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"kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFS9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFS9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr248" }, { "start_pos": 252, "end_pos": 252, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFS9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFS9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser252" }, { "start_pos": 256, "end_pos": 256, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFS9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFS9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser256" } ], "glycation": [], "keywords": [], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FFS9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFS9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFS9", "url": "https://www.uniprot.org/uniprotkb/Q9FFS9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Sato S, Kotani H, Nakamura Y, Kaneko T, Asamizu E, Fukami M, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FFS9", "url": "https://www.uniprot.org/uniprotkb/Q9FFS9" } ], "reference": [ { "type": "PubMed", "id": "9330910", "url": "https://glygen.org/publication/PubMed/9330910" } ] } ], "pathway": [ { "id": "ath:AT5G41510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FFS9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 400, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FFS9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FFS9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FFS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFS9" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 2, "end_pos": 47, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 248, 252, 256 ], "sequon_annotation_sites": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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}, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FFT0-1", "uniprot_ac": "Q9FFT0", "uniprot_id": "FB277_ARATH", "mass": { "chemical_mass": 47129.0, "monoisotopic_mass": 47129.0 }, "refseq": {}, "gene_names": [ { "name": "MPK23.3", "type": "synonym", "evidence": [ { "id": "Q9FFT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFT0" } ] } ], "protein_names": [ { "name": "Putative F-box protein At5g41500", "type": "recommended", "evidence": [ { "id": "Q9FFT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFT0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { 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"https://www.ebi.ac.uk/intact/interactors/id:Q9FFT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G41500", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEIWITT", "url": "https://omabrowser.org/oma/group/HEIWITT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FFT0", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FFT0", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G41500", "url": 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"https://www.ensemblgenomes.org/id/AT5G41500.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FFT0", "url": "https://www.uniprot.org/uniprotkb/Q9FFT0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FFY4", "url": "https://www.uniprot.org/uniprotkb/Q9FFY4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q9FFY4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFY4" } ], "reference": [ { "type": "PubMed", "id": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45669:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45669:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23733", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23733", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_196885", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196885", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G13810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G13810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FFZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FFZ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLEKNADFSGKTTKSATTTSFFNRSLTIHGRTVVDSGPKSHNLNPSLNRTTSITKFYTPVESMGTSLKGKVKNLCRLFETSKPVKPALAEIPQKQKSGKSLLPESRISPFSSLNNSVIRLPGTEDRIVVYFTSLRGIRRTYEDCYAVRMIFRGFRVWIDERDVSMDIAYRKELQIAMGEKSVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGFVCHCCGDIRFVPCSNCSGSKKLFDEDEDRVKRCPECNENGLIRCPDCSS", "length": 274, "header": "tr|Q9FFZ0-1|Q9FFZ0_ARATH Isoform 1 of Glutaredoxin family protein OS=Arabidopsis thaliana OX=3702 GN=MAC12.24 PE=1 SV=1 CANONICAL=Q9FFZ0-1" }, "isoforms": [ { "isoform_ac": "Q9FFZ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FFZ0/entry#Q9FFZ0-1", "sequence": { "sequence": "MAGLEKNADFSGKTTKSATTTSFFNRSLTIHGRTVVDSGPKSHNLNPSLNRTTSITKFYTPVESMGTSLKGKVKNLCRLFETSKPVKPALAEIPQKQKSGKSLLPESRISPFSSLNNSVIRLPGTEDRIVVYFTSLRGIRRTYEDCYAVRMIFRGFRVWIDERDVSMDIAYRKELQIAMGEKSVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGFVCHCCGDIRFVPCSNCSGSKKLFDEDEDRVKRCPECNENGLIRCPDCSS", "length": 274, "header": "tr|Q9FFZ0-1|Q9FFZ0_ARATH Isoform 1 of Glutaredoxin family protein OS=Arabidopsis thaliana OX=3702 GN=MAC12.24 PE=1 SV=1 CANONICAL=Q9FFZ0-1" }, "locus": { "chromosome": "5", "start_pos": 4455148, "end_pos": 4457019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13810.1", "url": "https://www.ensemblgenomes.org/id/AT5G13810.1" }, { "database": "Ensembl Peptide", "id": "AT5G13810.1", "url": "https://www.ensemblgenomes.org/id/AT5G13810.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG18-1", "uniprot_ac": "Q9FG18", "uniprot_id": "Q9FG18_ARATH", "mass": { "chemical_mass": 76697.0, "monoisotopic_mass": 76697.0 }, "refseq": {}, "gene_names": [ { "name": "F15M7.5", "type": "synonym", "evidence": [ { "id": "Q9FG18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG18" } ] }, { "name": "F15M7_5", "type": "synonym", "evidence": [ { "id": "Q9FG18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG18" } ] } ], "protein_names": [ { "name": "SWAP (Suppressor-of-White-APricot)/surp domain-containing protein", "type": "synonym", "evidence": [ { "id": "Q9FG18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG18", "url": "https://www.uniprot.org/uniprotkb/Q9FG18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FG18", "locus": {} } ], "crossref": [ { "id": "AT5G06520", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G06520", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830540", "url": "https://www.ncbi.nlm.nih.gov/gene/830540", "database": "GeneID", 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"MYTSMHKDLRSRQNNSNQVGADSESTRLVNIRNLAKIVNDSRFRSLSPDTPATHDAQDYLWPPSLDMPLLAPPVNFSHLPLGITFTRKELELIKLTAQFVAVYGKYFQRELTTRVVESPLFEFLKPTDSRNSFYTRIILGYQGVLMPSQKLKTKSEVFDGFSKLIAQVPVKDEDDVEMAMTDLHAYEYFANMSINDLRAPAPVKFAFLTRGVTFTRNELDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCSFYLRLVDGYSRVLRRSRKNGAGLGEVVVGFLKLLDQVVEKKDAVEMALTDLHALEFFANVDGGVLQPRPEQYHPMMPTVPPLIMPQLGSQFTQLQVPQPSCSPPVRMMSPPRPQNDLQSGQSNSNKAPASVAPIEPPPEIRSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLKLAEYRAQNQDRAHDIQPNVLRSFGFGFEFPEKEITLKELGIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAYSRVLMPSKMLSKSDDCTATVVDGFLSCLQLEKREEGVDIDMIDLLDCFARLEDADYSANVPQPQHLSTQMQPPHTPETSPPLPLPLKNESSPVLADQHPDSSTIDDEWQVIDFTGQSLPDNVASLKDKTAGGIQIPANK", "length": 679, "header": "tr|Q9FG18-1|Q9FG18_ARATH Isoform 1 of SWAP (Suppressor-of-White-APricot)/surp domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG18-1" }, "isoforms": [ { "isoform_ac": "Q9FG18-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG18/entry#Q9FG18-1", 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"Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG28", "url": "https://www.uniprot.org/uniprotkb/Q9FG28" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG28", "url": "https://www.uniprot.org/uniprotkb/Q9FG28" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06790", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 } ] }, "class_list": 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG42-1", "uniprot_ac": "Q9FG42", "uniprot_id": "Q9FG42_ARATH", "mass": { "chemical_mass": 72266.0, "monoisotopic_mass": 72266.0 }, "refseq": {}, "gene_names": [ { "name": "T25O11.12", "type": "synonym", "evidence": [ { "id": "Q9FG42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG42" } ] }, { "name": "T25O11_12", "type": "synonym", "evidence": [ { "id": "Q9FG42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG42" } ] } ], "protein_names": [ { "name": "DUF577 domain-containing protein", "type": "recommended", "evidence": [ { "id": "Q9FG42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG42/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG42", "url": "https://www.uniprot.org/uniprotkb/Q9FG42" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FG42", "locus": {} } ], "crossref": [ { "id": "AT5G37460", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37460", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833723", "url": "https://www.ncbi.nlm.nih.gov/gene/833723", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DNDHIAG", "url": "https://omabrowser.org/oma/group/DNDHIAG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G37460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG42", "url": "https://www.uniprot.org/uniprotkb/Q9FG42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG42-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESLNRKARDLLATPSHEGAEILVKQLSLPQETNEFQTAEDLFNFCANNFPNCLTLMFLKLYRHSSNDVIRFHSLYLLSETLAVFRNCNIKLSRVALHEIKPLVIECLTMQETKESDMKFLGRVVSLITYNVVICDNGGWHELSDCILWLAENEPVKAFHVFIDLPSVYKSFINKFMKVIVEKAEKVLLNPVKSEVEDWSLALETVVKLGIQISYKDMRYVKMVENLLSILAKSVKELVEKGNEQFLVQGLEHLERFLSEDKYLCNYNKEQCHFVMAFMFRIKSFGTQSKEIIKKINWLVQTPGNRAGKHSSLKINPLVQTPGNQDHGEEFDRAWLDHLKTLSSLEVLKIFASTDLEDETREMAIRQLNVLLSDHTSKRVEIDFSVMRQLQPLLISCLRQEGITDSMFKVLGEVVSHVAFEIFKHQDVTWYALRNYITSSKIEFQRAVYIFQCLTMPLENEEFLIPVIEILLPEISRRLNPPTELMVDNSCWVLAFTGAFCAAIHLIEVSSHAESVKEIAHKMIESVRKLVERGMEVGLVRRAFRDVGSIVKKQLRWYDTSEYKLVKGLLWRLYAIKGMKWESKIVLWRINVIVERRVDEMVKELPENEFDWLNLTDEEVE", "length": 622, "header": "tr|Q9FG42-1|Q9FG42_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG42-1" }, "isoforms": [ { "isoform_ac": "Q9FG42-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG42/entry#Q9FG42-1", "sequence": { "sequence": "MEESLNRKARDLLATPSHEGAEILVKQLSLPQETNEFQTAEDLFNFCANNFPNCLTLMFLKLYRHSSNDVIRFHSLYLLSETLAVFRNCNIKLSRVALHEIKPLVIECLTMQETKESDMKFLGRVVSLITYNVVICDNGGWHELSDCILWLAENEPVKAFHVFIDLPSVYKSFINKFMKVIVEKAEKVLLNPVKSEVEDWSLALETVVKLGIQISYKDMRYVKMVENLLSILAKSVKELVEKGNEQFLVQGLEHLERFLSEDKYLCNYNKEQCHFVMAFMFRIKSFGTQSKEIIKKINWLVQTPGNRAGKHSSLKINPLVQTPGNQDHGEEFDRAWLDHLKTLSSLEVLKIFASTDLEDETREMAIRQLNVLLSDHTSKRVEIDFSVMRQLQPLLISCLRQEGITDSMFKVLGEVVSHVAFEIFKHQDVTWYALRNYITSSKIEFQRAVYIFQCLTMPLENEEFLIPVIEILLPEISRRLNPPTELMVDNSCWVLAFTGAFCAAIHLIEVSSHAESVKEIAHKMIESVRKLVERGMEVGLVRRAFRDVGSIVKKQLRWYDTSEYKLVKGLLWRLYAIKGMKWESKIVLWRINVIVERRVDEMVKELPENEFDWLNLTDEEVE", "length": 622, "header": "tr|Q9FG42-1|Q9FG42_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG42-1" }, "locus": { "chromosome": "5", "start_pos": 14858473, "end_pos": 14860362, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37460.1", "url": "https://www.ensemblgenomes.org/id/AT5G37460.1" }, { "database": "Ensembl Peptide", "id": "AT5G37460.1", "url": "https://www.ensemblgenomes.org/id/AT5G37460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, 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"evidence": [ { "database": "UniProtKB", "id": "Q9FG42", "url": "https://www.uniprot.org/uniprotkb/Q9FG42" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG42", "url": "https://www.uniprot.org/uniprotkb/Q9FG42" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 615, "end_pos": 617, "annotation": 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"id": "Q9FG44", "url": "https://www.uniprot.org/uniprotkb/Q9FG44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FG44", "locus": {} } ], "crossref": [ { "id": "AT5G37440", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37440", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "833720", "url": "https://www.ncbi.nlm.nih.gov/gene/833720", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056988", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056988", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CYMQYEY", "url": "https://omabrowser.org/oma/group/CYMQYEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR44137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44137:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44137:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23551", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23551", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G37440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG44", "url": "https://www.uniprot.org/uniprotkb/Q9FG44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG44-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSFVTVENKPLPTDMEFTMEEATKIVERKLSEKDYVGAKNFINNAFNLFPSLDARWKTMIDVYISGSNVGESDWYGVLGVDPLSDDETVKKHYKQLALLLHPDKNKCYGAEGAFKLVSEAWCLLSDKLQRSSYDQRRKKSKQGKSSKPKAADSSKQRKSRTFWTMCRSCKTKGEFLRHWNLNKAILCPNCRQIFIATEITTKEPNKSTKKSSHQQQQWSVQDKVPIKSTKNASSSPSVTFTWNCSSTKARSNCGSAANQKLKRGFESQETVAPAEKIIKKARTYVS", "length": 287, "header": "tr|Q9FG44-1|Q9FG44_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG44-1" }, "isoforms": [ { "isoform_ac": "Q9FG44-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG44/entry#Q9FG44-1", "sequence": { "sequence": "MDSFVTVENKPLPTDMEFTMEEATKIVERKLSEKDYVGAKNFINNAFNLFPSLDARWKTMIDVYISGSNVGESDWYGVLGVDPLSDDETVKKHYKQLALLLHPDKNKCYGAEGAFKLVSEAWCLLSDKLQRSSYDQRRKKSKQGKSSKPKAADSSKQRKSRTFWTMCRSCKTKGEFLRHWNLNKAILCPNCRQIFIATEITTKEPNKSTKKSSHQQQQWSVQDKVPIKSTKNASSSPSVTFTWNCSSTKARSNCGSAANQKLKRGFESQETVAPAEKIIKKARTYVS", "length": 287, "header": "tr|Q9FG44-1|Q9FG44_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG44-1" }, "locus": { "chromosome": "5", "start_pos": 14844334, "end_pos": 14845685, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37440.1", "url": "https://www.ensemblgenomes.org/id/AT5G37440.1" }, { "database": "Ensembl Peptide", "id": "AT5G37440.1", "url": "https://www.ensemblgenomes.org/id/AT5G37440.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG44", "url": "https://www.uniprot.org/uniprotkb/Q9FG44" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG44", "url": "https://www.uniprot.org/uniprotkb/Q9FG44" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FG44", "url": "https://www.uniprot.org/uniprotkb/Q9FG44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 }, { "start_pos": 232, "end_pos": 234 }, { "start_pos": 244, "end_pos": 246 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G37430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG45", "url": "https://www.uniprot.org/uniprotkb/Q9FG45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG45-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESMNIQLKGREILVSESHEELAMIVDHLFKSDEDSEEYKTSQALYNYCVSFNPGCLAVKLLKLYQSSSDGVLRFRSIYQLSETLTGLRNRKLSLDCLYEIKTLLIACLTMQETKECDIKILRRIVSCVAYNVMDLHKYKWDELGDCILSLVNSNDPVKGFHVFIDLPQVYEEFIQKFMKIMFKKATDVLVNPEESGVEDWSLALQIVVKLGIQFFDTRMKRNVIKKLMSFQLLNILESAKKLVDMGNETFLVRVLRDFERFVSRDMNLYKYSELHCYFVSKFVSKIGKVRGVGTQTKELVTKINMLFTKQYHGKESLRGWYDHLKSLSLLEVLKIFASTDLEDRARDMAIRQLNVLLSDHTSKRVEIEIAEMRQLQPLLMSCLKEQGVSYSMFKVLGEVVNHVAYEMLVCQEKRWDDLRDYVASQSETEFQRAVYVFQCLTMQLIDDGFLDPEIAHKMIDSIRELVEREMEVGIVRRAFRDVETIVKKQLEWYSTSQYRFVKGLLWRLYAIKGMKWGSKMVLWRINFIVERGVKEEEKQLPETEFDWLNLHDDDGDDGDDDDGDDDDDDGDDDGDDDDDDGDDGDDDDDDDGDDGDDDDDDDDGG", "length": 607, "header": "tr|Q9FG45-1|Q9FG45_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG45-1" }, "isoforms": [ { "isoform_ac": "Q9FG45-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG45/entry#Q9FG45-1", "sequence": { "sequence": "MEESMNIQLKGREILVSESHEELAMIVDHLFKSDEDSEEYKTSQALYNYCVSFNPGCLAVKLLKLYQSSSDGVLRFRSIYQLSETLTGLRNRKLSLDCLYEIKTLLIACLTMQETKECDIKILRRIVSCVAYNVMDLHKYKWDELGDCILSLVNSNDPVKGFHVFIDLPQVYEEFIQKFMKIMFKKATDVLVNPEESGVEDWSLALQIVVKLGIQFFDTRMKRNVIKKLMSFQLLNILESAKKLVDMGNETFLVRVLRDFERFVSRDMNLYKYSELHCYFVSKFVSKIGKVRGVGTQTKELVTKINMLFTKQYHGKESLRGWYDHLKSLSLLEVLKIFASTDLEDRARDMAIRQLNVLLSDHTSKRVEIEIAEMRQLQPLLMSCLKEQGVSYSMFKVLGEVVNHVAYEMLVCQEKRWDDLRDYVASQSETEFQRAVYVFQCLTMQLIDDGFLDPEIAHKMIDSIRELVEREMEVGIVRRAFRDVETIVKKQLEWYSTSQYRFVKGLLWRLYAIKGMKWGSKMVLWRINFIVERGVKEEEKQLPETEFDWLNLHDDDGDDGDDDDGDDDDDDGDDDGDDDDDDGDDGDDDDDDDGDDGDDDDDDDDGG", "length": 607, "header": "tr|Q9FG45-1|Q9FG45_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG45-1" }, "locus": { "chromosome": "5", "start_pos": 14842430, "end_pos": 14844308, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37430.1", "url": "https://www.ensemblgenomes.org/id/AT5G37430.1" }, { "database": "Ensembl Peptide", "id": "AT5G37430.1", "url": "https://www.ensemblgenomes.org/id/AT5G37430.