end_pos": 1315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1509, "end_pos": 1511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1583, "end_pos": 1585, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 970, "end_pos": 972, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6" }, { "id": "PF14915", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC144C-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 783, "end_pos": 1259, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGL6" }, { "id": "PF12001", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3496", "eco_id": "ECO_0000259", "start_pos": 1513, "end_pos": 1620, "start_aa": "Arg", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], 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"MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAPAYPQELCLAQSFHLKPSLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCAAAPGAHYRAGTGGGPVAGQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGTRAPDPTDSRNLHIQHPGYR", "length": 560, "header": "tr|A0A9J7GGN0-1|A0A9J7GGN0_CRIGR Isoform 1 of Protein FAM222B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam222b PE=4 SV=1 CANONICAL=A0A9J7GGN0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGN0/entry#A0A9J7GGN0-1", "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAPAYPQELCLAQSFHLKPSLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCAAAPGAHYRAGTGGGPVAGQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGTRAPDPTDSRNLHIQHPGYR", "length": 560, "header": "tr|A0A9J7GGN0-1|A0A9J7GGN0_CRIGR Isoform 1 of Protein FAM222B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam222b PE=4 SV=1 CANONICAL=A0A9J7GGN0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGN0/entry#A0A9J7GHP2-1", "sequence": { "sequence": "MLVCHASLSTRARGPVLSASFSHADEHWTSEIVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAPAYPQELCLAQSFHLKPSLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCAAAPGAHYRAGTGGGPVAGQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGTRAPDPTDSRNLHIQHPGYR", "length": 527, "header": "tr|A0A9J7GHP2-1|A0A9J7GHP2_CRIGR Computationally mapped isoform of Protein FAM222B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam222b PE=4 SV=1 CANONICAL=A0A9J7GGN0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 381, "start_aa": "Thr", "end_pos": 381, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr381", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 41, "start_aa": "Thr", "end_pos": 41, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr41", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 428, "start_aa": "Thr", "end_pos": 428, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr428", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 547, "start_aa": "Thr", "end_pos": 547, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr547", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGN0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGN0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763154", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763154", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 41, 93, 381, 428, 547 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 303, "end_pos": 305 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGP0-1", "uniprot_ac": "A0A9J7GGP0", "uniprot_id": "A0A9J7GGP0_CRIGR", "mass": { "chemical_mass": 55692.0, "monoisotopic_mass": 55692.0 }, "refseq": { "ac": "XP_027281673", "name": "LOW QUALITY PROTEIN: secretion-regulating guanine nucleotide exchange factor isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281673" }, "gene_names": [ { "name": "LOC100756600", "type": "recommended", "evidence": [ { "id": "A0A9J7GGP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0" } ] }, { "name": "LOC100756600", "type": "synonym", "evidence": [ { "id": "XP_027281673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281673" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: secretion-regulating guanine nucleotide exchange factor isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027281673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281673" }, { "id": "A0A9J7GGP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281673" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756600", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0", "locus": {} } ], "crossref": [ { "id": "100756600", "url": "https://www.ncbi.nlm.nih.gov/gene/100756600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756600", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGP0", "url": "https://www.orthodb.org/?gene=A0A9J7GGP0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22870", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22870", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22870:SF466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22870:SF466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00415", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00415", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13540", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13540", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCMARKSYVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQXLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVEAKVTGDTNVRRSFSGREIRALLLKPVRLIWYDAFSYMYAQALGIMVLFLEKRVTEGQVHSSACRKPSPEREGCVAAGLRHALATTVSGSVFQWGTGLASSGXTLVSQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTAYTGELYVWGRNKHGQLASLAAFLLLPQRIDASCFQDEKVIAVWSGWTHLVAQTVDLPLIDSLIRVLQNMEHCQKKLANSTEAPTNCVSTQDDFHMKILKDISCEFLSNIFQALTKFQRLVHYHEGDMAAGRHGAGEIAESYILSCRKRETLGLETMAKGLKEGQLSKKKYSCAFQSLLPLYSPVVEDFIKVLHEVDKAVAEDLEESFPSVKAQLKTQV", "length": 515, "header": "tr|A0A9J7GGP0-1|A0A9J7GGP0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: secretion-regulating guanine nucleotide exchange factor isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100756600 PE=4 SV=1 CANONICAL=A0A9J7GGP0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0/entry#A0A9J7GGP0-1", "sequence": { "sequence": "MCMARKSYVSEADSAAAAAALFAWGANSYGQLGLGHKEDVLLPQXLSNFCEPGCIKSVTGGGGHSAAVTDGGSLFVCGLNKDGQLGLGHTEDVLCFTICKPLLGCPIRQVACGWDFTIMLTEIGQVLSCGSNAFGQLGVPHGPRRCVVPQAVEAKVTGDTNVRRSFSGREIRALLLKPVRLIWYDAFSYMYAQALGIMVLFLEKRVTEGQVHSSACRKPSPEREGCVAAGLRHALATTVSGSVFQWGTGLASSGXTLVSQTLPLFLTAKEPSRVMGLEDSTAVCVVAGSDHSASLTAYTGELYVWGRNKHGQLASLAAFLLLPQRIDASCFQDEKVIAVWSGWTHLVAQTVDLPLIDSLIRVLQNMEHCQKKLANSTEAPTNCVSTQDDFHMKILKDISCEFLSNIFQALTKFQRLVHYHEGDMAAGRHGAGEIAESYILSCRKRETLGLETMAKGLKEGQLSKKKYSCAFQSLLPLYSPVVEDFIKVLHEVDKAVAEDLEESFPSVKAQLKTQV", "length": 515, "header": "tr|A0A9J7GGP0-1|A0A9J7GGP0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: secretion-regulating guanine nucleotide exchange factor isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100756600 PE=4 SV=1 CANONICAL=A0A9J7GGP0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP0" }, { "id": "PF28174", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAAL1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 349, "end_pos": 481, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 375, "end_pos": 377 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGP3-1", "uniprot_ac": "A0A9J7GGP3", "uniprot_id": "A0A9J7GGP3_CRIGR", "mass": { "chemical_mass": 163282.0, "monoisotopic_mass": 163282.0 }, "refseq": { "ac": "XP_027283788", "name": "G patch domain-containing protein 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283788" }, "gene_names": [ { "name": "Gpatch8", "type": "recommended", "evidence": [ { "id": "A0A9J7GGP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ] }, { "name": "Gpatch8", "type": "synonym", "evidence": [ { "id": "XP_027283788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283788" } ] } ], "protein_names": [ { "name": "G patch domain-containing protein 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027283788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283788" }, { "id": "A0A9J7GGP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283788", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283788" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpatch8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3", "locus": {} } ], "crossref": [ { "id": "100757325", "url": "https://www.ncbi.nlm.nih.gov/gene/100757325", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757325", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757325", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGP3", "url": "https://www.orthodb.org/?gene=A0A9J7GGP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17614:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17614:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283788", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283788", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKTLQGRTDPIPIVVKYDVMGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAPGSGPMFRPTTVAVDEDGGDEDKDESSTNSGTSAVSSCGLGSEFSVDKGGSFTAVQVTNTTGLAQAPGVASQGISFGIKNNLGPPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTPEDDTKADEKSSDAGVQKVGDADGTGNLDGKKEDEDPPDGGSLASTLSKLKRMKREEGAGATEPEYYHYIPPAHCKVKPNFPFLLFMRASEQMEGDHSTHSKNATDNKKSSSPKPKGCTKVAASQGAEKTVNEVSGSQKETTVAEPSESGDKTETKKGSGEGMSEQSMESQETSESQIRESNPKVSQASSAATAGQGPKHPTGPFFSVLSKDESTALQWPSELLIFTKAEPSVSYSCNPLYFDFKLSRNKDARAKGTEKPKDDGGSSKDRIQSLDPREPDKSKEGDEPDAEATCSSLNKQDPGGSHGSETEDTGRSHPGKKEPSGKSHRHKKKKKHKKSSKHKRKHKADMEEKSSKVESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGNSSKKDDGGGGSSSQDHSGRKQKGEPPASSCQRRASTKHSSRSSRRSQPSSGDEDSDDASSHRLHQQSPSQYSEEEEEEEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDGSSDQSCYSRQHSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKGSWGHESPEERRSGHRDFIRSKIYRSQSPHYFRSGRGEGPGKKEDGRGDDSKGTSLPSQNSSTGPGRGSESDCSPEDKNSVTARLLLEKIQSRKVERKPNVCEEVLATPNKAGLKYKNPPQGYFGPKLPPSLGNKPVLPLIGKLPATRKPNKKCEESGLERGEEQEQSEPEEGSPGSNDAPFGHQFPEETAGPLSDPPPEEPKSEEATADHSVAPLGTPAHTDCYPGDPAISHNYLPDPSDGDTLESLDSGSQQGPVESSLLPIAPDLEHFPSYAPPSGEPSVESADGTEDASLAPLESQPITFTPEEMEKYSKLQQAAQQHIQQQLLAKQVKAFPASAALAPATPALQPIHIQQPATASATSITTVQHAILQHHAAAAAAAAIGIHPHPHPQPLAQVHHIPQPHLTPISLSHLTHSIIPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPRPAAAAATALHLHPLLHPIFSGQDLQHPPSHGT", "length": 1490, "header": "tr|A0A9J7GGP3-1|A0A9J7GGP3_CRIGR Isoform 1 of G patch domain-containing protein 8 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpatch8 PE=4 SV=1 CANONICAL=A0A9J7GGP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3/entry#A0A9J7GGP3-1", "sequence": { "sequence": "MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKTLQGRTDPIPIVVKYDVMGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAPGSGPMFRPTTVAVDEDGGDEDKDESSTNSGTSAVSSCGLGSEFSVDKGGSFTAVQVTNTTGLAQAPGVASQGISFGIKNNLGPPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTPEDDTKADEKSSDAGVQKVGDADGTGNLDGKKEDEDPPDGGSLASTLSKLKRMKREEGAGATEPEYYHYIPPAHCKVKPNFPFLLFMRASEQMEGDHSTHSKNATDNKKSSSPKPKGCTKVAASQGAEKTVNEVSGSQKETTVAEPSESGDKTETKKGSGEGMSEQSMESQETSESQIRESNPKVSQASSAATAGQGPKHPTGPFFSVLSKDESTALQWPSELLIFTKAEPSVSYSCNPLYFDFKLSRNKDARAKGTEKPKDDGGSSKDRIQSLDPREPDKSKEGDEPDAEATCSSLNKQDPGGSHGSETEDTGRSHPGKKEPSGKSHRHKKKKKHKKSSKHKRKHKADMEEKSSKVESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGNSSKKDDGGGGSSSQDHSGRKQKGEPPASSCQRRASTKHSSRSSRRSQPSSGDEDSDDASSHRLHQQSPSQYSEEEEEEEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDGSSDQSCYSRQHSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKGSWGHESPEERRSGHRDFIRSKIYRSQSPHYFRSGRGEGPGKKEDGRGDDSKGTSLPSQNSSTGPGRGSESDCSPEDKNSVTARLLLEKIQSRKVERKPNVCEEVLATPNKAGLKYKNPPQGYFGPKLPPSLGNKPVLPLIGKLPATRKPNKKCEESGLERGEEQEQSEPEEGSPGSNDAPFGHQFPEETAGPLSDPPPEEPKSEEATADHSVAPLGTPAHTDCYPGDPAISHNYLPDPSDGDTLESLDSGSQQGPVESSLLPIAPDLEHFPSYAPPSGEPSVESADGTEDASLAPLESQPITFTPEEMEKYSKLQQAAQQHIQQQLLAKQVKAFPASAALAPATPALQPIHIQQPATASATSITTVQHAILQHHAAAAAAAAIGIHPHPHPQPLAQVHHIPQPHLTPISLSHLTHSIIPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPRPAAAAATALHLHPLLHPIFSGQDLQHPPSHGT", "length": 1490, "header": "tr|A0A9J7GGP3-1|A0A9J7GGP3_CRIGR Isoform 1 of G patch domain-containing protein 8 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpatch8 PE=4 SV=1 CANONICAL=A0A9J7GGP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3/entry#A0A9J7GGQ8-1", "sequence": { "sequence": "MGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAPGSGPMFRPTTVAVDEDGGDEDKDESSTNSGTSAVSSCGLGSEFSVDKGGSFTAVQVTNTTGLAQAPGVASQGISFGIKNNLGPPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTPEDDTKADEKSSDAGVQKVGDADGTGNLDGKKEDEDPPDGGSLASTLSKLKRMKREEGAGATEPEYYHYIPPAHCKVKPNFPFLLFMRASEQMEGDHSTHSKNATDNKKSSSPKPKGCTKVAASQGAEKTVNEVSGSQKETTVAEPSESGDKTETKKGSGEGMSEQSMESQETSESQIRESNPKVSQASSAATAGQGPKHPTGPFFSVLSKDESTALQWPSELLIFTKAEPSVSYSCNPLYFDFKLSRNKDARAKGTEKPKDDGGSSKDRIQSLDPREPDKSKEGDEPDAEATCSSLNKQDPGGSHGSETEDTGRSHPGKKEPSGKSHRHKKKKKHKKSSKHKRKHKADMEEKSSKVESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGNSSKKDDGGGGSSSQDHSGRKQKGEPPASSCQRRASTKHSSRSSRRSQPSSGDEDSDDASSHRLHQQSPSQYSEEEEEEEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDGSSDQSCYSRQHSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKGSWGHESPEERRSGHRDFIRSKIYRSQSPHYFRSGRGEGPGKKEDGRGDDSKGTSLPSQNSSTGPGRGSESDCSPEDKNSVTARLLLEKIQSRKVERKPNVCEEVLATPNKAGLKYKNPPQGYFGPKLPPSLGNKPVLPLIGKLPATRKPNKKCEESGLERGEEQEQSEPEEGSPGSNDAPFGHQFPEETAGPLSDPPPEEPKSEEATADHSVAPLGTPAHTDCYPGDPAISHNYLPDPSDGDTLESLDSGSQQGPVESSLLPIAPDLEHFPSYAPPSGEPSVESADGTEDASLAPLESQPITFTPEEMEKYSKLQQAAQQHIQQQLLAKQVKAFPASAALAPATPALQPIHIQQPATASATSITTVQHAILQHHAAAAAAAAIGIHPHPHPQPLAQVHHIPQPHLTPISLSHLTHSIIPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPRPAAAAATALHLHPLLHPIFSGQDLQHPPSHGT", "length": 1412, "header": "tr|A0A9J7GGQ8-1|A0A9J7GGQ8_CRIGR Computationally mapped isoform of G patch domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpatch8 PE=4 SV=1 CANONICAL=A0A9J7GGP3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1213, "start_aa": "Thr", "end_pos": 1213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1213", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1340, "start_aa": "Thr", "end_pos": 1340, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1340", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757325", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757325", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1055, "end_pos": 1057, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 165, "start_aa": "Phe", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGP3" }, { "id": "PS50174", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-patch", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 86, "start_aa": "Ser", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1213, 1340 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1055, "end_pos": 1057 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 268, "end_pos": 270 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 701, "end_pos": 703 }, { "start_pos": 747, "end_pos": 749 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGQ1-1", "uniprot_ac": "A0A9J7GGQ1", "uniprot_id": "A0A9J7GGQ1_CRIGR", "mass": { "chemical_mass": 42510.0, "monoisotopic_mass": 42510.0 }, "refseq": { "ac": "XP_003506136", "name": "tumor protein p53-inducible protein 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506136" }, "gene_names": [ { "name": "Tp53i13", "type": "recommended", "evidence": [ { "id": "A0A9J7GGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1" } ] }, { "name": "Tp53i13", "type": "synonym", "evidence": [ { "id": "XP_003506136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506136" } ] } ], "protein_names": [ { "name": "Tumor protein p53-inducible protein 13 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1/entry#names_and_taxonomy" } ] }, { "name": "tumor protein p53-inducible protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506136" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 78 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614210.1) and transcript sequence (IACG01091320.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003506136.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506136" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tp53i13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGQ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGQ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756451", "url": "https://www.ncbi.nlm.nih.gov/gene/100756451", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100756451", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756451", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGQ1", "url": "https://www.orthodb.org/?gene=A0A9J7GGQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34179:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34179:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003506136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506136", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H662", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H662", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H662-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H662-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVGGTAGPAEMVPPPPPPPQLLLVALVGLLSLCEVVVEPAAEEAGTRCPEGLWPLPPQVLPRVTYTQERRGQLDGVAFLYHPCAHPWLKLQLALLAHMCVAKPTLIPDSSLTWDRPLVLTAWGTALEMAWIEPAWAAHWLKRRRRRQQRKSVWILSDTLSGPTPMMPAPSRGKLCGRRCVQAPTLAFALRSWRPPGVEVTSRGSLSVVRRRGLRAALGLQSTPSGLRVSLASSQSPKAQQPILGTSSVAPDSLMTGGPGGNDRSRTEAQMPSGQDNPEGCACLGQASPAPRAAAPPRVARGPTPRTEEAAWAAMALTFLLVLLTLATLCTRLHRNFRRSESIYWGPTGDSQDTVAAVLKRRLPLPSRRIKRSRRRPLLPPTPDSGPESESSD", "length": 393, "header": "tr|A0A9J7GGQ1-1|A0A9J7GGQ1_CRIGR Isoform 1 of Tumor protein p53-inducible protein 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tp53i13 PE=4 SV=1 CANONICAL=A0A9J7GGQ1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1/entry#A0A9J7GGQ1-1", "sequence": { "sequence": "MLVGGTAGPAEMVPPPPPPPQLLLVALVGLLSLCEVVVEPAAEEAGTRCPEGLWPLPPQVLPRVTYTQERRGQLDGVAFLYHPCAHPWLKLQLALLAHMCVAKPTLIPDSSLTWDRPLVLTAWGTALEMAWIEPAWAAHWLKRRRRRQQRKSVWILSDTLSGPTPMMPAPSRGKLCGRRCVQAPTLAFALRSWRPPGVEVTSRGSLSVVRRRGLRAALGLQSTPSGLRVSLASSQSPKAQQPILGTSSVAPDSLMTGGPGGNDRSRTEAQMPSGQDNPEGCACLGQASPAPRAAAPPRVARGPTPRTEEAAWAAMALTFLLVLLTLATLCTRLHRNFRRSESIYWGPTGDSQDTVAAVLKRRLPLPSRRIKRSRRRPLLPPTPDSGPESESSD", "length": 393, "header": "tr|A0A9J7GGQ1-1|A0A9J7GGQ1_CRIGR Isoform 1 of Tumor protein p53-inducible protein 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tp53i13 PE=4 SV=1 CANONICAL=A0A9J7GGQ1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H662-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ1/entry#A0A9J7H662-1", "sequence": { "sequence": "MLVGGTAGPAEMVPPPPPPPQLLLVALVGLLSLCEVLPRVTYTQERRGQLDGVAFLYHPCAHPWLKLQLALLAHMCVAKPTLIPDSSLTWDRPLVLTAWGTALEMAWIEPAWAAHWLKRRRRRQQRKSVWILSDTLSGPTPMMPAPSRGKLCGRRCVQAPTLAFALRSWRPPGVEVTSRGSLSVVRRRGLRAALGLQSTPSGLRVSLASSQSPKAQQPILGTSSVAPDSLMTGGPGGNDRSRTEAQMPSGQDNPEGCACLGQASPAPRAAAPPRVARGPTPRTEEAAWAAMALTFLLVLLTLATLCTRLHRNFRRSESIYWGPTGDSQDTVAAVLKRRLPLPSRRIKRSRRRPLLPPTPDSGPESESSD", "length": 369, "header": "tr|A0A9J7H662-1|A0A9J7H662_CRIGR Computationally mapped isoform of Tumor protein p53-inducible protein 13 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tp53i13 PE=4 SV=1 CANONICAL=A0A9J7GGQ1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 164, "start_aa": "Thr", "end_pos": 164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr164", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 223, "start_aa": "Thr", "end_pos": 223, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr223", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 304, "start_aa": "Thr", "end_pos": 304, 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} ] }, { "uniprot_canonical_ac": "A0A9J7GGQ3-1", "uniprot_ac": "A0A9J7GGQ3", "uniprot_id": "A0A9J7GGQ3_CRIGR", "mass": { "chemical_mass": 28015.0, "monoisotopic_mass": 28015.0 }, "refseq": { "ac": "XP_027285179", "name": "myristoylated alanine-rich C-kinase substrate-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285179" }, "gene_names": [ { "name": "LOC113837054", "type": "recommended", "evidence": [ { "id": "A0A9J7GGQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3" } ] }, { "name": "LOC113837054", "type": "synonym", "evidence": [ { "id": "XP_027285179", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285179" } ] } ], "protein_names": [ { "name": "Myristoylated alanine-rich C-kinase substrate-like", "type": "synonym", "evidence": [ { "id": "A0A9J7GGQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3/entry#names_and_taxonomy" } ] }, { "name": "myristoylated alanine-rich C-kinase substrate-like", "type": "synonym", "evidence": [ { "id": "XP_027285179", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285179" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285179", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285179" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837054", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGQ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837054", "url": "https://www.ncbi.nlm.nih.gov/gene/113837054", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113837054", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837054", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027285179", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285179", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAVGVVRWLKAVRGVKQAKVALKVCGRERAWGKCGYRRRGGNTAVGSPALAGAARCGGVAGHPGADRVKRPRQRAEPGCQGNGSASSGGAGAYHCAGEPARRTRRAQRGRQTPGARARSPRRLRCFPLPAAGSRTRPASAGEEGRTTASESPPRGDKGSRKPSVARAPGPGLAGARSSDAAGAGCRRARGGGGARARTRRRPGRDVRPERPAGAGREAGRKRRSDAPEEEGRRPAEGGEGRPLARGGPALGASRAAAAAAAAAAAAAAPAPPAPGATA", "length": 279, "header": "tr|A0A9J7GGQ3-1|A0A9J7GGQ3_CRIGR Isoform 1 of Myristoylated alanine-rich C-kinase substrate-like OS=Cricetulus griseus OX=10029 GN=LOC113837054 PE=4 SV=1 CANONICAL=A0A9J7GGQ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ3/entry#A0A9J7GGQ3-1", "sequence": { "sequence": "MGAVGVVRWLKAVRGVKQAKVALKVCGRERAWGKCGYRRRGGNTAVGSPALAGAARCGGVAGHPGADRVKRPRQRAEPGCQGNGSASSGGAGAYHCAGEPARRTRRAQRGRQTPGARARSPRRLRCFPLPAAGSRTRPASAGEEGRTTASESPPRGDKGSRKPSVARAPGPGLAGARSSDAAGAGCRRARGGGGARARTRRRPGRDVRPERPAGAGREAGRKRRSDAPEEEGRRPAEGGEGRPLARGGPALGASRAAAAAAAAAAAAAAPAPPAPGATA", "length": 279, "header": "tr|A0A9J7GGQ3-1|A0A9J7GGQ3_CRIGR Isoform 1 of Myristoylated alanine-rich C-kinase substrate-like OS=Cricetulus griseus OX=10029 GN=LOC113837054 PE=4 SV=1 CANONICAL=A0A9J7GGQ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281799", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281799" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGV0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGV0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757802", "url": "https://www.ncbi.nlm.nih.gov/gene/100757802", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgef33 PE=4 SV=1 CANONICAL=A0A9J7GGV0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285353" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tgoln2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GGY1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GGY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752925", "url": "https://www.ncbi.nlm.nih.gov/gene/100752925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100752925", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGY1", "url": "https://www.orthodb.org/?gene=A0A9J7GGY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23211", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23211", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23211:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23211:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285353", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATGKPRAEYVLVWSEKSTTSNGDVRGTGGRRGEAAPGPATPYHEPRGATQRQPRRTTPRARGHVHREEAVELVRVLRKRGRAGPHVRCTLPEYSAADSPHPLAPPPGRGCAGRGTARRKGSGHRLEVPRAALTSAEEGGSADYRMRFLVALLLSVAVASVTPHESNPLITSGNDNSPIQSSKEKLSNQSPMSPEKEVESKPGEPGGQTDQKQQPGESGGQTDQKQQPGEPGGQTGQKQQPGEPGGQTGQKQQPGEPGGQTGQKQQPGESGGQTGQKQQLGEPGGQTGQRQQPGEPGGQTDQKQQPGEPGGQTGQRQQPGEPGGQTGQRQQPGEPGGQTDQRQQPGEPGGQTGQRQQPGEPGGQTDQRQQPANPNPDETVASTMAAVSSSVGSGQRQVIAAKSPNQPQTADTQSTGTAQQPPPPDPKPDESRQKPPKDDSDKLTKVPADDRISKPSSDKETDKIDKTELAGKGQKPMLTSKTESGERPAGDSDFSLKPGKSSELTEAVETKETEEGDTEPEEGSPLEEDNEKVFDPSSSENREETLRESVNDEKDDSYKDSSGNTSAESSHFFAYLVTAAVLVAVLYIAYHNKRKIIAFALEGKRSKVTRRPKASDYQRLNLKL", "length": 624, "header": "tr|A0A9J7GGY1-1|A0A9J7GGY1_CRIGR Isoform 1 of Trans-Golgi network integral membrane protein 2 OS=Cricetulus griseus OX=10029 GN=Tgoln2 PE=4 SV=1 CANONICAL=A0A9J7GGY1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1/entry#A0A9J7GGY1-1", "sequence": { "sequence": "MATGKPRAEYVLVWSEKSTTSNGDVRGTGGRRGEAAPGPATPYHEPRGATQRQPRRTTPRARGHVHREEAVELVRVLRKRGRAGPHVRCTLPEYSAADSPHPLAPPPGRGCAGRGTARRKGSGHRLEVPRAALTSAEEGGSADYRMRFLVALLLSVAVASVTPHESNPLITSGNDNSPIQSSKEKLSNQSPMSPEKEVESKPGEPGGQTDQKQQPGESGGQTDQKQQPGEPGGQTGQKQQPGEPGGQTGQKQQPGEPGGQTGQKQQPGESGGQTGQKQQLGEPGGQTGQRQQPGEPGGQTDQKQQPGEPGGQTGQRQQPGEPGGQTGQRQQPGEPGGQTDQRQQPGEPGGQTGQRQQPGEPGGQTDQRQQPANPNPDETVASTMAAVSSSVGSGQRQVIAAKSPNQPQTADTQSTGTAQQPPPPDPKPDESRQKPPKDDSDKLTKVPADDRISKPSSDKETDKIDKTELAGKGQKPMLTSKTESGERPAGDSDFSLKPGKSSELTEAVETKETEEGDTEPEEGSPLEEDNEKVFDPSSSENREETLRESVNDEKDDSYKDSSGNTSAESSHFFAYLVTAAVLVAVLYIAYHNKRKIIAFALEGKRSKVTRRPKASDYQRLNLKL", "length": 