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 240, "end_pos": 240, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FG45", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG45" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser240" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG45", "url": "https://www.uniprot.org/uniprotkb/Q9FG45" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FG45", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG45" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG45", "url": "https://www.uniprot.org/uniprotkb/Q9FG45" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FG45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG45" }, { "id": "PF04510", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF577", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 274, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 240 ], "sequon_annotation_sites": [ { "start_pos": 249, "end_pos": 251 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG46-1", "uniprot_ac": "Q9FG46", "uniprot_id": "Q9FG46_ARATH", "mass": { "chemical_mass": 67470.0, "monoisotopic_mass": 67470.0 }, "refseq": { "ac": "NP_198558", "name": "hypothetical protein (DUF577)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" }, "gene_names": [ { "name": "AGAMOUS-like 105", "type": "recommended", "evidence": [ { "id": "Q9FG46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ] }, { "name": "AGAMOUS-like 105", "type": "synonym", "evidence": [ { "id": "NP_198558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" } ] }, { "name": "AGL105", "type": "synonym", "evidence": [ { "id": "NP_198558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" }, { "id": "Q9FG46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ] }, { "name": "T25O11.7", "type": "synonym", "evidence": [ { "id": "NP_198558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" }, { "id": "Q9FG46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ] }, { "name": "T25O11_7", "type": "synonym", "evidence": [ { "id": "NP_198558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" }, { "id": "Q9FG46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ] } ], "protein_names": [ { "name": "DUF577 domain-containing protein", "type": "recommended", "evidence": [ { "id": "Q9FG46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG46/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF577)", "type": "synonym", "evidence": [ { "id": "NP_198558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG46", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "AGAMOUS-like 105", "url": "https://www.uniprot.org/uniprotkb/Q9FG46", "locus": {} } ], "crossref": [ { "id": "AT5G37420", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37420", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833718", "url": "https://www.ncbi.nlm.nih.gov/gene/833718", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G37420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YIASQCK", "url": "https://omabrowser.org/oma/group/YIASQCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198558", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198558", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G37420", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G37420", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG46", "url": "https://www.uniprot.org/uniprotkb/Q9FG46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG46-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESSSNLPSKAREILVNPTNEEIAMTLNQLFMRQDSQQYQRSRILYNIWVSHNPSSLTLKLLMVYQSSSSNSVLRFRSIYQLSQTLTDVKFKPSLDSLFEIKGVLIPCLTMKDTKESDFKILRKIVSWVAYNVVVLHKSKFHELSDCIILLAEREPVKAFHVFIDLPPVYNEFIDKLLETILQRAESVLLSPVRAEDWSLAFQTFVKMWIQLVYTKMEAKKVMELMVARLSTVVKSVIELVNKEEEEFLVQGLEDFERFFSREMSLYHYTNDQCHFVLASMIEMEGVVRGTEAKEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSREIAIRRVNVLLSDHFSKKARIGISEFRKLKPLLISCLKEGGISDSMFKVLVISTRLEPPTVLLVDNSCWVLAFTGAFCAVIHLIDDPDYAESLKEIAYKMIDSVRKLVEREMEVGLVRRAFRDVETIVKKQLEWYGKLEYKLVKGLLWRLYAIKGMKWESKFVLWRINVIVERGVHKIMLKELPKDDEFDWLNIHDDDGDDDDDDDDDDDDDDDDGDGDGDGDDEE", "length": 579, "header": "tr|Q9FG46-1|Q9FG46_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AGAMOUS-like 105 PE=1 SV=1 CANONICAL=Q9FG46-1" }, "isoforms": [ { "isoform_ac": "Q9FG46-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG46/entry#Q9FG46-1", "sequence": { "sequence": "MEESSSNLPSKAREILVNPTNEEIAMTLNQLFMRQDSQQYQRSRILYNIWVSHNPSSLTLKLLMVYQSSSSNSVLRFRSIYQLSQTLTDVKFKPSLDSLFEIKGVLIPCLTMKDTKESDFKILRKIVSWVAYNVVVLHKSKFHELSDCIILLAEREPVKAFHVFIDLPPVYNEFIDKLLETILQRAESVLLSPVRAEDWSLAFQTFVKMWIQLVYTKMEAKKVMELMVARLSTVVKSVIELVNKEEEEFLVQGLEDFERFFSREMSLYHYTNDQCHFVLASMIEMEGVVRGTEAKEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSREIAIRRVNVLLSDHFSKKARIGISEFRKLKPLLISCLKEGGISDSMFKVLVISTRLEPPTVLLVDNSCWVLAFTGAFCAVIHLIDDPDYAESLKEIAYKMIDSVRKLVEREMEVGLVRRAFRDVETIVKKQLEWYGKLEYKLVKGLLWRLYAIKGMKWESKFVLWRINVIVERGVHKIMLKELPKDDEFDWLNIHDDDGDDDDDDDDDDDDDDDDGDGDGDGDDEE", "length": 579, "header": "tr|Q9FG46-1|Q9FG46_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AGAMOUS-like 105 PE=1 SV=1 CANONICAL=Q9FG46-1" }, "locus": { "chromosome": "5", "start_pos": 14840143, "end_pos": 14842070, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37420.1", "url": "https://www.ensemblgenomes.org/id/AT5G37420.1" }, { "database": "Ensembl Peptide", "id": "AT5G37420.1", "url": "https://www.ensemblgenomes.org/id/AT5G37420.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG46", "url": "https://www.uniprot.org/uniprotkb/Q9FG46" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. 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Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG54", "url": "https://www.uniprot.org/uniprotkb/Q9FG54" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, 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protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG58-1" }, "locus": { "chromosome": "5", "start_pos": 14299235, "end_pos": 14299543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36280.1", "url": "https://www.ensemblgenomes.org/id/AT5G36280.1" }, { "database": "Ensembl Peptide", "id": "AT5G36280.1", "url": "https://www.ensemblgenomes.org/id/AT5G36280.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 16, "start_aa": "Thr", "end_pos": 16, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr16", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG62-1", "uniprot_ac": "Q9FG62", "uniprot_id": "Q9FG62_ARATH", "mass": { "chemical_mass": 28598.0, "monoisotopic_mass": 28598.0 }, "refseq": {}, "gene_names": [ { "name": "T30G6.10", "type": "synonym", "evidence": [ { "id": "Q9FG62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG62" } ] }, { "name": "T30G6_10", "type": "synonym", "evidence": [ { "id": "Q9FG62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG62" } ] } ], "protein_names": [ { "name": "Zinc knuckle (CCHC-type) family protein", "type": "synonym", "evidence": [ { "id": "Q9FG62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG62/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LRTRICF", "url": "https://omabrowser.org/oma/group/LRTRICF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46978", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46978", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46978:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46978:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G36240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G36240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG62", "url": "https://www.uniprot.org/uniprotkb/Q9FG62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG62-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKLPNPISRVCDPLIMPRHNDDEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQVVSISLSTFCALSSSVLSFLSCYYSRINFLCFFQDKYGI", "length": 254, "header": "tr|Q9FG62-1|Q9FG62_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG62-1" }, "isoforms": [ { "isoform_ac": "Q9FG62-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG62/entry#Q9FG62-1", "sequence": { "sequence": "MIKLPNPISRVCDPLIMPRHNDDEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQVVSISLSTFCALSSSVLSFLSCYYSRINFLCFFQDKYGI", "length": 254, "header": "tr|Q9FG62-1|Q9FG62_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG62-1" }, "locus": { "chromosome": "5", "start_pos": 14277972, "end_pos": 14278924, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36240.1", "url": "https://www.ensemblgenomes.org/id/AT5G36240.1" }, { "database": "Ensembl Peptide", "id": "AT5G36240.1", "url": "https://www.ensemblgenomes.org/id/AT5G36240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG62", "url": "https://www.uniprot.org/uniprotkb/Q9FG62" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG62", "url": 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"https://www.ncbi.nlm.nih.gov/gene/3771323", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025558", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025558", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G36228", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36228", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IANPAIC", "url": "https://omabrowser.org/oma/group/IANPAIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31286:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31286:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14111", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14111", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14392", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14392", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001031973", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031973", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G36228", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G36228", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG64", "url": "https://www.uniprot.org/uniprotkb/Q9FG64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG64-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDELWNAIQHMDLGREEPELYIPYHAYVGALASNRLSLLGRILNPQTQSVERAILELPYQWGLGTQVHGRILDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDFLTFIDVWVHIRGIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVVHQEEMDNEPDVLVSPERYDDEDSLNQEDHGRHSQSSVISSFSSLTPISLNAPPVVNWNDNMIGNIPHRFPSTSVSSSHTVSDGYLAASEWRPKDQVSYEVGESSKRKKGKQVLEVPERSIRQRRMGSGIRFYPVNGENP", "length": 361, "header": "tr|Q9FG64-1|Q9FG64_ARATH Isoform 1 of Nucleic acid binding / zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG64-1" }, "isoforms": [ { "isoform_ac": "Q9FG64-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG64/entry#Q9FG64-1", "sequence": { "sequence": "MSDELWNAIQHMDLGREEPELYIPYHAYVGALASNRLSLLGRILNPQTQSVERAILELPYQWGLGTQVHGRILDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDFLTFIDVWVHIRGIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVVHQEEMDNEPDVLVSPERYDDEDSLNQEDHGRHSQSSVISSFSSLTPISLNAPPVVNWNDNMIGNIPHRFPSTSVSSSHTVSDGYLAASEWRPKDQVSYEVGESSKRKKGKQVLEVPERSIRQRRMGSGIRFYPVNGENP", "length": 361, "header": "tr|Q9FG64-1|Q9FG64_ARATH Isoform 1 of Nucleic acid binding / zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FG64-1" }, "locus": { "chromosome": "5", "start_pos": 14271349, "end_pos": 14273258, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G36228.1", "url": "https://www.ensemblgenomes.org/id/AT5G36228.1" }, { "database": "Ensembl Peptide", "id": "AT5G36228.1", "url": "https://www.ensemblgenomes.org/id/AT5G36228.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG64", "url": "https://www.uniprot.org/uniprotkb/Q9FG64" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG64", "url": "https://www.uniprot.org/uniprotkb/Q9FG64" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G36228", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G36228", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FG64", "url": "https://www.uniprot.org/uniprotkb/Q9FG64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG81-1", "uniprot_ac": "Q9FG81", "uniprot_id": "Q9FG81_ARATH", "mass": { "chemical_mass": 27509.0, "monoisotopic_mass": 27509.0 }, "refseq": { "ac": "NP_199196", "name": "aluminum induced protein with YGL and LRDR motifs", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199196" }, "gene_names": [ { "name": "MQD19.19", "type": "recommended", "evidence": [ { "id": "Q9FG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG81" } ] }, { "name": "MQD19.19", "type": "synonym", "evidence": [ { "id": "NP_199196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199196" } ] }, { "name": "MQD19_19", "type": "synonym", "evidence": [ { "id": "NP_199196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199196" }, { "id": "Q9FG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG81" } ] } ], "protein_names": [ { "name": "Aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "Q9FG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG81/entry#names_and_taxonomy" } ] }, { "name": "aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "NP_199196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199196" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG81", "url": "https://www.uniprot.org/uniprotkb/Q9FG81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MQD19.19", "url": "https://www.uniprot.org/uniprotkb/Q9FG81", "locus": {} } ], "crossref": [ { "id": "cd01910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834405", "url": "https://www.ncbi.nlm.nih.gov/gene/834405", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FG81", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FG81*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR024286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G43830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GLRSHEN", "url": "https://omabrowser.org/oma/group/GLRSHEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FG81", "url": "https://www.orthodb.org/?gene=Q9FG81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199196", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199196", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G43830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G43830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG81", "url": "https://www.uniprot.org/uniprotkb/Q9FG81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG81-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLDNPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYPVDKVVRDFHGKFAFILFDSVKKTVFAAADADGSVPFFWGTDAEGHLVFSDNTEMVKKGCAKSYGPFPKGCFFTSSGGLRSFEHPKNELKPVPRVDSSGDVCGATFKVDAETKREGTKMPRVDSSQNWAGHI", "length": 251, "header": "tr|Q9FG81-1|Q9FG81_ARATH Isoform 1 of Aluminum induced protein with YGL and LRDR motifs OS=Arabidopsis thaliana OX=3702 GN=MQD19.19 PE=1 SV=1 CANONICAL=Q9FG81-1" }, "isoforms": [ { "isoform_ac": "Q9FG81-1", 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action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": 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"2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG81", "url": "https://www.uniprot.org/uniprotkb/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9FG81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FG81" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": 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"protein_names": [ { "name": "Ankyrin repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_199825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199825" }, { "id": "Q9FG97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MPF21.16", "url": "https://www.uniprot.org/uniprotkb/Q9FG97", "locus": {} } ], "crossref": [ { "id": "AT5G50140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G50140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835079", "url": "https://www.ncbi.nlm.nih.gov/gene/835079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G50140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFIRNDM", "url": "https://omabrowser.org/oma/group/KFIRNDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199825", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199825", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G50140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G50140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FG97-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALPMFGSIDFTNWFLKKLEEQDESFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKGFEAVDLLNKDDEDFKMMSMILGHDSEIVQRAASSPRDAYTPSTQTEVENSEIHHEQGLVAPEIKEENVTNENNKVFEAIDLPTKEDGDLKMLAGTDSETFQLPSSRTGILTPETETEMVISNTLHGIRHGLRESRIKEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVFSVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLAVIAMASAYVAGTCVTLPHSRGNKWVLKATLVIACVMLGGMFIFLWFKLANHMSRKKKMRKNMMSRIETLNKAAAFVDGYYSY", "length": 535, "header": "tr|Q9FG97-1|Q9FG97_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.16 PE=4 SV=1 CANONICAL=Q9FG97-1" }, "isoforms": [ { "isoform_ac": "Q9FG97-1", "url": "https://www.uniprot.org/uniprotkb/Q9FG97/entry#Q9FG97-1", "sequence": { "sequence": "MALPMFGSIDFTNWFLKKLEEQDESFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKGFEAVDLLNKDDEDFKMMSMILGHDSEIVQRAASSPRDAYTPSTQTEVENSEIHHEQGLVAPEIKEENVTNENNKVFEAIDLPTKEDGDLKMLAGTDSETFQLPSSRTGILTPETETEMVISNTLHGIRHGLRESRIKEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVFSVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLAVIAMASAYVAGTCVTLPHSRGNKWVLKATLVIACVMLGGMFIFLWFKLANHMSRKKKMRKNMMSRIETLNKAAAFVDGYYSY", "length": 535, "header": "tr|Q9FG97-1|Q9FG97_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=MPF21.16 PE=4 SV=1 CANONICAL=Q9FG97-1" }, "locus": { "chromosome": "5", "start_pos": 20395856, "end_pos": 20398197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50140.1", "url": "https://www.ensemblgenomes.org/id/AT5G50140.1" }, { "database": "Ensembl Peptide", "id": "AT5G50140.1", "url": "https://www.ensemblgenomes.org/id/AT5G50140.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G50140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9FG97", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FG97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG97" }, { "id": "PF13962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PGG", "eco_id": "ECO_0000259", "start_pos": 358, "end_pos": 467, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 281, "end_pos": 283 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": 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"table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FG99-1", "uniprot_ac": "Q9FG99", "uniprot_id": "Q9FG99_ARATH", "mass": { "chemical_mass": 42505.0, "monoisotopic_mass": 42505.0 }, "refseq": { "ac": "NP_199823", "name": "Transducin/WD40 repeat-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199823" }, "gene_names": [ { "name": "MPF21.14", "type": "recommended", "evidence": [ { "id": "Q9FG99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG99" } ] }, { "name": "MPF21.14", "type": "synonym", "evidence": [ { "id": "NP_199823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199823" } ] }, { "name": "MPF21_14", "type": "synonym", "evidence": [ { "id": "NP_199823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199823" }, { "id": "Q9FG99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG99" } ] } ], "protein_names": [ { "name": "Transducin/WD40 repeat-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_199823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199823" }, { "id": "Q9FG99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FG99", "url": "https://www.uniprot.org/uniprotkb/Q9FG99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MPF21.14", "url": "https://www.uniprot.org/uniprotkb/Q9FG99", "locus": {} } ], "crossref": [ { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835077", "url": "https://www.ncbi.nlm.nih.gov/gene/835077", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": 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protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FGD5-1" }, "locus": { "chromosome": "5", "start_pos": 26732795, "end_pos": 26736175, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G66950.1", "url": "https://www.ensemblgenomes.org/id/AT5G66950.1" }, { "database": "Ensembl Peptide", "id": "AT5G66950.1", "url": "https://www.ensemblgenomes.org/id/AT5G66950.