624, "header": "tr|A0A9J7GGY1-1|A0A9J7GGY1_CRIGR Isoform 1 of Trans-Golgi network integral membrane protein 2 OS=Cricetulus griseus OX=10029 GN=Tgoln2 PE=4 SV=1 CANONICAL=A0A9J7GGY1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752925", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "pmid": "" }, { "name": "trans-Golgi network transport vesicle", "id": "GO:0030140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030140", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 564, "end_pos": 566, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 564, "end_pos": 566 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GGY2-1", "uniprot_ac": "A0A9J7GGY2", "uniprot_id": "A0A9J7GGY2_CRIGR", "mass": { "chemical_mass": 139294.0, "monoisotopic_mass": 139294.0 }, "refseq": { "ac": "XP_027286352", "name": "cation channel sperm-associated protein subunit gamma isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286352" }, "gene_names": [ { "name": "Catsperg", "type": "recommended", "evidence": [ { "id": "A0A9J7GGY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ] }, { "name": "Catsperg", "type": "synonym", "evidence": [ { "id": "XP_027286352", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286352" } ] } ], "protein_names": [ { "name": "Cation channel sperm-associated protein subunit gamma 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286352" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Catsperg", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2", "locus": {} } ], "crossref": [ { "id": "100764558", "url": "https://www.ncbi.nlm.nih.gov/gene/100764558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764558", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GGY2", "url": "https://www.orthodb.org/?gene=A0A9J7GGY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14327", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14327", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14327:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14327:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15064", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15064", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22846", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22846", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22851", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22851", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286352", "database": "RefSeq", "categories": [ "Protein" ] }, { 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"MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREKYMGFPYYLKVNYSCMGKDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1212, "header": "tr|A0A9J7GGY2-1|A0A9J7GGY2_CRIGR Isoform 1 of Cation channel sperm-associated protein subunit gamma isoform X4 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7GGY2-1", "sequence": { "sequence": "MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREKYMGFPYYLKVNYSCMGKDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1212, "header": "tr|A0A9J7GGY2-1|A0A9J7GGY2_CRIGR Isoform 1 of Cation channel sperm-associated protein subunit gamma isoform X4 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GLG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7GLG9-1", "sequence": { "sequence": "MKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 985, "header": "tr|A0A9J7GLG9-1|A0A9J7GLG9_CRIGR Computationally mapped isoform of Cation channel sperm-associated protein subunit gamma isoform X9 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7H7H5-1", "sequence": { "sequence": "MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1194, "header": "tr|A0A9J7H7H5-1|A0A9J7H7H5_CRIGR Computationally mapped isoform of Cation channel sperm-associated protein subunit gamma isoform X6 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7K1T7-1", "sequence": { "sequence": "MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREKYMGFPYYLKVNYSCMGKDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1192, "header": "tr|A0A9J7K1T7-1|A0A9J7K1T7_CRIGR Computationally mapped isoform of Cation channel sperm-associated protein subunit gamma isoform X7 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7K9J3-1", "sequence": { "sequence": "MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREKYMGFPYYLKVNYSCMGKDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDCVFHPFSRVHCPPVLAILSPLPSSLCVQPSAPTPSSPPLPSCSSLDKANFFLPSSPSQPTVFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1199, "header": "tr|A0A9J7K9J3-1|A0A9J7K9J3_CRIGR Computationally mapped isoform of Cation channel sperm-associated protein subunit gamma isoform X5 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2/entry#A0A9J7KCZ8-1", "sequence": { "sequence": "MVCWPAMSPVSPVWSRRPSVWACWGLLLVLLLSWKSWAVYHLQQCRWLVVLNKFEKVGSLPSKDRFLEQEPTDTVAEVFEKLVDSPVDPREKYMGFPYYLKVNYSCMGKDDEELSRKGHLMGMRPVVLISYKYPVNFYHWKIENLQIQMEAAPLRSSGFCIAEIVCALNWYVPMPIKNGSVVMSVDIRSNGLGPYIPPTRFYMNMNGFLKRDESGKPIFTMGYETFIMKTAHFKRSKSRPLWYTINHSPVFILGGIEDEKTILLSDTSFQDYSLVELSIDSCWVGSYYCPMLEFSATIHDAISTESTLFIRQNQLVYYFTGRYSSLFDNSRSSSSWVRVLASECIKRLCPVFIHGNGSEYILALTTGKHEGYIHIGTITDGLVSFRMVPEKWSICDKFIGTNCSINWATYITDEKILLLLVQVLSWDSALVYNLVSFNLETQNLEVLYVLPLFIPEAQGLDFLVLDGTEPYTTTSMVPKGLFFNTFNNMLYIWGNFILQSYNRIHFIYLADFPKESTIKYMVNSYQGDMAFVTEKDEIWYFLEGGYDVYQIIPSKGWSIYFNLQKMHQSSLFAEQEFLVSVFYEDGQLYQLIYLLESGNERLVKRVLPVAQLLLYNQNNPVTLQKHGSYRMPFFTNFCPFKVMRLRDLPKKQHFARQELYHAPPPLVSESLGFHNNKTLAVYQGLVYYLLWLHSKYDKPYADPVHDPTWRWWEQKTQYKDYYFYLSSNWLAAEGVYIDMSSYQKLYNISNDYGLPETVFLDKGNAFSFTIFLSSDDDTFKLNSNPVTGYQVEKKLAVAVAVADPDCLKASVKQEVLLNRKAVLYRITIKDRKVCYDQGLSGHNLKKTSMMVKVLGSSGKCFQTSYSGTSMQGHLMVPVLIGCPPGKRLAFDVTYTILHSRELNKHYFDCGRTNPEMPCFLFRDLFQPFFLIQDMVTGDSGSFLGSYLLKVVGGGHTIDTIRDYTEEEIYHYNSPLDKTNSLIWKTKVERTTLDKKFYIMSYQSPGIEWLCLENSPCHDITPQNIFAPEFFLKLLVSNRGVDTSTYCDYQLIFVLHMHGLPLSGKRSLFIVIVSISLLVGLVVFYILFLLLWPHIVRAWISLRWKINNIMASESYYTYATSNPAFSFQSHSGSEQSYKEGSKEETIVKKEVVA", "length": 1152, "header": "tr|A0A9J7KCZ8-1|A0A9J7KCZ8_CRIGR Computationally mapped isoform of Cation channel sperm-associated protein subunit gamma isoform X8 OS=Cricetulus griseus OX=10029 GN=Catsperg PE=4 SV=1 CANONICAL=A0A9J7GGY2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 956, "start_aa": "Thr", "end_pos": 956, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr956", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764558", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GGY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" }, { "id": "PF22846", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG C-terminal", "eco_id": "ECO_0000259", "start_pos": 984, "end_pos": 1166, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" }, { "id": "PF22851", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22851" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG Ig-like", "eco_id": "ECO_0000259", "start_pos": 754, "end_pos": 879, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" }, { "id": "PF22840", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG N-terminal", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 204, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GGY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY2" }, { "id": "PF15064", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG beta-propeller", "eco_id": "ECO_0000259", "start_pos": 208, "end_pos": 649, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 956 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 747, "end_pos": 749 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJH9-1", "uniprot_ac": "A0A9J7GJH9", "uniprot_id": "A0A9J7GJH9_CRIGR", "mass": { "chemical_mass": 47791.0, "monoisotopic_mass": 47791.0 }, "refseq": { "ac": "XP_027286057", "name": "programmed cell death protein 2-like isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286057" }, "gene_names": [ { "name": "Pdcd2l", "type": "recommended", "evidence": [ { "id": "A0A9J7GJH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9" } ] }, { "name": "Pdcd2l", "type": "synonym", "evidence": [ { "id": "XP_027286057", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286057" } ] } ], "protein_names": [ { "name": "Programmed cell death protein 2-like isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7GJH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#names_and_taxonomy" } ] }, { "name": "programmed cell death protein 2-like isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027286057", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286057" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286057" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJH9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pdcd2l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJH9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJH9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764678", "url": "https://www.ncbi.nlm.nih.gov/gene/100764678", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764678", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764678", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJH9", "url": "https://www.orthodb.org/?gene=A0A9J7GJH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46421", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46421", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46421:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46421:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286057", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJH9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GM15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GM15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GM15-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GM15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRYSWSGEPLFFTCPTLEVSEIPACSGCGGHRTFEFQLMPALVSMLSSADLNLVVEFGTVLVFTCEQSCWPETQETPMEEFSIVQEDPDEVFFK", "length": 443, "header": "tr|A0A9J7GJH9-1|A0A9J7GJH9_CRIGR Isoform 1 of Programmed cell death protein 2-like isoform X6 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=3 SV=1 CANONICAL=A0A9J7GJH9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7GGY3-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRYSWSGEPLFFTCPTLEVSEIPACSGCGGHRTFEFQLMPALVSMLSSADLRKCTVWN", "length": 407, "header": "tr|A0A9J7GGY3-1|A0A9J7GJH9_CRIGR Computationally mapped isoform of Programmed cell death protein 2-like isoform X6 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=3 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7GHT0-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRSCCGIWNGSCFHM", "length": 364, "header": "tr|A0A9J7GHT0-1|A0A9J7GHT0_CRIGR Computationally mapped isoform of Programmed cell death protein 2-like isoform X11 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=4 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7GJF7-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRYSWSGEPLFFTCPTLEVSEIPACSGCGGHRTFEFQLMPALVSMLSSADLNLVVEFGTVLVFTCEQSCWPETQETPMEEFSIVQEDPDEVFFK", "length": 418, "header": "tr|A0A9J7GJF7-1|A0A9J7GJF7_CRIGR Computationally mapped isoform of Programmed cell death protein 2-like isoform X7 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=3 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7GJH9-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRYSWSGEPLFFTCPTLEVSEIPACSGCGGHRTFEFQLMPALVSMLSSADLNLVVEFGTVLVFTCEQSCWPETQETPMEEFSIVQEDPDEVFFK", "length": 443, "header": "tr|A0A9J7GJH9-1|A0A9J7GJH9_CRIGR Isoform 1 of Programmed cell death protein 2-like isoform X6 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=3 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GM15-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7GM15-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRLCTYRTHLQARKEGR", "length": 366, "header": "tr|A0A9J7GM15-1|A0A9J7GM15_CRIGR Computationally mapped isoform of Programmed cell death protein 2-like isoform X10 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=4 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH9/entry#A0A9J7H3Q2-1", "sequence": { "sequence": "MPLCSVNLALGGHASRAPKPALRGESTTRQGLSQPGRSGLRTRARAASAPCRPPSAAPSRGSRVVMAASARKPVLLGLRDAPVQDCPRGPSDWTTSRLGGVPDALPAVAAPEPRCDSCAYPLALVVQVYCPLEGSPFHRLIHVFACARPGCGNRGTRCWKVLRSQCLQVPEKETQNGQEQGQGLAAETWCEGSQDWGNDSKEAPPPPPPSDLGTDCNSVRTGDWAAQLQALHLQDTDPAVASPSPAAPGLPAPTEGPGLPAPTEVPVPQFQPYYICVANEDDYRKPAGLDHAQSLLQDYKQREGVDLEHLLSLCSAGDGDEKYEKTNIRGGDQTFYKFMKKIAACQEQILRYSWSGEPLFFTCPTLEVSEIPACSGCGGHRTFEFQLMPALVSMLSSADLSSARTELTYRHGRKEGRE", "length": 418, "header": "tr|A0A9J7H3Q2-1|A0A9J7H3Q2_CRIGR Computationally mapped isoform of Programmed cell death protein 2-like isoform X8 OS=Cricetulus griseus OX=10029 GN=Pdcd2l PE=3 SV=1 CANONICAL=A0A9J7GJH9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 254, "start_aa": "Thr", "end_pos": 254, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr254", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGY3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286079" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpatch1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJG8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757025", "url": "https://www.ncbi.nlm.nih.gov/gene/100757025", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Computationally mapped isoform of G patch domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpatch1 PE=3 SV=1 CANONICAL=A0A9J7GJG8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG8/entry#A0A9J7GJG8-1", "sequence": { "sequence": 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Isoform 1 of G patch domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpatch1 PE=3 SV=1 CANONICAL=A0A9J7GJG8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 661, "start_aa": "Thr", "end_pos": 661, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr661", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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} ] }, { "uniprot_canonical_ac": "A0A9J7GHC8-1", "uniprot_ac": "A0A9J7GHC8", "uniprot_id": "A0A9J7GHC8_CRIGR", "mass": { "chemical_mass": 45500.0, "monoisotopic_mass": 45500.0 }, "refseq": { "ac": "XP_027286343", "name": "sprouty-related, EVH1 domain-containing protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286343" }, "gene_names": [ { "name": "Spred3", "type": "recommended", "evidence": [ { "id": "A0A9J7GHC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8" } ] }, { "name": "Spred3", "type": "synonym", "evidence": [ { "id": "XP_027286343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286343" } ] } ], "protein_names": [ { "name": "Sprouty-related, EVH1 domain-containing protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GHC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8/entry#names_and_taxonomy" } ] }, { "name": "sprouty-related, 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286343" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spred3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd10574", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10574", "database": "CDD", "categories": [ "Protein Classification" ] 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"MGTLRGARCSPSRALGPSGQVRLLGSYPSPKPPPPPTRLPGSPSLPPRPGSRCPSPAPPEPARERERTGGGGGGGGGGGRVAAARSPAGASQTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALSRGSLTPSSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPTAVAAAIVTVESTSAFPPATPPQRRRSSAQSYPPLLQFTGIPEPSESLAGAGSQGWGGRGYEDYRRSGLPAPLPLSTCVVGFAKTGALRGAALGPPVSLPAPLTEAAPPAPPARPPPGPGPTPAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVATRCGCAGCGGRHEEAAR", "length": 443, "header": "tr|A0A9J7GHC8-1|A0A9J7GHC8_CRIGR Isoform 1 of Sprouty-related, EVH1 domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spred3 PE=4 SV=1 CANONICAL=A0A9J7GHC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H593-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8/entry#A0A9J7H593-1", "sequence": { "sequence": "MVRVRAVVMARDDSSGGWLPVGGGGLSQTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALSRGSLTPSSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPTAVAAAIVTVESTSAFPPATPPQRRRSSAQSYPPLLQFTGIPEPSESLAGAGSQGWGGRGYEDYRRSGLPAPLPLSTCVVGFAKTGALRGAALGPPVSLPAPLTEAAPPAPPARPPPGPGPTPAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVATRCGCAGCGGRHEEAAR", "length": 379, "header": "tr|A0A9J7H593-1|A0A9J7H593_CRIGR Computationally mapped isoform of Sprouty-related, EVH1 domain-containing protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Spred3 PE=4 SV=1 CANONICAL=A0A9J7GHC8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 314, "start_aa": "Thr", "end_pos": 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of MAPK cascade", "id": "GO:0043409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043409", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8" } ], "pmid": "" }, { "name": "negative regulation of ERK1 and ERK2 cascade", "id": "GO:0070373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070373", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHC8" } ], "pmid": "" }, { "name": "negative regulation of transforming growth factor beta receptor signaling pathway", "id": "GO:0030512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030512", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHC8", "url": 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[ { "name": "LOC100753414", "type": "recommended", "evidence": [ { "id": "A0A9J7GHF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5" } ] }, { "name": "LOC100753414", "type": "synonym", "evidence": [ { "id": "XP_027285779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285779" } ] } ], "protein_names": [ { "name": "Proline-rich protein HaeIII subfamily 1-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GHF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein HaeIII subfamily 1-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027285779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285779" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285779" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753414", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753414", "url": "https://www.ncbi.nlm.nih.gov/gene/100753414", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753414", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753414", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23203", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23203", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23203:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23203:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027285779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285779", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVCHLAEVLKRSQGCSASFVKCEVTQDGDQRHHSSAVSYKDSYPLHEAQTWKKLQSLSKMLAVLFTAALLALSSVQPFSEGFPQGPPPKQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNQGPQPGNQQGPPPQGGPQQNQGPQPGNQQGPPQQGGRPQGPPQGQSPQ", "length": 341, "header": "tr|A0A9J7GHF5-1|A0A9J7GHF5_CRIGR Isoform 1 of Proline-rich protein HaeIII subfamily 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100753414 PE=4 SV=1 CANONICAL=A0A9J7GHF5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF5/entry#A0A9J7GHF5-1", "sequence": { "sequence": "MVCHLAEVLKRSQGCSASFVKCEVTQDGDQRHHSSAVSYKDSYPLHEAQTWKKLQSLSKMLAVLFTAALLALSSVQPFSEGFPQGPPPKQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPPQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNRPPQQGPPPQGGPQQNQGPQPGNQQGPPPQGGPQQNQGPQPGNQQGPPQQGGRPQGPPQGQSPQ", "length": 341, "header": "tr|A0A9J7GHF5-1|A0A9J7GHF5_CRIGR Isoform 1 of Proline-rich protein HaeIII subfamily 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100753414 PE=4 SV=1 CANONICAL=A0A9J7GHF5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GHG8-1", "uniprot_ac": "A0A9J7GHG8", "uniprot_id": "A0A9J7GHG8_CRIGR", "mass": { "chemical_mass": 34731.0, "monoisotopic_mass": 34731.0 }, "refseq": { "ac": "XP_003508991", "name": "uncharacterized protein C12orf71 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508991" }, "gene_names": [ { "name": "CUNH12orf71", "type": "recommended", "evidence": [ { "id": "A0A9J7GHG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8" } ] }, { "name": "CUNH12orf71", "type": "synonym", "evidence": [ { "id": "XP_003508991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508991" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C12orf71 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7GHG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C12orf71 homolog", "type": "synonym", "evidence": [ { "id": "XP_003508991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508991" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614613.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003508991.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508991" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHG8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH12orf71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHG8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755199", "url": "https://www.ncbi.nlm.nih.gov/gene/100755199", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027908", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027908", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755199", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755199", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHG8", "url": "https://www.orthodb.org/?gene=A0A9J7GHG8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36462", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36462", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36462:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36462:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508991", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHG8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTMTTSPSSSDYSSTEDSVSECKSDHSLSIGHYPPEITFSYEEMVSSHEETASMDSAIHLLPPIQGTWGTENIRRLFRKRDQMEGDPEQFCKLSITMAWDIDEGSNHADSLANLDLNGHCQWMDKWPEDRTKLTLCKLDNLVQKLETFLEKEKGSQHDDHVLPGSTQNEDVYWTSYPSPQTVWVRHEKRDICQDLPNHKTPKNEDIGQVLGNPRLQKDEAVEISQEAGSSSETSSVSRAQQEDAPHSYGTSCLNFRWVFHWLRTQVFSRLRRGHPSQSTISWHQRAARKIQSLRSNRVQPQE", "length": 303, "header": "tr|A0A9J7GHG8-1|A0A9J7GHG8_CRIGR Isoform 1 of Uncharacterized protein C12orf71 homolog OS=Cricetulus griseus OX=10029 GN=CUNH12orf71 PE=4 SV=1 CANONICAL=A0A9J7GHG8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8/entry#A0A9J7GHG8-1", "sequence": { "sequence": "MSTMTTSPSSSDYSSTEDSVSECKSDHSLSIGHYPPEITFSYEEMVSSHEETASMDSAIHLLPPIQGTWGTENIRRLFRKRDQMEGDPEQFCKLSITMAWDIDEGSNHADSLANLDLNGHCQWMDKWPEDRTKLTLCKLDNLVQKLETFLEKEKGSQHDDHVLPGSTQNEDVYWTSYPSPQTVWVRHEKRDICQDLPNHKTPKNEDIGQVLGNPRLQKDEAVEISQEAGSSSETSSVSRAQQEDAPHSYGTSCLNFRWVFHWLRTQVFSRLRRGHPSQSTISWHQRAARKIQSLRSNRVQPQE", "length": 303, "header": "tr|A0A9J7GHG8-1|A0A9J7GHG8_CRIGR Isoform 1 of Uncharacterized protein C12orf71 homolog OS=Cricetulus griseus OX=10029 GN=CUNH12orf71 PE=4 SV=1 CANONICAL=A0A9J7GHG8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHG8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHG8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027285815.1. 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285815", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285815", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287170", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287170" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHS5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klf10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHS5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHS5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21572", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21572", "database": "CDD", "categories": [ "Protein Classification" ] }, 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287218", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287218" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837420", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837420", "url": "https://www.ncbi.nlm.nih.gov/gene/113837420", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837420", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHL6", "url": "https://www.orthodb.org/?gene=A0A9J7GHL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027287218", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287218", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLGDYSHCRPRMPRGLYGVSGRAALWSPAFYPVHRIPCGTWRVEAQEQARASSPVLEHLRRQLERAFQRAAARGRARRAREAVAAVAAAAAAAREERTRARMECALARLRAELLELRLQNHQLARTLLDLNMKMQQLKKQQDLERASKVQSPEDDAMDSECGNA", "length": 165, "header": "tr|A0A9J7GHL6-1|A0A9J7GHL6_CRIGR Isoform 1 of Alanine and arginine-rich domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC113837420 PE=4 SV=1 CANONICAL=A0A9J7GHL6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6/entry#A0A9J7GHL6-1", "sequence": { "sequence": "MGLGDYSHCRPRMPRGLYGVSGRAALWSPAFYPVHRIPCGTWRVEAQEQARASSPVLEHLRRQLERAFQRAAARGRARRAREAVAAVAAAAAAAREERTRARMECALARLRAELLELRLQNHQLARTLLDLNMKMQQLKKQQDLERASKVQSPEDDAMDSECGNA", "length": 165, "header": "tr|A0A9J7GHL6-1|A0A9J7GHL6_CRIGR Isoform 1 of Alanine and arginine-rich domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC113837420 PE=4 SV=1 CANONICAL=A0A9J7GHL6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GHL7-1", "uniprot_ac": "A0A9J7GHL7", "uniprot_id": "A0A9J7GHL7_CRIGR", "mass": { "chemical_mass": 63232.0, "monoisotopic_mass": 63232.0 }, "refseq": { "ac": "XP_027285903", "name": "transmembrane 7 superfamily member 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285903" }, "gene_names": [ { "name": "Tm7sf3", "type": "recommended", "evidence": [ { "id": "A0A9J7GHL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7" } ] }, { "name": "Tm7sf3", "type": "synonym", "evidence": [ { "id": "XP_027285903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285903" } ] } ], "protein_names": [ { "name": "Transmembrane 7 superfamily member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GHL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane 7 superfamily member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027285903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285903" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285903" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tm7sf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHL7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "103162299", "url": "https://www.ncbi.nlm.nih.gov/gene/103162299", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103162299", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162299", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHL7", "url": "https://www.orthodb.org/?gene=A0A9J7GHL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15937:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15937:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHM5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRLRLLVLGVLAAAPAEAQANSSDGFLEFSVGKFTHLLLSRPLPQEAILRHISGNVTFLLFQIHSQYQNTTVSFTKTLLPGTSGTGNDRGLVFMLRPEQTMCTWYLETKDAKPVQTVAIPLSYSERDPIPGGCNLEFDLDIDPNIYLDYNFFETTIKFAPANLGYARGAEPPPCDVSTGQESRWRLRYDVYQYFLPEGDLTEASLLQHLQRMAQVSQVKASAVKVVTLTSDDKTTVSFSSLWGQGVVYNVIVSDPSLNTSAAYVPVHTYACSFESVDGNCASPGRVSTKVFSTVFAVLGIFICFFGHRFWKTELFFVGFIFLGFFFYILISRLTSLKYDVRLVLTAVAGSIGGILLVASWWRFGTLMLCMLCVGLVLGFLVSSGTFFTPLGNLNVFRDDGVFWVTFSCITLLVPVIFMGCLRILNILACGAVGSYSVVLAIDSYIFSSLSYMTLNVLRRALNTDFRAAFIGVPFQTKDFLVLAVWGMLAVSGITLQIRRERGQAPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRLTQIRELFQKEQPAGERTPLLL", "length": 565, "header": "tr|A0A9J7GHL7-1|A0A9J7GHL7_CRIGR Isoform 1 of Transmembrane 7 superfamily member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tm7sf3 PE=4 SV=1 CANONICAL=A0A9J7GHL7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7/entry#A0A9J7GHL7-1", "sequence": { "sequence": "MWRLRLLVLGVLAAAPAEAQANSSDGFLEFSVGKFTHLLLSRPLPQEAILRHISGNVTFLLFQIHSQYQNTTVSFTKTLLPGTSGTGNDRGLVFMLRPEQTMCTWYLETKDAKPVQTVAIPLSYSERDPIPGGCNLEFDLDIDPNIYLDYNFFETTIKFAPANLGYARGAEPPPCDVSTGQESRWRLRYDVYQYFLPEGDLTEASLLQHLQRMAQVSQVKASAVKVVTLTSDDKTTVSFSSLWGQGVVYNVIVSDPSLNTSAAYVPVHTYACSFESVDGNCASPGRVSTKVFSTVFAVLGIFICFFGHRFWKTELFFVGFIFLGFFFYILISRLTSLKYDVRLVLTAVAGSIGGILLVASWWRFGTLMLCMLCVGLVLGFLVSSGTFFTPLGNLNVFRDDGVFWVTFSCITLLVPVIFMGCLRILNILACGAVGSYSVVLAIDSYIFSSLSYMTLNVLRRALNTDFRAAFIGVPFQTKDFLVLAVWGMLAVSGITLQIRRERGQAPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRLTQIRELFQKEQPAGERTPLLL", "length": 565, "header": "tr|A0A9J7GHL7-1|A0A9J7GHL7_CRIGR Isoform 1 of Transmembrane 7 superfamily member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tm7sf3 PE=4 SV=1 CANONICAL=A0A9J7GHL7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7/entry#A0A9J7GHM5-1", "sequence": { "sequence": "MLRPEQTMCTWYLETKDAKPVQTVAIPLSYSERDPIPGGCNLEFDLDIDPNIYLDYNFFETTIKFAPANLGYARGAEPPPCDVSTGQESRWRLRYDVYQYFLPEGDLTEASLLQHLQRMAQVSQVKASAVKVVTLTSDDKTTVSFSSLWGQGVVYNVIVSDPSLNTSAAYVPVHTYACSFESVDGNCASPGRVSTKVFSTVFAVLGIFICFFGHRFWKTELFFVGFIFLGFFFYILISRLTSLKYDVRLVLTAVAGSIGGILLVASWWRFGTLMLCMLCVGLVLGFLVSSGTFFTPLGNLNVFRDDGVFWVTFSCITLLVPVIFMGCLRILNILACGAVGSYSVVLAIDSYIFSSLSYMTLNVLRRALNTDFRAAFIGVPFQTKDFLVLAVWGMLAVSGITLQIRRERGQAPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRLTQIRELFQKEQPAGERTPLLL", "length": 471, "header": "tr|A0A9J7GHM5-1|A0A9J7GHM5_CRIGR Computationally mapped isoform of Transmembrane 7 superfamily member 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tm7sf3 PE=4 SV=1 CANONICAL=A0A9J7GHL7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL7/entry#A0A9J7JXK6-1", "sequence": { "sequence": "MWRLRLLVLGVLAAAPAEAQANSSDGFLEFSVGKFTHLLLSRPLPQEAILRHISGNVTFLLFQIHSQYQNTTVSFTKTLLPGTSGTGNDRGLVFMLRPEQTMCTWYLETKDAKPVQTVAIPLSYSERDPIPGGCNLEFDLDIDPNIYLDYNFFETTIKFAPANLGYARGAEPPPCDVSTGQESRWRLRYDVYQYFLPEGDLTEASLLQHLQRMAQVSQVKASAVKELFIMSSFRTRPSILRLPMFLYTHTLAALSPWTVTVPLRVSTKVFSTVFAVLGIFICFFGHRFWKTELFFVGFIFLGFFFYILISRLTSLKYDVRLVLTAVAGSIGGILLVASWWRFGTLMLCMLCVGLVLGFLVSSGTFFTPLGNLNVFRDDGVFWVTFSCITLLVPVIFMGCLRILNILACGAVGSYSVVLAIDSYIFSSLSYMTLNVLRRALNTDFRAAFIGVPFQTKDFLVLAVWGMLAVSGITLQIRRERGQAPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRLTQIRELFQKEQPAGERTPLLL", "length": 543, "header": "tr|A0A9J7JXK6-1|A0A9J7JXK6_CRIGR Computationally mapped isoform of Transmembrane 7 superfamily member 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tm7sf3 PE=4 SV=1 CANONICAL=A0A9J7GHL7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"IPR037646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774481", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774481", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K006", "url": "https://www.orthodb.org/?gene=A0A9J7K006", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22045", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22045", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22045:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22045:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27936", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27936", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287058", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K006", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K006", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K006-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K006-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRRSQAPKATAADSPELSEVSWPSSSGTPSPLSTEGQSTSPPLTVIDSGDSVVAKYINRFRQAQPTSREERQPAGATPADFWWLQPKSSDISSNLAAAGAGEPEPEGRSDMTGPSPAQMYSGSLASDPLQNVKQSLNTWNSSLLDLETLSLQSRAAKLLKRSKASLSSSSLSPSDASSSSFPINLDGLSPCSVTFNPNANKNSSPKESVSGEAPGPSQARIPAPRPASSQATLPPEEDILYQWRQRRRLEQARGGAGDGTWVLPRTPAPATQPPPVPAVNLGSLGTQPDGAPPWGSVVQPPPPQAYVERAPPLAGPSPHIWAPSPHGFLWAPQANPWVSLGMVPTTLLAPTVAPLAAFPAPATTSPAAPAPISTPQVTISVPPASTPSPWAPTPTSPAPDIPQEPTNPELSSSAQPKKLGPKPRRARASSPRETSEQGTTAFESPCSQLRGALGQVVTARLFPDSLEDTVVPGLESLSPSQVEPQKVNATPPQAKGPPGPSQAQREAKSLSCKAVAASSRGRPVLRKSKGTLSAETRDPELATTPKAFALSEAQSPEFKTSEPKAGAGDAWTTAPPASGQAPSQDLLAQASRLLQAAEDSDGSEFQEDPVLQVLRAQRAELRQQKRKVDAQLSLLLNHTEDPGSSSPPASSPPGSPRMRLRREGASFEARQL", "length": 673, "header": "tr|A0A9J7GIS9-1|A0A9J7GIS9_CRIGR Isoform 1 of Proline and serine-rich protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Proser3 PE=4 SV=1 CANONICAL=A0A9J7GIS9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIS9/entry#A0A9J7GHN9-1", "sequence": { "sequence": "MDCRSQAPKATAADSPELSEVSWPSSSGTPSPLSTEGQSTSPPLTVIDSGDSVVAKYINRFRQAQPTSREERQPAGATPADFWWLQPKSSDISSNLAAGAGEPEPEGRSDMTGPSPAQMYSGSLASDPLQNVKQSLNTWNSSLLDLETLSLQSRAAKLLKRSKASLSSSSLSPSDASSSSFPINLDGLSPCSVTFNPNANKNSSPKESVSGEAPGPSQARIPAPRPASSQATLPPEEDILYQWRQRRRLEQARGGAGDGTWVLPRTPAPATQPPPVPAVNLGSLGTQPDGAPPWGSVVQPPPPQAYVERAPPLAGPSPHIWAPSPHGFLWAPQANPWVSLGMVPTTLLAPTVAPLAAFPAPATTSPAAPAPISTPQVTISVPPASTPSPWAPTPTSPAPDIPQEPTNPELSSSAQPKKLGPKPRRARASSPRETSEQGTTAFESPCSQLRGALGQVVTARLFPDSLEDTVVPGLESLSPSQVEPQKVNATPPQAKGPPGPSQAQREAKSLSCKAVAASSRGRPVLRKSKGTLSAETRDPELATTPKAFALSEAQSPEFKTSEPKAGAGDAWTTAPPASGQAPSQDLLAQASRLLQAAEDSDGSEFQEDPVLQVLRAQRAELRQQKRKVDAQLSLLLNHTEDPGSSSPPASSPPGSPRMRLRREGASFEARQL", "length": 672, "header": "tr|A0A9J7GHN9-1|A0A9J7GIS9_CRIGR Computationally mapped isoform of Proline and serine-rich protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Proser3 PE=4 SV=1 CANONICAL=A0A9J7GIS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIS9/entry#A0A9J7GIS9-1", "sequence": { "sequence": "MPRRSQAPKATAADSPELSEVSWPSSSGTPSPLSTEGQSTSPPLTVIDSGDSVVAKYINRFRQAQPTSREERQPAGATPADFWWLQPKSSDISSNLAAAGAGEPEPEGRSDMTGPSPAQMYSGSLASDPLQNVKQSLNTWNSSLLDLETLSLQSRAAKLLKRSKASLSSSSLSPSDASSSSFPINLDGLSPCSVTFNPNANKNSSPKESVSGEAPGPSQARIPAPRPASSQATLPPEEDILYQWRQRRRLEQARGGAGDGTWVLPRTPAPATQPPPVPAVNLGSLGTQPDGAPPWGSVVQPPPPQAYVERAPPLAGPSPHIWAPSPHGFLWAPQANPWVSLGMVPTTLLAPTVAPLAAFPAPATTSPAAPAPISTPQVTISVPPASTPSPWAPTPTSPAPDIPQEPTNPELSSSAQPKKLGPKPRRARASSPRETSEQGTTAFESPCSQLRGALGQVVTARLFPDSLEDTVVPGLESLSPSQVEPQKVNATPPQAKGPPGPSQAQREAKSLSCKAVAASSRGRPVLRKSKGTLSAETRDPELATTPKAFALSEAQSPEFKTSEPKAGAGDAWTTAPPASGQAPSQDLLAQASRLLQAAEDSDGSEFQEDPVLQVLRAQRAELRQQKRKVDAQLSLLLNHTEDPGSSSPPASSPPGSPRMRLRREGASFEARQL", "length": 673, "header": "tr|A0A9J7GIS9-1|A0A9J7GIS9_CRIGR Isoform 1 of Proline and serine-rich protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Proser3 PE=4 SV=1 CANONICAL=A0A9J7GIS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K006-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIS9/entry#A0A9J7K006-1", "sequence": { "sequence": "MDCRSQAPKATAADSPELSEVSWPSSSGTPSPLSTEGQSTSPPLTVIDSGDSVVAKYINRFRQAQPTSREERQPAGATPADFWWLQPKSSDISSNLAAAGAGEPEPEGRSDMTGPSPAQMYSGSLASDPLQNVKQSLNTWNSSLLDLETLSLQSRAAKLLKRSKASLSSSSLSPSDASSSSFPINLDGLSPCSVTFNPNANKNSSPKESVSGEAPGPSQARIPAPRPASSQATLPPEEDILYQWRQRRRLEQARGGAGDGTWVLPRTPAPATQPPPVPAVNLGSLGTQPDGAPPWGSVVQPPPPQAYVERAPPLAGPSPHIWAPSPHGFLWAPQANPWVSLGMVPTTLLAPTVAPLAAFPAPATTSPAAPAPISTPQVTISVPPASTPSPWAPTPTSPAPDIPQEPTNPELSSSAQPKKLGPKPRRARASSPRETSEQGTTAFESPCSQLRGALGQVVTARLFPDSLEDTVVPGLESLSPSQVEPQKVNATPPQAKGPPGPSQAQREAKSLSCKAVAASSRGRPVLRKSKGTLSAETRDPELATTPKAFALSEAQSPEFKTSEPKAGAGDAWTTAPPASGQAPSQDLLAQASRLLQAAEDSDGSEFQEDPVLQVLRAQRAELRQQKRKVDAQLSLLLNHTEDPGSSSPPASSPPGSPRMRLRREGASFEARQL", "length": 673, "header": "tr|A0A9J7K006-1|A0A9J7K006_CRIGR Computationally mapped isoform of Proline and serine-rich protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Proser3 PE=4 SV=1 CANONICAL=A0A9J7GIS9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 29, "start_aa": "Thr", "end_pos": 29, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr29", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 387, "start_aa": "Thr", "end_pos": 387, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr387", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 394, "start_aa": "Thr", "end_pos": 394, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr394", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 396, "start_aa": "Thr", "end_pos": 396, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr396", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 78, "start_aa": "Thr", "end_pos": 78, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr78", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHN9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHN9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774481", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774481", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 29, 78, 387, 394, 396 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 489, "end_pos": 491 }, { "start_pos": 638, "end_pos": 640 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJ23-1", "uniprot_ac": "A0A9J7GJ23", "uniprot_id": "A0A9J7GJ23_CRIGR", "mass": { "chemical_mass": 442778.0, "monoisotopic_mass": 442778.0 }, "refseq": { "ac": "XP_027287301", "name": "vacuolar protein sorting-associated protein 13B isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287301" }, "gene_names": [ { "name": "LOC100763509", "type": "recommended", "evidence": [ { "id": "A0A9J7GJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" } ] }, { "name": "LOC100763509", "type": "synonym", "evidence": [ { "id": "XP_027287301", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287301" } ] } ], "protein_names": [ { "name": "Vacuolar protein sorting-associated protein 13B isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7GJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#names_and_taxonomy" } ] }, { "name": "vacuolar protein sorting-associated protein 13B isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027287301", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287301" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287301", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287301" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763509", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23", "locus": {} } ], "crossref": [ { "id": "100763509", "url": "https://www.ncbi.nlm.nih.gov/gene/100763509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763509", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJ23", "url": "https://www.orthodb.org/?gene=A0A9J7GJ23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GL21", "url": "https://www.orthodb.org/?gene=A0A9J7GL21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12517", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12517", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12517:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12517:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287301", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287301", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H623", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H623", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H623-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H623-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA65-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1U1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1U1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWSQLKPEKGIGTGGVLTESERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEILVCGHSLEVNITTNLDFFLSVTQVQLLHQLIAANMTGSEPPDKATETSKQEQKKMDTFDGGIAETSSRYSGAQDSGIGSDSVKIRIVQIEQCSGASQHRLARPSHQSSIVKNLNFIPFDIFITASRISLMTYSLLPIPRFKLPEQKEDGKTGQSPLTPPEADSDVAKPTQACVSMMTAEDLFSHSLSSGKKPRVLSLESLHAATRSSARQALGVTVVRQPGRRGTGDLELHPFLYLIVSQPSLLLSCHHRKQRVEISVFDAVLKGVAPDYKCTDPGKTLPEALDYNTVWLQTVPGETDCKSGIPPSLVTLQIKDFLNGPADINLDVSKPLKANLSFTKLDQINHFLKKIKKTHSFAHGKEPSAPSDTVLSKDEPPISKGYRGKPCKPKVHSDGVQKTSLQENMWRAVSCFQKVSVHTTQIVVSMETAPHPHKPCVLASLSNLDGSLSVKAAQKVPGLSLGSSLILSISDLLLKTSLKERSRTLIGPFSTTVSLEAKWCKHSGNPGPQQSIPKIAMDLRGGLLQIFWGQEHLNCLALLHELLSGYLKEEGKLEVPAPESTPQMPSPMDKTQAFKSEQSSDDLRTGVFQYIQDAEPLKLPGTYEVLFCNETEESPGMMLWRYPEPRVLILVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDVNLVSDQKKLVSSDLWRIVLNNNQNAADDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLGISFQCAHLELRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMVISFKEPNLYLRQWNSDSVCQEIRFSSKVDCKLLECRNVTMQSVVNPFCVSGQMSLSSDGEQKMLDGTVIMDSVLVNFGQHAVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVRPLSGVQKQILICGRQVICSYLSQSIELKVVQHHIGQDGQAVVREHFDCLTAKTKLPSYILENSELTELCVKAKGDEDWSRDVCLEPKASDYSTVIQVPASNSSIIYVWCTVLTLEPNSQVQQRMVVFSPLFIMRSHLPDPIIIHLEKRSLGLRETQIIPGKGQENPLQNAEPDLVHHLTFQAREEHGPSDCAVPIATALIKQIATKTQPGGTVSEMLDEFYGPEKSPEPIWPYSKKDSDRNEQLSQWDSPMRVKLSLWKPYVRTLLIELLPWALLINQSRWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNVMSPKWKDSANGEVVTLDEEALVDAEIRLGAFPGHQKLCQFCISSMVQHGIQIIQIEDKTTVINNTPYQIFYKPQLSVASPCSGKEHFHVPDGATFSICPGGEHPAMKSSSLPCWDFLPDVGPSMDTAALQRQILLGFSPAPGADSSQCWSLPAVVRREFPRQSVAVPFGTLRENGFCTRAVALTYQEHFGVTYLTLSEDPSPRVIFHNRCPVAMLVKENMREIPKFEVYCKKIPPESSVHHELYHQIMGYPDCKTKDLLPSLLLRIETAGEVVVEWSDAVDINSQGTQVVFLTGFGYVYVDIAHQCGTVIITVAPEGKAGPILTGIHRAPEKTVTFKLFLTRLSLAVSDDLTHHKTSSELLRLTADNIFLHVCPAPGVLPGEEPPAALLQLLSVEVYVGDLQLDNQLHNKSNFHFAVLVCQGERPEPVPFSRVQSLLMSGKDLEEYKGSCFIKLCLTGSEGTDCLFDVSEFSFELKPARLYVEDTFVYYVKTLFDTYLPHSRLAGHPARPCTGRQVLPVQVRQHARALVNPVKLRRLVIQPVSLLVSIHASLKLYIASDHTPLSFSVFERGPVFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRYQPRDLHADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEIDCAQDTKQNNLLTVQLKQPRVACDVEMDGARERLSEQQFNRLVDYIAKTSCHLAPSCNPMQTACSVVAVEPPPATVKTYRYLVDPPFAQVFISKFTMVKNKALRKGFP", "length": 3992, "header": "tr|A0A9J7GJ23-1|A0A9J7GJ23_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13B isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=3 SV=1 CANONICAL=A0A9J7GJ23-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7GHQ0-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQCPVHE", "length": 1585, "header": "tr|A0A9J7GHQ0-1|A0A9J7GJ23_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=3 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7GHY6-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWSQLKPEKGIGTGGVLTESERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEILVCGHSLEVNITTNLDFFLSVTQVQLLHQLIAANMTGSEPPDKATETSKQEQKKMDTFDGGIAETSSRYSGAQDSGIGSDSVKIRIVQIEQCSGASQHRLARPSHQSSIVKNLNFIPFDIFITASRISLMTYSLLPIPRFKLPEQKEDGKTGQSPLTPPEADSDVAKPTQACVSMMTAEDLFSHSLSSGKKPRVLSLESLHAATRSSARQALGVTVVRQPGRRGTGDLELHPFLYLIVSQPSLLLSCHHRKQRVEISVFDAVLKGVAPDYKCTDPGKTLPEALDYNTVWLQTVPGETDCKSGIPPSLVTLQIKDFLNGPADINLDVSKPLKANLSFTKLDQINHFLKKIKKTHSFAHGKEPSAPSDTVLSKDEPPISKGYRGKPCKPKVHSDGVQKTSLQENMWRAVSCFQKVSVHTTQIVVSMETAPHPHKPCVLASLSNLDGSLSVKAAQKVPGLSLGSSLILSISDLLLKTSLKERSRTLIGPFSTTVSLEAKWCKHSGNPGPQQSIPKIAMDLRGGLLQIFWGQEHLNCLALLHELLSGYLKEEGKLEVPAPESTPQMPSPMDKTQAFKSEQSSDDLRTGVFQYIQDAEPLKLPGTYEVLFCNETEESPGMMLWRYPEPRVLILVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDVNLVSDQKKLVSSDLWRIVLNNNQNAADDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLGISFQCAHLELRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMVISFKEPNLYLRQWNSDSVCQEIRFSSKVDCKLLECRNVTMQSVVNPFCVSGQMSLSSDGEQKMLDGTVIMDSVLVNFGQHAVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVRPLSGVQKQILICGRQVICSYLSQSIELKVVQHHIGQDGQAVVREHFDCLTAKTKLPSYILENSELTELCVKAKGDEDWSRDVCLEPKASDYSTVIQVPASNSSIIYVWCTVLTLEPNSQVQQRMVVFSPLFIMRSHLPDPIIIHLEKRSLGLRETQIIPGKGQENPLQNAEPDLVHHLTFQAREEHGPSDCAVPIATALIKQIATKTQPGGTVSEMLDEFYGPEKSPEPIWPYSKKDSDRNEQLSQWDSPMRVKLSLWKPYVRTLLIELLPWALLINQSRWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNVMSPKWKDSANGEVVTLDEEALVDAEIRLGAFPGHQKLCQFCISSMVQHGIQIIQIEDKTTVINNTPYQIFYKPQLSVASPCSGKEHFHVPDGATFSICPGGEHPAMKSSSLPCWDFLPDVGPSMDTAALQRQILLGFSPAPGADSSQCWSLPAVVRREFPRQSVAVPFGTLRENGFCTRAVALTYQEHFGVTYLTLSEDPSPRVIFHNRCPVAMLVKENMREIPKFEVYCKKIPPESSVHHELYHQIMGYPDCKTKDLLPSLLLRIETAGEVVVEWSDAVDINSQGTQAGSGTFDPTRSRFPAACSAVNLEGLTPR", "length": 3337, "header": "tr|A0A9J7GHY6-1|A0A9J7GHY6_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=3 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7GJ23-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWSQLKPEKGIGTGGVLTESERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEILVCGHSLEVNITTNLDFFLSVTQVQLLHQLIAANMTGSEPPDKATETSKQEQKKMDTFDGGIAETSSRYSGAQDSGIGSDSVKIRIVQIEQCSGASQHRLARPSHQSSIVKNLNFIPFDIFITASRISLMTYSLLPIPRFKLPEQKEDGKTGQSPLTPPEADSDVAKPTQACVSMMTAEDLFSHSLSSGKKPRVLSLESLHAATRSSARQALGVTVVRQPGRRGTGDLELHPFLYLIVSQPSLLLSCHHRKQRVEISVFDAVLKGVAPDYKCTDPGKTLPEALDYNTVWLQTVPGETDCKSGIPPSLVTLQIKDFLNGPADINLDVSKPLKANLSFTKLDQINHFLKKIKKTHSFAHGKEPSAPSDTVLSKDEPPISKGYRGKPCKPKVHSDGVQKTSLQENMWRAVSCFQKVSVHTTQIVVSMETAPHPHKPCVLASLSNLDGSLSVKAAQKVPGLSLGSSLILSISDLLLKTSLKERSRTLIGPFSTTVSLEAKWCKHSGNPGPQQSIPKIAMDLRGGLLQIFWGQEHLNCLALLHELLSGYLKEEGKLEVPAPESTPQMPSPMDKTQAFKSEQSSDDLRTGVFQYIQDAEPLKLPGTYEVLFCNETEESPGMMLWRYPEPRVLILVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDVNLVSDQKKLVSSDLWRIVLNNNQNAADDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLGISFQCAHLELRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMVISFKEPNLYLRQWNSDSVCQEIRFSSKVDCKLLECRNVTMQSVVNPFCVSGQMSLSSDGEQKMLDGTVIMDSVLVNFGQHAVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVRPLSGVQKQILICGRQVICSYLSQSIELKVVQHHIGQDGQAVVREHFDCLTAKTKLPSYILENSELTELCVKAKGDEDWSRDVCLEPKASDYSTVIQVPASNSSIIYVWCTVLTLEPNSQVQQRMVVFSPLFIMRSHLPDPIIIHLEKRSLGLRETQIIPGKGQENPLQNAEPDLVHHLTFQAREEHGPSDCAVPIATALIKQIATKTQPGGTVSEMLDEFYGPEKSPEPIWPYSKKDSDRNEQLSQWDSPMRVKLSLWKPYVRTLLIELLPWALLINQSRWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNVMSPKWKDSANGEVVTLDEEALVDAEIRLGAFPGHQKLCQFCISSMVQHGIQIIQIEDKTTVINNTPYQIFYKPQLSVASPCSGKEHFHVPDGATFSICPGGEHPAMKSSSLPCWDFLPDVGPSMDTAALQRQILLGFSPAPGADSSQCWSLPAVVRREFPRQSVAVPFGTLRENGFCTRAVALTYQEHFGVTYLTLSEDPSPRVIFHNRCPVAMLVKENMREIPKFEVYCKKIPPESSVHHELYHQIMGYPDCKTKDLLPSLLLRIETAGEVVVEWSDAVDINSQGTQVVFLTGFGYVYVDIAHQCGTVIITVAPEGKAGPILTGIHRAPEKTVTFKLFLTRLSLAVSDDLTHHKTSSELLRLTADNIFLHVCPAPGVLPGEEPPAALLQLLSVEVYVGDLQLDNQLHNKSNFHFAVLVCQGERPEPVPFSRVQSLLMSGKDLEEYKGSCFIKLCLTGSEGTDCLFDVSEFSFELKPARLYVEDTFVYYVKTLFDTYLPHSRLAGHPARPCTGRQVLPVQVRQHARALVNPVKLRRLVIQPVSLLVSIHASLKLYIASDHTPLSFSVFERGPVFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRYQPRDLHADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEIDCAQDTKQNNLLTVQLKQPRVACDVEMDGARERLSEQQFNRLVDYIAKTSCHLAPSCNPMQTACSVVAVEPPPATVKTYRYLVDPPFAQVFISKFTMVKNKALRKGFP", "length": 3992, "header": "tr|A0A9J7GJ23-1|A0A9J7GJ23_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13B isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=3 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GL21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7GL21-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGAKQSSWKPVMKHVF", "length": 852, "header": "tr|A0A9J7GL21-1|A0A9J7GL21_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=4 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GMJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7GMJ7-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRQLQNSWTALINSMDFSL", "length": 1401, "header": "tr|A0A9J7GMJ7-1|A0A9J7GMJ7_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=4 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H623-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7H623-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWSQLKPEKGIGTGGVLTESERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEILVCGHSLEVNITTNLDFFLSVTQVQLLHQLIAANMTGSEPPDKATETSKQEQKKMDTFDGGIAETSSRYSGAQDSGIGSDSVKIRIVQIEQCSGASQHRLARPSHQSSIVKNLNFIPFDIFITASRISLMTYSLLPIPRFKLPEQKEDGKTGQSPLTPPEADSDVAKPTQACVSMMTAEDLFSHSLSSGKKPRVLSLESLHAATRSSARQALGVTVVRQPGRRGTGDLELHPFLYLIVSQPSLLLSCHHRKQRVEISVFDAVLKGVAPDYKCTDPGKTLPEALDYNTVWLQTVPGETDCKSGIPPSLVTLQIKDFLNGPADINLDVSKPLKANLSFTKLDQINHFLKKIKKTHSFAHGKEPSAPSDTVLSKDEPPISKGYRGKPCKPKVHSDGVQKTSLQENMWRAVSCFQKVSVHTTQIVVSMETAPHPHKPCVLASLSNLDGSLSVKAAQKVPGLSLGSSLILSISDLLLKTSLKERSRTLIGPFSTTVSLEAKWCKHSGNPGPQQSIPKIAMDLRGGLLQIFWGQEHLNCLALLHELLSGYLKEEGKLEVPAPESTPQMPSPMDKTQAFKSEQSSDDLRTGVFQYIQDAEPLKLPGTYEVLFCNETEESPGMMLWRYPEPRVLILVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDVNLVSDQKKLVSSDLWRIVLNNNQNAADDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLGISFQCAHLELRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMVISFKEPNLYLRQWNSDSVCQEIRFSSKVDCKLLECRNVTMQSVVNPFCVSGQMSLSSDGEQKMLDGTVIMDSVLVNFGQHAVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVRPLSGVQKQILICGRQVICSYLSQSIELKVVQHHIGQDGQAVVREHFDCLTAKTKLPSYILENSELTELCVKAKGDEDWSRDVCLEPKASDYSTVIQVPASNSSIIYVWCTVLTLEPNSQVQQRMVVFSPLFIMRSHLPDPIIIHLEKRSLGLRETQIIPGKGQENPLQNAEPDLVHHLTFQAREEHGPSDCAVPIATALIKQIATKTQPGGTVSEMLDEFYGPEKSPEPIWPYSKKDSDRNEQLSQWDSPMRVKLSLWKPYVRTLLIELLPWALLINQSRWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNVMSPKWKDSANGEVVTLDEEALVDAEIRLGAFPGHQKLCQFCISSMVQHGIQIIQIEDKTTVINNTPYQIFYKPQLSVASPCSGKEHFHVPDGATFSICPGGEHPAMKSSSLPCWDFLPDVGPSMDTAALQRQILLGFSPAPGADSSQCWSLPAVVRREFPRQSVAVPFGTLRENGFCTRAVALTYQEHFGVTYLTLSEDPSPRVIFHNRCPVAMLVKENMREIPKFEVYCKKIPPESSVHHELYHQIMGYPDCKTKDLLPSLLLRIETAGEVVVEWSDAVDINSQGTQPVQL", "length": 3313, "header": "tr|A0A9J7H623-1|A0A9J7H623_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=3 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7HA65-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQPVVSVPLVPSVNRRKDEELSAGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLHIHEGCRHPEERMKEFIGILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSTPGTLVLCLPQIKIVSAGHKCLQPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPPGPDGRHSFVVCLHVDLESVEIKCSNPQVQLFYELVDTMSKVWNRIQKRGNLGSSSVYPETMAGPVPSSPVRSSVGTALPDTSTCSPSADIVTTTEGDSVQAGDDSPFSDSVTLEQTTSSIGGSSGRVSLWMQWVLPKLTVKLFAPDTGNKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNVDHYQSRPGEGWQSGHFEGVFLQCKEKPLTTTKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRGFHRLSEGFTDGSPHFLHEILLSAQAFDIVLCFPLLNAMASIFQTKLPRAQKEKRKSTGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETRSAVEVNQAAKEDTLVLKVGSVAMAPQADNPLGRPVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWSQLKPEKGIGTGGVLTESERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEILVCGHSLEVNITTNLDFFLSVTQVQLLHQLIAANMTGSEPPDKATETSKQEQKKMDTFDGGIAETSSRYSGAQDSGIGSDSVKIRIVQIEQCSGASQHRLARPSHQSSIVKNLNFIPFDIFITASRISLMTYSLLPIPRFKLPEQKEDGKTGQSPLTPPEADSDVAKPTQACVSMMTAEDLFSHSLSSGKKPRVLSLESLHAATRSSARQALGVTVVRQPGRRGTGDLELHPFLYLIVSQPSLLLSCHHRKQRVEISVFDAVLKGVAPDYKCTDPGKTLPEALDYNTVWLQTVPGETDCKSGIPPSLVTLQIKDFLNGPADINLDVSKPLKANLSFTKLDQINHFLKKIKKTHSFAHGKEPSAPSDTVLSKDEPPISKGYRGKPCKPKVHSDGVQKTSLQENMWRAVSCFQKVSVHTTQIVVSMETAPHPHKPCVLASLSNLDGSLSVKAAQKVPGLSLGSSLILSISDLLLKTSLKERSRTLIGPFSTTVSLEAKWCKHSGNPGPQQSIPKIAMDLRGGLLQIFWGQEHLNCLALLHELLSGYLKEEGKLEVPAPESTPQMPSPMDKTQAFKSEQSSDDLRTGVFQYIQDAEPLKLPGTYEVLFCNETEESPGMMLWRYPEPRVLILVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDVNLVSDQKKLVSSDLWRIVLNNNQNAADDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLGISFQCAHLELRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMVISFKEPNLYLRQWNSDSVCQEIRFSSKVDCKLLECRNVTMQSVVNPFCVSGQMSLSSDGEQKMLDGTVIMDSVLVNFGQHAVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQSQAFRTDHLLSKEHP", "length": 2658, "header": "tr|A0A9J7HA65-1|A0A9J7HA65_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=4 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23/entry#A0A9J7K1U1-1", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCSSNSTNRSNAENTKSSTKPRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRVMQLGIALYYGEIGNLKDSDTEDPACHSKDAAGNIAGAEDETRVDTQYPAQYKGQELYSQDCEEPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPASTLHQQKVPTLKDPIVSVGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGIMGVRDFEEHTNRSEMEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDGAHHKETYTEMAGMQRFGAFYMDYLYTVEHNSGKGPVNQQDFPSGKNEDLGIVQEKSTKSLVIGPLDLRLDSSAVHRILKMVVCALEHEYEPYSGLKPESKDEKETVPSPEELAALEEYIPTRHTSVTVLRCTCTIFMAEFNLLDRLLPVIMGGKNSSNFTNAANFQSLRPLPSIQIVVDKINLEHSVPMYAEQLAHVVSSLSQPSDNLLHYCYVHCYLKVFGFQAGLTSLSHGGSYFSPVPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTVLLQAIYQSWSHIGNAASSTVNEALMSEAFQTPGVKSKNPLPTLEGSIQNAELKYCSTALVRCASGTLGSIKICAKAPGDNGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLVAFTVQVPQSMDDCHHSGAVFLCSVQGLAVNIDPVLYTWVIYQPQKRTSRHMQQLPYRSRTHAPFLRTFCFLCLVSVSTPCSPVLLFTSICLTDTKVRKMLSLKAPLPLGHLVHLRLSESTERAVLVMAVPASSIQ", "length": 1059, "header": "tr|A0A9J7K1U1-1|A0A9J7K1U1_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13B isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC100763509 PE=4 SV=1 CANONICAL=A0A9J7GJ23-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1108, "start_aa": "Thr", "end_pos": 1108, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1108", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1849, "start_aa": "Thr", "end_pos": 1849, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1849", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763509", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763509", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1080, "end_pos": 1082, "annotation": "n_glycosylation_sequon" }, { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1523, "end_pos": 1525, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1702, "end_pos": 1704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1726, "end_pos": 1728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2025, "end_pos": 2027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2299, "end_pos": 2301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2329, "end_pos": 2331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2532, "end_pos": 2534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2607, "end_pos": 2609, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2788, "end_pos": 2790, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2964, "end_pos": 2966, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3084, "end_pos": 3086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3430, "end_pos": 3432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" }, { "id": "PF12624", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chorein N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 1521, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" }, { "id": "PF25033", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VPS13-like middle region", "eco_id": "ECO_0000259", "start_pos": 1530, "end_pos": 2542, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7GJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ23" }, { "id": "PF25036", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Vacuolar protein sorting-associated protein 13 VPS13 adaptor binding", "eco_id": "ECO_0000259", "start_pos": 2602, "end_pos": 2683, "start_aa": "His", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1108, 1849 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 1080, "end_pos": 1082 }, { "start_pos": 109, "end_pos": 111 }, { "start_pos": 1523, "end_pos": 1525 }, { "start_pos": 1702, "end_pos": 1704 }, { "start_pos": 1726, "end_pos": 1728 }, { "start_pos": 172, "end_pos": 174 }, { "start_pos": 2025, "end_pos": 2027 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 2299, "end_pos": 2301 }, { "start_pos": 2329, "end_pos": 2331 }, { "start_pos": 2532, "end_pos": 2534 }, { "start_pos": 2607, "end_pos": 2609 }, { "start_pos": 2788, "end_pos": 2790 }, { "start_pos": 2964, "end_pos": 2966 }, { "start_pos": 3084, "end_pos": 3086 }, { "start_pos": 3430, "end_pos": 3432 }, { "start_pos": 470, "end_pos": 472 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 506, "end_pos": 508 }, { "start_pos": 671, "end_pos": 673 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 794, "end_pos": 796 }, { "start_pos": 910, "end_pos": 912 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIU5-1", "uniprot_ac": "A0A9J7GIU5", "uniprot_id": "A0A9J7GIU5_CRIGR", "mass": { "chemical_mass": 96501.0, "monoisotopic_mass": 96501.0 }, "refseq": { "ac": "XP_027287108", "name": "uncharacterized protein ZSWIM9 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287108" }, "gene_names": [ { "name": "Zswim9", "type": "recommended", "evidence": [ { "id": "A0A9J7GIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5" } ] }, { "name": "Zswim9", "type": "synonym", "evidence": [ { "id": "XP_027287108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287108" } ] } ], "protein_names": [ { "name": "Uncharacterized protein ZSWIM9 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein ZSWIM9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287108" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287108" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zswim9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766500", "url": "https://www.ncbi.nlm.nih.gov/gene/100766500", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049218", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049218", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766500", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GIU5", "url": "https://www.orthodb.org/?gene=A0A9J7GIU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47086", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47086", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47086:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47086:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20784", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20784", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGSGPAPVLPVDEPGPKMELTEPPPDTAVQKEEQELLDRAFFSWAEFSRFFDKWCQQRLVVFSVKSSTHVARSPWASTPPLYRLIHVLKYSYVLLVCKDVRVPNQSPAWPPQPSCPAFITVKLSPLRDRLVVSECQLTHSHPACPREFAYHFRPGHLLANACLPVRITNKISKQFVAPADVRRLLSHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRARQTACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGAHGDRALLESEPRNRAQTEKHKVRGAESSNWGGPERDSEKGKGFQSRDPQGVWSENQKVRGPEGTGAPLEKEHLRGPEVRDWRGSQVEDGRARVLGPADRRGTQVEPEKTDSLEGSPWRGVRLQEEQALLANPHDWKGPQFEMDKGVDIRKWKEARAEKPLELVPENGEQRGPQWGGEGQKELEIAEEKDGRFPVKRRRGLEDIVVVHLEGARAAGIANGGEGGPQTVSSKNGGQQMEFGDPEGRLPGLGNGVLCTAPVRTVLEGNPEWAVARVESLATGEIVKGGGEEGPGEPKRLCRPCRDEGVDCEPLAKFRAACGPELADLVAEELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTHCSCSIHAARRLPCRHLFAARLLTGAALFHMDLLRDCWGRSQEP", "length": 872, "header": "tr|A0A9J7GIU5-1|A0A9J7GIU5_CRIGR Isoform 1 of Uncharacterized protein ZSWIM9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim9 PE=4 SV=1 CANONICAL=A0A9J7GIU5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5/entry#A0A9J7GHQ9-1", "sequence": { "sequence": "MASKGPKMELTEPPPDTAVQKEEQELLDRAFFSWAEFSRFFDKWCQQRLVVFSVKSSTHVARSPWASTPPLYRLIHVLKYSYVLLVCKDVRVPNQSPAWPPQPSCPAFITVKLSPLRDRLVVSECQLTHSHPACPREFAYHFRPGHLLANACLPVRITNKISKQFVAPADVRRLLSHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRARQTACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGAHGDRALLESEPRNRAQTEKHKVRGAESSNWGGPERDSEKGKGFQSRDPQGVWSENQKVRGPEGTGAPLEKEHLRGPEVRDWRGSQVEDGRARVLGPADRRGTQVEPEKTDSLEGSPWRGVRLQEEQALLANPHDWKGPQFEMDKGVDIRKWKEARAEKPLELVPENGEQRGPQWGGEGQKELEIAEEKDGRFPVKRRRGLEDIVVVHLEGARAAGIANGGEGGPQTVSSKNGGQQMEFGDPEGRLPGLGNGVLCTAPVRTVLEGNPEWAVARVESLATGEIVKGGGEEGPGEPKRLCRPCRDEGVDCEPLAKFRAACGPELADLVAEELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTHCSCSIHAARRLPCRHLFAARLLTGAALFHMDLLRDCWGRSQEP", "length": 861, "header": "tr|A0A9J7GHQ9-1|A0A9J7GIU5_CRIGR Computationally mapped isoform of Uncharacterized protein ZSWIM9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim9 PE=4 SV=1 CANONICAL=A0A9J7GIU5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5/entry#A0A9J7GIU5-1", "sequence": { "sequence": "MLGSGPAPVLPVDEPGPKMELTEPPPDTAVQKEEQELLDRAFFSWAEFSRFFDKWCQQRLVVFSVKSSTHVARSPWASTPPLYRLIHVLKYSYVLLVCKDVRVPNQSPAWPPQPSCPAFITVKLSPLRDRLVVSECQLTHSHPACPREFAYHFRPGHLLANACLPVRITNKISKQFVAPADVRRLLSHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRARQTACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGAHGDRALLESEPRNRAQTEKHKVRGAESSNWGGPERDSEKGKGFQSRDPQGVWSENQKVRGPEGTGAPLEKEHLRGPEVRDWRGSQVEDGRARVLGPADRRGTQVEPEKTDSLEGSPWRGVRLQEEQALLANPHDWKGPQFEMDKGVDIRKWKEARAEKPLELVPENGEQRGPQWGGEGQKELEIAEEKDGRFPVKRRRGLEDIVVVHLEGARAAGIANGGEGGPQTVSSKNGGQQMEFGDPEGRLPGLGNGVLCTAPVRTVLEGNPEWAVARVESLATGEIVKGGGEEGPGEPKRLCRPCRDEGVDCEPLAKFRAACGPELADLVAEELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTHCSCSIHAARRLPCRHLFAARLLTGAALFHMDLLRDCWGRSQEP", "length": 872, "header": "tr|A0A9J7GIU5-1|A0A9J7GIU5_CRIGR Isoform 1 of Uncharacterized protein ZSWIM9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim9 PE=4 SV=1 CANONICAL=A0A9J7GIU5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5/entry#A0A9J7GKU1-1", "sequence": { "sequence": "MELTEPPPDTAVQKEEQELLDRAFFSWAEFSRFFDKWCQQRLVVFSVKSSTHVARSPWASTPPLYRLIHVLKYSYVLLVCKDVRVPNQSPAWPPQPSCPAFITVKLSPLRDRLVVSECQLTHSHPACPREFAYHFRPGHLLANACLPVRITNKISKQFVAPADVRRLLSHCKGPDHGVLDALQVLEGLFRTDPEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGALDLMAVLCVDSAGRARQTACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQGLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPRHDMWVRFRAYEATRDLDACALVRGHRRRLLRRLNPSHSVAQCLRDLVAMQWADATGEAASEGAHGDRALLESEPRNRAQTEKHKVRGAESSNWGGPERDSEKGKGFQSRDPQGVWSENQKVRGPEGTGAPLEKEHLRGPEVRDWRGSQVEDGRARVLGPADRRGTQVEPEKTDSLEGSPWRGVRLQEEQALLANPHDWKGPQFEMDKGVDIRKWKEARAEKPLELVPENGEQRGPQWGGEGQKELEIAEEKDGRFPVKRRRGLEDIVVVHLEGARAAGIANGGEGGPQTVSSKNGGQQMEFGDPEGRLPGLGNGVLCTAPVRTVLEGNPEWAVARVESLATGEIVKGGGEEGPGEPKRLCRPCRDEGVDCEPLAKFRAACGPELADLVAEELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTHCSCSIHAARRLPCRHLFAARLLTGAALFHMDLLRDCWGRSQEP", "length": 854, "header": "tr|A0A9J7GKU1-1|A0A9J7GKU1_CRIGR Computationally mapped isoform of Uncharacterized protein ZSWIM9 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zswim9 PE=4 SV=1 CANONICAL=A0A9J7GIU5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 285, "start_aa": "Thr", "end_pos": 285, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr285", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHQ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286784", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286784" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837306", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHV1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837306", "url": "https://www.ncbi.nlm.nih.gov/gene/113837306", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837306", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837306", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHV1", "url": "https://www.orthodb.org/?gene=A0A9J7GHV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22674", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22674", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22674:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22674:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07693", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07693", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286784", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286784", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5P4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5P4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKNYNAHFTKSARTPNEQYFLDPELGHQKGCCRQWYPDSVATHAHGPCQLRPQAHWQQAYRSHRGGSSCRRCPQPLILQRQQQQQQRQRQRQPPPLPPSPLRQRLCPVRGAQKGSPAIAAARMGPASAPQPATPSSPTAVSAMASSGPALPPAAGALLEPSEPTEARPLPAPPACGSFTSYGADILTEDDVYCSCLAKTLCHVPVPVTVGFYAPFGCRLHMMLDKIMTLMQQEAAQRESEELQRVQWRPRRVRGWGVPQLLWFLVFLQPVITELHLRRRNVRFLFIRFSAWQYAGTDKLWAGLVTTLCEGIRHHYGALPFSVYSVLGNKPCGPRDGLCQREWHCRRRVCLALLALLAALCLGIGLLYLSLGGHAPGHAAPGVLRALGGAATTLSGSGLLMAVYSVGKHLFVSQRKKIERLVSREKFGSQLGFMCEVKKEVELLTDFLCFLEIYQRRRLRVVLEVTGLDTCYPERVVGVLNAINTLLSDSHAPFIFILVVDPSILAACLESASNMKGTADNGYLFLNRTVTLPFSVPVMGRRTKLQFLHDAVRSRDDLLFRELSRQLQPPGQAAGAAGEGEQLLLAVETQAEGERAQGRVDAEAARRIQEALCCLHDDSDCLYEYVPDNVVSMRRIVNTVPITVRLLQLQQQQQPDRLGPTPRHAVAWVVLANQWPCRLSWVLQCLEDRQQAGGEPEGRARLWDVFCDNSRELHTMTKALQNVLDLDGDPELFERFLGTDFPFTVAEAQSLLRCTVNLDHSIRRRMGLIRAVSALKPPSPPKSPSRDDPQASRSASNAAAAAGTSQVAHGSGHSREAHHPRDRTHGVKPRPMA", "length": 833, "header": "tr|A0A9J7GHV1-1|A0A9J7GHV1_CRIGR Isoform 1 of NTPase KAP family P-loop domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113837306 PE=4 SV=1 CANONICAL=A0A9J7GHV1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1/entry#A0A9J7GHV1-1", "sequence": { "sequence": "MQKNYNAHFTKSARTPNEQYFLDPELGHQKGCCRQWYPDSVATHAHGPCQLRPQAHWQQAYRSHRGGSSCRRCPQPLILQRQQQQQQRQRQRQPPPLPPSPLRQRLCPVRGAQKGSPAIAAARMGPASAPQPATPSSPTAVSAMASSGPALPPAAGALLEPSEPTEARPLPAPPACGSFTSYGADILTEDDVYCSCLAKTLCHVPVPVTVGFYAPFGCRLHMMLDKIMTLMQQEAAQRESEELQRVQWRPRRVRGWGVPQLLWFLVFLQPVITELHLRRRNVRFLFIRFSAWQYAGTDKLWAGLVTTLCEGIRHHYGALPFSVYSVLGNKPCGPRDGLCQREWHCRRRVCLALLALLAALCLGIGLLYLSLGGHAPGHAAPGVLRALGGAATTLSGSGLLMAVYSVGKHLFVSQRKKIERLVSREKFGSQLGFMCEVKKEVELLTDFLCFLEIYQRRRLRVVLEVTGLDTCYPERVVGVLNAINTLLSDSHAPFIFILVVDPSILAACLESASNMKGTADNGYLFLNRTVTLPFSVPVMGRRTKLQFLHDAVRSRDDLLFRELSRQLQPPGQAAGAAGEGEQLLLAVETQAEGERAQGRVDAEAARRIQEALCCLHDDSDCLYEYVPDNVVSMRRIVNTVPITVRLLQLQQQQQPDRLGPTPRHAVAWVVLANQWPCRLSWVLQCLEDRQQAGGEPEGRARLWDVFCDNSRELHTMTKALQNVLDLDGDPELFERFLGTDFPFTVAEAQSLLRCTVNLDHSIRRRMGLIRAVSALKPPSPPKSPSRDDPQASRSASNAAAAAGTSQVAHGSGHSREAHHPRDRTHGVKPRPMA", "length": 833, "header": "tr|A0A9J7GHV1-1|A0A9J7GHV1_CRIGR Isoform 1 of NTPase KAP family P-loop domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113837306 PE=4 SV=1 CANONICAL=A0A9J7GHV1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1/entry#A0A9J7H5P4-1", "sequence": { "sequence": "MQKNYNAHFTKSARTPNEQYFLDPELGHQKDILTEDDVYCSCLAKTLCHVPVPVTVGFYAPFGCRLHMMLDKIMTLMQQEAAQRESEELQRVQWRPRRVRGWGVPQLLWFLVFLQPVITELHLRRRNVRFLFIRFSAWQYAGTDKLWAGLVTTLCEGIRHHYGALPFSVYSVLGNKPCGPRDGLCQREWHCRRRVCLALLALLAALCLGIGLLYLSLGGHAPGHAAPGVLRALGGAATTLSGSGLLMAVYSVGKHLFVSQRKKIERLVSREKFGSQLGFMCEVKKEVELLTDFLCFLEIYQRRRLRVVLEVTGLDTCYPERVVGVLNAINTLLSDSHAPFIFILVVDPSILAACLESASNMKGTADNGYLFLNRTVTLPFSVPVMGRRTKLQFLHDAVRSRDDLLFRELSRQLQPPGQAAGAAGEGEQLLLAVETQAEGERAQGRVDAEAARRIQEALCCLHDDSDCLYEYVPDNVVSMRRIVNTVPITVRLLQLQQQQQPDRLGPTPRHAVAWVVLANQWPCRLSWVLQCLEDRQQAGGEPEGRARLWDVFCDNSRELHTMTKALQNVLDLDGDPELFERFLGTDFPFTVAEAQSLLRCTVNLDHSIRRRMGLIRAVSALKPPSPPKSPSRDDPQASRSASNAAAAAGTSQVAHGSGHSREAHHPRDRTHGVKPRPMA", "length": 679, "header": "tr|A0A9J7H5P4-1|A0A9J7H5P4_CRIGR Computationally mapped isoform of NTPase KAP family P-loop domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837306 PE=4 SV=1 CANONICAL=A0A9J7GHV1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 134, "start_aa": "Thr", "end_pos": 134, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr134", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 661, "start_aa": "Thr", "end_pos": 661, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr661", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837306", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837306", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV1" }, { "id": "PF07693", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07693" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KAP NTPase", "eco_id": "ECO_0000259", "start_pos": 192, "end_pos": 556, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 134, 209, 661 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 527, "end_pos": 529 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GHW2-1", "uniprot_ac": "A0A9J7GHW2", "uniprot_id": "A0A9J7GHW2_CRIGR", "mass": { "chemical_mass": 30028.0, "monoisotopic_mass": 30028.0 }, "refseq": { "ac": "XP_027286812", "name": "osteoclast-associated immunoglobulin-like receptor isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286812" }, "gene_names": [ { "name": "Oscar", "type": "recommended", "evidence": [ { "id": "A0A9J7GHW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2" } ] }, { "name": "Oscar", "type": "synonym", "evidence": [ { "id": "XP_027286812", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286812" } ] } ], "protein_names": [ { "name": "Osteoclast-associated immunoglobulin-like receptor isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GHW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2/entry#names_and_taxonomy" } ] }, { "name": "osteoclast-associated immunoglobulin-like receptor isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286812", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286812" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286812", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286812" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Oscar", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GHW2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GHW2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837318", "url": "https://www.ncbi.nlm.nih.gov/gene/113837318", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837318", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837318", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GHW2", "url": "https://www.orthodb.org/?gene=A0A9J7GHW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286812", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286812", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3Z0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILWLTIQLLTLCELSLPSVWPACHTDITLTAPPALSPQPWLGAHPAAVVTPGVNVTLRCRAPQPAWRFALFRTGVLTPLRFRDVSAELAEFFLEEVTLAQGGSYYCRYRRTDWEPGVWSQSSNVLELLVTVQLPRPSLVALPGPVVAPGANVSLRCAGRMPGMSFALYRVGVATPLQYIDSVQPWADFPLMGASAPGTYSCYYHTPSAPYVLSQRSQPLVISSEGSGSSDYTQANLIRLGLAGLVLICLGVLVTFDWHSRSSAFGRLLPQQNWV", "length": 275, "header": "tr|A0A9J7GHW2-1|A0A9J7GHW2_CRIGR Isoform 1 of Osteoclast-associated immunoglobulin-like receptor isoform X2 OS=Cricetulus griseus OX=10029 GN=Oscar PE=4 SV=1 CANONICAL=A0A9J7GHW2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHW2/entry#A0A9J7GHW2-1", "sequence": { "sequence": 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027286931.1. 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"Protein" ] } ], "sequence": { "sequence": "MDEELPDGVVFKDDNFSSDLLRQLNDLRQSKTLTDVSICSGAWEVPCHRNVLASSSPYFKAMFCSHFRESTEAKVWLKGINSSTLEQVVTYVYTGEVHITAANVLPLMEAAAMLQYPRVFEACSSYLQSQLAPNNCLGLVRLAEILNCESLKKRAREVALTCFPEVAASADLKELCAMELRDYLGDDRLCGEEEKVFEALMAWVKHDLQARWPYMQELLQQVRLQYIHPAFFHHFIANDAVLQSSPACRAILEAARKQMFSLYSPSAQDCKLVWHEPPRSCYQDCLLVLGGQKDNQQTTRDVLLYSVHTGQWQSLAKLPARLYKASAVTLHRSVYVLGGVAVREGKSAVSASVYVFSLKLNQWRRGEPMLAARYSHRSAAHRNFIFSIGGTGEGQQLLGSMERYDSVCDVWESMADMPVAVLHPAVAVKDQRLYLFGGEDIMQNPVRLVQVYHISRNTWFKMETRMIKNVCAPAVVLGERIVIVGGYTRRILAYDPRANKFVKCADMKDRRMHHGAAVMGSKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLPHTLFDHACLTLQCIRHTAGFT", "length": 581, "header": "tr|A0A9J7GI41-1|A0A9J7GI41_CRIGR Isoform 1 of Kelch-like protein 38 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764038 PE=4 SV=1 CANONICAL=A0A9J7GI41-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GI41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI41/entry#A0A9J7GI41-1", "sequence": { "sequence": "MDEELPDGVVFKDDNFSSDLLRQLNDLRQSKTLTDVSICSGAWEVPCHRNVLASSSPYFKAMFCSHFRESTEAKVWLKGINSSTLEQVVTYVYTGEVHITAANVLPLMEAAAMLQYPRVFEACSSYLQSQLAPNNCLGLVRLAEILNCESLKKRAREVALTCFPEVAASADLKELCAMELRDYLGDDRLCGEEEKVFEALMAWVKHDLQARWPYMQELLQQVRLQYIHPAFFHHFIANDAVLQSSPACRAILEAARKQMFSLYSPSAQDCKLVWHEPPRSCYQDCLLVLGGQKDNQQTTRDVLLYSVHTGQWQSLAKLPARLYKASAVTLHRSVYVLGGVAVREGKSAVSASVYVFSLKLNQWRRGEPMLAARYSHRSAAHRNFIFSIGGTGEGQQLLGSMERYDSVCDVWESMADMPVAVLHPAVAVKDQRLYLFGGEDIMQNPVRLVQVYHISRNTWFKMETRMIKNVCAPAVVLGERIVIVGGYTRRILAYDPRANKFVKCADMKDRRMHHGAAVMGSKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLPHTLFDHACLTLQCIRHTAGFT", "length": 581, "header": "tr|A0A9J7GI41-1|A0A9J7GI41_CRIGR Isoform 1 of Kelch-like protein 38 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764038 PE=4 SV=1 CANONICAL=A0A9J7GI41-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764038", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764038", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GI41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI41" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 101, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GI44-1", "uniprot_ac": "A0A9J7GI44", "uniprot_id": "A0A9J7GI44_CRIGR", "mass": { "chemical_mass": 278997.0, "monoisotopic_mass": 278997.0 }, "refseq": { "ac": "XP_027286285", "name": "IgGFc-binding protein-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286285" }, "gene_names": [ { "name": "LOC100766020", "type": "recommended", "evidence": [ { "id": "A0A9J7GI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ] }, { "name": "LOC100766020", "type": "synonym", "evidence": [ { "id": "XP_027286285", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286285" } ] } ], "protein_names": [ { "name": "IgGFc-binding protein-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286285", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286285" }, { "id": "A0A9J7GI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286285", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286285" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766020", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44", "locus": {} } ], "crossref": [ { "id": "cd19941", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19941", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766020", "url": "https://www.ncbi.nlm.nih.gov/gene/100766020", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766020", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766020", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GI44", "url": "https://www.orthodb.org/?gene=A0A9J7GI44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11339:SF365", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11339:SF365", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286285", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286285", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 2581, "header": "tr|A0A9J7GI44-1|A0A9J7GI44_CRIGR Isoform 1 of IgGFc-binding protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100766020 PE=4 SV=1 CANONICAL=A0A9J7GI44-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44/entry#A0A9J7GI44-1", "sequence": { "sequence": 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"length": 2581, "header": "tr|A0A9J7GI44-1|A0A9J7GI44_CRIGR Isoform 1 of IgGFc-binding protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100766020 PE=4 SV=1 CANONICAL=A0A9J7GI44-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766020", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1077, "end_pos": 1079, "annotation": "n_glycosylation_sequon" }, { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1321, "end_pos": 1323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1410, "end_pos": 1412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1592, "end_pos": 1594, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1760, "end_pos": 1762, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2168, "end_pos": 2170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2244, "end_pos": 2246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2362, "end_pos": 2364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" }, { "start_pos": 900, "end_pos": 902, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI44" }, { "id": "PS51233", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51233" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFD", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 234, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1077, "end_pos": 1079 }, { "start_pos": 121, "end_pos": 123 }, { "start_pos": 1321, "end_pos": 1323 }, { "start_pos": 1410, "end_pos": 1412 }, { "start_pos": 1592, "end_pos": 1594 }, { "start_pos": 1760, "end_pos": 1762 }, { "start_pos": 2168, "end_pos": 2170 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 2244, "end_pos": 2246 }, { "start_pos": 2362, "end_pos": 2364 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 89, "end_pos": 91 }, { "start_pos": 900, "end_pos": 902 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GI45-1", "uniprot_ac": "A0A9J7GI45", "uniprot_id": "A0A9J7GI45_CRIGR", "mass": { "chemical_mass": 96947.0, "monoisotopic_mass": 96947.0 }, "refseq": { "ac": "XP_027286976", "name": "vomeronasal type-2 receptor 26 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286976" }, "gene_names": [ { "name": "LOC103163658", "type": "recommended", "evidence": [ { "id": "A0A9J7GI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI45" } ] }, { "name": "LOC103163658", "type": "synonym", "evidence": [ { "id": "XP_027286976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286976" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 26 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI45/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 26 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286976" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 12% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286976", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286976" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI45" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163658", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI45", "locus": {} } ], "crossref": [ { "id": "A0A9J7GI45", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GI45", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508299" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI62" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752243", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI62", "locus": {} } ], "crossref": [ { "id": "A0A9J7GI62", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GI62", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752243", "url": "https://www.ncbi.nlm.nih.gov/gene/100752243", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752243", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752243", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GECKLFP", "url": "https://omabrowser.org/oma/group/GECKLFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GI62", "url": "https://www.orthodb.org/?gene=A0A9J7GI62", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015:SF454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015:SF454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508299", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GI62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQFCKTVPNFLTKLWVLVDNTVLDHVIRWSKDGQSFQIVNQETFCNEILPKYFKHNKIASFIRQLNMYGFRKTMSLQSENTSDEKKIPMEFQHPLFKKGGACLLENIKRKVPTIKIEDTSLFSDEFQKILTEMQEMREMQSNMDARYEQMKQDYSGLCVEMTNLRKKYCEQQQLLTQVLHFILDLMNENHSILKKRKRSLSVLSGVSDSEWDRQYLHIPDDKKKEAMEIVKDGYELVEDKYKSLLDRVIPIFKESKKLISSVDKPSGDDGKDPNVSVPDIPPNEDSLTIQLDLTIPFLQEQITKESFEQEPKDMSLQLELSPQDSILMEDRSDNLCNNTINRDEIHIHHTEGNLVEPNSLLSKKADNYDLDHFGETLSLMENEGERSLLEASGEKDIHMTQCMEKTQPLLLDGTPICDFGENLQDSNDLFLDTLKDESNVLSALCDHDYINYNISTTQEDTANAIENVVPQLSTESSGESNAFPLLFLNPVPNIF", "length": 496, "header": "tr|A0A9J7GI62-1|A0A9J7GI62_CRIGR Isoform 1 of Heat shock factor protein 3 OS=Cricetulus griseus OX=10029 GN=LOC100752243 PE=3 SV=1 CANONICAL=A0A9J7GI62-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GI62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI62/entry#A0A9J7GI62-1", "sequence": { "sequence": "MEQFCKTVPNFLTKLWVLVDNTVLDHVIRWSKDGQSFQIVNQETFCNEILPKYFKHNKIASFIRQLNMYGFRKTMSLQSENTSDEKKIPMEFQHPLFKKGGACLLENIKRKVPTIKIEDTSLFSDEFQKILTEMQEMREMQSNMDARYEQMKQDYSGLCVEMTNLRKKYCEQQQLLTQVLHFILDLMNENHSILKKRKRSLSVLSGVSDSEWDRQYLHIPDDKKKEAMEIVKDGYELVEDKYKSLLDRVIPIFKESKKLISSVDKPSGDDGKDPNVSVPDIPPNEDSLTIQLDLTIPFLQEQITKESFEQEPKDMSLQLELSPQDSILMEDRSDNLCNNTINRDEIHIHHTEGNLVEPNSLLSKKADNYDLDHFGETLSLMENEGERSLLEASGEKDIHMTQCMEKTQPLLLDGTPICDFGENLQDSNDLFLDTLKDESNVLSALCDHDYINYNISTTQEDTANAIENVVPQLSTESSGESNAFPLLFLNPVPNIF", "length": 496, "header": "tr|A0A9J7GI62-1|A0A9J7GI62_CRIGR Isoform 1 of Heat shock factor protein 3 OS=Cricetulus griseus OX=10029 GN=LOC100752243 PE=3 SV=1 CANONICAL=A0A9J7GI62-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287775", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287775" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GII1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103159765", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GII1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GII1", "database": "AlphaFoldDB", "categories": [] }, { "id": "103159765", "url": "https://www.ncbi.nlm.nih.gov/gene/103159765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:103159765", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027287775", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287775", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GI89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GII1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GII1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFIDQHLAAKAPLSRESRLCGKRDGSCSMAAAASELRVRVNRVRKASTMISGCVYILEFQGPWLPAFSAEAVGECCPLVLSSVENVFQHVFPVSVERRITGGPRWPRTSRSRPRRHAAQEPDMRKRQHRKKEHSLSTARLLTRSWEWTSTLAVS", "length": 154, "header": "tr|A0A9J7GII1-1|A0A9J7GII1_CRIGR Isoform 1 of Uncharacterized protein LOC103159765 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103159765 PE=4 SV=1 CANONICAL=A0A9J7GII1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GI89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1/entry#A0A9J7GI89-1", "sequence": { "sequence": "MAAMASKLRARVNRVRKASTMISGCVYILEFQGPWLPAFSAEAVGECCPLVLSSVENVFQHVFPVSVERRITGGPRWPRTSRSRPRRHAAQEPDMRKRQHRKKEHSLSTARLLTRSWEWTSTLAVS", "length": 126, "header": "tr|A0A9J7GI89-1|A0A9J7GII1_CRIGR Computationally mapped isoform of Uncharacterized protein LOC103159765 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103159765 PE=4 SV=1 CANONICAL=A0A9J7GII1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GII1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1/entry#A0A9J7GII1-1", "sequence": { "sequence": "MFIDQHLAAKAPLSRESRLCGKRDGSCSMAAAASELRVRVNRVRKASTMISGCVYILEFQGPWLPAFSAEAVGECCPLVLSSVENVFQHVFPVSVERRITGGPRWPRTSRSRPRRHAAQEPDMRKRQHRKKEHSLSTARLLTRSWEWTSTLAVS", "length": 154, "header": "tr|A0A9J7GII1-1|A0A9J7GII1_CRIGR Isoform 1 of Uncharacterized protein LOC103159765 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103159765 PE=4 SV=1 CANONICAL=A0A9J7GII1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GN43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII1/entry#A0A9J7GN43-1", "sequence": { "sequence": "MAAAASELRIRVNRVRKASTMISGCVYILEFQGPWLPAFSAEAVGECCPLVLSSVENVFQHVFPVSVERRITGGPRWPRTSRSRPRRHAAQEPDMRKRQHRKKEHSLSTARLLTRSWEWTSTLAVS", "length": 126, "header": "tr|A0A9J7GN43-1|A0A9J7GN43_CRIGR Computationally mapped isoform of Uncharacterized protein LOC103159765 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103159765 PE=4 SV=1 CANONICAL=A0A9J7GII1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI89" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GI89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI89" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103159765", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159765", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIG1-1", "uniprot_ac": "A0A9J7GIG1", "uniprot_id": "A0A9J7GIG1_CRIGR", "mass": { "chemical_mass": 21103.0, "monoisotopic_mass": 21103.0 }, "refseq": { "ac": "XP_003511181", "name": "transcription factor LBX2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511181" }, "gene_names": [ { "name": "Lbx2", "type": "recommended", "evidence": [ { "id": "A0A9J7GIG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ] }, { "name": "Lbx2", "type": "synonym", "evidence": [ { "id": "XP_003511181", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511181" } ] } ], "protein_names": [ { "name": "Transcription factor LBX2", "type": "synonym", "evidence": [ { "id": "A0A9J7GIG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1/entry#names_and_taxonomy" } ] }, { "name": "transcription factor LBX2", "type": "synonym", "evidence": [ { "id": "XP_003511181", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511181" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615037.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003511181.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511181", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511181" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lbx2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761783", "url": "https://www.ncbi.nlm.nih.gov/gene/100761783", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761783", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761783", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVQCRLS", "url": "https://omabrowser.org/oma/group/EVQCRLS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GIG1", "url": "https://www.orthodb.org/?gene=A0A9J7GIG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24336:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24336:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511181", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511181", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSGRQRRTPFSISDILGPSMVPRAPSAPQLPEASPDPASPLCALEELTSKTFLGRDPRSLQLSEGRIAPEAPPGPGAGVRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLCALSPGVLCHLALPDSASRPDSGPTGPDSEPHLSDEEIQVDD", "length": 194, "header": "tr|A0A9J7GIG1-1|A0A9J7GIG1_CRIGR Isoform 1 of Transcription factor LBX2 OS=Cricetulus griseus OX=10029 GN=Lbx2 PE=4 SV=1 CANONICAL=A0A9J7GIG1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1/entry#A0A9J7GIG1-1", "sequence": { "sequence": "MNSGRQRRTPFSISDILGPSMVPRAPSAPQLPEASPDPASPLCALEELTSKTFLGRDPRSLQLSEGRIAPEAPPGPGAGVRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLCALSPGVLCHLALPDSASRPDSGPTGPDSEPHLSDEEIQVDD", "length": 194, "header": "tr|A0A9J7GIG1-1|A0A9J7GIG1_CRIGR Isoform 1 of Transcription factor LBX2 OS=Cricetulus griseus OX=10029 GN=Lbx2 PE=4 SV=1 CANONICAL=A0A9J7GIG1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 177, "start_aa": "Thr", "end_pos": 177, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761783", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761783", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A7L0-1", "protein_name": "Ladybird homeobox 2", "gene_name": "Lbx2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNSGRQRRTPFSIADILGRSMVPGAPSEPRLPEAGPDPASPLCALEELASKTFQGHSPRAPQPSEGRAVPEAPPGPGTGVRRRRKSRTAFTPQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADLASLCGLSPGVLCPPALPDSASSPDLQPTPSGPDSEPGLSDEEIQVDD", "length": 196 }, "evidence": [ { "id": "A0A9J7GIG1", "url": "https://omabrowser.org/oma/group/A0A9J7GIG1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B707-1", "protein_name": "Ladybird homeobox 2", "gene_name": "LBX2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSGSEPRTSLTSFSIADILGSCMIPRRPSVSRPPESNQGPTSPLCALEELTSKTFRGLDGHTPQPSEGRAAPGALGSGQAGRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLASRLGLANAQVVTWFQNRRAKLKRDVEEMRADLASLRSLSPEAQCRLALPDGAPGLGPGPARPDSELHLSDEEIQVDD", "length": 196 }, "evidence": [ { "id": "A0A9J7GIG1", "url": "https://omabrowser.org/oma/group/A0A9J7GIG1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SNT2-1", "protein_name": "Ladybird homeobox 2", "gene_name": "LBX2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSGSEPGTPRTPFSIADILGSRLVPRGPSASQLPESSPGPRSPLCALEELTSKTFRGLDGHAPQPSEGRAAPGALGPGPAGRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEIQCRLALPEGAPGLGPGLARPDAGPHLSDEEIQVDD", "length": 196 }, "evidence": [ { "id": "A0A9J7GIG1", "url": "https://omabrowser.org/oma/group/A0A9J7GIG1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6XYB7-1", "protein_name": "Transcription factor LBX2", "gene_name": "LBX2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD", "length": 198 }, "evidence": [ { "id": "A0A9J7GIG1", "url": "https://omabrowser.org/oma/group/A0A9J7GIG1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WUN8-1", "protein_name": "Transcription factor LBX2", "gene_name": "Lbx2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSVHQRRTPFSIADILGPSMVPEAPSAPQLPEAGPDPASPLCALEELASKTFLGHSPRATPQPSEGRAAPEAPPGPGAGVRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLCGLSPGVLCYPALPDSTSSPDPGPSGPDSEPNLSDEEIQVDD", "length": 195 }, "evidence": [ { "id": "A0A9J7GIG1", "url": "https://omabrowser.org/oma/group/A0A9J7GIG1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GIG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIG1" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 81, "end_pos": 141, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 177 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIH3-1", "uniprot_ac": "A0A9J7GIH3", "uniprot_id": "A0A9J7GIH3_CRIGR", "mass": { "chemical_mass": 111590.0, "monoisotopic_mass": 111590.0 }, "refseq": { "ac": "XP_027286599", "name": "NACHT, LRR and PYD domains-containing protein 4C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286599" }, "gene_names": [ { "name": "LOC100773371", "type": "recommended", "evidence": [ { "id": "A0A9J7GIH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3" } ] }, { "name": "LOC100773371", "type": "synonym", "evidence": [ { "id": "XP_027286599", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286599" } ] } ], "protein_names": [ { "name": "NACHT, LRR and PYD domains-containing protein 4C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286599", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286599" }, { "id": "A0A9J7GIH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286599" } ] }, { "annotation": "May be involved in inflammation and recognition of cytosolic pathogen-associated molecular patterns (PAMPs) not intercepted by membrane-bound receptors.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3#function" }, { "database": "UniProtKB", "id": "ARBA00059788", "url": "https://www.uniprot.org/uniprotkb/ARBA00059788#function" }, { "database": "UniProtKB", "id": "A0A9J7JXZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXZ6#function" }, { "database": "UniProtKB", "id": "A0A9J7KBL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBL6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773371", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIH3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIH3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08320", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08320", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773371", "url": "https://www.ncbi.nlm.nih.gov/gene/100773371", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773371", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773371", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GIH3", "url": "https://www.orthodb.org/?gene=A0A9J7GIH3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286599", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFFSDFGLMWYLEELNKKEFMKFKEVLRKEMAESGLQHIPWTEVKKASREDLANLLVKHYEKKAWDVTFRIFQNINRKDLSERAAGEMAGHSKIYQAHLKKVLSQDCSRKFNIPIQHFLKEEFTPDKCSRLQQLFVPKTTEKKPHTVLLKGVSGVGKTVLLAELMMAWSEGLMFQNEFSYVFYLCCHEIKQLKTASLADLLSREWPRPSAPIAEIVSQPAKLLFIIDSLEGLNCDWSEPESELCDNWMQKCPVSILLSSLLRRKLLPESSLLITATPEAFENLEDRIEYTDMKMMTGLDESSRRAFFQGLFQDKNTSQEVFRLVRANEQLFSICHVPSLCLVVATCVKNEIGKGGDLSAVCRCTTSVFAAYVLNLFIPKSAHYPSKKSQALLRGLCSVAAEGMWTDNFAFNQEDLEKNGVFHSDISTLLNMKILLKSRDSKNLYTFLHPSIQEFCAALFYLVNSHVDHPSKDVLCVETLLFTFLKKVRVQWIFLGCFIFGLLHKSEQAKLEAFFGYQLSQEVKQTLCQSLEKISADEELRKQIDDMKLFYCLFELEDDGFVTQVMTFLPQIKFVAKEYSDLIVAAYCLKNCSTLQKLSISTQDILQEEKDPSYLKKLLLCWQDLCSVLGSSQQIQVLQVKDTYLNELAFLELHNHLRNPSCAPRKFLVNNVSFLCNNQLFFELLTQNHNLHHLDLSLTSLSRSDVKLLCEVLNQKGCHIEELLLSGCQLSPDDCKIFASTLISSKTLRHLNVSCNNLDKGMYLLSKALCHPDCVLKDLVLASCSLSKQCWNYLSDVLKRNKTLSHLDISSNDLQDEGLKVLCQALSLPDSALKSLFLRRCLITSSGCQYLAEVLSSNQNLISLQVSNNKLEDAGVKLLCEAIKEPNCRLENLGLEACELTGACCEDLVSALSQNETLWAINLLKNALDRRGLAVLCEALKLRRCTPNVLGLQITDFDKETQELLIAEKEKNPYLTILSSV", "length": 982, "header": "tr|A0A9J7GIH3-1|A0A9J7GIH3_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 4C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773371 PE=3 SV=1 CANONICAL=A0A9J7GIH3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3/entry#A0A9J7GIH3-1", "sequence": { "sequence": "MASFFSDFGLMWYLEELNKKEFMKFKEVLRKEMAESGLQHIPWTEVKKASREDLANLLVKHYEKKAWDVTFRIFQNINRKDLSERAAGEMAGHSKIYQAHLKKVLSQDCSRKFNIPIQHFLKEEFTPDKCSRLQQLFVPKTTEKKPHTVLLKGVSGVGKTVLLAELMMAWSEGLMFQNEFSYVFYLCCHEIKQLKTASLADLLSREWPRPSAPIAEIVSQPAKLLFIIDSLEGLNCDWSEPESELCDNWMQKCPVSILLSSLLRRKLLPESSLLITATPEAFENLEDRIEYTDMKMMTGLDESSRRAFFQGLFQDKNTSQEVFRLVRANEQLFSICHVPSLCLVVATCVKNEIGKGGDLSAVCRCTTSVFAAYVLNLFIPKSAHYPSKKSQALLRGLCSVAAEGMWTDNFAFNQEDLEKNGVFHSDISTLLNMKILLKSRDSKNLYTFLHPSIQEFCAALFYLVNSHVDHPSKDVLCVETLLFTFLKKVRVQWIFLGCFIFGLLHKSEQAKLEAFFGYQLSQEVKQTLCQSLEKISADEELRKQIDDMKLFYCLFELEDDGFVTQVMTFLPQIKFVAKEYSDLIVAAYCLKNCSTLQKLSISTQDILQEEKDPSYLKKLLLCWQDLCSVLGSSQQIQVLQVKDTYLNELAFLELHNHLRNPSCAPRKFLVNNVSFLCNNQLFFELLTQNHNLHHLDLSLTSLSRSDVKLLCEVLNQKGCHIEELLLSGCQLSPDDCKIFASTLISSKTLRHLNVSCNNLDKGMYLLSKALCHPDCVLKDLVLASCSLSKQCWNYLSDVLKRNKTLSHLDISSNDLQDEGLKVLCQALSLPDSALKSLFLRRCLITSSGCQYLAEVLSSNQNLISLQVSNNKLEDAGVKLLCEAIKEPNCRLENLGLEACELTGACCEDLVSALSQNETLWAINLLKNALDRRGLAVLCEALKLRRCTPNVLGLQITDFDKETQELLIAEKEKNPYLTILSSV", "length": 982, "header": "tr|A0A9J7GIH3-1|A0A9J7GIH3_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 4C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773371 PE=3 SV=1 CANONICAL=A0A9J7GIH3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3/entry#A0A9J7JXZ6-1", "sequence": { "sequence": "MASFFSDFGLMWYLEELNKKEFMKFKEVLRKEMAESGLQHIPWTEVKKASREDLANLLVKHYEKKAWDVTFRIFQNINRKDLSERAAGEMAGVCESAPLPLTDSGHSKIYQAHLKKVLSQDCSRKFNIPIQHFLKEEFTPDKCSRLQQLFVPKTTEKKPHTVLLKGVSGVGKTVLLAELMMAWSEGLMFQNEFSYVFYLCCHEIKQLKTASLADLLSREWPRPSAPIAEIVSQPAKLLFIIDSLEGLNCDWSEPESELCDNWMQKCPVSILLSSLLRRKLLPESSLLITATPEAFENLEDRIEYTDMKMMTGLDESSRRAFFQGLFQDKNTSQEVFRLVRANEQLFSICHVPSLCLVVATCVKNEIGKGGDLSAVCRCTTSVFAAYVLNLFIPKSAHYPSKKSQALLRGLCSVAAEGMWTDNFAFNQEDLEKNGVFHSDISTLLNMKILLKSRDSKNLYTFLHPSIQEFCAALFYLVNSHVDHPSKDVLCVETLLFTFLKKVRVQWIFLGCFIFGLLHKSEQAKLEAFFGYQLSQEVKQTLCQSLEKISADEELRKQIDDMKLFYCLFELEDDGFVTQVMTFLPQIKFVAKEYSDLIVAAYCLKNCSTLQKLSISTQDILQEEKDPSYLKKLLLCWQDLCSVLGSSQQIQVLQVKDTYLNELAFLELHNHLRNPSCAPRKFLVNNVSFLCNNQLFFELLTQNHNLHHLDLSLTSLSRSDVKLLCEVLNQKGCHIEELL", "length": 738, "header": "tr|A0A9J7JXZ6-1|A0A9J7JXZ6_CRIGR Computationally mapped isoform of NACHT, LRR and PYD domains-containing protein 4E isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100773371 PE=3 SV=1 CANONICAL=A0A9J7GIH3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3/entry#A0A9J7KBL6-1", "sequence": { "sequence": "MASFFSDFGLMWYLEELNKKEFMKFKEVLRKEMAESGLQHIPWTEVKKASREDLANLLVKHYEKKAWDVTFRIFQNINRKDLSERAAGEMAGHSKIYQAHLKKVLSQDCSRKFNIPIQHFLKEEFTPDKCSRLQQLFVPKTTEKKPHTVLLKGVSGVGKTVLLAELMMAWSEGLMFQNEFSYVFYLCCHEIKQLKTASLADLLSREWPRPSAPIAEIVSQPAKLLFIIDSLEGLNCDWSEPESELCDNWMQKCPVSILLSSLLRRKLLPESSLLITATPEAFENLEDRIEYTDMKMMTGLDESSRRAFFQGLFQDKNTSQEVFRLVRANEQLFSICHVPSLCLVVATCVKNEIGKGGDLSAVCRCTTSVFAAYVLNLFIPKSAHYPSKKSQALLRGLCSVAAEGMWTDNFAFNQEDLEKNGVFHSDISTLLNMKILLKSRDSKNLYTFLHPSIQEFCAALFYLVNSHVDHPSKDVLCVETLLFTFLKKVRVQWIFLGCFIFGLLHKSEQAKLEAFFGYQLSQEVKQTLCQSLEKISADEELRKQIDDMKLFYCLFELEDDGFVTQVMTFLPQIKFVAKEYSDLIVAAYCLKNCSTLQKLSISTQDILQEELHYRKKLLLCWQDLCSVLGSSQQIQVLQVKDTYLNELAFLELHNHLRNPSCAPRKFLVNNVSFLCNNQLFFELLTQNHNLHHLDLSLTSLSRSDVKLLCEVLNQKGCHIEELLLASCSLSKQCWNYLSDVLKRNKTLSHLDISSNDLQDEGLKVLCQALSLPDSALKSLLLEACELTGACCEDLVSALSQNETLWAINLLKNALDRRGLAVLCEALKLRRCTPNVLGLQITDFDKETQELLIAEKEKNPYLTILSSV", "length": 867, "header": "tr|A0A9J7KBL6-1|A0A9J7KBL6_CRIGR Computationally mapped isoform of NACHT, LRR and PYD domains-containing protein 4E isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100773371 PE=3 SV=1 CANONICAL=A0A9J7GIH3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773371", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773371", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { 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} ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pyrin", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 92, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 592, "end_pos": 594 }, { "start_pos": 672, "end_pos": 674 }, { "start_pos": 753, "end_pos": 755 }, { "start_pos": 802, "end_pos": 804 }, { "start_pos": 916, "end_pos": 918 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286620" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GII3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837276", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GII3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GII3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837276", "url": "https://www.ncbi.nlm.nih.gov/gene/113837276", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837276", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837276", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GII3", "url": "https://www.orthodb.org/?gene=A0A9J7GII3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GII3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GII3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAAAPQPVKQESLSVEALTLDSPWHRFRHFHLGDAAGPREALGLLRALCRDWLQPDVHTKEQMLELLVLEQFLSALPADTQAWVCSRRPQSGEEAVALLEELWGPAASPDRSSAMRAPRDMTEGSGVTVGKEESGAIPVGTGASGTEAPAAGTAGTAARPYKQEPGSPPPLPAPLVPVLPAFLAAPGTVTVSCPECGKSPLKPAHLLRHRQSHSAEKPHACPECGKAFRRKEHLRRHRGTHPGSPGPALRPLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIHGRAAAAQGTAAPGPERGGGGGGGGAFPPWALG", "length": 342, "header": "tr|A0A9J7GII3-1|A0A9J7GII3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 444-like OS=Cricetulus griseus OX=10029 GN=LOC113837276 PE=4 SV=1 CANONICAL=A0A9J7GII3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GII3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3/entry#A0A9J7GII3-1", "sequence": { "sequence": "MEAAAPQPVKQESLSVEALTLDSPWHRFRHFHLGDAAGPREALGLLRALCRDWLQPDVHTKEQMLELLVLEQFLSALPADTQAWVCSRRPQSGEEAVALLEELWGPAASPDRSSAMRAPRDMTEGSGVTVGKEESGAIPVGTGASGTEAPAAGTAGTAARPYKQEPGSPPPLPAPLVPVLPAFLAAPGTVTVSCPECGKSPLKPAHLLRHRQSHSAEKPHACPECGKAFRRKEHLRRHRGTHPGSPGPALRPLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIHGRAAAAQGTAAPGPERGGGGGGGGAFPPWALG", "length": 342, "header": "tr|A0A9J7GII3-1|A0A9J7GII3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 444-like OS=Cricetulus griseus OX=10029 GN=LOC113837276 PE=4 SV=1 CANONICAL=A0A9J7GII3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GII3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GII3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750471", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750471", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GIM2", "url": "https://www.orthodb.org/?gene=A0A9J7GIM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF420", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF420", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13964", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13964", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283957", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283957", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAVAAGGAAAAAAASLQVLEMESMETAAAGSAGLAAEVRGSGTVDFGPGPGISAMEASGGDPGPEAEDFECRTHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFYKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAENLQSGTLQHPASHVSLLPRYGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVYVAGSMEPGFAKTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDKWHNLESAPKILRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWKDVESLPLIDNYCFFQMSVVNSNFYQTASCCPKSYSLENEEAVRKIAGQVSDEILESLPPEVLSIEGAAICYYKDDVFIIGGWKNSDDIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQEIHRHALNMRRVPSSQIEC", "length": 708, "header": "tr|A0A9J7GIM2-1|A0A9J7GIM2_CRIGR Isoform 1 of Kelch-like protein 11 OS=Cricetulus griseus OX=10029 GN=Klhl11 PE=4 SV=1 CANONICAL=A0A9J7GIM2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2/entry#A0A9J7GIM2-1", "sequence": { "sequence": "MAAAVAAGGAAAAAAASLQVLEMESMETAAAGSAGLAAEVRGSGTVDFGPGPGISAMEASGGDPGPEAEDFECRTHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFYKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAENLQSGTLQHPASHVSLLPRYGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVYVAGSMEPGFAKTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDKWHNLESAPKILRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWKDVESLPLIDNYCFFQMSVVNSNFYQTASCCPKSYSLENEEAVRKIAGQVSDEILESLPPEVLSIEGAAICYYKDDVFIIGGWKNSDDIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQEIHRHALNMRRVPSSQIEC", "length": 