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 384, "end_pos": 384, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser384" }, { "start_pos": 386, "end_pos": 386, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": 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"kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr870" }, { "start_pos": 95, "end_pos": 95, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser95" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGD5", "url": "https://www.uniprot.org/uniprotkb/Q9FGD5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" } ], "reference": [ 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molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGD5" } ], "reference": [ { 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Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGF3", "url": "https://www.uniprot.org/uniprotkb/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, 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"authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": 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"2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": 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Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9FGF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGF3" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": 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Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FGG4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGG4" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9FGG4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGG4" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia 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"https://www.ebi.ac.uk/interpro/entry/IPR050425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G58490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G58490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNEECWA", "url": "https://omabrowser.org/oma/group/KNEECWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FGH3", "url": "https://www.orthodb.org/?gene=Q9FGH3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10366:SF369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10366:SF369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200657", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G58490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G58490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FGH3", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGH3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTDEREVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHLFEMDLLQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAKEASVKRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEKGLDVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVYEDPYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQPGLLRDKNASKKLIDLGLKFISMEEIIKEGVESLKSKGFIS", "length": 324, "header": "tr|Q9FGH3-1|Q9FGH3_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQJ2.6 PE=1 SV=1 CANONICAL=Q9FGH3-1" }, "isoforms": [ { "isoform_ac": "Q9FGH3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3/entry#Q9FGH3-1", "sequence": { "sequence": "MLTDEREVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHLFEMDLLQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAKEASVKRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEKGLDVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVYEDPYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQPGLLRDKNASKKLIDLGLKFISMEEIIKEGVESLKSKGFIS", "length": 324, "header": "tr|Q9FGH3-1|Q9FGH3_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MQJ2.6 PE=1 SV=1 CANONICAL=Q9FGH3-1" }, "locus": { "chromosome": "5", "start_pos": 23643009, "end_pos": 23644679, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G58490.1", "url": "https://www.ensemblgenomes.org/id/AT5G58490.1" }, { "database": "Ensembl Peptide", "id": "AT5G58490.1", "url": "https://www.ensemblgenomes.org/id/AT5G58490.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGH3", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGH3", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G58490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G58490", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q86AQ3-1", "protein_name": "NAD-dependent epimerase/dehydratase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSIVENNDNLVAVTGATGFLGAYIVRDLLEQNYRVLAFVRDPYNQEKLKTLKSFDPTGSKLTFTGGDLETIDYEKELKNVNYVIHTASPFKYSSPDPWGEIINPAINGTLGVLKAASKISTIKKVIVTSSGLAVYDIGTKKPEINDDDWSNVQDPINQPYPYSKVAAEKKAWEYIKENNENPSTNHFKLVVINPSYILGAALSPLVNASVATIVRHLTLAEKPRNVAIGVVDVRDVSRSHLIALENDDANDQRLLVSAKVVTFKSISDSIVQLFPQFKFNTNTLNNEDPEPFIFNLKSTKLDKLNFGQFIPFDETLKTMTKHLLDLKIINPELKN", "length": 335 }, "evidence": [ { "id": "Q9FGH3", "url": "https://omabrowser.org/oma/group/Q9FGH3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9FGH3", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "Q9FGH3", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGH3" }, { "id": "PF01370", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAD-dependent epimerase/dehydratase", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 246, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 291, "end_pos": 293 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"https://www.uniprot.org/uniprotkb/Q9FGI2" } ] }, { "name": "MPA22.10", "type": "synonym", "evidence": [ { "id": "NP_198571", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198571" } ] }, { "name": "MPA22_10", "type": "synonym", "evidence": [ { "id": "NP_198571", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198571" }, { "id": "Q9FGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGI2" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9FGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGI2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_198571", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198571" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGI2", "url": "https://www.uniprot.org/uniprotkb/Q9FGI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MPA22.10", "url": "https://www.uniprot.org/uniprotkb/Q9FGI2", "locus": {} } ], "crossref": [ { "id": "AT5G37550", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G37550", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833733", "url": "https://www.ncbi.nlm.nih.gov/gene/833733", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FGI2", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FGI2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT5G37550", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MILMAPR", 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"MGILGCDAHGDLNDAEFSKPLPSIGIYVAVASLICGLAMAADLIHGFRHRKFWFPCKFFSLNATSLTFIAVGIKLSVDLNTSMPSRQDQLAKLSSTVFVCTVMGNSMPSLGIMDNNDLLMNLMALGILVITDVVNICIQLGTGAIYVFSEEHFLVVLLMLLMLMILCFSATTVPTTKRILESKYNKRYDVAMKCPLATERTVAKKIQQDLSKFWMMAHTSSPQFVMARSVTCTASGFFCLLSAITLGEAMVRSYFLRPRSLGFCHGDSDYKWSTSLVLVCQTTTVAIGTIAPAIRWFTAVNFRCPIRGKKYYRDEFRIESYWTHWFSEKKQHPLSLWILKERRYRKTAHNAKRWILDVCIVIQYVIVFGSKIIRYISVSCVGKILLCCHFALRTSNTITHSESEKSDSNPSSRQDLASFVLHLEGEDPLVDVMVRSNREATDHWIEKGRKKQPVNLIELLEATTPISKGFEGIAEFDSNKVASLAHGEPPNCWALPLVTLTSIAVALPDIKPSSLKKLLNAVNEALEYVNKFECVLDTGGESVNLRKAAEVVWLGVDLYHKWFDVDLRKLSKQQRNPEETLRELMEIAKKEFSESWQMNLMVCMKHKPSHWPIKTLAANSMYRICQTILLTYESRDYGTGEALLRKLESTISDIVSGCFCNVAQVISVKCLVSAVEVREESVRGAALHLGRTEKILEILERRRLPKLRCDQMKNIDEWRAFYKINSCECDNNNKTVYPDSDELRLTVE", "length": 748, "header": "tr|Q9FGJ9-1|Q9FGJ9_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=ASG7 PE=1 SV=1 CANONICAL=Q9FGJ9-1" }, "isoforms": [ { "isoform_ac": "Q9FGJ9-1", "url": 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"locus": { "chromosome": "5", "start_pos": 19294813, "end_pos": 19297424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47580.1", "url": "https://www.ensemblgenomes.org/id/AT5G47580.1" }, { "database": "Ensembl Peptide", "id": "AT5G47580.1", "url": "https://www.ensemblgenomes.org/id/AT5G47580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGJ9", "url": "https://www.uniprot.org/uniprotkb/Q9FGJ9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGJ9", "url": "https://www.uniprot.org/uniprotkb/Q9FGJ9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G47580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47580", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FGJ9", "url": "https://www.uniprot.org/uniprotkb/Q9FGJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 }, { "start_pos": 733, "end_pos": 735 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"type": "recommended", "evidence": [ { "id": "Q9FGK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3/entry#names_and_taxonomy" } ] }, { "name": "Mo25 family protein", "type": "synonym", "evidence": [ { "id": "NP_199565", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199565" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3", "locus": {} } ], "crossref": [ { "id": "Q9FGK3", "url": "https://alphafold.ebi.ac.uk/entry/Q9FGK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G47540", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G47540", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834804", "url": "https://www.ncbi.nlm.nih.gov/gene/834804", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47540", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47540", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYNEFTR", "url": "https://omabrowser.org/oma/group/HYNEFTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FGK3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FGK3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_199565", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199565", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47540", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47540", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNILVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRDLA", "length": 343, "header": "sp|Q9FGK3-1|MO25N_ARATH Isoform 1 of Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FGK3-1" }, "isoforms": [ { "isoform_ac": "Q9FGK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3/entry#Q9FGK3-1", "sequence": { "sequence": "MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNILVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRDLA", "length": 343, "header": "sp|Q9FGK3-1|MO25N_ARATH Isoform 1 of Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FGK3-1" }, "locus": { "chromosome": "5", "start_pos": 19283029, "end_pos": 19285758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47540.1", "url": "https://www.ensemblgenomes.org/id/AT5G47540.1" }, { "database": "Ensembl Peptide", "id": "AT5G47540.1", "url": "https://www.ensemblgenomes.org/id/AT5G47540.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 31, "end_pos": 31, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGK3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser31" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FGK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGK3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FGK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGK3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT5G47540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47540", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LKH8-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPVEAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHPHILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLTMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKVAP", "length": 334 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A4X1SLB8-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSTFQKERTDDEQFTDEKNYLIKQIRDLKKTTP", "length": 337 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8C2MI44-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQSMKEILCGTNDKEPPTEPVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGARSPTVEYISSHPHILSMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NV80-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILKENMAILEKQEKKTDKASEEVSKSLQAMKEILCGTTDKEPPTEVVAQLAQELYNSGLLVTLIANLQLIDFEGKKDVSQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYESPNIALRCGIMLRECIRHEPLAKIILFSEQFRDFFKYVEMSTFDIASDAFATFKDLLTRHKLLVADFMEQNYDTIFEDYEKLLHSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPNKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKPTA", "length": 334 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5XIJ7-1", "protein_name": "Calcium binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKELLCGAQDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYICSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKVILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DB16-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H9S4-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "CAB39L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP", "length": 337 }, "evidence": [ { "id": "Q9FGK3", "url": "https://omabrowser.org/oma/group/Q9FGK3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "Q9FGK3", "url": "https://www.uniprot.org/uniprotkb/Q9FGK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FGK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 343, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FGK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FGK3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 31 ], "sequon_annotation_sites": [ { "start_pos": 303, "end_pos": 305 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"MHQPFPGDSSPPNCLHGCFSSSPFHGTTSSEHPPHSTPTVTSATLRRNFAQTTVSTIFPDTEFTDPNSLPSHQESFSDFIQAYPNYSDTYKIDRLRSDHYFHLGLSHYTCLDYIGIGLYSYSQLLNYDPSTYQISSSLSESPFFSVSPKIGNLKEKLLNDGGQETEFEYSMKRRIMGFLKISEEDYSMVFTANRTSAFRLVAESYPFNSKRKLLTVYDYESEAVSEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGSRYPYLWMSVAQENGWHVMIDACGLGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSGFGCLFVKKSTISILESSTGPGMINLVPTDNPISLHALEINRTQTDSEETYSFSSSVEYKGLDHVDSLGLVATGNRSRCLINWLVSALYKLKHSTTSRLVKIYGPKVNFNRGPAVAFNLFNHKGEKIEPFIVQKLAECSNISLGKSFLKNILFQEDYEGVKDRVFEKKRNRDVDEPRISVLTAALGFLANFEDVYKLWIFVARFLDSEFVDKESVRCGVHVFEHKNREVV", "length": 570, "header": "tr|Q9FGL6-1|Q9FGL6_ARATH Isoform 1 of Pyridoxal phosphate (PLP)-dependent transferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MJM18.1 PE=1 SV=1 CANONICAL=Q9FGL6-1" }, "isoforms": [ { "isoform_ac": "Q9FGL6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGL6/entry#Q9FGL6-1", "sequence": { "sequence": 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{ "database": "Ensembl Peptide", "id": "AT5G51920.1", "url": "https://www.ensemblgenomes.org/id/AT5G51920.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FGM6-1", "uniprot_ac": "Q9FGM6", "uniprot_id": "Q9FGM6_ARATH", "mass": { "chemical_mass": 40632.0, "monoisotopic_mass": 40632.0 }, "refseq": { "ac": "NP_200122", "name": "NAD(P)-binding Rossmann-fold superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200122" }, "gene_names": [ { "name": "MFH8.2", "type": "recommended", "evidence": [ { "id": "Q9FGM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6" } ] }, { "name": "MFH8.2", "type": "synonym", "evidence": [ { "id": "NP_200122", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200122" } ] }, { "name": "MFH8_2", "type": "synonym", "evidence": [ { "id": "NP_200122", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200122" }, { "id": "Q9FGM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6" } ] } ], "protein_names": [ { "name": "NAD(P)-binding Rossmann-fold superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_200122", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200122" }, { "id": "Q9FGM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGM6", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFH8.2", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6", "locus": {} } ], "crossref": [ { "id": "AT5G53100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G53100", "database": "Araport", "categories": [ 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"MKKNDGLGWIQWMRGWFNVVQEILLQRIMASHLQIPFHLPPLNHLTCIVTGSTSGIGSETARQLAEAGAHVVMAVRNIKAAHELIQQWQTKWSASGEGLPLNIQAMELDLLSLDSVVRFSNAWNARLAPLHVLINNAGMFAMGGAQKFSEDGYEQHMQVNHLAPALLSLLLLPSLIRASRSRIINVNSVMHYVGFVDPNDMNFVSGKRKFSSLSAYSSSKLAQVMFNNVLLKKLPLETGISVVCLSPGVVQTNITRDLPRLVQDLYSALPYFIFSPQEGCRSSLFSATDPQIPNHYQKLKTNEKSVCTLFISLNCKLTNCSEEAQNVETANRVWEKTLELIGLPSDTVERLVEGEVVKCRYRTR", "length": 364, "header": "tr|Q9FGM6-1|Q9FGM6_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MFH8.2 PE=1 SV=1 CANONICAL=Q9FGM6-1" }, "isoforms": [ { "isoform_ac": "Q9FGM6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGM6/entry#Q9FGM6-1", "sequence": { "sequence": 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} ], "gene": [ { "name": "MDE13.2", "url": "https://www.uniprot.org/uniprotkb/Q9FGP1", "locus": {} } ], "crossref": [ { "id": "834662", "url": "https://www.ncbi.nlm.nih.gov/gene/834662", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EYYANDP", "url": "https://omabrowser.org/oma/group/EYYANDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": 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PE=1 SV=1 CANONICAL=Q9FGP1-1" }, "isoforms": [ { "isoform_ac": "Q9FGP1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGP1/entry#Q9FGP1-1", "sequence": { "sequence": "MASLWLKLISISLIYLNVIAKSTPHQESEFECVSIDKQSALQHPLMKNHRIQTRPSRELLSILSTSNGNILREIDLKGSEECPKGQVPIHKQKTNLTNSLIHPQQIHRAGRILKQSRRDKKKKKNNRRKKNKNKLMIPSALLSQKNKIPHHQPKLFTETHLHYAIVRTFENTTKKWRGAQALFNINKPRVVQNQFSKAWIWLNYIQGSLMSSIQFGWAVHTNLYSDDRPRLTTFWMSDQHPKGCYNALCPGGYVQIHKSIYPGLVYDKVNALGGKQNTVHLSVAEDPVTKNWVLTIGSIMIGYWPRQSQMVDGASEVYFGGFAGNTASSQPTTSPPMGTGEFPTKDLSRSCFMKQLKYVLSDYSVVDINANEVEQYVDSRKCYGVMFLKYVDYDSRETLTFGGPGGQC", "length": 408, "header": "tr|Q9FGP1-1|Q9FGP1_ARATH Isoform 1 of Carboxyl-terminal proteinase-like protein (DUF239) OS=Arabidopsis thaliana OX=3702 GN=MDE13.2 PE=1 SV=1 CANONICAL=Q9FGP1-1" }, "locus": { "chromosome": "5", "start_pos": 18727802, "end_pos": 18730331, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46200.1", "url": "https://www.ensemblgenomes.org/id/AT5G46200.1" }, { "database": "Ensembl Peptide", "id": "AT5G46200.1", "url": "https://www.ensemblgenomes.org/id/AT5G46200.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 196, "end_pos": 196, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGP1" } ], "site_lbl": "Ser196" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray 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Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGR1", "url": "https://www.uniprot.org/uniprotkb/Q9FGR1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FGR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGR1" } ], 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"length": 1046, "header": "tr|Q9FGT2-1|Q9FGT2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGT2-1" }, "isoforms": [ { "isoform_ac": "Q9FGT2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2/entry#Q9FGT2-1", "sequence": { "sequence": 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"length": 1046, "header": "tr|Q9FGT2-1|Q9FGT2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FGT2-1" }, "locus": { "chromosome": "5", "start_pos": 23517256, "end_pos": 23521067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G58120.1", "url": "https://www.ensemblgenomes.org/id/AT5G58120.1" }, { "database": "Ensembl Peptide", "id": "AT5G58120.1", "url": "https://www.ensemblgenomes.org/id/AT5G58120.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 10, "end_pos": 10, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser10" }, { "start_pos": 3, "end_pos": 3, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser3" }, { "start_pos": 505, "end_pos": 505, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" } ], "site_lbl": "Thr505" }, { "start_pos": 5, "end_pos": 5, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser5" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser6" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FGT2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGT2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G58120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G58120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "pmid": "" }, { "name": "cellular response to hypoxia", "id": "GO:0071456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071456", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FGT2", "url": "https://www.uniprot.org/uniprotkb/Q9FGT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, 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Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGU5", "url": "https://www.uniprot.org/uniprotkb/Q9FGU5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G59080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGU5", "url": "https://www.uniprot.org/uniprotkb/Q9FGU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { 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"start_pos": 14620732, "end_pos": 14623093, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37010.1", "url": "https://www.ensemblgenomes.org/id/AT5G37010.1" }, { "database": "Ensembl Peptide", "id": "AT5G37010.1", "url": "https://www.ensemblgenomes.org/id/AT5G37010.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 246, "end_pos": 246, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser246" }, { "start_pos": 250, "end_pos": 250, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr250" }, { "start_pos": 291, "end_pos": 291, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser291" }, { "start_pos": 586, "end_pos": 586, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser586" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGV2", "url": "https://www.uniprot.org/uniprotkb/Q9FGV2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FGV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FGV2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGV2", "url": "https://www.uniprot.org/uniprotkb/Q9FGV2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37010", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGV2", "url": "https://www.uniprot.org/uniprotkb/Q9FGV2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FGV4-1", "uniprot_ac": "Q9FGV4", "uniprot_id": "Q9FGV4_ARATH", "mass": { "chemical_mass": 46742.0, "monoisotopic_mass": 46742.0 }, "refseq": { "ac": "NP_199606", "name": "HXXXD-type acyl-transferase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199606" }, "gene_names": [ { "name": "BIA2", "type": "recommended", "evidence": [ { "id": "Q9FGV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4" } ] }, { "name": "K16F13.6", "type": "synonym", "evidence": [ { "id": "NP_199606", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199606" }, { "id": "Q9FGV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4" } ] }, { "name": "K16F13_6", "type": "synonym", "evidence": [ { "id": "NP_199606", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199606" }, { "id": "Q9FGV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4" } ] } ], "protein_names": [ { "name": "HXXXD-type acyl-transferase family protein", "type": "synonym", "evidence": [ { "id": "NP_199606", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199606" }, { "id": "Q9FGV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV4", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "BIA2", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4", "locus": {} } ], "crossref": [ { "id": "AT5G47950", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G47950", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834846", "url": "https://www.ncbi.nlm.nih.gov/gene/834846", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47950", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WCKIPLY", "url": "https://omabrowser.org/oma/group/WCKIPLY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31623:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199606", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199606", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FGV4", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGV4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTMKVETIGKEIIKPSATTPTDLSTLQLSIMDILMPPVYAVAFLFYTKDDLISQEQTSHTLKTSLSEILTKFHPLAGRVNGVTIKSTDEGAVFVEARVDNCDLSGFLRSPDTESLKQLLPVDDEPAPTWPLLLVKATYFRCGGMAIGLCISHRLADAASLSIFLQAWAATARGESDLVASPDFCSTKLYPAANEAIKIPGEVVNRTSVTKRFVFVASKIEELRNKVASDVVPRPTRVQSVTSLIWKCVVTASTDTIREKALFQPANLRTKIPSLLSENQIGNLLFNSLILDGKAGMDIVETVKELQKRAEDLSGLVQDEEGSSMTIGWRLFGEIINSKFNREDHDMHSVTSWCKIPLYDACFGWGSPVWVAGSVSPNLDYVTVLIDSKDGQGIEAWVTLPQENMLLLEQSTELLAFASPNPSVLI", "length": 426, "header": "tr|Q9FGV4-1|Q9FGV4_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN=BIA2 PE=1 SV=1 CANONICAL=Q9FGV4-1" }, "isoforms": [ { "isoform_ac": "Q9FGV4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV4/entry#Q9FGV4-1", "sequence": { "sequence": "MDTMKVETIGKEIIKPSATTPTDLSTLQLSIMDILMPPVYAVAFLFYTKDDLISQEQTSHTLKTSLSEILTKFHPLAGRVNGVTIKSTDEGAVFVEARVDNCDLSGFLRSPDTESLKQLLPVDDEPAPTWPLLLVKATYFRCGGMAIGLCISHRLADAASLSIFLQAWAATARGESDLVASPDFCSTKLYPAANEAIKIPGEVVNRTSVTKRFVFVASKIEELRNKVASDVVPRPTRVQSVTSLIWKCVVTASTDTIREKALFQPANLRTKIPSLLSENQIGNLLFNSLILDGKAGMDIVETVKELQKRAEDLSGLVQDEEGSSMTIGWRLFGEIINSKFNREDHDMHSVTSWCKIPLYDACFGWGSPVWVAGSVSPNLDYVTVLIDSKDGQGIEAWVTLPQENMLLLEQSTELLAFASPNPSVLI", "length": 426, "header": "tr|Q9FGV4-1|Q9FGV4_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN=BIA2 PE=1 SV=1 CANONICAL=Q9FGV4-1" }, "locus": { "chromosome": "5", "start_pos": 19417020, "end_pos": 19418657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47950.1", "url": "https://www.ensemblgenomes.org/id/AT5G47950.1" }, { "database": "Ensembl Peptide", "id": "AT5G47950.1", "url": "https://www.ensemblgenomes.org/id/AT5G47950.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { 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"https://www.uniprot.org/uniprotkb/Q9FGZ3", "locus": {} } ], "crossref": [ { "id": "835014", "url": "https://www.ncbi.nlm.nih.gov/gene/835014", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G49530", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INTECEN", "url": "https://omabrowser.org/oma/group/INTECEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12069", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12069", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12069:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12069:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FGZ3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FGZ3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G49530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G49530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FGZ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFDDDDKPKEVTKTRRFAPGRAGKSKPKPKPEPTADKPVQPPPQSQTESVSKTEHDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQEEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSMDVHSKNYDSNFGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDWKFKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVKPEVPTTLSDKGGSSKNTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEICETNSSGWVLQKAR", "length": 689, "header": "tr|Q9FGZ3-1|Q9FGZ3_ARATH Isoform 1 of SIN-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FGZ3-1" }, "isoforms": [ { "isoform_ac": "Q9FGZ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3/entry#Q9FGZ3-1", "sequence": { "sequence": "MDFDDDDKPKEVTKTRRFAPGRAGKSKPKPKPEPTADKPVQPPPQSQTESVSKTEHDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQEEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSMDVHSKNYDSNFGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDWKFKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVKPEVPTTLSDKGGSSKNTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEICETNSSGWVLQKAR", "length": 689, "header": "tr|Q9FGZ3-1|Q9FGZ3_ARATH Isoform 1 of SIN-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FGZ3-1" }, "locus": { "chromosome": "5", "start_pos": 20100545, "end_pos": 20104605, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G49530.1", "url": "https://www.ensemblgenomes.org/id/AT5G49530.1" }, { "database": "Ensembl Peptide", "id": "AT5G49530.1", "url": "https://www.ensemblgenomes.org/id/AT5G49530.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G49530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49530", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q86JI9-1", "protein_name": "RNA polymerase III subunit", "gene_name": "rpc5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3" } ], "pmid": "" }, { "name": "RNA polymerase III complex", "id": "GO:0005666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005666", "evidence": [ { "database": "UniProtKB", "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "Q9FGZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FGZ5-1", "uniprot_ac": "Q9FGZ5", "uniprot_id": "Q9FGZ5_ARATH", "mass": { "chemical_mass": 32426.0, "monoisotopic_mass": 32426.0 }, "refseq": { "ac": "NP_199760", "name": "AGAMOUS-like 83", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199760" }, "gene_names": [ { "name": "AGL83", "type": "recommended", "evidence": [ { "id": "Q9FGZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ5" } ] }, { "name": "AGAMOUS-like 83", "type": "synonym", "evidence": [ { "id": "NP_199760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199760" }, { "id": "Q9FGZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGZ5" } ] }, { "name": "AGL83", "type": "synonym", "evidence": [ { "id": "NP_199760", "database": "RefSeq", "url": 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Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKQKNDY", "url": "https://omabrowser.org/oma/group/GKQKNDY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32472", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32472", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32472:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32472:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G56220", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56220", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FH17-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGIEEEASLVGLTIRTSSPASSSSKKGKEDLLQANNNASDSSPSIKNSPFYSPSLVSPPSSAFVSALQSPYISPRATTPSITTHKPSPPLSYKGSQSDDVPSSSYTPPSDQYEFSDEQPSDRKLKLSASCTPDPAPPRISFSFPVPRVSLAKVSVSSPATNTKLRSSDVFIGFHGQNPNLVRFCKWLKSELELQGIACFVADRAKYSDTQSHEIADRVICSVTYGIVVVSCSSLLNYLSLEEVRFFAQKKNLIPIFYGTGPSEIMGLLNCNAIDKECKEAIDGLIKSHEFKLEANESNWRSCVGKTATILRAKLGRKSVADKEIVEGIDELPFPRNRSFLGREKEIIEMEMALFGNGEYLESTTPSTRGEASGQSEGLADEESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSVVCVNGVPGIGKTELALEFAYRYSQRYKMVLWVGGEARYFRQNLLNLSFSLGLDVSADAEKDRGRLRSFDEQEFEAFKRIKRELFRDMPYLLIIDNLEIEKDWWEGKDLNDLIPRNTGGTHVLITTRLPKVMTFDTVQLSILPSSDAMVLLRGRRKKDYPVEEVEVLKLFDEKLGRLSYGLWVVGSLLSELAILPSALFEAVNKVQIEERSASPFLNLNDEQYCKSNPFVAKVLAFSLAVLEQAEGNRNLLSLKMLLVGAWFAPVPIPVNLLAAAAKNMPTGGNRFSKWNKCLSHTFAWCGGCGLGRRSEEDAAFLLVRLGLARLTNRQPGCWIQFHPITQTFARRRDYILAPKATVQGVRKIDNPLLNLDHLWASAFLVFGFKSEPPLVQLQAMDMVLYIKRTALPLAITAFTTFSRCNSALELLKVCTNVLEEVEKSFVSQIQDWRQGSLCWKKKTNKKVDEYVWQDVTLLKALLLETRAKLLLRGGHFDSGEELCRTCISIRTVMLGHNHDLTLAAQETLAKLVRMRSKI", "length": 973, "header": "tr|Q9FH17-1|Q9FH17_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FH17-1" }, "isoforms": [ { "isoform_ac": "Q9FH17-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH17/entry#Q9FH17-1", "sequence": { "sequence": "MKGIEEEASLVGLTIRTSSPASSSSKKGKEDLLQANNNASDSSPSIKNSPFYSPSLVSPPSSAFVSALQSPYISPRATTPSITTHKPSPPLSYKGSQSDDVPSSSYTPPSDQYEFSDEQPSDRKLKLSASCTPDPAPPRISFSFPVPRVSLAKVSVSSPATNTKLRSSDVFIGFHGQNPNLVRFCKWLKSELELQGIACFVADRAKYSDTQSHEIADRVICSVTYGIVVVSCSSLLNYLSLEEVRFFAQKKNLIPIFYGTGPSEIMGLLNCNAIDKECKEAIDGLIKSHEFKLEANESNWRSCVGKTATILRAKLGRKSVADKEIVEGIDELPFPRNRSFLGREKEIIEMEMALFGNGEYLESTTPSTRGEASGQSEGLADEESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSVVCVNGVPGIGKTELALEFAYRYSQRYKMVLWVGGEARYFRQNLLNLSFSLGLDVSADAEKDRGRLRSFDEQEFEAFKRIKRELFRDMPYLLIIDNLEIEKDWWEGKDLNDLIPRNTGGTHVLITTRLPKVMTFDTVQLSILPSSDAMVLLRGRRKKDYPVEEVEVLKLFDEKLGRLSYGLWVVGSLLSELAILPSALFEAVNKVQIEERSASPFLNLNDEQYCKSNPFVAKVLAFSLAVLEQAEGNRNLLSLKMLLVGAWFAPVPIPVNLLAAAAKNMPTGGNRFSKWNKCLSHTFAWCGGCGLGRRSEEDAAFLLVRLGLARLTNRQPGCWIQFHPITQTFARRRDYILAPKATVQGVRKIDNPLLNLDHLWASAFLVFGFKSEPPLVQLQAMDMVLYIKRTALPLAITAFTTFSRCNSALELLKVCTNVLEEVEKSFVSQIQDWRQGSLCWKKKTNKKVDEYVWQDVTLLKALLLETRAKLLLRGGHFDSGEELCRTCISIRTVMLGHNHDLTLAAQETLAKLVRMRSKI", "length": 973, "header": "tr|Q9FH17-1|Q9FH17_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FH17-1" }, "locus": { "chromosome": "5", "start_pos": 22753973, "end_pos": 22758057, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56220.1", "url": "https://www.ensemblgenomes.org/id/AT5G56220.1" }, { "database": "Ensembl Peptide", "id": "AT5G56220.1", "url": "https://www.ensemblgenomes.org/id/AT5G56220.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G56220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "pmid": "" }, { "name": "recombinational repair", "id": "GO:0000725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000725", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "pmid": "" }, { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FH17", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FH17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH17" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 315, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 486, "end_pos": 488 } ] }, "class_list": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FH19-1", "uniprot_ac": "Q9FH19", "uniprot_id": "Q9FH19_ARATH", "mass": { "chemical_mass": 54528.0, "monoisotopic_mass": 54528.0 }, "refseq": {}, "gene_names": [ { "name": "K24C1.1", "type": "synonym", "evidence": [ { "id": "Q9FH19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ] }, { "name": "K24C1_1", "type": "synonym", "evidence": [ { "id": "Q9FH19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ] } ], "protein_names": [ { "name": "C2H2 type zinc finger transcription factor family", "type": "synonym", "evidence": [ { "id": "Q9FH19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH19/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH19", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FH19", "locus": {} } ], "crossref": [ { "id": "AT5G56200", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G56200", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835719", "url": "https://www.ncbi.nlm.nih.gov/gene/835719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FH19", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FH19*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G56200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LWDNHWE", "url": "https://omabrowser.org/oma/group/LWDNHWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G56200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FH19", "url": "https://www.uniprot.org/uniprotkb/Q9FH19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FH19-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQLRGYKTNCGFSLGKPRFGSIKVKIPRIKPEIEEDQVEEDDEAKNIGLEEEENDHEAKSMDLEQGDVEEEEGEEKKHICCECGKRFVSGKALGGHKRIHVLETRKFSMMRPKMVSGMVGRSERGDLEVACCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLLPHPLGNSSSSTLDHDDEFISSDYDDDDDFDDDDDDDDDENSELWDSNLELENVVESIKGWSTKGKRGRRGDLKFDEADLKDPPLEDVKDIDDANGLLFLATTAEAAANLNVAETSASRSVEEKYLEMVKKRKKKQKRLSEMEKESSTSTHHDHQLDQVVVVAAEEGGGAGAREKHVCVTCNKSFSSYQALGGHRASHNKVKILENHQARANAEASLLGTEAIITGLASAQGTNTSLSSSHNGDHVCNICHKSFSTGQALGGHKRCHWTAPVSTVAPTTVPTAAPTVPATASSSQVTETVQEVKKLKRRVLEFDLNELPPNEEEERV", "length": 493, "header": "tr|Q9FH19-1|Q9FH19_ARATH Isoform 1 of C2H2 type zinc finger transcription factor family OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FH19-1" }, "isoforms": [ { "isoform_ac": "Q9FH19-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH19/entry#Q9FH19-1", "sequence": { "sequence": "MDQLRGYKTNCGFSLGKPRFGSIKVKIPRIKPEIEEDQVEEDDEAKNIGLEEEENDHEAKSMDLEQGDVEEEEGEEKKHICCECGKRFVSGKALGGHKRIHVLETRKFSMMRPKMVSGMVGRSERGDLEVACCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLLPHPLGNSSSSTLDHDDEFISSDYDDDDDFDDDDDDDDDENSELWDSNLELENVVESIKGWSTKGKRGRRGDLKFDEADLKDPPLEDVKDIDDANGLLFLATTAEAAANLNVAETSASRSVEEKYLEMVKKRKKKQKRLSEMEKESSTSTHHDHQLDQVVVVAAEEGGGAGAREKHVCVTCNKSFSSYQALGGHRASHNKVKILENHQARANAEASLLGTEAIITGLASAQGTNTSLSSSHNGDHVCNICHKSFSTGQALGGHKRCHWTAPVSTVAPTTVPTAAPTVPATASSSQVTETVQEVKKLKRRVLEFDLNELPPNEEEERV", "length": 493, "header": "tr|Q9FH19-1|Q9FH19_ARATH Isoform 1 of C2H2 type zinc finger transcription factor family OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FH19-1" }, "locus": { "chromosome": "5", "start_pos": 22747478, "end_pos": 22749427, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56200.1", "url": "https://www.ensemblgenomes.org/id/AT5G56200.1" }, { "database": "Ensembl Peptide", "id": "AT5G56200.1", "url": "https://www.ensemblgenomes.org/id/AT5G56200.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FH19", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FH19", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G56200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q9FH19", "url": "https://www.uniprot.org/uniprotkb/Q9FH19" } ], "pmid": "" }, { "name": "zinc ion binding", "id": 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"header": "tr|Q9FH20-1|Q9FH20_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FH20-1" }, "isoforms": [ { "isoform_ac": "Q9FH20-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH20/entry#Q9FH20-1", "sequence": { "sequence": 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"header": "tr|Q9FH20-1|Q9FH20_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FH20-1" }, "locus": { "chromosome": "5", "start_pos": 19918971, "end_pos": 19923415, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G49140.1", "url": "https://www.ensemblgenomes.org/id/AT5G49140.1" }, { "database": "Ensembl Peptide", "id": "AT5G49140.1", "url": "https://www.ensemblgenomes.org/id/AT5G49140.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 117, "end_pos": 117, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH20", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH20" } ], "site_lbl": "Thr117" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G49140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FH20", "url": "https://www.uniprot.org/uniprotkb/Q9FH20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FH24-1", "uniprot_ac": "Q9FH24", "uniprot_id": "Q9FH24_ARATH", "mass": { "chemical_mass": 42050.0, "monoisotopic_mass": 42050.0 }, "refseq": {}, "gene_names": [ { "name": "K20J1.7", "type": "synonym", "evidence": [ { "id": "Q9FH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH24" } ] }, { "name": "K20J1_7", "type": "synonym", "evidence": [ { "id": "Q9FH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH24" } ] } ], "protein_names": [ { "name": "Vitellogenin-like protein", "type": "synonym", "evidence": [ { "id": "Q9FH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FH24/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH24", "url": "https://www.uniprot.org/uniprotkb/Q9FH24" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FH24", "locus": {} } ], "crossref": [ { "id": "834969", "url": "https://www.ncbi.nlm.nih.gov/gene/834969", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G49100", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G49100", "database": "KEGG Pathway", "categories": [ 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], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FH24", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH24" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck 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"Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FH33", "locus": {} } ], "crossref": [ { "id": "835561", "url": "https://www.ncbi.nlm.nih.gov/gene/835561", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G54720", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G54720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR24121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24121:SF23", "url": 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Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FH33-1" }, "isoforms": [ { "isoform_ac": "Q9FH33-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH33/entry#Q9FH33-1", "sequence": { "sequence": "MNLYGSYLDDIADQIPVDRSRSQMIRKYLGKQRKNLDLIDEVVEARLIRQLEANQSILEKTDKHKYDYEEYATILHREEYEEYATKIIDLCPSLVRVANVDGNTPLHLAAEIGNEFILWKMLRCGEADCRKINKQGQTAFILACLNNHVAVALTLLQYMRSMTMVELDAAFSRHQPGLKLSSHKL", "length": 185, "header": "tr|Q9FH33-1|Q9FH33_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FH33-1" }, "locus": { "chromosome": "5", "start_pos": 22231448, "end_pos": 22232949, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54720.1", "url": "https://www.ensemblgenomes.org/id/AT5G54720.1" }, { "database": "Ensembl Peptide", "id": "AT5G54720.1", "url": "https://www.ensemblgenomes.org/id/AT5G54720.