708, "header": "tr|A0A9J7GIM2-1|A0A9J7GIM2_CRIGR Isoform 1 of Kelch-like protein 11 OS=Cricetulus griseus OX=10029 GN=Klhl11 PE=4 SV=1 CANONICAL=A0A9J7GIM2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750471", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750471", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GIM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM2" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 170, "start_aa": "Cys", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 463, "end_pos": 465 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIQ0-1", "uniprot_ac": "A0A9J7GIQ0", "uniprot_id": "A0A9J7GIQ0_CRIGR", "mass": { "chemical_mass": 71238.0, "monoisotopic_mass": 71238.0 }, "refseq": { "ac": "XP_027286758", "name": "dystrophia myotonica WD repeat-containing protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286758" }, "gene_names": [ { "name": "LOC113837297", "type": "recommended", "evidence": [ { "id": "A0A9J7GIQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0" } ] }, { "name": "LOC113837297", "type": "synonym", "evidence": [ { "id": "XP_027286758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286758" } ] } ], "protein_names": [ { "name": "Dystrophia myotonica WD repeat-containing protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7GIQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0/entry#names_and_taxonomy" } ] }, { "name": "dystrophia myotonica WD repeat-containing protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027286758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286758" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286758" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837297", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIQ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837297", "url": "https://www.ncbi.nlm.nih.gov/gene/113837297", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837297", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837297", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GIQ0", "url": "https://www.orthodb.org/?gene=A0A9J7GIQ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14107:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14107:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1R6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGGAEGVAGPGGAMGECAEIKSQFRTREGFYKLLPGDAARRPGPASAQTPAPPQPPQPQPQQQQPQPPQPPPGPASSPPPAGPGPGPGPGPGPGPALPAVRLSLVRLGEPDGDGEPPSTPSGLGSGRDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVGHPCVCTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEETTPATGDGDPRGEEEEPEATSSDTGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLAPHPSLARTRTLPGTPGATPPASGSSRAGEAGTGPLPRSLSRSNSLPHPAGGGKAAGPGAAMEPGPPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGSSNNDKLGGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEENEAQTGEASWPRSPSKSVVEGISSQPGNSPSGTVV", "length": 674, "header": "tr|A0A9J7GIQ0-1|A0A9J7GIQ0_CRIGR Isoform 1 of Dystrophia myotonica WD repeat-containing protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837297 PE=4 SV=1 CANONICAL=A0A9J7GIQ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0/entry#A0A9J7GIQ0-1", "sequence": { "sequence": "MAAGGAEGVAGPGGAMGECAEIKSQFRTREGFYKLLPGDAARRPGPASAQTPAPPQPPQPQPQQQQPQPPQPPPGPASSPPPAGPGPGPGPGPGPGPALPAVRLSLVRLGEPDGDGEPPSTPSGLGSGRDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVGHPCVCTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEETTPATGDGDPRGEEEEPEATSSDTGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLAPHPSLARTRTLPGTPGATPPASGSSRAGEAGTGPLPRSLSRSNSLPHPAGGGKAAGPGAAMEPGPPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGSSNNDKLGGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEENEAQTGEASWPRSPSKSVVEGISSQPGNSPSGTVV", "length": 674, "header": "tr|A0A9J7GIQ0-1|A0A9J7GIQ0_CRIGR Isoform 1 of Dystrophia myotonica WD repeat-containing protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837297 PE=4 SV=1 CANONICAL=A0A9J7GIQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0/entry#A0A9J7JY31-1", "sequence": { "sequence": "MAAGGAEGVAGPGGAMGECAEIKSQFRTREGFYKLLPGDAARRPGPASAQTPAPPQPPQPQPQQQQPQPPQPPPGPASSPPPAGPGPGPGPGPGPGPALPAVRLSLVRLGEPDGDGEPPSTPSGLGSGRDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVGHPCVCTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEETTPATGDGDPRGEEEEPEATSSDTGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLAPHPSLARTRTLPGTPGATPPASGSSRAGEAGTGPLPRSLSRSNSLPHPAGGGKAAGPGAAMEPGPPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGSSNNDKLGGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAGISSQPGNSPSGTVV", "length": 649, "header": "tr|A0A9J7JY31-1|A0A9J7JY31_CRIGR Computationally mapped isoform of Dystrophia myotonica WD repeat-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113837297 PE=4 SV=1 CANONICAL=A0A9J7GIQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0/entry#A0A9J7K1R6-1", "sequence": { "sequence": "MAAGGAEGVAGPGGAMGECAEIKSQFRTREGFYKLLPGDAARRPGPASAQTPAPPQPPQPQPQQQQPQPPQPPPGPASSPPPAGPGPGPGPGPGPGPALPAVRLSLVRLGEPDGDGEPPSTPSGLGSGRDRVCFNLGRELYFYPGCCRRGSQRRLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVGHPCVCTPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEETTPATGDGDPRGEEEEPEATSSDTGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLAPHPSLARTRTLPGTPGATPPASGSSRAGEAGTGPLPRSLSRSNSLPHPAGGGKAAGPGAAMEPGPPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGSSNNDKLGGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEENEAQTGEASWPRSPSKSVVEGISSQPGNSPSGTVV", "length": 613, "header": "tr|A0A9J7K1R6-1|A0A9J7K1R6_CRIGR Computationally mapped isoform of Dystrophia myotonica WD repeat-containing protein isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC113837297 PE=4 SV=1 CANONICAL=A0A9J7GIQ0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 121, "start_aa": "Thr", "end_pos": 121, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 470, "start_aa": "Thr", "end_pos": 470, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr470", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837297", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837297", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 121, 470 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 549, "end_pos": 551 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GIQ5-1", "uniprot_ac": "A0A9J7GIQ5", "uniprot_id": "A0A9J7GIQ5_CRIGR", "mass": { "chemical_mass": 96196.0, "monoisotopic_mass": 96196.0 }, "refseq": { "ac": "XP_027286795", "name": "vomeronasal type-2 receptor 116-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286795" }, "gene_names": [ { "name": "LOC113837316", "type": "recommended", "evidence": [ { "id": "A0A9J7GIQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5" } ] }, { "name": "LOC113837316", "type": "synonym", "evidence": [ { "id": "XP_027286795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286795" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "A0A9J7GIQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "XP_027286795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286795" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286795" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837316", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GIQ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GIQ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837316", "url": "https://www.ncbi.nlm.nih.gov/gene/113837316", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837316", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837316", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GIQ5", "url": "https://www.orthodb.org/?gene=A0A9J7GIQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF457", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF457", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286795", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFSWIFISCFPQIPIPVWSYGSSECLVRMQYRLKGKGNVVIVGFFPAYTAYPLNKTTDWRMAKFTRDFMVEFKLRNYQCILAMMFAIEEINNSPYLLPNTSLGFEVYNVPHGQRHTLANVFVSFSGTGYGISNCRCARDSLPAAVLTGPSWALSEHIGTLLGLYKFPQLTFGPFDSTLSERRRFSSLYQVAPKDTSLTVGIGSLMVHFHWNWVGLFIMDDDKGAQILSDLRSELEKIGVCIAFVEMTLVSRGSFLTTSWKNQVQILESSANVIIIYGDTDSLLSLIVNLKQKLLMWKVWVLNSQWDASKFDNYLLLDALHGALIFSHQNEEIVNFTDFIKTANPSKYPEDIYLHVLWHSFFNCSFLREDCKIVDNCLPNASLEFLPGNIFDMAMSEESYNVYSAVYVVAHSLHEMTLRQVQLQTPGKGKDMVFFPWQLHPFLKNTQLISHDGDKEVLDWKRKSHAEYDILNFWNFPKGLGLKVKVGTFSPNAPGGQKLSLSSHMIQWSTGLTETPQSVCSESCLPGFRKTHREGEAACCFDCTPCPENEISNETDADQCVKCPETHYANTENSHCQHKTVTFLAYDDPLGKTLGFISLGFTSLTVAVLWVFLKHRDTPIVKANNRTLSYTLLTTLTLCFLCPLLFIGRPSTVTCILQQNTFGLLFTVALSTVLAKTLTVLIAFRVTTPGRMRRWLLTSRAPNFIVPICTLLQVVLSGVWLATSPPFIDKDAHSEHGHIIIICNKGSAVAFYCILGYLGSLALGSYLMAFLSRNLPDTFNEAKFLAFSMLVFCSVWVSFLPVYHSTKGKVMVAMEVLSILASSASLLVIIFAPKCYVILLRPERNSLPHIRDKT", "length": 854, "header": "tr|A0A9J7GIQ5-1|A0A9J7GIQ5_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC113837316 PE=3 SV=1 CANONICAL=A0A9J7GIQ5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIQ5/entry#A0A9J7GIQ5-1", "sequence": { "sequence": 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predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284033", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284033" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atn1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3", "locus": {} } ], "crossref": [ { "id": "100767627", "url": "https://www.ncbi.nlm.nih.gov/gene/100767627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002951", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002951", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MKTRQNKDSMSMRSGRKKEAPGPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKKARVEETSTPKASKQGRSEEVSESESEETSAPKKTKTEQELPRPQSPSDLDSLDGRSINDDGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYYPPPLFPPSPTPPDSTPRQPEPGFEPHPSVTPTGYHAPMEPPASRLFQGPPPGAPPPHPQLYPGNAGGGVLTGPPMGPKGGAAASSVGAPSGGKQHPPPTTPIPISSSGASGVPPTKTPNAPVGGGNLPSAPPPATFPHVTPNLPPPPALRPLNNASASPPGVGAQPIPGHLPSPHAMGQGMSGLPPGPEKGPTLVPSPHPLPPASSSSAPGPPMRYPYSSSSGSAAASSSSSSSASQYPASQALPGYPHSFPPPTSMSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANNNTHPGPYPPTGGQSTGHPPAPTHHHHQQQQQQQQQQQQHHHGNSGPPPPGAYPHPLESGSSHHAHPYNMSPSLGSLRPYPPGPAHLPPPHGQVSYSQAGPNGPPVSSSSNSSSGSSSQASYSCSHPSSSQGPQGANYPFPPVPPVTTSSATLSTVIATVASSPAGYKTASPPGPPQYSKRAPSPGSYKTTTPPGYKPGSPPSFRTGTPPGFRGASPPAGPGTFKPGSPTVGPGALPPAGPSTLPSLPPPPAAPAPGPPLTATQIKQEPAEDYETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSELEPLHGVPGPGLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQQDAIHAASASVHPLIDPLASGSHLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAPYRDLPASLSAPMSAAHQLQAMHAQSAELQRLALEQQQWLHAHHPLHSVPLPAQEDYYSHLKKESDKPL", 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"length": 1182, "header": "tr|A0A9J7GIR3-1|A0A9J7GIR3_CRIGR Isoform 1 of Atrophin-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Atn1 PE=4 SV=1 CANONICAL=A0A9J7GIR3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3/entry#A0A9J7JZS6-1", "sequence": { "sequence": "MKTRQNKDSMSMRSGRKKEAPGPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKKARVEETSTPKASKQGRSEEVSESESEETSAPKKTKTEELPRPQSPSDLDSLDGRSINDDGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYYPPPLFPPSPTPPDSTPRQPEPGFEPHPSVTPTGYHAPMEPPASRLFQGPPPGAPPPHPQLYPGNAGGGVLTGPPMGPKGGAAASSVGAPSGGKQHPPPTTPIPISSSGASGVPPTKTPNAPVGGGNLPSAPPPATFPHVTPNLPPPPALRPLNNASASPPGVGAQPIPGHLPSPHAMGQGMSGLPPGPEKGPTLVPSPHPLPPASSSSAPGPPMRYPYSSSSGSAAASSSSSSSASQYPASQALPGYPHSFPPPTSMSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANNNTHPGPYPPTGGQSTGHPPAPTHHHHQQQQQQQQQQQQHHHGNSGPPPPGAYPHPLESGSSHHAHPYNMSPSLGSLRPYPPGPAHLPPPHGQVSYSQAGPNGPPVSSSSNSSSGSSSQASYSCSHPSSSQGPQGANYPFPPVPPVTTSSATLSTVIATVASSPAGYKTASPPGPPQYSKRAPSPGSYKTTTPPGYKPGSPPSFRTGTPPGFRGASPPAGPGTFKPGSPTVGPGALPPAGPSTLPSLPPPPAAPAPGPPLTATQIKQEPAEDYETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSELEPLHGVPGPGLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQQDAIHAASASVHPLIDPLASGSHLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAPYRDLPASLSAPMSAAHQLQAMHAQSAELQRLALEQQQWLHAHHPLHSVPLPAQEDYYSHLKKESDKPL", "length": 1181, "header": "tr|A0A9J7JZS6-1|A0A9J7JZS6_CRIGR Computationally mapped isoform of Atrophin-1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Atn1 PE=4 SV=1 CANONICAL=A0A9J7GIR3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 170, "start_aa": "Thr", "end_pos": 170, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767627", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GIR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1038, "end_pos": 1040, "annotation": "n_glycosylation_sequon" }, { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 454, "end_pos": 456, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 564, 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288414" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756362", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJ03", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJ03", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756362", "url": "https://www.ncbi.nlm.nih.gov/gene/100756362", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756362", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756362", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJ03", "url": "https://www.orthodb.org/?gene=A0A9J7GJ03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF164", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF164", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288414", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRGKKSKARAREKRRQIHDEAHGQNDAQAKAAEKEESPACSDQGSGDGKPSNSAGFPEGKAPTITPSKGMHCRSGKGAKGKEEKQGRSLRAPKSTESMQMDLISRKAGMLVEYMLCKYKIKQPARRGEMLKIINKRFKEHFPEILKKASYRLDMVFGLELKEIQPNGQSYMLVSKLDFEDDGSRSNEMGLPNRGILIPLLSVIYLNGYCAPEEEVWHFLNMLGVHDGVPHLIFGDIRKLITEELVQEKYLEYRQVPGSDPPSYEFLWGPRAYVETSKKKVMDFLAKVNETMPGAYSSRYEQALIEEEEKARAEAAAKPGTKGKGRSKTK", "length": 330, "header": "tr|A0A9J7GJ03-1|A0A9J7GJ03_CRIGR Isoform 1 of Melanoma-associated antigen B4 OS=Cricetulus griseus OX=10029 GN=LOC100756362 PE=4 SV=1 CANONICAL=A0A9J7GJ03-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03/entry#A0A9J7GJ03-1", "sequence": { "sequence": "MPRGKKSKARAREKRRQIHDEAHGQNDAQAKAAEKEESPACSDQGSGDGKPSNSAGFPEGKAPTITPSKGMHCRSGKGAKGKEEKQGRSLRAPKSTESMQMDLISRKAGMLVEYMLCKYKIKQPARRGEMLKIINKRFKEHFPEILKKASYRLDMVFGLELKEIQPNGQSYMLVSKLDFEDDGSRSNEMGLPNRGILIPLLSVIYLNGYCAPEEEVWHFLNMLGVHDGVPHLIFGDIRKLITEELVQEKYLEYRQVPGSDPPSYEFLWGPRAYVETSKKKVMDFLAKVNETMPGAYSSRYEQALIEEEEKARAEAAAKPGTKGKGRSKTK", "length": 330, "header": "tr|A0A9J7GJ03-1|A0A9J7GJ03_CRIGR Isoform 1 of Melanoma-associated antigen B4 OS=Cricetulus griseus OX=10029 GN=LOC100756362 PE=4 SV=1 CANONICAL=A0A9J7GJ03-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756362", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756362", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ03" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 303, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJ09-1", "uniprot_ac": "A0A9J7GJ09", "uniprot_id": "A0A9J7GJ09_CRIGR", "mass": { "chemical_mass": 84076.0, "monoisotopic_mass": 84076.0 }, "refseq": { "ac": "XP_027288176", "name": "LOW QUALITY PROTEIN: NUT family member 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288176" }, "gene_names": [ { "name": "LOC100756013", "type": "recommended", "evidence": [ { "id": "A0A9J7GJ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ09" } ] }, { "name": "LOC100756013", "type": "synonym", "evidence": [ { "id": "XP_027288176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288176" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: NUT family member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027288176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288176" }, { "id": "A0A9J7GJ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ09/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 2 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277252.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288176" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ09", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ09" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756013", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ09", "locus": {} } ], "crossref": [ { "id": "100756013", "url": "https://www.ncbi.nlm.nih.gov/gene/100756013", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024309", "database": "InterPro", "categories": [ "Protein 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"MDPSRQAWXLSKPVGITSEASSLGQNMTVNLDASVSTFATLPVLPPAPQPTFQLFWESPEPLLTGSISPWNPLVLSALPGMSLVAEDGSTTLGTAVPLNIVQVGKTGRPVQAMPNANLFLTQVPLKCNVPVTQGGVIGCLALHFMTTPEANTFINTQIASAFQSQDGLWDLGSHPPTTQPVVQLVPVQSPGNSAPPPKGXPANVQTNSPETRLSKPDSVYGNIRRWQHIKILVQQHLFYTPDMSSFSCFLIPLLRSLAQRKPTMNVEEGLWRGLQEWQCTCNYDQIIFFEMAEKFTEFDSAEEKENSRLEMMRSIKCHVLTTTRQDPSRPPNSEVFEESACNSMKTGSKTDPARLPVLRHRQLQKTEAPMEIPPEAMQEYMDIMDWLERLPQSYTGEPTEKEEDENSEPEQEEDDFYSDAGVLSNIDELCSQKHFIDEVEDIINPKFVAEILSSKAEMDILSLMKELEYEEEFSVEQMVEEHSLALKKKGCKRATLNPGAPQILSNASVPTVYPGAKREGHGPQRGTSAQKRSSPVPSLDQQCPGASNAEIVGPRPIVFPSIQCLHSLGDIGYTVIPYGRGAHRQSPGPRCAMSLRGVSAMXEFQEALGRTIEDKEELPSLSFLLCSYYRLVPWKLSGYLCPYTGLSDSASIPKPLSPKRSDLSPDPSSTDKSEEPALIGGLNPMAKRSNSGIGHGIFEGPLSALGLTHSLQAQKKVESIRTRKRKRKKWHCATCGISPQSWQSFTLPPPCTPIPKMKKKTH", "length": 762, "header": "tr|A0A9J7GJ09-1|A0A9J7GJ09_CRIGR Isoform 1 of LOW QUALITY PROTEIN: NUT family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756013 PE=3 SV=1 CANONICAL=A0A9J7GJ09-1" }, "isoforms": [ { 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"MDEDGLELQPQAPNSFFDATGAGATHMDGDQIVVEVQETVFVSDVVDSDITVHNFVPDDPDSVVIQDVIEDVVIEDVQCPDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVADVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVGQQDDDKNNCEDYLMISLDDAGKIEHDGSSGLTMDTESEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDPNNSIRVPREKMVYMTVNDSQQEDEDLNVAEIADEVYMEVIVGEEDAAAAAAAAVHEQQIDDNEMKTFMPIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKTEKAIECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKHMRIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLMTFSDTKEVQQHALIHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKKMHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGLP", "length": 799, "header": "tr|A0A9J7GJ22-1|A0A9J7GJ22_CRIGR Isoform 1 of Zinc finger X-chromosomal protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfx PE=3 SV=1 CANONICAL=A0A9J7GJ22-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22/entry#A0A9J7GJ22-1", "sequence": { "sequence": "MDEDGLELQPQAPNSFFDATGAGATHMDGDQIVVEVQETVFVSDVVDSDITVHNFVPDDPDSVVIQDVIEDVVIEDVQCPDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVADVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVGQQDDDKNNCEDYLMISLDDAGKIEHDGSSGLTMDTESEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDPNNSIRVPREKMVYMTVNDSQQEDEDLNVAEIADEVYMEVIVGEEDAAAAAAAAVHEQQIDDNEMKTFMPIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKTEKAIECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKHMRIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLMTFSDTKEVQQHALIHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKKMHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGLP", "length": 799, "header": "tr|A0A9J7GJ22-1|A0A9J7GJ22_CRIGR Isoform 1 of Zinc finger X-chromosomal protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfx PE=3 SV=1 CANONICAL=A0A9J7GJ22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22/entry#A0A9J7GJV7-1", "sequence": { "sequence": "MDEDGLELQPQAPNSFFDATGAGATHMDGDQIVVEVQETVFVSDVVDSDITVHNFVPDDPDSVVIQDVIEDVVIEDVQCPDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVADVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVGQQDDDKNNCEDYLMISCPIPYIWIM", "length": 219, "header": "tr|A0A9J7GJV7-1|A0A9J7GJV7_CRIGR Computationally mapped isoform of Zinc finger X-chromosomal protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Zfx PE=4 SV=1 CANONICAL=A0A9J7GJ22-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GNX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22/entry#A0A9J7GNX6-1", "sequence": { "sequence": "MDEDGLELQPQAPNSFFDATGAGATHMDGDQIVVEVQETVFVSDVVDSDITVHNFVPDDPDSVVIQDVIEDVVIEDVQCPDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESIHVADVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVGQQDDDKNNCEDYLMISCGTVDIVESEPENDHGVELLDPNNSIRVPREKMVYMTVNDSQQEDEDLNVAEIADEVYMEVIVGEEDAAAAAAAAVHEQQIDDNEMKTFMPIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKTEKAIECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKHMRIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLMTFSDTKEVQQHALIHQESKTHQCLHCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKKMHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGLP", "length": 749, "header": "tr|A0A9J7GNX6-1|A0A9J7GNX6_CRIGR Computationally mapped isoform of Zinc finger X-chromosomal protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfx PE=3 SV=1 CANONICAL=A0A9J7GJ22-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769296", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769296", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ22" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": 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"XP_027285697", "name": "protein FAM234B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285697" }, "gene_names": [ { "name": "Fam234b", "type": "recommended", "evidence": [ { "id": "A0A9J7GKL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8" } ] }, { "name": "Fam234b", "type": "synonym", "evidence": [ { "id": "XP_027285697", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285697" } ] } ], "protein_names": [ { "name": "Protein FAM234B isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7GKL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8/entry#names_and_taxonomy" } ] }, { "name": "protein FAM234B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027285697", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285697" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285697" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKL8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam234b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773310", "url": "https://www.ncbi.nlm.nih.gov/gene/100773310", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773310", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKL8", "url": "https://www.orthodb.org/?gene=A0A9J7GKL8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21419", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21419", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21419:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21419:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285697", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKL8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0T8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVLSRALKLPGKKSPDLGEYDPLTQADSDESEDDLVLNLQQKNGGVKNGKSALGDLPEPDSDADLAGAAKPHLSEVVPEGYPSEPLGGLEQKATSSLVSYVRTSVFLLTLVISMVLVLLCAFLIPCPPRDLHSTWSRRLGSQGGPFCFIMCTPGGDLSPLELADVNRDGLRDVLLSFVTTRNGTEGGGGSQPTADLVCLSGMNGSTLWSSPLPEEAQDVTCLDLTPGSVAKTICLVTGTRKMLSAFNATSGKVMWTLNPNHLSNGTLAAPVVVLPDLDGDGVRDLVVLAIGELQPDLCFLLVSGRTGSPIGRPVKYNIVGVGNLIGPQVYITTSGAAYILFGFGNIQAVALRDIFVQAQNRDSSPPSLQIEEPEWEKRRSVNLSELIDVYSDGVELLQLVKAPDSNCSSLLITTRQGLVLLRGQDLMPLWKLSLQGLRSQPTPGYFTDDQTLDFLLQTQDGVGMKKMTVVDGASGSIIWSHSIPCHMKETPTTSAITSDQKSVFLFWAEALTTASLNSDDVPGAEPPGLYHLYLLHPAFPSILLDLTNTTGIVTASEVGINDIWKDAFYVTRTTGMSPDGHPTSLVISKLSLRWALMEGQMVQLKETTPKTGRGELRRFLSRIKFVDPPYQQI", "length": 635, "header": "tr|A0A9J7GKL8-1|A0A9J7GKL8_CRIGR Isoform 1 of Protein FAM234B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam234b PE=3 SV=1 CANONICAL=A0A9J7GKL8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8/entry#A0A9J7GJ29-1", "sequence": { "sequence": "MATVLSRALKLPGKKSPDLGEYDPLTQADSDESEDDLVLNLQQKNGGVKNGKSALGDLPEPDSDADLAGAAKPHLSEVVPEGYPSEPLGGLEQKATSSLVSYVRTSVFLLTLVISMVLVLLCAFLIPCPPRDLHSTWSRRLGSQGGGDLSPLELADVNRDGLRDVLLSFVTTRNGTEGGGGSQPTADLVCLSGMNGSTLWSSPLPEEAQDVTCLDLTPGSVAKTICLVTGTRKMLSAFNATSGKVMWTLNPNHLSNGTLAAPVVVLPDLDGDGVRDLVVLAIGELQPDLCFLLVSGRTGSPIGRPVKYNIVGVGNLIGPQVYITTSGAAYILFGFGNIQAVALRDIFVQAQNRDSSPPSLQIEEPEWEKRRSVNLSELIDVYSDGVELLQLVKAPDSNCSSLLITTRQGLVLLRGQDLMPLWKLSLQGLRSQPTPGYFTDDQTLDFLLQTQDGVGMKKMTVVDGASGSIIWSHSIPCHMKETPTTSAITSDQKSVFLFWAEALTTASLNSDDVPGAEPPGLYHLYLLHPAFPSILLDLTNTTGIVTASEVGINDIWKDAFYVTRTTGMSPDGHPTSLVISKLSLRWALMEGQMVQLKETTPKTGRGELRRFLSRIKFVDPPYQQI", "length": 625, "header": "tr|A0A9J7GJ29-1|A0A9J7GKL8_CRIGR Computationally mapped isoform of Protein FAM234B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam234b PE=3 SV=1 