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], 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Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FH33", "url": "https://www.uniprot.org/uniprotkb/Q9FH33" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G54720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G54720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09331", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09331", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G45570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FH44", "url": "https://www.uniprot.org/uniprotkb/Q9FH44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FH44-1", "url": "https://www.uniprot.org/uniprotkb/Q9FH44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSHTRSYPLRLYEEGKSPLQKRSMAHSCYVSQIGKIKDGLGADVWDELKKTTLGLFIKFTESGFIWAAQTVHFFLTNQLRVDNIHEMWCLIDRRPIRFSLYEFENITGLNCDMFDESDTGETDYKDFWNEMGVSMSVGPLFTELERVFEISKTWSLEKRMMVGRLCLLSVGVHGIHHGSRVPLSSAKRVLDPVAFEKYPWGRVAFDSLSRSVKIVKYDGDSYVIHGCVQTLLVWIYESVPGIGEACGFRKTNLTGVPLLDWRSSRKRFNFTAFIEKEKAAHGQVRVRHMIPVSEENMYPQWSDSAENHDTALDNLLKDIIHNRLKSHAWTHVAARRKRKQNQESSNEDGESKVIESTPADDVSHKKQRTGKAHIKVDEEEKTSLLDIWNMLEKMNVTISDMDKNASSRLVGLEKKVACLEASVKTRFEAVETDMRVLKESQPPVVSNEAATSNNNDEYEANSNQCSWIVEEKPGSVDGLPIQRVVKKTVNLVKNKEAATKVLTKKKVAKYDKKKTIVNVEKVEKPKPEMKKTVVKVEKVDSPKPLQKKSVAAPTTKTFDDDVVDVTDKMANKATADALRALQEGLDNLDGITSKRRRVPQLAGSQKYPYVGNSTVKRIITDVPSSSSVPEHLQPVSDDQFDRLKDWLEPDFEKEGLNTNNFNARFYWQIMTPRNDWPTERYGWLKDYHMGAAMSLFRRRFNRDPSKYPNQRIAFLDQDLISTMLKDYKQFQPDYRCFKFREYYEDQVNGTAHCEAATNKKWFVDVDHLYAYLFVNGNHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPSKQRRRSYSKLEWKRITKIPENLDPGDCAIYSIKYIECLALGKSFDGLCDENMQSLRTKLAVEMFEEIGENARTLHSKVRRKAFKFPSLMDE", "length": 921, "header": "tr|Q9FH44-1|Q9FH44_ARATH Isoform 1 of Ulp1 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protease family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FH44-1" }, "locus": { "chromosome": "5", "start_pos": 18471498, "end_pos": 18475574, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45570.2", "url": "https://www.ensemblgenomes.org/id/AT5G45570.2" }, { "database": "Ensembl Peptide", "id": "AT5G45570.2", "url": "https://www.ensemblgenomes.org/id/AT5G45570.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, 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McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHD1", "url": "https://www.uniprot.org/uniprotkb/Q9FHD1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", 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"categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45540", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45540", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CATCICH", "url": "https://omabrowser.org/oma/group/CATCICH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31325", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31325", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13968", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199367", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199367", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45540", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45540", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHI2", "url": "https://www.uniprot.org/uniprotkb/Q9FHI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHI2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDMIPPHLRKLWDKWNIRGVIILSLFLQTILIFFAPSRRRTAKKLFLVLIWSAYLLADWAADYAVGQISDSQEEEAESNKPSKNRELLAFWSPFLLLHLGGPDTITALALEDNELWDRHLFSLVCQAVATVYVILLSIPNRLLTPTLIMFVGGVIKYVERTAALFSASLDKFKDSMLDDPDPGANYAKLMEEYEARKKMNMPTDVIVVKDPEKGREGNTPVRPDNELTALQVIQYAYKYFNIFKGLIVDLIFTNQERDESRKFFDKLTAEEALRIIEVELGLIYDCLFTKAEILHNWTGAVFRFIALGCLVASLCLFKMNKKDQYDGFDVVLTYALLICGIALDSIALLMFCVSDWTIARLRKLKEDLEEKDTLTDRVLNWILDFKTLRWKRSKCSQDGHQVLNRNFMFRRWSEYVHAYNLIGFCLGIRPKRIHYTKGKIHSFFHQTVHILSIDTAIENATRGTRQFHNWIGRFLSNLSKRDNSVIRTGLRWFLFFPQLLGLLIYNFLDFFGIKDLVEEIRFTVSDRLTRELWEFIFTEVQQKHRFAEDQESAKGISSARGNWTLLETSSKKKEDGTDHTKLLQYVTEKDYDQSILLWHIATELLYQKPIDKKVTEKEEHSTNREKEEHSNREFSKILSDYMMYLLIVQPTLMSAVSGIAKIRFRDTCEEAKDFFQRRHVDKSRYVKKNLMKEACRAILSVNTEIDPMAVKGDRSKSVLFDASVLAKELMNEGENMWEVVSKVWVELLCYASLHCDSQEHASQLSKGGELINFVWLLMAHFGLGDQFQINRDDARAKLIVAN", "length": 803, "header": "tr|Q9FHI2-1|Q9FHI2_ARATH Isoform 1 of Transmembrane protein, putative (DUF594) OS=Arabidopsis thaliana OX=3702 GN=MFC19.21 PE=1 SV=1 CANONICAL=Q9FHI2-1" }, "isoforms": [ { "isoform_ac": "Q9FHI2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI2/entry#Q9FHI2-1", "sequence": { "sequence": "MTDMIPPHLRKLWDKWNIRGVIILSLFLQTILIFFAPSRRRTAKKLFLVLIWSAYLLADWAADYAVGQISDSQEEEAESNKPSKNRELLAFWSPFLLLHLGGPDTITALALEDNELWDRHLFSLVCQAVATVYVILLSIPNRLLTPTLIMFVGGVIKYVERTAALFSASLDKFKDSMLDDPDPGANYAKLMEEYEARKKMNMPTDVIVVKDPEKGREGNTPVRPDNELTALQVIQYAYKYFNIFKGLIVDLIFTNQERDESRKFFDKLTAEEALRIIEVELGLIYDCLFTKAEILHNWTGAVFRFIALGCLVASLCLFKMNKKDQYDGFDVVLTYALLICGIALDSIALLMFCVSDWTIARLRKLKEDLEEKDTLTDRVLNWILDFKTLRWKRSKCSQDGHQVLNRNFMFRRWSEYVHAYNLIGFCLGIRPKRIHYTKGKIHSFFHQTVHILSIDTAIENATRGTRQFHNWIGRFLSNLSKRDNSVIRTGLRWFLFFPQLLGLLIYNFLDFFGIKDLVEEIRFTVSDRLTRELWEFIFTEVQQKHRFAEDQESAKGISSARGNWTLLETSSKKKEDGTDHTKLLQYVTEKDYDQSILLWHIATELLYQKPIDKKVTEKEEHSTNREKEEHSNREFSKILSDYMMYLLIVQPTLMSAVSGIAKIRFRDTCEEAKDFFQRRHVDKSRYVKKNLMKEACRAILSVNTEIDPMAVKGDRSKSVLFDASVLAKELMNEGENMWEVVSKVWVELLCYASLHCDSQEHASQLSKGGELINFVWLLMAHFGLGDQFQINRDDARAKLIVAN", "length": 803, "header": "tr|Q9FHI2-1|Q9FHI2_ARATH Isoform 1 of Transmembrane protein, putative (DUF594) OS=Arabidopsis thaliana OX=3702 GN=MFC19.21 PE=1 SV=1 CANONICAL=Q9FHI2-1" }, "locus": { "chromosome": "5", "start_pos": 18457870, "end_pos": 18460914, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45540.1", "url": "https://www.ensemblgenomes.org/id/AT5G45540.1" }, { "database": "Ensembl Peptide", "id": "AT5G45540.1", "url": "https://www.ensemblgenomes.org/id/AT5G45540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI2", "url": "https://www.uniprot.org/uniprotkb/Q9FHI2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI2", "url": "https://www.uniprot.org/uniprotkb/Q9FHI2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45540", "resource": "KEGG Pathway" } ], "orthologs": [], 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"PF13968", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4220", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 424, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 297, "end_pos": 299 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 478, "end_pos": 480 }, { "start_pos": 563, "end_pos": 565 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FHI3-1", "uniprot_ac": "Q9FHI3", "uniprot_id": "Q9FHI3_ARATH", "mass": { "chemical_mass": 92272.0, "monoisotopic_mass": 92272.0 }, "refseq": { "ac": "NP_199366", "name": "transmembrane protein, putative (DUF594)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199366" }, "gene_names": [ { "name": "MFC19.20", "type": "recommended", "evidence": [ { "id": "Q9FHI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" } ] }, { "name": "MFC19.20", "type": "synonym", "evidence": [ { "id": "NP_199366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199366" } ] }, { "name": "MFC19_20", "type": "synonym", "evidence": [ { "id": "NP_199366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199366" }, { "id": "Q9FHI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" } ] } ], "protein_names": [ { "name": "Transmembrane protein, putative (DUF594)", "type": "synonym", "evidence": [ { "id": "Q9FHI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein, putative (DUF594)", "type": "synonym", "evidence": [ { "id": "NP_199366", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199366" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHI3", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFC19.20", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3", "locus": {} } ], "crossref": [ { "id": "AT5G45530", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45530", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834589", "url": "https://www.ncbi.nlm.nih.gov/gene/834589", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007658", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45530", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYESMYT", "url": "https://omabrowser.org/oma/group/LYESMYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31325", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31325", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13968", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199366", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199366", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHI3", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHI3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVIPPAIKKILDKWNIRGLVIMSLLFQTSLIFLAPMRKRTSKKLLAAVLWTAYLLADWTANYAVSQITKNQGKETEPGDPPKNKKLLALWAPFLLLHLGGPDTITALALEDNALWQRHLFGLVSQALAGVYAVVQSLENVLWPPITLLFITGTIKYVERTRALYSASLDKFKDRMLQRADAGSNYAKLMEEFASRKMSNLPTEIFLTDEPDKHERPPTLVKPDRDLTDLEIVQYGFKFFNTFKGLVVDLIFSFRERDESRDFFKELKPGEALRIIETELGFLYESMYTKTAILHTGIGTLFRLISFGSLLSSFFVFHRRPLKSEDFHGADVVITYVLFIVGIALDLASMVIFLLSDWTFAVLRNLKDDPEEKSTSIDSLFNWFLEFRKPRWKKHTCNGNQTHEVLSTGFFTRRWSGTIYGFNFIGFCLKAKVSRIHQKRNCNLLVWDYVVSLFDLVIRRIQMMIGWIKNVNRSIRSVLRQWSKKNPMIRCTVYPLYLVFFAGIPEVFRVLWKYIDRIFSVTSYLDGIRFISREPLTKNQWEFIFNEVKDKSGFAETPEVAKKVSWARGEWALRDSKLMEVDTLMRYIEKVDYDQSLLLWHIATELCFQKEEGGKMEKLSREGYDDREFSKIISDYMMYLLIMRPKLMSEVAGIGTIRFRDTKAEAERFFKGRQIKDLRDMKRASETVLLVSNDIEPILVKGDRSKSVLFDASMLAKELQNLKESSNEDGKWRVLSKVWVELLCYAASHCKATEHVAQLSRGGELLNFVWLLMAHFGLGDQFQINKGDARAKLVVGEG", "length": 798, "header": "tr|Q9FHI3-1|Q9FHI3_ARATH Isoform 1 of Transmembrane protein, putative (DUF594) OS=Arabidopsis thaliana OX=3702 GN=MFC19.20 PE=4 SV=1 CANONICAL=Q9FHI3-1" }, "isoforms": [ { "isoform_ac": "Q9FHI3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3/entry#Q9FHI3-1", "sequence": { "sequence": "MQVIPPAIKKILDKWNIRGLVIMSLLFQTSLIFLAPMRKRTSKKLLAAVLWTAYLLADWTANYAVSQITKNQGKETEPGDPPKNKKLLALWAPFLLLHLGGPDTITALALEDNALWQRHLFGLVSQALAGVYAVVQSLENVLWPPITLLFITGTIKYVERTRALYSASLDKFKDRMLQRADAGSNYAKLMEEFASRKMSNLPTEIFLTDEPDKHERPPTLVKPDRDLTDLEIVQYGFKFFNTFKGLVVDLIFSFRERDESRDFFKELKPGEALRIIETELGFLYESMYTKTAILHTGIGTLFRLISFGSLLSSFFVFHRRPLKSEDFHGADVVITYVLFIVGIALDLASMVIFLLSDWTFAVLRNLKDDPEEKSTSIDSLFNWFLEFRKPRWKKHTCNGNQTHEVLSTGFFTRRWSGTIYGFNFIGFCLKAKVSRIHQKRNCNLLVWDYVVSLFDLVIRRIQMMIGWIKNVNRSIRSVLRQWSKKNPMIRCTVYPLYLVFFAGIPEVFRVLWKYIDRIFSVTSYLDGIRFISREPLTKNQWEFIFNEVKDKSGFAETPEVAKKVSWARGEWALRDSKLMEVDTLMRYIEKVDYDQSLLLWHIATELCFQKEEGGKMEKLSREGYDDREFSKIISDYMMYLLIMRPKLMSEVAGIGTIRFRDTKAEAERFFKGRQIKDLRDMKRASETVLLVSNDIEPILVKGDRSKSVLFDASMLAKELQNLKESSNEDGKWRVLSKVWVELLCYAASHCKATEHVAQLSRGGELLNFVWLLMAHFGLGDQFQINKGDARAKLVVGEG", "length": 798, "header": "tr|Q9FHI3-1|Q9FHI3_ARATH Isoform 1 of Transmembrane protein, putative (DUF594) OS=Arabidopsis thaliana OX=3702 GN=MFC19.20 PE=4 SV=1 CANONICAL=Q9FHI3-1" }, "locus": { "chromosome": "5", "start_pos": 18454188, "end_pos": 18457303, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45530.1", "url": "https://www.ensemblgenomes.org/id/AT5G45530.1" }, { "database": "Ensembl Peptide", "id": "AT5G45530.1", "url": "https://www.ensemblgenomes.org/id/AT5G45530.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI3", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHI3", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45530", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI3" }, { "id": "PF13968", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4220", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 426, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 400, "end_pos": 402 }, { "start_pos": 472, "end_pos": 474 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FHI4-1", "uniprot_ac": "Q9FHI4", "uniprot_id": "Q9FHI4_ARATH", "mass": { "chemical_mass": 132582.0, "monoisotopic_mass": 132582.0 }, "refseq": { "ac": "NP_001318743", "name": "Leucine-rich repeat (LRR) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318743" }, "gene_names": [ { "name": "MFC19.19", "type": "recommended", "evidence": [ { "id": "Q9FHI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4" } ] }, { "name": "MFC19.19", "type": "synonym", "evidence": [ { "id": "NP_001318743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318743" } ] }, { "name": "MFC19_19", "type": "synonym", "evidence": [ { "id": "NP_001318743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318743" }, { "id": "Q9FHI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat (LRR) family protein", "type": "synonym", "evidence": [ { "id": "NP_001318743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318743" }, { "id": "Q9FHI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHI4", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFC19.19", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4", "locus": {} } ], "crossref": [ { "id": "AT5G45520", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45520", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834588", "url": "https://www.ncbi.nlm.nih.gov/gene/834588", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45520", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45520", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQRGEKQ", "url": "https://omabrowser.org/oma/group/HQRGEKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23155:SF1076", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23155:SF1076", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001318743", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318743", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45520", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45520", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHI4", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHI4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTKECDIYKIINILSQLDSDLKKIPVSDKVISHKEQQGEPSEEKRSWWVRVRGSLKRIGKAKKEAFNNASDSGGSQGGSRRSVQNIEEDQKNEDLEIRKLQNDIRQMIAAFKNLTQFQTDMSKNLERDLRSTKLIAILQKKNSFGSRSHVVKEIRRKVSALKCQIPSLLHKQSSRKISITDSQTAEENDEISETGIDIYLPGLHFSEKFKTSSAFEEVVEKFQGLDDFTQKLCLLSFAVFPENREVKRTMLMYWWIGEGFISCDDSENLVTRILDSFSDKKLLEPVEDERKLLPSSYKMEPHVHSAVIYLAKEMDLFELYNKNGKLIMKKSSKKKVCLVKGSSLLRDAKTSVMEPKTLQTVFNSSERYPDFTFKWFPLMDSLRVLYLGRWEQTAKRHIEVESTEFLKNMKSLKNLRLASFQGISRIERLENSICALPELVILDLKACYNLEVLPSDIGLFEKLIYLDVSECYMLDRMPKGIAKLSRLQVLKGFVISESDHENNCAVKHLVNLRKLSITVNKYSFKVESLMESLTGLQGLESLKIAWGACEEPNEAVESRETTNEKKENQGGLATDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGKKHDEGKEERSLKSDEVVEEEKKTSPSEEATEKFQNKPGDQKGKSNVEGDGDKGKADLEEEKKQDEVEAEKSKSDEIVEGEKKPDDKSKVEKKGDGDKENADLDEGKKRDEVEAKKSESGKVVEGDGKESPPQESIDTIQNMTDDQTKVEKEGDRDKGKVDPEEGKKHDEVEGGIWKSDNGVEGVDKASPSRESTDAIENKPDDHQRGDKQEEKGDGEKEKVNLEEWKKHDEIKEESSKQDNVTGGDVKKSPPKESKDTMESKRDDQKENSKVQEKGDVDKGKAADLDEGKKENDVKAESSKSDKVIEGDEEKNPPQKSKDIIQSKPDDHREISKVQEKVDGEKNGDDLKKLDGGGEAKTQKSRKTTKFGKNVSDHPKRDNTMAEDIHETQSPSRKSKSSKAKWLTGRGNQTKKWGIGWQEDPVVDDTYTLPSNLKKLELECFPETKPPSWLNPKDLKNLKKLSIKGGKLSRIGDESRITEDKWDVEILRLKYLHEFKVEWRDLQTLFPKMTLLEKYKCPKIAFCPTDGNGVWTSSPNM", "length": 1167, "header": "tr|Q9FHI4-1|Q9FHI4_ARATH Isoform 1 of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.19 PE=1 SV=1 CANONICAL=Q9FHI4-1" }, "isoforms": [ { "isoform_ac": "Q9FHI4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHI4/entry#Q9FHI4-1", "sequence": { "sequence": "MSTKECDIYKIINILSQLDSDLKKIPVSDKVISHKEQQGEPSEEKRSWWVRVRGSLKRIGKAKKEAFNNASDSGGSQGGSRRSVQNIEEDQKNEDLEIRKLQNDIRQMIAAFKNLTQFQTDMSKNLERDLRSTKLIAILQKKNSFGSRSHVVKEIRRKVSALKCQIPSLLHKQSSRKISITDSQTAEENDEISETGIDIYLPGLHFSEKFKTSSAFEEVVEKFQGLDDFTQKLCLLSFAVFPENREVKRTMLMYWWIGEGFISCDDSENLVTRILDSFSDKKLLEPVEDERKLLPSSYKMEPHVHSAVIYLAKEMDLFELYNKNGKLIMKKSSKKKVCLVKGSSLLRDAKTSVMEPKTLQTVFNSSERYPDFTFKWFPLMDSLRVLYLGRWEQTAKRHIEVESTEFLKNMKSLKNLRLASFQGISRIERLENSICALPELVILDLKACYNLEVLPSDIGLFEKLIYLDVSECYMLDRMPKGIAKLSRLQVLKGFVISESDHENNCAVKHLVNLRKLSITVNKYSFKVESLMESLTGLQGLESLKIAWGACEEPNEAVESRETTNEKKENQGGLATDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGKKHDEGKEERSLKSDEVVEEEKKTSPSEEATEKFQNKPGDQKGKSNVEGDGDKGKADLEEEKKQDEVEAEKSKSDEIVEGEKKPDDKSKVEKKGDGDKENADLDEGKKRDEVEAKKSESGKVVEGDGKESPPQESIDTIQNMTDDQTKVEKEGDRDKGKVDPEEGKKHDEVEGGIWKSDNGVEGVDKASPSRESTDAIENKPDDHQRGDKQEEKGDGEKEKVNLEEWKKHDEIKEESSKQDNVTGGDVKKSPPKESKDTMESKRDDQKENSKVQEKGDVDKGKAADLDEGKKENDVKAESSKSDKVIEGDEEKNPPQKSKDIIQSKPDDHREISKVQEKVDGEKNGDDLKKLDGGGEAKTQKSRKTTKFGKNVSDHPKRDNTMAEDIHETQSPSRKSKSSKAKWLTGRGNQTKKWGIGWQEDPVVDDTYTLPSNLKKLELECFPETKPPSWLNPKDLKNLKKLSIKGGKLSRIGDESRITEDKWDVEILRLKYLHEFKVEWRDLQTLFPKMTLLEKYKCPKIAFCPTDGNGVWTSSPNM", "length": 1167, "header": "tr|Q9FHI4-1|Q9FHI4_ARATH Isoform 1 of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.19 PE=1 SV=1 CANONICAL=Q9FHI4-1" }, "locus": { "chromosome": "5", "start_pos": 18449476, "end_pos": 18453683, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45520.1", "url": "https://www.ensemblgenomes.org/id/AT5G45520.1" }, { "database": "Ensembl Peptide", "id": "AT5G45520.1", "url": "https://www.ensemblgenomes.org/id/AT5G45520.