CANONICAL=A0A9J7GKL8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8/entry#A0A9J7GKL8-1", "sequence": { "sequence": "MATVLSRALKLPGKKSPDLGEYDPLTQADSDESEDDLVLNLQQKNGGVKNGKSALGDLPEPDSDADLAGAAKPHLSEVVPEGYPSEPLGGLEQKATSSLVSYVRTSVFLLTLVISMVLVLLCAFLIPCPPRDLHSTWSRRLGSQGGPFCFIMCTPGGDLSPLELADVNRDGLRDVLLSFVTTRNGTEGGGGSQPTADLVCLSGMNGSTLWSSPLPEEAQDVTCLDLTPGSVAKTICLVTGTRKMLSAFNATSGKVMWTLNPNHLSNGTLAAPVVVLPDLDGDGVRDLVVLAIGELQPDLCFLLVSGRTGSPIGRPVKYNIVGVGNLIGPQVYITTSGAAYILFGFGNIQAVALRDIFVQAQNRDSSPPSLQIEEPEWEKRRSVNLSELIDVYSDGVELLQLVKAPDSNCSSLLITTRQGLVLLRGQDLMPLWKLSLQGLRSQPTPGYFTDDQTLDFLLQTQDGVGMKKMTVVDGASGSIIWSHSIPCHMKETPTTSAITSDQKSVFLFWAEALTTASLNSDDVPGAEPPGLYHLYLLHPAFPSILLDLTNTTGIVTASEVGINDIWKDAFYVTRTTGMSPDGHPTSLVISKLSLRWALMEGQMVQLKETTPKTGRGELRRFLSRIKFVDPPYQQI", "length": 635, "header": "tr|A0A9J7GKL8-1|A0A9J7GKL8_CRIGR Isoform 1 of Protein FAM234B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam234b PE=3 SV=1 CANONICAL=A0A9J7GKL8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8/entry#A0A9J7K0T8-1", "sequence": { "sequence": "MATVLSRALKLPGKKSPDLGEYDPLTQADSDESEDDLVLNLQQKNGGVKNGKSALGDLPEPDSDADLAGAAKPHLSEVVPEGYPSEPLGGLEQKATSSLVSYVRTSVFLLTLVISMVLVLLCAFLIPCPPRDLHSTWSRRLGSQGGPFCFIMCTPGGDLSPLELADVNRDGLRDVLLSFVTTRNGTEGGGGSQPTADLVCLSGMNGSTLWSSPLPEEAQDVTCLDLTPGSVAKTICLVTGTRKMLSAFNATSGKVMWTLNPNHLSNGTLAAPVVVLPDLDGDGVRDLVVLAIGELQPDLCFLLVSGRTGSPIGRPVKYNIVGVGNLIGPQVYITTSGAAYILFGFGNIQAVALRDIFVQAQNRDSSPPSLQIEEPEWEKRRSVNLSELIDVYSDGVELLQLVKAPDSNCSSLLITTRQGLVLLRGQDLMPLWKLSLQGLRSQPTPGYFTDDQTLDFLLQTQDGVGMKKMTVVDGASGSIIWSHSIPCHMKETPTTSAITSDQKSVFLFWAEALTTASLNSDDVPGAEPPGLYHLYLLHPAFPSILLDLTNTTGIVTASEVGINDIWKDAFYVTRTTGMSPDGHPTSLVISKLSLRWALMEGQMVQLKETTPKTGRGELRRFLSRIKFVDPPYQI", "length": 634, "header": "tr|A0A9J7K0T8-1|A0A9J7K0T8_CRIGR Computationally mapped isoform of Protein FAM234B isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam234b PE=3 SV=1 CANONICAL=A0A9J7GKL8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 444, "start_aa": "Thr", "end_pos": 444, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr444", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ29" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ29" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKL8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GKL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL8" }, { "id": "PF23727", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23727" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM234A/B beta-propeller", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 627, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 444 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 266, "end_pos": 268 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 408, "end_pos": 410 }, { "start_pos": 550, "end_pos": 552 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJ32-1", "uniprot_ac": "A0A9J7GJ32", "uniprot_id": "A0A9J7GJ32_CRIGR", "mass": { "chemical_mass": 30796.0, "monoisotopic_mass": 30796.0 }, "refseq": { "ac": "XP_027287736", "name": "paired mesoderm homeobox protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287736" }, "gene_names": [ { "name": "LOC100767067", "type": "recommended", "evidence": [ { "id": "A0A9J7GJ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ32" } ] }, { "name": "LOC100767067", "type": "synonym", "evidence": [ { "id": "XP_027287736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287736" } ] } ], "protein_names": [ { "name": "Paired mesoderm homeobox protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GJ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ32/entry#names_and_taxonomy" } ] }, { "name": "paired mesoderm homeobox protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287736" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 32% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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:: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285877", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285877" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mrps35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "103162619", "url": "https://www.ncbi.nlm.nih.gov/gene/103162619", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103162619", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162619", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJA5", "url": "https://www.orthodb.org/?gene=A0A9J7GJA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13490:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13490:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285877", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285877", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVAALQLRLILCPGSRGLRSFASAARPAASRGGPRSASRSERPLRRKALPPRTEKMDVDQDWPSVYPVAAPFKPSAVPLPIRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCEALKDFCTEWPAALDTDEKCEEHFPIEVDTADYVSSGPSVRNPKARVVTLRVKLSSLNLDNHAKKKLIKLVGDRYCKTTDVLTITTDRCPLKRQNYDYALYLLTVLYHESWKTEEWEKNKTEEDMEEYVWENSSSEKNVLQTLLQMRASDGSSVAPSREELLGTKEVEDYQKCVVQLKNEGENEENLSQYKESVKRLLNLA", "length": 321, "header": "tr|A0A9J7GJA5-1|A0A9J7GJA5_CRIGR Isoform 1 of 28S ribosomal protein S35, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Mrps35 PE=4 SV=1 CANONICAL=A0A9J7GJA5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5/entry#A0A9J7GJ89-1", "sequence": { "sequence": "MTKRPGTEKAHCSFCGALVGSASRSERPLRRKALPPRTEKMDVDQDWPSVYPVAAPFKPSAVPLPIRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCEALKDFCTEWPAALDTDEKCEEHFPIEVDTADYVSSGPSVRNPKARVVTLRVKLSSLNLDNHAKKKLIKLVGDRYCKTTDVLTITTDRCPLKRQNYDYALYLLTVLYHESWKTEEWEKNKTEEDMEEYVWENSSSEKNVLQTLLQMRASDGSSVAPSREELLGTKEVEDYQKCVVQLKNEGENEENLSQYKESVKRLLNLA", "length": 305, "header": "tr|A0A9J7GJ89-1|A0A9J7GJA5_CRIGR Computationally mapped isoform of 28S ribosomal protein S35, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Mrps35 PE=4 SV=1 CANONICAL=A0A9J7GJA5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5/entry#A0A9J7GJA5-1", "sequence": { "sequence": "MAVAALQLRLILCPGSRGLRSFASAARPAASRGGPRSASRSERPLRRKALPPRTEKMDVDQDWPSVYPVAAPFKPSAVPLPIRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCEALKDFCTEWPAALDTDEKCEEHFPIEVDTADYVSSGPSVRNPKARVVTLRVKLSSLNLDNHAKKKLIKLVGDRYCKTTDVLTITTDRCPLKRQNYDYALYLLTVLYHESWKTEEWEKNKTEEDMEEYVWENSSSEKNVLQTLLQMRASDGSSVAPSREELLGTKEVEDYQKCVVQLKNEGENEENLSQYKESVKRLLNLA", "length": 321, "header": "tr|A0A9J7GJA5-1|A0A9J7GJA5_CRIGR Isoform 1 of 28S ribosomal protein S35, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Mrps35 PE=4 SV=1 CANONICAL=A0A9J7GJA5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ89" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ89" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103162619", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162619", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial small ribosomal subunit", "id": "GO:0005763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005763", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial translation", "id": "GO:0032543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032543", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA5" }, { "id": "PF10213", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small ribosomal subunit protein mS35 mitochondrial conserved", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 232, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 306, "end_pos": 308 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7GJM2-1", "uniprot_ac": "A0A9J7GJM2", "uniprot_id": "A0A9J7GJM2_CRIGR", "mass": { "chemical_mass": 47898.0, "monoisotopic_mass": 47898.0 }, "refseq": { "ac": "XP_027288618", "name": "periphilin-1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288618" }, "gene_names": [ { "name": "LOC100769134", "type": "recommended", "evidence": [ { "id": "A0A9J7GJM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ] }, { "name": "LOC100769134", "type": "synonym", "evidence": [ { "id": "XP_027288618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288618" } ] } ], "protein_names": [ { "name": "Periphilin-1 isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7GJM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#names_and_taxonomy" } ] }, { "name": "periphilin-1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027288618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288618" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288618.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769134", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22896", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22896", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769134", "url": "https://www.ncbi.nlm.nih.gov/gene/100769134", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769134", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769134", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJM2", "url": "https://www.orthodb.org/?gene=A0A9J7GJM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15836", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15836", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15836:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15836:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25234", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25234", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJ93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ93-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPPMRDMRSPVRDMRPSVRDMRSPVRDKRPPVRDKRQPVRDMRPSVRDMRSPVHDMRSPELDKRPPVQDKRWPVRDMRAPELDKTAPLRDKRPPVRDKSPPVLDMRPPKLARHDEEGYSRVDYGECDKGHRFSHDPRRGSPHKGDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKVLDQPSWLTEKELAEDASKWDKGKPEKADENTSIDSSEFETGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 414, "header": "tr|A0A9J7GJM2-1|A0A9J7GJM2_CRIGR Isoform 1 of Periphilin-1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJ93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#A0A9J7GJ93-1", "sequence": { "sequence": "MWSKGRYDYKRLPRERSPSWSHVSDGYHRVANDVPKRPPLRDKRAPSPPVLDMRPPKLARHDEEGYSRVDYGECDKGHRFSHDPRRGSPHKGDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKVLDQPSWLTEKELAEDASKWDKGKPEKADENTSIDSSEFETGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 361, "header": "tr|A0A9J7GJ93-1|A0A9J7GJM2_CRIGR Computationally mapped isoform of Periphilin-1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#A0A9J7GJM2-1", "sequence": { "sequence": "MRPPMRDMRSPVRDMRPSVRDMRSPVRDKRPPVRDKRQPVRDMRPSVRDMRSPVHDMRSPELDKRPPVQDKRWPVRDMRAPELDKTAPLRDKRPPVRDKSPPVLDMRPPKLARHDEEGYSRVDYGECDKGHRFSHDPRRGSPHKGDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKVLDQPSWLTEKELAEDASKWDKGKPEKADENTSIDSSEFETGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 414, "header": "tr|A0A9J7GJM2-1|A0A9J7GJM2_CRIGR Isoform 1 of Periphilin-1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#A0A9J7GMS3-1", "sequence": { "sequence": "MWSKGRYDYKRLPRERSPSWSHVRDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKTGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 253, "header": "tr|A0A9J7GMS3-1|A0A9J7GMS3_CRIGR Computationally mapped isoform of Periphilin-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GP82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#A0A9J7GP82-1", "sequence": { "sequence": "MWSKGRYDYKRLPRERSPSWSHVSDGYHRVANDVPKRPPLRDKRAPVHDEEGYSRVDYGECDKGHRFSHDPRRGSPHKGDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKVLDQPSWLTEKELAEDASKWDKGKPEKADENTSIDSSEFETGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 348, "header": "tr|A0A9J7GP82-1|A0A9J7GP82_CRIGR Computationally mapped isoform of Periphilin-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2/entry#A0A9J7K2P5-1", "sequence": { "sequence": "MWSKGRYDYKRLPRERSPSWSHVRDDSGYRRSRGHHFTRQKSEYRNMRDAFRRKSFYSSQYSRDRSPHKRDAPFFRESPVGQKDAPHRRSGSSLSSRSYSPEGSKTSSFHQSQYTSKEKSIQSSKTSGDTSPSRSSEVSSSKVLDQPSWLTEKELAEDASKWDKGKPEKADENTSIDSSEFETGSTGPVFIDQTEEPESNTTDGTELCKDSQLSSRSKAIASKTKEIQQAYRQDFETFGMVVKMLVDKEPSLEKSIQFALRQNLQEMGERCVEELKRFITEYDNSTQDSGDRF", "length": 293, "header": "tr|A0A9J7K2P5-1|A0A9J7K2P5_CRIGR Computationally mapped isoform of Periphilin-1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100769134 PE=4 SV=1 CANONICAL=A0A9J7GJM2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJ93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJ93" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769134", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769134", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ], "pmid": "" }, { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ], "pmid": "" }, { "name": "protein localization to heterochromatin", "id": "GO:0097355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM2" }, { "id": "PF25234", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Periphilin-1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 324, "end_pos": 406, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJA2-1", "uniprot_ac": "A0A9J7GJA2", "uniprot_id": "A0A9J7GJA2_CRIGR", "mass": { "chemical_mass": 66434.0, "monoisotopic_mass": 66434.0 }, "refseq": { "ac": "XP_027287246", "name": "nudC domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287246" }, "gene_names": [ { "name": "Nudcd1", "type": "recommended", "evidence": [ { "id": "A0A9J7GJA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2" } ] }, { "name": "Nudcd1", "type": "synonym", "evidence": [ { "id": "XP_027287246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287246" } ] } ], "protein_names": [ { "name": "NudC domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7GJA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2/entry#names_and_taxonomy" } ] }, { "name": "nudC domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287246" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287246" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nudcd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJA2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJA2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768048", "url": "https://www.ncbi.nlm.nih.gov/gene/100768048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768048", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768048", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJA2", "url": "https://www.orthodb.org/?gene=A0A9J7GJA2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21664", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21664", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21664:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21664:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04969", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04969", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJA2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDAWYQDSVYYIDNLGRIMNLTVMLDTALGKPREVFRLPTDVTAYDNRLCASIHFTSPAWATLSDGTGRLYVIGTGDRGNSPEKWEIMFNEELGNPFIIIHSISLPDSEEHSVAVLLLRIEKEELDLKGSGFHVSLEWVTVSKKKEDGTKYEITKHHVLRGKSVPHYAAIEPSGNGLMIVSYKSFTAVSIDQSLEESMDEDRPEKTKVDPLYYWQQTDDDLTVTVRLPENCAKEDIRVQFLPESINVTLKDVQVLEGRLYSSVDHESSTWTMKENDGLEISLIKKNEGLTWPELLVGDKQGELLRDPAQCAEIAERLMHLTSDELNPNPDKEKPPCNAQELEECDLFFEESSSLCRFDGNTLKTTHVVSLGSNQYLFSVVVDPKEMPCFCLRHDVDALLWQPHCNKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPTPMSTVLYNRKEGRHVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN", "length": 582, "header": "tr|A0A9J7GJA2-1|A0A9J7GJA2_CRIGR Isoform 1 of NudC domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Nudcd1 PE=4 SV=1 CANONICAL=A0A9J7GJA2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2/entry#A0A9J7GJA2-1", "sequence": { "sequence": "MEAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDAWYQDSVYYIDNLGRIMNLTVMLDTALGKPREVFRLPTDVTAYDNRLCASIHFTSPAWATLSDGTGRLYVIGTGDRGNSPEKWEIMFNEELGNPFIIIHSISLPDSEEHSVAVLLLRIEKEELDLKGSGFHVSLEWVTVSKKKEDGTKYEITKHHVLRGKSVPHYAAIEPSGNGLMIVSYKSFTAVSIDQSLEESMDEDRPEKTKVDPLYYWQQTDDDLTVTVRLPENCAKEDIRVQFLPESINVTLKDVQVLEGRLYSSVDHESSTWTMKENDGLEISLIKKNEGLTWPELLVGDKQGELLRDPAQCAEIAERLMHLTSDELNPNPDKEKPPCNAQELEECDLFFEESSSLCRFDGNTLKTTHVVSLGSNQYLFSVVVDPKEMPCFCLRHDVDALLWQPHCNKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPTPMSTVLYNRKEGRHVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN", "length": 582, "header": "tr|A0A9J7GJA2-1|A0A9J7GJA2_CRIGR Isoform 1 of NudC domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Nudcd1 PE=4 SV=1 CANONICAL=A0A9J7GJA2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JYD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJA2/entry#A0A9J7JYD2-1", "sequence": { "sequence": "MEAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDAWYQDSVYYIDNLGRIMNLTVMLDTALGKPREVFRLPTDVTAYDNRLCASIHFTSPAWATLSDGTGRLYVIGTGDRGNSPEKWEIMFNEELGNPFIIIHSISLPDSEEHSVAVLLLRIEKEELDLKGSGFHVSLEWVTVSKKKEDGTKYEITKHHVLRGKSVPHYAAIEPSGNGLMIVSYKSFTAVSIDQSLEESMDEDRPEKTKDPLYYWQQTDDDLTVTVRLPENCAKEDIRVQFLPESINVTLKDVQVLEGRLYSSVDHESSTWTMKENDGLEISLIKKNEGLTWPELLVGDKQGELLRDPAQCAEIAERLMHLTSDELNPNPDKEKPPCNAQELEECDLFFEESSSLCRFDGNTLKTTHVVSLGSNQYLFSVVVDPKEMPCFCLRHDVDALLWQPHCNKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPTPMSTVLYNRKEGRHVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN", "length": 581, "header": "tr|A0A9J7JYD2-1|A0A9J7JYD2_CRIGR Computationally mapped isoform of NudC domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Nudcd1 PE=4 SV=1 CANONICAL=A0A9J7GJA2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287522", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287522" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Med12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6", "locus": {} } ], "crossref": [ { "id": "100755999", "url": "https://www.ncbi.nlm.nih.gov/gene/100755999", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755999", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755999", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJC6", "url": "https://www.orthodb.org/?gene=A0A9J7GJC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46007", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46007", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46007:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46007:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09497", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09497", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287522", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287522", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5A9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5A9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9I8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0A7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRQAQQQQQHQQQQPQQQQQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY", "length": 2187, "header": "tr|A0A9J7GJC6-1|A0A9J7GJC6_CRIGR Isoform 1 of Mediator of RNA polymerase II transcription subunit 12 isoform X10 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7GJC6-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRQAQQQQQHQQQQPQQQQQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY", "length": 2187, "header": "tr|A0A9J7GJC6-1|A0A9J7GJC6_CRIGR Isoform 1 of Mediator of RNA polymerase II transcription subunit 12 isoform X10 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7H5A9-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKISQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRVRPWGCV", "length": 2105, "header": "tr|A0A9J7H5A9-1|A0A9J7H5A9_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X1 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7H6J8-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPADPTRHLQQRPSGYVHQQAPTYGHGLTSTQS", "length": 1995, "header": "tr|A0A9J7H6J8-1|A0A9J7H6J8_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X7 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7H8N7-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKISQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPADPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRVRPWGCV", "length": 2080, "header": "tr|A0A9J7H8N7-1|A0A9J7H8N7_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X5 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7H9H5-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPADPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRVRPWGCV", "length": 2081, "header": "tr|A0A9J7H9H5-1|A0A9J7H9H5_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X4 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7H9I8-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRVRPWGCV", "length": 2103, "header": "tr|A0A9J7H9I8-1|A0A9J7H9I8_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7HAP2-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRQQQQHQQQQPQQQQQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY", "length": 2181, "header": "tr|A0A9J7HAP2-1|A0A9J7HAP2_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X11 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7K0A7-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQS", "length": 2020, "header": "tr|A0A9J7K0A7-1|A0A9J7K0A7_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X6 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6/entry#A0A9J7KDD2-1", "sequence": { "sequence": "MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPPGSGGCGSTIGPLPHDIEVAIRQWDYNEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDPERKETEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKMEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPTNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKQGAAPPSTEERKKKSTKGKKRSQPATKSEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLNYRQNSLGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQTAATQQQQQQQQQQQQQQQYHIRQQQQQQQILRVRPWGCV", "length": 2102, "header": "tr|A0A9J7KDD2-1|A0A9J7KDD2_CRIGR Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 12 isoform X3 OS=Cricetulus griseus OX=10029 GN=Med12 PE=3 SV=1 CANONICAL=A0A9J7GJC6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 342, "start_aa": "Thr", "end_pos": 342, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr342", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755999", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755999", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1106, "end_pos": 1108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1268, "end_pos": 1270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1592, "end_pos": 1594, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 961, "end_pos": 963, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GJC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJC6" }, { "id": "SM01281", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01281" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mediator complex subunit Med12", "eco_id": "ECO_0000259", "start_pos": 101, "end_pos": 161, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 342 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1106, "end_pos": 1108 }, { "start_pos": 1268, "end_pos": 1270 }, { "start_pos": 1592, "end_pos": 1594 }, { "start_pos": 72, "end_pos": 74 }, { "start_pos": 961, "end_pos": 963 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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}, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GJE3-1", "uniprot_ac": "A0A9J7GJE3", "uniprot_id": "A0A9J7GJE3_CRIGR", "mass": { "chemical_mass": 24911.0, "monoisotopic_mass": 24911.0 }, "refseq": { "ac": "XP_027287960", "name": "uncharacterized protein LOC100752936", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287960" }, "gene_names": [ { "name": "LOC100752936", "type": "recommended", "evidence": [ { "id": "A0A9J7GJE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJE3" } ] }, { "name": "LOC100752936", "type": "synonym", "evidence": [ { "id": "XP_027287960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287960" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC100752936", "type": "synonym", "evidence": [ { "id": "A0A9J7GJE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJE3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC100752936", "type": "synonym", "evidence": [ { "id": "XP_027287960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287960" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287381" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG1", "locus": {} } ], "crossref": [ { "id": "113837470", "url": "https://www.ncbi.nlm.nih.gov/gene/113837470", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837470", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837470", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJG1", "url": "https://www.orthodb.org/?gene=A0A9J7GJG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCVARVYHGWLFEGLGRDKAEELLQLPDTKMGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVTHYSEVADGLCCVLTTPCLAQNTPAPTAHPSPCTNSGSSVTLRQKTFDWKRVSRLQDHPEGAENPLTVDESLFSYGLRESIASYLSLTGDDSASFDRRKKKSLSLVYSGSKRKSSFFAAPQYFED", "length": 208, "header": "tr|A0A9J7GJG1-1|A0A9J7GJG1_CRIGR Isoform 1 of Src-like-adapter OS=Cricetulus griseus OX=10029 GN=LOC113837470 PE=4 SV=1 