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1105, "end_pos": 1105, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser1105" }, { "start_pos": 1145, "end_pos": 1145, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI4" } ], "site_lbl": "Tyr1145" }, { "start_pos": 817, "end_pos": 817, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser817" }, { "start_pos": 872, "end_pos": 872, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHI4" } ], "site_lbl": "Thr872" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of 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"https://www.uniprot.org/uniprotkb/Q9FHJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFC19.13", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0", "locus": {} } ], "crossref": [ { "id": "AT5G45460", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45460", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834582", "url": "https://www.ncbi.nlm.nih.gov/gene/834582", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G45460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIVEVIN", "url": "https://omabrowser.org/oma/group/CIVEVIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31325", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31325", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13968", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199359", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199359", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHJ0", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHJ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDVIPKHIKDAWDRWNIRGTIFLSLTLQAFLICFSPLRKRTPRRHLIIVIWSSYLLADWSANFAVGLISKNQGKDLKPDDPPQDKKLMALWAPFLLLHLGGPDTITAFALEDNALWLRNVFGLVFQAIAGVYVVLQSLPNSLWVTILLVFISGTIKYLERTTALYSASLDKFRDSMIQGPDPGPNYAKLMEEYKAKKEAKLPTKIILIDEPDKEHRPKKLEHPSLASETKRKELTHLEIAQYAYKFFNTFKGLVVNLIFSFRERDQSIEIFQNLEDPEEALRIIEIELGFLYDALFTKNAVLHTVLGTVSRVVASGSLVAAFIIFHKISNKGRDFHGADVVITYILFAVGLVLDFISILLFLFSDWTCAALSSLKDDPDEPLSWKDRFFNCLLEFRKLRWKMQECHNKGEHKCTKEGEKPCIKEGDDKCSMVHVHHMLTTPFFFRRWCGSINVFNFLAYATKKRQKRIHDAGDEFRSLWIIIAFPFKIINLIIQKVFGCIVEVINNVHRWIRSIVNTLSRNHPWARCTIYPLYILFLFHIPNFIKYLWNVLIEFLGIPDALDLVEKTLFVHGEPMTKELWKFIFEELKNKSKYGDSPENAKRISLARGEWALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNHLRLHDVSPDLATQSDVRGCWNWEDQIQRHIGGN", "length": 703, "header": "tr|Q9FHJ0-1|Q9FHJ0_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.13 PE=4 SV=1 CANONICAL=Q9FHJ0-1" }, "isoforms": [ { "isoform_ac": "Q9FHJ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0/entry#Q9FHJ0-1", "sequence": { "sequence": "MVDVIPKHIKDAWDRWNIRGTIFLSLTLQAFLICFSPLRKRTPRRHLIIVIWSSYLLADWSANFAVGLISKNQGKDLKPDDPPQDKKLMALWAPFLLLHLGGPDTITAFALEDNALWLRNVFGLVFQAIAGVYVVLQSLPNSLWVTILLVFISGTIKYLERTTALYSASLDKFRDSMIQGPDPGPNYAKLMEEYKAKKEAKLPTKIILIDEPDKEHRPKKLEHPSLASETKRKELTHLEIAQYAYKFFNTFKGLVVNLIFSFRERDQSIEIFQNLEDPEEALRIIEIELGFLYDALFTKNAVLHTVLGTVSRVVASGSLVAAFIIFHKISNKGRDFHGADVVITYILFAVGLVLDFISILLFLFSDWTCAALSSLKDDPDEPLSWKDRFFNCLLEFRKLRWKMQECHNKGEHKCTKEGEKPCIKEGDDKCSMVHVHHMLTTPFFFRRWCGSINVFNFLAYATKKRQKRIHDAGDEFRSLWIIIAFPFKIINLIIQKVFGCIVEVINNVHRWIRSIVNTLSRNHPWARCTIYPLYILFLFHIPNFIKYLWNVLIEFLGIPDALDLVEKTLFVHGEPMTKELWKFIFEELKNKSKYGDSPENAKRISLARGEWALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNHLRLHDVSPDLATQSDVRGCWNWEDQIQRHIGGN", "length": 703, "header": "tr|Q9FHJ0-1|Q9FHJ0_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MFC19.13 PE=4 SV=1 CANONICAL=Q9FHJ0-1" }, "locus": { "chromosome": "5", "start_pos": 18416614, "end_pos": 18419532, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45460.1", "url": "https://www.ensemblgenomes.org/id/AT5G45460.1" }, { "database": "Ensembl Peptide", "id": "AT5G45460.1", "url": "https://www.ensemblgenomes.org/id/AT5G45460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHJ0", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHJ0", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FHJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ0" }, { "id": "PF13968", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4220", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 458, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 590, "end_pos": 592 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"uniprot_id": "Q9FHJ1_ARATH", "mass": { "chemical_mass": 23556.0, "monoisotopic_mass": 23556.0 }, "refseq": { "ac": "NP_199358", "name": "Oligopeptide transporter OPT superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199358" }, "gene_names": [ { "name": "MFC19.12", "type": "recommended", "evidence": [ { "id": "Q9FHJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1" } ] }, { "name": "MFC19.12", "type": "synonym", "evidence": [ { "id": "NP_199358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199358" } ] }, { "name": "MFC19_12", "type": "synonym", "evidence": [ { "id": "NP_199358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199358" }, { "id": "Q9FHJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1" } ] } ], "protein_names": [ { "name": "Oligopeptide transporter OPT superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_199358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199358" }, { "id": "Q9FHJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MFC19.12", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1", "locus": {} } ], "crossref": [ { "id": "AT5G45450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G45450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834581", "url": "https://www.ncbi.nlm.nih.gov/gene/834581", "database": "GeneID", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF03169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199358", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199358", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G45450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G45450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHJ1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAGLATCGFMMNIVSRASDLTQDFKTGYLTLSSPKSMFVSQVIGTAMGCVVSPCVFWLFYKAFDDLGLPNTEYHTPFATVYRSMAKLGVPRECLVLCYVFFGVAILVNIVKDSLHSKWGRFIPLSMAMAIPFFLGLYFAIEMCVGSLILFIWERVDAAKAEAFGTAVASCLICRDGTWSKPSSVLAVAAVNPPVCMKFLSSQTNSKVDNILQGST", "length": 216, "header": "tr|Q9FHJ1-1|Q9FHJ1_ARATH Isoform 1 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"Ensembl Peptide", "id": "AT5G23400.1", "url": "https://www.ensemblgenomes.org/id/AT5G23400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, 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"title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHL8", "url": "https://www.uniprot.org/uniprotkb/Q9FHL8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G23400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FHL8", "url": "https://www.uniprot.org/uniprotkb/Q9FHL8" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "Q9FHL8", "url": "https://www.uniprot.org/uniprotkb/Q9FHL8" } ], "pmid": "" }, { "name": "plant-type cell wall", "id": "GO:0009505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009505", "evidence": [ { "database": "UniProtKB", "id": "Q9FHL8", "url": "https://www.uniprot.org/uniprotkb/Q9FHL8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FHL8", "url": "https://www.uniprot.org/uniprotkb/Q9FHL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, 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"evidence": [ { "id": "Q9FHL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9" } ] }, { "name": "K17N15_20", "type": "synonym", "evidence": [ { "id": "Q9FHL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9FHL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FHL9", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9", "locus": {} } ], "crossref": [ { "id": "AT5G51650", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G51650", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835239", "url": "https://www.ncbi.nlm.nih.gov/gene/835239", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G51650", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51650", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT5G51650", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G51650", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHL9", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHL9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVIVLENKGMPYKAPKPRFLFEDFWHPLVAKGVQRVVQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAIHHFNLERDLINYSKWTVSAPGNENDYFDTKILEEEVGIIWDLKEKKKDKKKEEEEDDFGSKIKLTTADLRKLANDKQQLKKLLREFEKKNDEFIEKLMKEKKLEKNKRKKGKKGKTFIVNRE", "length": 206, "header": "tr|Q9FHL9-1|Q9FHL9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHL9-1" }, "isoforms": [ { "isoform_ac": "Q9FHL9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHL9/entry#Q9FHL9-1", "sequence": { "sequence": "MTVIVLENKGMPYKAPKPRFLFEDFWHPLVAKGVQRVVQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAIHHFNLERDLINYSKWTVSAPGNENDYFDTKILEEEVGIIWDLKEKKKDKKKEEEEDDFGSKIKLTTADLRKLANDKQQLKKLLREFEKKNDEFIEKLMKEKKLEKNKRKKGKKGKTFIVNRE", "length": 206, "header": "tr|Q9FHL9-1|Q9FHL9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FHL9-1" }, "locus": { "chromosome": "5", "start_pos": 20978203, "end_pos": 20979249, "strand": "+", "evidence": [ { "database": "Ensembl 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Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHP0", "url": "https://www.uniprot.org/uniprotkb/Q9FHP0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FHP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHP0" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FHP0", "url": "https://www.uniprot.org/uniprotkb/Q9FHP0" }, { "database": "iPTMnet", "id": "Q9FHP0", "url": 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K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , 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"database": "Ensembl Peptide", "id": "AT5G37650.1", "url": "https://www.ensemblgenomes.org/id/AT5G37650.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 209, "end_pos": 209, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHQ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHQ5" } ], "site_lbl": "Ser209" }, { "start_pos": 479, "end_pos": 479, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FHQ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHQ5" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser479" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", 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Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHQ5", "url": "https://www.uniprot.org/uniprotkb/Q9FHQ5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHQ5", "url": 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"MDQGSGKTMISVLLVHHVDKKNVVWIQSGSDFVDLFYSFLTMPLGTIVRLLEHHGRLKEKVSIGCFNNLYKSLVDMSIDNFRNEACKQMLVYPKSVKERQCRMLKINIDDTEETKYFMCPKSLQSPSCREFFSNFNTSRCRCGNLMNKESSSPEGEESVSRLGGSCDDDGVFVHGDGNMAFMLSDDLTIENFSWDLPRKRVKDLGCVNVFDKLGEGEPEVGFREAMTLLRSLFTSETPLTATFFPFHSSPYPSKRAYKASSPCDSVLGQVLSFKVYLSKEDNKKVIYAECGEGFIDLLCMFLVLPLGYICQISSRDGDDDDGLGCIGNLFRSFKGLSGDEITIPWYYNCRKNLLGITVQKPPSLFNCISYLEDNGMAGDCEDSRLKKVRPMDPKAEISGQSRSSSGGFVKSNKKFLVTDDLIITPLNSDLTMRELKKLKISFDEVNIKEITIGKTEATNLLKASFVTSFALTNGLSDLLSKKLEG", "length": 485, "header": "tr|Q9FHT3-1|Q9FHT3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MNJ8.11 PE=1 SV=1 CANONICAL=Q9FHT3-1" }, "isoforms": [ { "isoform_ac": "Q9FHT3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHT3/entry#Q9FHT3-1", "sequence": { "sequence": "MDQGSGKTMISVLLVHHVDKKNVVWIQSGSDFVDLFYSFLTMPLGTIVRLLEHHGRLKEKVSIGCFNNLYKSLVDMSIDNFRNEACKQMLVYPKSVKERQCRMLKINIDDTEETKYFMCPKSLQSPSCREFFSNFNTSRCRCGNLMNKESSSPEGEESVSRLGGSCDDDGVFVHGDGNMAFMLSDDLTIENFSWDLPRKRVKDLGCVNVFDKLGEGEPEVGFREAMTLLRSLFTSETPLTATFFPFHSSPYPSKRAYKASSPCDSVLGQVLSFKVYLSKEDNKKVIYAECGEGFIDLLCMFLVLPLGYICQISSRDGDDDDGLGCIGNLFRSFKGLSGDEITIPWYYNCRKNLLGITVQKPPSLFNCISYLEDNGMAGDCEDSRLKKVRPMDPKAEISGQSRSSSGGFVKSNKKFLVTDDLIITPLNSDLTMRELKKLKISFDEVNIKEITIGKTEATNLLKASFVTSFALTNGLSDLLSKKLEG", "length": 485, "header": "tr|Q9FHT3-1|Q9FHT3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MNJ8.11 PE=1 SV=1 CANONICAL=Q9FHT3-1" }, "locus": { "chromosome": "5", "start_pos": 14777931, "end_pos": 14779717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G37320.1", "url": "https://www.ensemblgenomes.org/id/AT5G37320.1" }, { "database": "Ensembl Peptide", "id": "AT5G37320.1", "url": "https://www.ensemblgenomes.org/id/AT5G37320.1" } ] } } ], 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Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHT3", "url": "https://www.uniprot.org/uniprotkb/Q9FHT3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", 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Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FHT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHT3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT5G37320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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"MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEKTGISK", "length": 67, "header": "tr|Q9FHZ4-1|Q9FHZ4_ARATH Isoform 1 of Late embryogenesis abundant protein (LEA) family protein OS=Arabidopsis thaliana OX=3702 GN=MGN6.21 PE=1 SV=1 CANONICAL=Q9FHZ4-1" }, "isoforms": [ { "isoform_ac": "Q9FHZ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ4/entry#Q9FHZ4-1", "sequence": { "sequence": "MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEKTGISK", "length": 67, "header": "tr|Q9FHZ4-1|Q9FHZ4_ARATH Isoform 1 of Late embryogenesis abundant protein (LEA) family protein OS=Arabidopsis thaliana OX=3702 GN=MGN6.21 PE=1 SV=1 CANONICAL=Q9FHZ4-1" }, "locus": { "chromosome": "5", "start_pos": 21853348, "end_pos": 21854117, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53820.1", "url": "https://www.ensemblgenomes.org/id/AT5G53820.1" }, { "database": "Ensembl Peptide", "id": "AT5G53820.1", "url": "https://www.ensemblgenomes.org/id/AT5G53820.1" } ] } 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Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FHZ4", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9FHZ4", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ4" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9FHZ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHZ4" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FHZ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FHZ4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FHZ4", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ4" } ], 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"Protein Classification", "Other" ] }, { "id": "PF08100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200192", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200192", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G53810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G53810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FHZ5", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FHZ5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FHZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FI36-1", "uniprot_ac": "Q9FI36", "uniprot_id": "Q9FI36_ARATH", "mass": { "chemical_mass": 39846.0, "monoisotopic_mass": 39846.0 }, "refseq": { "ac": "NP_568689", "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568689" }, "gene_names": [ { "name": "MDN11.10", "type": "recommended", "evidence": [ { "id": "Q9FI36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ] }, { "name": "MDN11.10", "type": "synonym", "evidence": [ { "id": "NP_568689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568689" } ] }, { "name": "MDN11_10", "type": "synonym", "evidence": [ { "id": "NP_568689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568689" }, { "id": "Q9FI36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ] } ], "protein_names": [ { "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_568689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568689" }, { "id": "Q9FI36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MDN11.10", "url": "https://www.uniprot.org/uniprotkb/Q9FI36", "locus": {} } ], "crossref": [ { "id": "834853", "url": "https://www.ncbi.nlm.nih.gov/gene/834853", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G48020", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48020", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQPDPKC", "url": "https://omabrowser.org/oma/group/HQPDPKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10209", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10209", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10209:SF874", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10209:SF874", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_568689", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568689", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G48020", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G48020", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FI36-1", "url": "https://www.uniprot.org/uniprotkb/Q9FI36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELPVVDLSSYLDFSGDELGSDLLESCRQVSRILKETGALIVKDPRCCAQDNDRFIDMMENYFEKPDDFKRLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTMPNEYKPHIPKGPDHKWRYMWRVGPRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMISAVEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTIHGRSRFPGLYIWLRNGEKVAVKVPVGCLLIQAGKQIEWLTAGECIAGMHEVVVTSKTKDAITLAKEQNRSLWRVSSTLFAHIASDAELKPLGHFAESSLASKYPAIPAGEYVEQELSVINLKGNKGSS", "length": 355, "header": "tr|Q9FI36-1|Q9FI36_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MDN11.10 PE=1 SV=1 CANONICAL=Q9FI36-1" }, "isoforms": [ { "isoform_ac": "Q9FI36-1", "url": "https://www.uniprot.org/uniprotkb/Q9FI36/entry#Q9FI36-1", "sequence": { "sequence": "MELPVVDLSSYLDFSGDELGSDLLESCRQVSRILKETGALIVKDPRCCAQDNDRFIDMMENYFEKPDDFKRLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTMPNEYKPHIPKGPDHKWRYMWRVGPRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMISAVEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTIHGRSRFPGLYIWLRNGEKVAVKVPVGCLLIQAGKQIEWLTAGECIAGMHEVVVTSKTKDAITLAKEQNRSLWRVSSTLFAHIASDAELKPLGHFAESSLASKYPAIPAGEYVEQELSVINLKGNKGSS", "length": 355, "header": "tr|Q9FI36-1|Q9FI36_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MDN11.10 PE=1 SV=1 CANONICAL=Q9FI36-1" }, "locus": { "chromosome": "5", "start_pos": 19462516, "end_pos": 19464971, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48020.1", "url": "https://www.ensemblgenomes.org/id/AT5G48020.1" }, { "database": "Ensembl Peptide", "id": "AT5G48020.1", "url": "https://www.ensemblgenomes.org/id/AT5G48020.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G48020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48020", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q55GT3-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MESGPVVIDVSRFLADPTSAEALEDCKKLVKTLQETSCLVIKHPKVNEEDNSRFLDMMEKYYEQPTEELMKDVHPEWSYQLGATPEFTEEPRDHSEVITKLLPQYAAHAPKGADPKWRFFWRIGDRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSSIETVSEMIATGYNLPKDSITNLMKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFNLLTIHGKSRYPGLYIWLRDGTRVPVKVPNGCLLLQAGKQLEWITGGDILAGFHEVVVTEDTLKVMEKSKDEGKSLWRISSTLFGHVASDKNLTLLEPFNNPQNLEKYPNILAGKQSEAELEMIKLSKK", "length": 345 }, "evidence": [ { "id": "Q9FI36", "url": "https://omabrowser.org/oma/group/Q9FI36/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "Q9FI36", "url": "https://www.uniprot.org/uniprotkb/Q9FI36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 295, "end_pos": 297 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FI45-1", "uniprot_ac": "Q9FI45", "uniprot_id": "Q9FI45_ARATH", "mass": { "chemical_mass": 35188.0, "monoisotopic_mass": 35188.0 }, "refseq": {}, "gene_names": [ { "name": "K3K7.21", "type": "synonym", "evidence": [ { "id": "Q9FI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI45" } ] }, { "name": "K3K7_21", "type": "synonym", "evidence": [ { "id": "Q9FI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI45" } ] } ], "protein_names": [ { "name": "Short-chain dehydrogenase/reductase", "type": "recommended", "evidence": [ { "id": "Q9FI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI45/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.