CANONICAL=A0A9J7GJG1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG1/entry#A0A9J7GJG1-1", "sequence": { "sequence": "MCVARVYHGWLFEGLGRDKAEELLQLPDTKMGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVTHYSEVADGLCCVLTTPCLAQNTPAPTAHPSPCTNSGSSVTLRQKTFDWKRVSRLQDHPEGAENPLTVDESLFSYGLRESIASYLSLTGDDSASFDRRKKKSLSLVYSGSKRKSSFFAAPQYFED", "length": 208, "header": "tr|A0A9J7GJG1-1|A0A9J7GJG1_CRIGR Isoform 1 of Src-like-adapter OS=Cricetulus griseus OX=10029 GN=LOC113837470 PE=4 SV=1 CANONICAL=A0A9J7GJG1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288006", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288006" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761274", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJG3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJG3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761274", "url": "https://www.ncbi.nlm.nih.gov/gene/100761274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP95-1", "database": "UniProtKB", "categories": [ "Protein" ] 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"length": 1078, "header": "tr|A0A9J7GJG3-1|A0A9J7GJG3_CRIGR Isoform 1 of Mastermind-like domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7GJG3-1", "sequence": { "sequence": 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"length": 1078, "header": "tr|A0A9J7GJG3-1|A0A9J7GJG3_CRIGR Isoform 1 of Mastermind-like domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GK89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7GK89-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQGCCHRCAWTTAALWLEHQHQQWNSLTSTHGHVPPSNLTHVDKACKLGEARPPQVSLGRQPPSRQALGSESFLPGSSFAHELARVTSSYSTSEAAPWGGWDPKAWRQVPAPLLPSCDAAAREAEIRSYGNDP", "length": 788, "header": "tr|A0A9J7GK89-1|A0A9J7GK89_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7GKA8-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQTHVDKACKLGEARPPQVSLGRQPPSRQALGSESFLPGSSFAHELARVTSSYSTSEAAPWGGWDPKAWRQVPAPLLPSCDAAAREAEIRSYGNDP", "length": 751, "header": "tr|A0A9J7GKA8-1|A0A9J7GKA8_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GP95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7GP95-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQGCCHRCAWTTAALWLEHQHQQWNSLTSTHGHVPPSNLQGKQRSGPMAMTPKQRNSHIAQQMTQFQVPEQVISKCSQIKARSPSNQHMMPPKTELLQDNLIPTILPPTNHMGIFSSTLKKQQVNTGLPFSISSGSGQEPLNSLGSVCPKAKAMPPEVPLPKLCVSPLGSQPLTPYQLSLPSVPIKSPVFSNAVLEVAAAAVATPVSKESPLSQVDNSMLQHFDSNSIVFAKTPISIPATALAFPSQQAVAQANQMAPGARPGQKVPAALARPRFSLLGNHSLVRSPAQGPVPVLSTKSLQQSMASCSPMSPVQGLEPPSYAAAIVATSQSPGTLIRTGTAPEPRDNVLPQAQSPTDGLISPSSAGSEVDFMEELLEVSSVAPAEDWVCNLRLIDDILEQRAAAQNATAQNADQVTQGAEEL", "length": 1077, "header": "tr|A0A9J7GP95-1|A0A9J7GP95_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K284-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7K284-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQQGKQRSGPMAMTPKQRNSHIAQQMTQFQAVPEQVISKCSQIKARSPSNQHMMPPKTELLQDNLIPTILPPTNHMGIFSSTLKKQQVNTGLPFSISSGSGQEPLNSLGSVCPKAKAMPPEVPLPKLCVSPLGSQPLTPYQLSLPSVPIKSPVFSNAVLEVAAAAVATPVSKESPLSQVDNSMLQHFDSNSIVFAKTPISIPATALAFPSQQAVAQANQMAPGARPGQKVPAALARPRFSLLGNHSLVRSPAQGPVPVLSTKSLQQSMASCSPMSPVQGLEPPSYAAAIVATSQSPGTLIRTGTAPEPRDNVLPQAQSPTDGLISPSSAGSEVDFMEELLEVSSVAPAEDWVCNLRLIDDILEQRAAAQNATAQNADQVTQGAEEL", "length": 1041, "header": "tr|A0A9J7K284-1|A0A9J7K284_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7KC26-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQGCCHRCAWTTAALWLEHQHQQWNSLTSTHGHVPPSNLQGKQRSGPMAMTPKQRNSHIAQQMTQFQAVPEQVISKCSQIKARSPSNQHMMPPKTELLQDNLIPTILPPTNHMGIFSSTLKKQQVNTGLPFSISSGSGQEPLNSLGSVCPKAKAMPPEVPLPKLCVSPLGSQPLTPYQLSLPSVPIKSPVFSNAVLEVAAAAVATPVSKESPLSQVDNSMLQHFDSNSIVFAKTPISIPATALAFPSQQAVAQANQMAPGPDSAYWAITAL", "length": 926, "header": "tr|A0A9J7KC26-1|A0A9J7KC26_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3/entry#A0A9J7KDG0-1", "sequence": { "sequence": "MDDWKSRLVIESMLPHFNMVGNRQEPRKLQESGTSKRRQEGDNFHFAGMADGGYPNKIKRPCLEDVTLSMGPGAHPTSLSTELHMPTLTMNPSSADLGVAGQSLLLENNPLDNNAVNSSAMGSPFGVSSAADTGLKGHAVPYYEKNNSMPAVDQELQDLLEELTKIQEPSSNDLDLEKILGSKPEEPLVLHHPQAPVGPPTKLPVQMPHMESLGSSKEFASSCSQVTGTSLPILPSSTGISYSIPSTSKQIVSPSSSTAQAQVKNQAQTMLPVTLPPLSVPQWHHAHQLKALAASKQGSATKQQGSNRSWSSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSNNLSGSVVQSSPNALLSSMAPSSNAALGPSLPYAQAKHPGLPHNQQPQFSPQSSILANLVSSTVKSPQGHLISALPTSTPGPSPPYRPENLSSPGLPQQSFTPQYSLIRSLTPTSNLLSQQQQQQQQHHHHHQQQQQQQQQQQQQQQSNSIFKPMTSSQQPKTMSMIMHQGLARSSPEAPEPFTFSNTKPLSHFVSEPSSQKMASMPAPSRQPSLLHYLPQATPAHAPSATASSTATATLQLQQQQQQQQQQQHQHHHHHHHHHQQQQQQQQADQSSFLLQHIMQQPQRFQRMVASDSMPALPGQQGKQRSGPMAMTPKQRNSHIAQQMTQFQVPEQVISKCSQIKARSPSNQHMMPPKTELLQDNLIPTILPPTNHMGIFSSTLKKQQVNTGLPFSISSGSGQEPLNSLGSVCPKAKAMPPEVPLPKLCVSPLGSQPLTPYQLSLPSVPIKSPVFSNAVLEVAAAAVATPVSKESPLSQVDNSMLQHFDSNSIVFAKTPISIPATALAFPSQQAVAQANQMAPGARPGQKVPAALARPRFSLLGNHSLVRSPAQGPVPVLSTKSLQQSMASCSPMSPVQGLEPPSYAAAIVATSQSPGTLIRTGTAPEPRDNVLPQAQSPTDGLISPSSAGSEVDFMEELLEVSSVAPAEDWVCNLRLIDDILEQRAAAQNATAQNADQVTQGAEEL", "length": 1040, "header": "tr|A0A9J7KDG0-1|A0A9J7KDG0_CRIGR Computationally mapped isoform of Mastermind-like domain-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100761274 PE=4 SV=1 CANONICAL=A0A9J7GJG3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 575, "start_aa": "Thr", "end_pos": 575, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr575", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761274", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761274", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1062, "end_pos": 1064, "annotation": "n_glycosylation_sequon" }, { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 936, "end_pos": 938, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 575 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1062, "end_pos": 1064 }, { "start_pos": 117, "end_pos": 119 }, { "start_pos": 146, "end_pos": 148 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 936, "end_pos": 938 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288023" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768776", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH3", "locus": {} } ], "crossref": [ { "id": "100768776", "url": "https://www.ncbi.nlm.nih.gov/gene/100768776", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768776", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768776", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GJH3", "url": "https://www.orthodb.org/?gene=A0A9J7GJH3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10366:SF564", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10366:SF564", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GJH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQAVGGESKRSQVTGTHLTKAKKCTVIGGSGFLGQHMVEQLLARGYAVNVFDIRQGFDNPQVQFFIGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNFIGTKNVIETCKKAGVQVRGMLQ", "length": 129, "header": "tr|A0A9J7GJH3-1|A0A9J7GJH3_CRIGR Isoform 1 of Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100768776 PE=4 SV=1 CANONICAL=A0A9J7GJH3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GJH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH3/entry#A0A9J7GJH3-1", "sequence": { "sequence": "MEQAVGGESKRSQVTGTHLTKAKKCTVIGGSGFLGQHMVEQLLARGYAVNVFDIRQGFDNPQVQFFIGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNFIGTKNVIETCKKAGVQVRGMLQ", "length": 129, "header": "tr|A0A9J7GJH3-1|A0A9J7GJH3_CRIGR Isoform 1 of Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100768776 PE=4 SV=1 CANONICAL=A0A9J7GJH3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286098", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286098" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dpy19l3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJH8", "locus": {} } ], "crossref": [ { "id": "cd20181", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20181", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756435", "url": "https://www.ncbi.nlm.nih.gov/gene/100756435", "database": "GeneID", "categories": [ "Genome 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288923" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GJM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769886", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GJM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GJM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769886", "url": "https://www.ncbi.nlm.nih.gov/gene/100769886", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7GK57/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_027288172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288172" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GK57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK57" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767876", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK57", "locus": {} } ], "crossref": [ { "id": "100767876", "url": "https://www.ncbi.nlm.nih.gov/gene/100767876", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100767876", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767876", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GK57", "url": "https://www.orthodb.org/?gene=A0A9J7GK57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027288172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288172", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GK57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LIFRYANGKKRIFNLTGVLSNLSAWVCEIVIANSQNWRLWEFDNAVVQFVSFGLWEAHYPQEFNVSGTAIKMLVHTPIDSTWIISAEFHYAXNLIIWAMLMKSAVLGFSMLAIMISFMRDPFIEMQIYCYKVSALVLCVSSLFTFVSVSWNYMVDLYGQTTFDFPPDFPVKKEAMISKHFIAIFPLGVLTSTMSLFGMTMFFSEVSCLKLQNQVKAQRAYIVVNKEA", "length": 227, "header": "tr|A0A9J7GK57-1|A0A9J7GK57_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC100767876 OS=Cricetulus griseus OX=10029 GN=LOC100767876 PE=4 SV=1 CANONICAL=A0A9J7GK57-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GK57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK57/entry#A0A9J7GK57-1", "sequence": { "sequence": "LIFRYANGKKRIFNLTGVLSNLSAWVCEIVIANSQNWRLWEFDNAVVQFVSFGLWEAHYPQEFNVSGTAIKMLVHTPIDSTWIISAEFHYAXNLIIWAMLMKSAVLGFSMLAIMISFMRDPFIEMQIYCYKVSALVLCVSSLFTFVSVSWNYMVDLYGQTTFDFPPDFPVKKEAMISKHFIAIFPLGVLTSTMSLFGMTMFFSEVSCLKLQNQVKAQRAYIVVNKEA", "length": 227, "header": "tr|A0A9J7GK57-1|A0A9J7GK57_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC100767876 OS=Cricetulus griseus OX=10029 GN=LOC100767876 PE=4 SV=1 CANONICAL=A0A9J7GK57-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1771, "header": "tr|A0A9J7GKB1-1|A0A9J7GKB1_CRIGR Isoform 1 of FERM and PDZ domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Frmpd3 PE=4 SV=1 CANONICAL=A0A9J7GKB1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 978, "start_aa": "Thr", "end_pos": 978, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr978", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKB1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760412", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760412", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1703, "end_pos": 1705, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 775, "end_pos": 777, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 890, "end_pos": 892, "annotation": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GKB7-1", "uniprot_ac": "A0A9J7GKB7", "uniprot_id": "A0A9J7GKB7_CRIGR", "mass": { "chemical_mass": 16671.0, "monoisotopic_mass": 16671.0 }, "refseq": { "ac": "XP_027289125", "name": "glyoxalase domain-containing protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289125" }, "gene_names": [ { "name": "Glod5", "type": "recommended", "evidence": [ { "id": "A0A9J7GKB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKB7" } ] }, { "name": "Glod5", "type": "synonym", "evidence": [ { "id": "XP_027289125", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289125" } ] } ], "protein_names": [ { "name": "Glyoxalase domain-containing protein 5", "type": "recommended", "evidence": [ { "id": "A0A9J7GKB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKB7/entry#names_and_taxonomy" } ] }, { "name": "glyoxalase domain-containing protein 5", "type": "synonym", "evidence": [ { "id": "XP_027289125", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289125" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289249", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289249" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKH0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765166", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKH0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765166", "url": "https://www.ncbi.nlm.nih.gov/gene/100765166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765166", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKH0", "url": "https://www.orthodb.org/?gene=A0A9J7GKH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24329", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24329", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24329:SF566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24329:SF566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289249", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289249", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALQSHHVGSNFCKLEENEIEVSLDFDDDTETAKSGTFGKVSLNSSDKPKNQGTLDCKDDVSYPSVSNYVPDNIKNESHGSHQGSAQPQLEEQENMAAARVPKLRRRRPRIQFGLTPRQLSELEDVFEKTKYPDEIIRKDLARRLFLGESKVRSWFKRRRAKYRKYQQSLMLQKEAADGQNT", "length": 182, "header": "tr|A0A9J7GKH0-1|A0A9J7GKH0_CRIGR Isoform 1 of Paired mesoderm homeobox protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100765166 PE=4 SV=1 CANONICAL=A0A9J7GKH0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKH0/entry#A0A9J7GKH0-1", "sequence": { "sequence": "MALQSHHVGSNFCKLEENEIEVSLDFDDDTETAKSGTFGKVSLNSSDKPKNQGTLDCKDDVSYPSVSNYVPDNIKNESHGSHQGSAQPQLEEQENMAAARVPKLRRRRPRIQFGLTPRQLSELEDVFEKTKYPDEIIRKDLARRLFLGESKVRSWFKRRRAKYRKYQQSLMLQKEAADGQNT", "length": 182, "header": "tr|A0A9J7GKH0-1|A0A9J7GKH0_CRIGR Isoform 1 of Paired mesoderm homeobox protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100765166 PE=4 SV=1 CANONICAL=A0A9J7GKH0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GKI4-1", "uniprot_ac": "A0A9J7GKI4", "uniprot_id": "A0A9J7GKI4_CRIGR", "mass": { "chemical_mass": 46415.0, "monoisotopic_mass": 46415.0 }, "refseq": { "ac": "XP_027289596", "name": "zinc finger and SCAN domain containing protein 4D-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289596" }, "gene_names": [ { "name": "LOC113837987", "type": "recommended", "evidence": [ { "id": "A0A9J7GKI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4" } ] }, { "name": "LOC113837987", "type": "synonym", "evidence": [ { "id": "XP_027289596", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289596" } ] } ], "protein_names": [ { "name": "Zinc finger and SCAN domain containing protein 4D-like", "type": "synonym", "evidence": [ { "id": "A0A9J7GKI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and SCAN domain containing protein 4D-like", "type": "synonym", "evidence": [ { "id": "XP_027289596", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289596" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289596" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837987", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837987", "url": "https://www.ncbi.nlm.nih.gov/gene/113837987", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837987", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837987", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKI4", "url": "https://www.orthodb.org/?gene=A0A9J7GKI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF88", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF88", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289596", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKPTETANLNKGEVWSPDCYLGNQHGSDTEPMNEGVHVSMQGQEALFPENMSLKEVIKLLKEQQSLIAATQQNVGTPLQLPQDALLVTGYKNSEDGENAFLKGREVNSGVSSPGNGMDSLLFTETGQYAESEHGGVSYGAPLDLSRAGQGTSRYQAESPRSPSYEHIPMEVQPVYLSWTSQSEDTADGHNIVLNTANVNGCISNLKTERDSLLFIQREQDSEPKEGGDFYGLLCDSGRAIWGTSSSQELSLTSHSYEHIPIKVPGFLSRPEQTTCEPVPLWQSQEANSICEGHQERPHRCLKQYKCEECPRAFKYPCNLSVHQKRHKVERSFFCINGETGFYQGSDIRDPETVSKPEKPFICSTCGRSFSHKTNLQAHERIHTGEKPYTCSVCNSRFRQSSTYHRHLRNYHKSD", "length": 415, "header": "tr|A0A9J7GKI4-1|A0A9J7GKI4_CRIGR Isoform 1 of Zinc finger and SCAN domain containing protein 4D-like OS=Cricetulus griseus OX=10029 GN=LOC113837987 PE=3 SV=1 CANONICAL=A0A9J7GKI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKI4/entry#A0A9J7GKI4-1", "sequence": { "sequence": "MVKPTETANLNKGEVWSPDCYLGNQHGSDTEPMNEGVHVSMQGQEALFPENMSLKEVIKLLKEQQSLIAATQQNVGTPLQLPQDALLVTGYKNSEDGENAFLKGREVNSGVSSPGNGMDSLLFTETGQYAESEHGGVSYGAPLDLSRAGQGTSRYQAESPRSPSYEHIPMEVQPVYLSWTSQSEDTADGHNIVLNTANVNGCISNLKTERDSLLFIQREQDSEPKEGGDFYGLLCDSGRAIWGTSSSQELSLTSHSYEHIPIKVPGFLSRPEQTTCEPVPLWQSQEANSICEGHQERPHRCLKQYKCEECPRAFKYPCNLSVHQKRHKVERSFFCINGETGFYQGSDIRDPETVSKPEKPFICSTCGRSFSHKTNLQAHERIHTGEKPYTCSVCNSRFRQSSTYHRHLRNYHKSD", "length": 415, "header": "tr|A0A9J7GKI4-1|A0A9J7GKI4_CRIGR Isoform 1 of Zinc finger and SCAN domain containing protein 4D-like OS=Cricetulus griseus OX=10029 GN=LOC113837987 PE=3 SV=1 CANONICAL=A0A9J7GKI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027285631.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285631" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem52b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773055", "url": "https://www.ncbi.nlm.nih.gov/gene/100773055", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773055", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773055", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKJ7", "url": "https://www.orthodb.org/?gene=A0A9J7GKJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33955:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33955:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285631", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGELSGSFGIPQSCRLAVINDPEQAGLIINTVFSLMAARSRVVMASVLVYFIQLPGAGCQENCVNAEHCLSTDWVHLWYIWLLVVVGALLLLCGLTSVCFRCCLSRPENGEDGAPPPYEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHAHSSLGQLPSSLDTLPGYEEALGMSRFTVARCGQKAPELPSVPEETQLPPTGKGSPQTELPSH", "length": 217, "header": "tr|A0A9J7GKJ7-1|A0A9J7GKJ7_CRIGR Isoform 1 of Transmembrane protein 52B OS=Cricetulus griseus OX=10029 GN=Tmem52b PE=4 SV=1 CANONICAL=A0A9J7GKJ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7/entry#A0A9J7GKJ7-1", "sequence": { "sequence": "MGELSGSFGIPQSCRLAVINDPEQAGLIINTVFSLMAARSRVVMASVLVYFIQLPGAGCQENCVNAEHCLSTDWVHLWYIWLLVVVGALLLLCGLTSVCFRCCLSRPENGEDGAPPPYEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHAHSSLGQLPSSLDTLPGYEEALGMSRFTVARCGQKAPELPSVPEETQLPPTGKGSPQTELPSH", "length": 217, "header": "tr|A0A9J7GKJ7-1|A0A9J7GKJ7_CRIGR Isoform 1 of Transmembrane protein 52B OS=Cricetulus griseus OX=10029 GN=Tmem52b PE=4 SV=1 CANONICAL=A0A9J7GKJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKJ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GKK6-1", "uniprot_ac": "A0A9J7GKK6", "uniprot_id": "A0A9J7GKK6_CRIGR", "mass": { "chemical_mass": 23390.0, "monoisotopic_mass": 23390.0 }, "refseq": { "ac": "XP_027286974", "name": "uncharacterized protein C19orf18 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286974" }, "gene_names": [ { "name": "CUNH19orf18", "type": "recommended", "evidence": [ { "id": "A0A9J7GKK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6" } ] }, { "name": "CUNH19orf18", "type": "synonym", "evidence": [ { "id": "XP_027286974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286974" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C19orf18 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7GKK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C19orf18 homolog", "type": "synonym", "evidence": [ { "id": "XP_027286974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286974" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 17% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH19orf18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768742", "url": "https://www.ncbi.nlm.nih.gov/gene/100768742", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768742", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768742", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKK6", "url": "https://www.orthodb.org/?gene=A0A9J7GKK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR38000", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38000", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38000:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38000:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKVQSSTFLFWFLLECLPHVCLPYPDNIRLTWKTANLPGSRQFDTTQAPMEQSRGLLSVTSQQSTAIPRRPGLVHVISVASISFVIALISGLTLSYVIYRLVKAEEKQQLALLYENVEIPILQEKEASEEEGQDESSEPHSENEDLGKFIGSVIRTKRRENILKKKKNEEQNILENTPESSDYTEQVESHDKMEDENGETKLHE", "length": 205, "header": "tr|A0A9J7GKK6-1|A0A9J7GKK6_CRIGR Isoform 1 of Uncharacterized protein C19orf18 homolog OS=Cricetulus griseus OX=10029 GN=CUNH19orf18 PE=4 SV=1 CANONICAL=A0A9J7GKK6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6/entry#A0A9J7GKK6-1", "sequence": { "sequence": "MDKVQSSTFLFWFLLECLPHVCLPYPDNIRLTWKTANLPGSRQFDTTQAPMEQSRGLLSVTSQQSTAIPRRPGLVHVISVASISFVIALISGLTLSYVIYRLVKAEEKQQLALLYENVEIPILQEKEASEEEGQDESSEPHSENEDLGKFIGSVIRTKRRENILKKKKNEEQNILENTPESSDYTEQVESHDKMEDENGETKLHE", "length": 205, "header": "tr|A0A9J7GKK6-1|A0A9J7GKK6_CRIGR Isoform 1 of Uncharacterized protein C19orf18 homolog OS=Cricetulus griseus OX=10029 GN=CUNH19orf18 PE=4 SV=1 CANONICAL=A0A9J7GKK6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768742", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768742", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GKK9-1", "uniprot_ac": "A0A9J7GKK9", "uniprot_id": "A0A9J7GKK9_CRIGR", "mass": { "chemical_mass": 32449.0, "monoisotopic_mass": 32449.0 }, "refseq": { "ac": "XP_027288528", "name": "claudin-34-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288528" }, "gene_names": [ { "name": "LOC100754933", "type": "recommended", "evidence": [ { "id": "A0A9J7GKK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK9" } ] }, { "name": "LOC100754933", "type": "synonym", "evidence": [ { "id": "XP_027288528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288528" } ] } ], "protein_names": [ { "name": "Claudin-34-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GKK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKK9/entry#names_and_taxonomy" } ] }, { "name": "claudin-34-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027288528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288528" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 26% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288528.1. 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"name": "Serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GKL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027284778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284778" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284778" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp4r2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKL7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758228", "url": "https://www.ncbi.nlm.nih.gov/gene/100758228", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758228", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758228", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKL7", "url": "https://www.orthodb.org/?gene=A0A9J7GKL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16487:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16487:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284778", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETMIQWSQFKGYFIFKLEKVMDDFRTSAPEPRGPPNPNVEYIPFDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDKFLRGVEKNVMVVSCVCPSSEKNNSSNSLNRMNGVMFPGNSPNYTDRSNINGPGTPRPLNRPKLSLSAPLTTNGLPESTDSKESDLQPSEEKAHSDSPASEPEVSSLSPVKNKHPDEDTVEAEGHEVKRLRFDIEDEDQETVSHTVSSEGSAGTEEAEAASSPPEKDRESQSRQHCTDEEEEEDEEEEEEEEEEESFMTPREMVSEKKNQEKESDDALAVNEEPSEEGTHMEDSDGSPAQRDPHSERSDIAGAVSSGSDCPETEEPGGTTSRKTGESVSVSSMENDETTEMTDEPMEQDLTT", "length": 421, "header": "tr|A0A9J7GKL7-1|A0A9J7GKL7_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ppp4r2 PE=3 SV=1 CANONICAL=A0A9J7GKL7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKL7/entry#A0A9J7GKL7-1", "sequence": { "sequence": "MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETMIQWSQFKGYFIFKLEKVMDDFRTSAPEPRGPPNPNVEYIPFDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDKFLRGVEKNVMVVSCVCPSSEKNNSSNSLNRMNGVMFPGNSPNYTDRSNINGPGTPRPLNRPKLSLSAPLTTNGLPESTDSKESDLQPSEEKAHSDSPASEPEVSSLSPVKNKHPDEDTVEAEGHEVKRLRFDIEDEDQETVSHTVSSEGSAGTEEAEAASSPPEKDRESQSRQHCTDEEEEEDEEEEEEEEEEESFMTPREMVSEKKNQEKESDDALAVNEEPSEEGTHMEDSDGSPAQRDPHSERSDIAGAVSSGSDCPETEEPGGTTSRKTGESVSVSSMENDETTEMTDEPMEQDLTT", "length": 421, "header": "tr|A0A9J7GKL7-1|A0A9J7GKL7_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ppp4r2 PE=3 SV=1 CANONICAL=A0A9J7GKL7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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