-", "type": "synonym", "evidence": [ { "id": "Q9FI45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FI45/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FI45", "url": "https://www.uniprot.org/uniprotkb/Q9FI45" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FI45", "locus": {} } ], "crossref": [ { "id": "cd05324", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05324", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835176", "url": "https://www.ncbi.nlm.nih.gov/gene/835176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G51030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QKKFRCE", "url": "https://omabrowser.org/oma/group/QKKFRCE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FI45", "url": "https://www.orthodb.org/?gene=Q9FI45", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43490:SF99", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43490:SF99", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G51030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G51030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FI45", "url": "https://www.uniprot.org/uniprotkb/Q9FI45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FI45-1", "url": "https://www.uniprot.org/uniprotkb/Q9FI45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGSKEKSKEKRDKRLQEISLLRTIPYSDHQRWWTSETVAVVTGANRGIGFEMVRQLAGHGLTVILTSRDENVGVEAAKILQEGGFNVDFHRLDILDSSSIQEFCEWIKEKYGFIDVLINNAGVNYNVGSDNSVEFSHMVISTNYYGTKNIINAMIPLMRHACQGARIVNVTSRLGRLKGRHSKLENEDVRAKLMDVDSLTEEIVDKTVSEFLKQVEEGTWESGGWPHSFTDYSVSKMAVNAYTRVLAKELSERPEGEKIYANCFCPGWVKTAMTGYAGNVSAEDGADTGVWLALLPDQAITGKFFAERREISF", "length": 314, "header": "tr|Q9FI45-1|Q9FI45_ARATH Isoform 1 of Short-chain dehydrogenase/reductase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FI45-1" }, "isoforms": [ { "isoform_ac": "Q9FI45-1", "url": "https://www.uniprot.org/uniprotkb/Q9FI45/entry#Q9FI45-1", "sequence": { "sequence": "MVGSKEKSKEKRDKRLQEISLLRTIPYSDHQRWWTSETVAVVTGANRGIGFEMVRQLAGHGLTVILTSRDENVGVEAAKILQEGGFNVDFHRLDILDSSSIQEFCEWIKEKYGFIDVLINNAGVNYNVGSDNSVEFSHMVISTNYYGTKNIINAMIPLMRHACQGARIVNVTSRLGRLKGRHSKLENEDVRAKLMDVDSLTEEIVDKTVSEFLKQVEEGTWESGGWPHSFTDYSVSKMAVNAYTRVLAKELSERPEGEKIYANCFCPGWVKTAMTGYAGNVSAEDGADTGVWLALLPDQAITGKFFAERREISF", "length": 314, "header": "tr|Q9FI45-1|Q9FI45_ARATH Isoform 1 of Short-chain dehydrogenase/reductase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FI45-1" }, "locus": { "chromosome": "5", "start_pos": 20747680, "end_pos": 20749506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51030.1", "url": "https://www.ensemblgenomes.org/id/AT5G51030.1" }, { "database": "Ensembl Peptide", "id": "AT5G51030.1", "url": "https://www.ensemblgenomes.org/id/AT5G51030.1" } ] } } ], "glycosylation": [], "phosphorylation": [ 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"https://www.uniprot.org/uniprotkb/Q9FI45" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FI45", "url": "https://www.uniprot.org/uniprotkb/Q9FI45" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G51030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51030", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B2GV72-1", "protein_name": "Carbonyl reductase [NADPH] 3", "gene_name": "Cbr3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/Q9FI47", "locus": {} } ], "crossref": [ { "id": "cd00730", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00730", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835174", "url": "https://www.ncbi.nlm.nih.gov/gene/835174", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FI47", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FI47*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR024934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G51010", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FRAYEPK", "url": 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"https://www.ensemblgenomes.org/id/AT5G51010.1" }, { "database": "Ensembl Peptide", "id": "AT5G51010.1", "url": "https://www.ensemblgenomes.org/id/AT5G51010.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, 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A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FI59", "url": "https://www.uniprot.org/uniprotkb/Q9FI59" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a 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Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIA5", "url": "https://www.uniprot.org/uniprotkb/Q9FIA5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FIA5", "url": "https://www.uniprot.org/uniprotkb/Q9FIA5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FID2", "url": "https://www.uniprot.org/uniprotkb/Q9FID2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR041469", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041469", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G59110", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59110", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SAYLIWD", "url": "https://omabrowser.org/oma/group/SAYLIWD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10795", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10795", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17766", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17766", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_568897", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_568897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G59110", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G59110", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIG3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRATYGAGHVDPIAATNPGLVYEMDKADHIAFLCGLNYTADTLALIAGETITCTKENKTLPRNLNYPSMSAQLRRSESSLTVTFNRTVTNVGTPNSTYKSKVVLNQGSKLNVKVTPSVLSFKTVSEKKSFTVTVTGSDSDPKLPSSANLIWSDGTHNVRSPIVIYIDGAY", "length": 172, "header": "tr|Q9FIG3-1|Q9FIG3_ARATH Isoform 1 of Subtilisin-like serine protease-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FIG3-1" }, "isoforms": [ { "isoform_ac": "Q9FIG3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3/entry#Q9FIG3-1", "sequence": { "sequence": "MGKRATYGAGHVDPIAATNPGLVYEMDKADHIAFLCGLNYTADTLALIAGETITCTKENKTLPRNLNYPSMSAQLRRSESSLTVTFNRTVTNVGTPNSTYKSKVVLNQGSKLNVKVTPSVLSFKTVSEKKSFTVTVTGSDSDPKLPSSANLIWSDGTHNVRSPIVIYIDGAY", "length": 172, "header": "tr|Q9FIG3-1|Q9FIG3_ARATH Isoform 1 of Subtilisin-like serine protease-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FIG3-1" }, "locus": { "chromosome": "5", "start_pos": 23863530, "end_pos": 23864048, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G59110.1", "url": "https://www.ensemblgenomes.org/id/AT5G59110.1" }, { "database": "Ensembl Peptide", "id": "AT5G59110.1", "url": "https://www.ensemblgenomes.org/id/AT5G59110.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G59110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "Q9FIG3", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FIG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIG3" }, { "id": "PF17766", "database": "Pfam", "url": 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"MTIMSDLPRDLLAEILSRVPLTSLRAVRLTCKKWNDLSKDRSFLKKQIVETKKKQLESKEIEVIMMRNFRVYLTSIDIHNNVDPSFTPKGTLISLSDDANHHQVDNVSRVFHCDGLLLCITKDLHYRLVVWNPYFGQTRWIQPRNSYHRKDNYALGYDEKKNHKILRLKDNYYAPRERICEFELYSFESNSWKVVLDVSPDWYIPSYNRGLSLKGNTYWYATEKHVNVDFLICFDFTTEKFGPRLPLPFNATESPTYEDVVTLSSVGEEQLAVLFQSEYTLMMEIWVTSKVESTEVLWNKLFLEVDLIAISSHFQFLAEAGSFFIDQKKNVVVVFDKDMDEATDRDMAYVVGKNGYFKKVDIGEEAYTSCFPLVCSYVPSSEQIRQLT", "length": 388, "header": "sp|Q9FIH1-1|FB281_ARATH Isoform 1 of F-box protein At5g42460 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FIH1-1" }, "locus": { "chromosome": "5", "start_pos": 16979773, "end_pos": 16981195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42460.1", "url": "https://www.ensemblgenomes.org/id/AT5G42460.1" }, { "database": "Ensembl Peptide", "id": "AT5G42460.1", "url": "https://www.ensemblgenomes.org/id/AT5G42460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Asamizu E, Sato S, Kaneko T, Nakamura Y, Kotani H, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FIH1", "url": "https://www.uniprot.org/uniprotkb/Q9FIH1" } ], "reference": [ { "type": "PubMed", "id": "10048488", "url": "https://glygen.org/publication/PubMed/10048488" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9FIH1", "url": "https://www.uniprot.org/uniprotkb/Q9FIH1" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FIH1", "url": "https://www.uniprot.org/uniprotkb/Q9FIH1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FIH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 388, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FIH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FIH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FIH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIH1" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 47, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 250, "end_pos": 252 } ] }, 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"publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FIH4-1", "uniprot_ac": "Q9FIH4", "uniprot_id": "FB280_ARATH", "mass": { "chemical_mass": 45732.0, "monoisotopic_mass": 45732.0 }, "refseq": {}, "gene_names": [ { "name": "MDH9.12", "type": "synonym", "evidence": [ { "id": "Q9FIH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4" } ] } ], "protein_names": [ { "name": "Putative F-box protein At5g42430", "type": "recommended", "evidence": [ { "id": "Q9FIH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FIH4", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4", "locus": {} } ], "crossref": [ { "id": "Q9FIH4", "url": "https://alphafold.ebi.ac.uk/entry/Q9FIH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G42430", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G42430", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22157", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22157", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "834249", "url": "https://www.ncbi.nlm.nih.gov/gene/834249", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G42430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YLCSNER", "url": "https://omabrowser.org/oma/group/YLCSNER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111:SF130", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111:SF130", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FIH4", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FIH4", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G42430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G42430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIH4", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIH4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGEENSDSIPIDLILEILSRLPAKSITRFHCVSKLWGSMLCRPYFNELFLTISSARPRLLFAFSKHGEWRFFSSPQPQNPYGKSSFVATADFHTKFSQNLNICNYTSGLVYFSAMWITKADVICNPSTGHYAMLPKLLLTYGETRSFFLFDPVGKQFKVLLMNKINNNETKDIHILTLGTRKVRWRKIQQCPLIHIVSHEWICINGALYYIAYNIDDFLGYIVCFDVRSEKFKCLNLNQDCFSERSTKLIYYKGKLGVVNLKYAHGGGFPLKLCMWVLEDVEKQEWTTSVYTLRDEDRVVKVYYDLFIVGITATGEIVLAKKKVCKPFYVFYFNLERNTLLSVEIQGFGEYQSCCSVHAFVDHVEDLNVYAFVEHMKKTYEYDATSISPSEQKL", "length": 395, "header": "sp|Q9FIH4-1|FB280_ARATH Isoform 1 of Putative F-box protein At5g42430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIH4-1" }, "isoforms": [ { "isoform_ac": "Q9FIH4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIH4/entry#Q9FIH4-1", "sequence": { "sequence": "MNGEENSDSIPIDLILEILSRLPAKSITRFHCVSKLWGSMLCRPYFNELFLTISSARPRLLFAFSKHGEWRFFSSPQPQNPYGKSSFVATADFHTKFSQNLNICNYTSGLVYFSAMWITKADVICNPSTGHYAMLPKLLLTYGETRSFFLFDPVGKQFKVLLMNKINNNETKDIHILTLGTRKVRWRKIQQCPLIHIVSHEWICINGALYYIAYNIDDFLGYIVCFDVRSEKFKCLNLNQDCFSERSTKLIYYKGKLGVVNLKYAHGGGFPLKLCMWVLEDVEKQEWTTSVYTLRDEDRVVKVYYDLFIVGITATGEIVLAKKKVCKPFYVFYFNLERNTLLSVEIQGFGEYQSCCSVHAFVDHVEDLNVYAFVEHMKKTYEYDATSISPSEQKL", "length": 395, "header": "sp|Q9FIH4-1|FB280_ARATH Isoform 1 of Putative F-box protein At5g42430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIH4-1" }, "locus": { "chromosome": "5", "start_pos": 16971312, "end_pos": 16972499, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42430.1", "url": "https://www.ensemblgenomes.org/id/AT5G42430.1" }, { "database": "Ensembl Peptide", "id": "AT5G42430.1", "url": "https://www.ensemblgenomes.org/id/AT5G42430.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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"", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FIH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 395, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FIH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FIH4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FII8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FII8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FII8", "url": 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"Protein", "Organism-specific" ] }, { "id": "834843", "url": "https://www.ncbi.nlm.nih.gov/gene/834843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008480", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008480", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47920", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HMADLFI", "url": "https://omabrowser.org/oma/group/HMADLFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33450:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33450:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05553", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05553", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199603", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199603", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47920", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47920", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FII9", "url": "https://www.uniprot.org/uniprotkb/Q9FII9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FII9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FII9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKATALMKHIVALLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSISNKIHHLLGHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESDKYPDLRHTLFEGEEDFGDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQKLLSFKRYQEMLARGT", "length": 187, "header": "tr|Q9FII9-1|Q9FII9_ARATH Isoform 1 of Transcription elongation factor OS=Arabidopsis thaliana OX=3702 GN=MCA23.26 PE=4 SV=1 CANONICAL=Q9FII9-1" }, "isoforms": [ { "isoform_ac": "Q9FII9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FII9/entry#Q9FII9-1", "sequence": { "sequence": "MKKATALMKHIVALLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSISNKIHHLLGHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESDKYPDLRHTLFEGEEDFGDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQKLLSFKRYQEMLARGT", "length": 187, "header": "tr|Q9FII9-1|Q9FII9_ARATH Isoform 1 of Transcription elongation factor OS=Arabidopsis thaliana OX=3702 GN=MCA23.26 PE=4 SV=1 CANONICAL=Q9FII9-1" }, "locus": { "chromosome": "5", "start_pos": 19403171, "end_pos": 19404147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G47920.1", "url": "https://www.ensemblgenomes.org/id/AT5G47920.1" }, { "database": "Ensembl Peptide", "id": "AT5G47920.1", "url": "https://www.ensemblgenomes.org/id/AT5G47920.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 85, "end_pos": 85, 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"type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FII9", "url": "https://www.uniprot.org/uniprotkb/Q9FII9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G47920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47920", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "Q9FII9", "url": "https://www.uniprot.org/uniprotkb/Q9FII9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 85 ], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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}, { "id": "Q9FIJ5", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FIJ5*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR010765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G47860", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G47860", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIESNSG", "url": "https://omabrowser.org/oma/group/WIESNSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34127:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34127:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07082", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07082", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199597", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199597", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G47860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G47860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIJ5", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIJ5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIL6", "url": "https://www.uniprot.org/uniprotkb/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q9FIL6", "url": "https://www.uniprot.org/uniprotkb/Q9FIL6" }, { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9FIL6", "url": "https://www.uniprot.org/uniprotkb/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FIL6", "url": "https://www.uniprot.org/uniprotkb/Q9FIL6" }, { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": 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"2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL6" } ], 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"uniprot_ac": "A0A1P8AWS5", "gene_name": "SIF1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A1P8AWS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWS5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A1P8AWS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWS5" } ] } ] }, { "uniprot_ac": "A0A1P8B0K8", "gene_name": "PBL38", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A1P8B0K8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0K8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A1P8B0K8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0K8" } ] } ] }, { "uniprot_ac": "A0A1P8B8U9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A1P8B8U9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8U9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A1P8B8U9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8U9" } ] } ] }, { "uniprot_ac": "A0A1P8BAU6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A1P8BAU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAU6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A1P8BAU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAU6" } ] } ] }, { "uniprot_ac": "A8R7E6", "gene_name": "CERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A8R7E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A8R7E6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A8R7E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A8R7E6" } ] } ] }, { "uniprot_ac": "B9DFG5", "gene_name": "CARK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "B9DFG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B9DFG5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "B9DFG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B9DFG5" } ] }, { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "B9DFG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B9DFG5" } ] } ] }, { "uniprot_ac": "B9DGY1", "gene_name": "ABC1K7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "B9DGY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B9DGY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "B9DGY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B9DGY1" } ] } ] }, { "uniprot_ac": "C0LGD6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD6" } ] } ] }, { "uniprot_ac": "C0LGD7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD7" } ] } ] }, { "uniprot_ac": "C0LGD8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD8" } ] } ] }, { "uniprot_ac": "C0LGD9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGD9" } ] } ] }, { "uniprot_ac": "C0LGE0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGE0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGE0" } ] } ] }, { "uniprot_ac": "C0LGE4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGE4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGE4" } ] } ] }, { "uniprot_ac": "C0LGF4", "gene_name": "FEI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGF4" } ] } ] }, { "uniprot_ac": "C0LGF5", "gene_name": "RGI5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGF5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGF5" } ] } ] }, { "uniprot_ac": "C0LGG3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG3" } ] } ] }, { "uniprot_ac": "C0LGG4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG4" } ] } ] }, { "uniprot_ac": "C0LGG6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG6" } ] } ] }, { "uniprot_ac": "C0LGG7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] } ] }, { "uniprot_ac": "C0LGG8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] } ] }, { "uniprot_ac": "C0LGG9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG9" } ] } ] }, { "uniprot_ac": "C0LGH2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH2" } ] } ] }, { "uniprot_ac": "C0LGH3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH3" } ] } ] }, { "uniprot_ac": "C0LGH8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] } ] }, { "uniprot_ac": "C0LGI2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI2" } ] } ] }, { "uniprot_ac": "C0LGI5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI5" } ] } ] }, { "uniprot_ac": "C0LGJ1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ1" } ] } ] }, { "uniprot_ac": "C0LGJ9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] } ] }, { "uniprot_ac": "C0LGK4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] } ] }, { "uniprot_ac": "C0LGK9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK9" } ] } ] }, { "uniprot_ac": "C0LGL4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGL4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGL4" } ] } ] }, { "uniprot_ac": "C0LGL9", "gene_name": "FEI2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGL9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGL9" } ] } ] }, { "uniprot_ac": "C0LGN2", "gene_name": "LRR-RLK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGN2" } ] } ] }, { "uniprot_ac": "C0LGP2", "gene_name": "MEE39", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP2" } ] } ] }, { "uniprot_ac": "C0LGP4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] } ] }, { "uniprot_ac": "C0LGP9", "gene_name": "IMK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] } ] }, { "uniprot_ac": "C0LGQ4", "gene_name": "MDIS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ4" } ] } ] }, { "uniprot_ac": "C0LGQ5", "gene_name": "GSO1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] } ] }, { "uniprot_ac": "C0LGQ7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] } ] }, { "uniprot_ac": "C0LGQ9", "gene_name": "GHR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] } ] }, { "uniprot_ac": "C0LGR3", "gene_name": "RGI3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] } ] }, { "uniprot_ac": "C0LGR6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] } ] }, { "uniprot_ac": "C0LGR9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] } ] }, { "uniprot_ac": "C0LGS2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] } ] }, { "uniprot_ac": "C0LGS3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] } ] }, { "uniprot_ac": "C0LGT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] } ] }, { "uniprot_ac": "C0LGT5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] } ] }, { "uniprot_ac": "C0LGT6", "gene_name": "EFR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] } ] }, { "uniprot_ac": "C0LGU0", "gene_name": "PRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] } ] }, { "uniprot_ac": "C0LGU1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] } ] }, { "uniprot_ac": "C0LGU5", "gene_name": "CIK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] } ] }, { "uniprot_ac": "C0LGU7", "gene_name": "MDIS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] } ] }, { "uniprot_ac": "C0LGV0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] } ] }, { "uniprot_ac": "C0LGV1", "gene_name": "RGI2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] } ] }, { "uniprot_ac": "C0LGW2", "gene_name": "PAM74", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] } ] }, { "uniprot_ac": "C0LGW6", "gene_name": "ERL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] } ] }, { "uniprot_ac": "C0LGX1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] } ] }, { "uniprot_ac": "C0LGX3", "gene_name": "HSL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] } ] }, { "uniprot_ac": "D7SFH9", "gene_name": "LRK10L-2.6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "sn-glycero-3-phospho-(1'-rac-glycerol) + H2O = sn-glycerol 3-phosphate + glycerol + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] } ] }, { "uniprot_ac": "F4HPN2", "gene_name": "IRE4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] } ] }, { "uniprot_ac": "F4HPR9", "gene_name": "ATMAP4K", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] } ] }, { "uniprot_ac": "F4HQ17", "gene_name": "LRK10L-1.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] } ] }, { "uniprot_ac": "F4HQ20", "gene_name": "LRK10L-2.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] } ] }, { "uniprot_ac": "F4HQ22", "gene_name": "LRK10L-2.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] } ] }, { "uniprot_ac": "F4HQ23", "gene_name": "LRK10L-2.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] } ] }, { "uniprot_ac": "F4HQ34", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] } ] }, { "uniprot_ac": "F4HRJ4", "gene_name": "MAPKKK3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] } ] }, { "uniprot_ac": "F4HU55", "gene_name": "BSK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] } ] }, { "uniprot_ac": "F4HVB3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] } ] }, { "uniprot_ac": "F4HVH9", "gene_name": "RAF11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] } ] }, { "uniprot_ac": "F4HWU0", "gene_name": "CARK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] } ] }, { "uniprot_ac": "F4HX16", "gene_name": "PBL41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] } ] }, { "uniprot_ac": "F4HXP9", "gene_name": "XI-C", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] } ] }, { "uniprot_ac": "F4HYG2", "gene_name": "IRE3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] } ] }, { "uniprot_ac": "F4I065", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] } ] }, { "uniprot_ac": "F4I0Z0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] } ] }, { "uniprot_ac": "F4I2K0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] } ] }, { "uniprot_ac": "F4I2N7", "gene_name": "RLK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] } ] }, { "uniprot_ac": "F4I3K4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] } ] }, { "uniprot_ac": "F4I3M3", "gene_name": "BSK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] } ] }, { "uniprot_ac": "F4I3V3", "gene_name": "LRK10L-1.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] } ] }, { "uniprot_ac": "F4I4F2", "gene_name": "RHS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] } ] }, { "uniprot_ac": "F4I6E4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] } ] }, { "uniprot_ac": "F4I7Y4", "gene_name": "BSK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] } ] }, { "uniprot_ac": "F4IAN2", "gene_name": "M3KDELTA7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] } ] }, { "uniprot_ac": "F4IB60", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] } ] }, { "uniprot_ac": "F4IB76", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] } ] }, { "uniprot_ac": "F4IP61", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] } ] }, { "uniprot_ac": "F4IPV6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] } ] }, { "uniprot_ac": "F4IS56", "gene_name": "ILK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] } ] }, { "uniprot_ac": "F4IV25", "gene_name": "PAX", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] } ] }, { "uniprot_ac": "F4IVI0", "gene_name": "BUB1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] } ] }, { "uniprot_ac": "F4J0D2", "gene_name": "PBL36", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] } ] }, { "uniprot_ac": "F4J3A9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] } ] }, { "uniprot_ac": "F4J3H7", "gene_name": "ZRK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] } ] }, { "uniprot_ac": "F4J551", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] } ] }, { "uniprot_ac": "F4J6F6", "gene_name": "IREH1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] } ] }, { "uniprot_ac": "F4J927", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] } ] }, { "uniprot_ac": "F4J982", "gene_name": "SRPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] } ] }, { "uniprot_ac": "F4J9G8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] } ] }, { "uniprot_ac": "F4JC18", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] } ] }, { "uniprot_ac": "F4JDN8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] } ] }, { "uniprot_ac": "F4JEQ2", "gene_name": "PBL23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] } ] }, { "uniprot_ac": "F4JI10", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] } ] }, { "uniprot_ac": "F4JN22", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] } ] }, { "uniprot_ac": "F4JPT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] } ] }, { "uniprot_ac": "F4JPX3", "gene_name": "PBL20", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] } ] }, { "uniprot_ac": "F4JQX7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] } ] }, { "uniprot_ac": "F4JSF8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] } ] }, { "uniprot_ac": "F4JTP5", "gene_name": "STY46", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] } ] }, { "uniprot_ac": "F4JVS7", "gene_name": "MAPKKK16", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] } ] }, { "uniprot_ac": "F4JY37", "gene_name": "RUK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JY37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY37" } ] } ] }, { "uniprot_ac": "F4JZW1", "gene_name": "PBL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] } ] }, { "uniprot_ac": "F4K645", "gene_name": "RAF10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] } ] }, { "uniprot_ac": "F4K6B8", "gene_name": "RGI4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] } ] }, { "uniprot_ac": "F4KA50", "gene_name": "LRK10L-2.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] } ] }, { "uniprot_ac": "F4KA51", "gene_name": "LRK10L-2.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] } ] }, { "uniprot_ac": "F4KEF0", "gene_name": "MUL8.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] } ] }, { "uniprot_ac": "F4KFD4", "gene_name": "MYH9.10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] } ] }, { "uniprot_ac": "F4KI00", "gene_name": "ATRLCK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] } ] }, { "uniprot_ac": "O04086", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] } ] }, { "uniprot_ac": "O04533", "gene_name": "LECRK52", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] } ] }, { "uniprot_ac": "O04534", "gene_name": "LECRK51", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] } ] }, { "uniprot_ac": "O22040", "gene_name": "ANP1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] } ] }, { "uniprot_ac": "O22042", "gene_name": "ANP3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] } ] }, { "uniprot_ac": "O22178", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] } ] }, { "uniprot_ac": "O22476", "gene_name": "BRI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] } ] }, { "uniprot_ac": "O22558", "gene_name": "STY8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] } ] }, { "uniprot_ac": "O22764", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] } ] }, { "uniprot_ac": "O22833", "gene_name": "LECRK54", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] } ] }, { "uniprot_ac": "O22834", "gene_name": "LECRK53", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] } ] }, { "uniprot_ac": "O22932", "gene_name": "CIPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] } ] }, { "uniprot_ac": "O22971", "gene_name": "CIPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] } ] }, { "uniprot_ac": "O23081", "gene_name": "CRK41", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O23081", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23081" } ] } ] }, { "uniprot_ac": "O23082", "gene_name": "CRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] } ] }, { "uniprot_ac": "O23145", "gene_name": "ASK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] } ] }, { "uniprot_ac": "O23236", "gene_name": "MPK14", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] } ] }, { "uniprot_ac": "O23304", "gene_name": "BLUS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] } ] }, { "uniprot_ac": "O23334", "gene_name": "DL3430W", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] } ] }, { "uniprot_ac": "O24527", "gene_name": "SIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] } ] }, { "uniprot_ac": "O48814", "gene_name": "BIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] } ] }, { "uniprot_ac": "O48837", "gene_name": "LECRKS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] } ] }, { "uniprot_ac": "O48963", "gene_name": "PHOT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] } ] }, { "uniprot_ac": "O49318", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] } ] }, { "uniprot_ac": "O49338", "gene_name": "CARK9", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "O49338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49338" } ] } ] }, { "uniprot_ac": "O49445", "gene_name": "LECRK72", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] } ] }, { "uniprot_ac": "O49545", "gene_name": "BAM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] } ] }, { "uniprot_ac": "O49564", "gene_name": "CRK27", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O49564", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49564" } ] } ] }, { "uniprot_ac": "O49717", "gene_name": "CPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] } ] }, { "uniprot_ac": "O49839", "gene_name": "PBL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] } ] }, { "uniprot_ac": "O49840", "gene_name": "PBL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] } ] }, { "uniprot_ac": "O64477", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] } ] }, { "uniprot_ac": "O64556", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] } ] }, { "uniprot_ac": "O64573", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] } ] }, { "uniprot_ac": "O64629", "gene_name": "AUR3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] } ] }, { "uniprot_ac": "O64639", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] } ] }, { "uniprot_ac": "O64682", "gene_name": "PID", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] } ] }, { "uniprot_ac": "O64768", "gene_name": "RAF24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] } ] }, { "uniprot_ac": "O64770", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] } ] }, { "uniprot_ac": "O64771", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] } ] }, { "uniprot_ac": "O64774", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] } ] }, { "uniprot_ac": "O64776", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] } ] }, { "uniprot_ac": "O64777", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] } ] }, { "uniprot_ac": "O64778", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] } ] }, { "uniprot_ac": "O64780", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] } ] }, { "uniprot_ac": "O64781", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] } ] }, { "uniprot_ac": "O64782", "gene_name": "SD129", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] } ] }, { "uniprot_ac": "O64783", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] } ] }, { "uniprot_ac": "O64784", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] } ] }, { "uniprot_ac": "O64793", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] } ] }, { "uniprot_ac": "O64794", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] } ] }, { "uniprot_ac": "O64812", "gene_name": "SRK2J", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] } ] }, { "uniprot_ac": "O64816", "gene_name": "CKA4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] } ] }, { "uniprot_ac": "O64817", "gene_name": "CKA3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] } ] }, { "uniprot_ac": "O64825", "gene_name": "LYK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] } ] }, { "uniprot_ac": "O64842", "gene_name": "PBL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] } ] }, { "uniprot_ac": "O65238", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] } ] }, { "uniprot_ac": "O65405", "gene_name": "CRK28", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] } ] }, { "uniprot_ac": "O65440", "gene_name": "BAM3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] } ] }, { "uniprot_ac": "O65468", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65468", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65468" } ] } ] }, { "uniprot_ac": "O65472", "gene_name": "CRK12", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65472" } ] } ] }, { "uniprot_ac": "O65476", "gene_name": "CRK16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65476" } ] } ] }, { "uniprot_ac": "O65479", "gene_name": "CRK20", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65479" } ] } ] }, { "uniprot_ac": "O65482", "gene_name": "CRK23", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65482", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65482" } ] } ] }, { "uniprot_ac": "O65483", "gene_name": "CRK24", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65483", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65483" } ] } ] }, { "uniprot_ac": "O65530", "gene_name": "PERK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] } ] }, { "uniprot_ac": "O65554", "gene_name": "CIPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] } ] }, { "uniprot_ac": "O65924", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] } ] }, { "uniprot_ac": "O80345", "gene_name": "CDKF-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] } ] }, { "uniprot_ac": "O80396", "gene_name": "MKK3", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] } ] }, { "uniprot_ac": "O80397", "gene_name": "MKK4", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] } ] }, { "uniprot_ac": "O80528", "gene_name": "HASPIN", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] } ] }, { "uniprot_ac": "O80673", "gene_name": "CRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] } ] }, { "uniprot_ac": "O80719", "gene_name": "CARK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] } ] }, { "uniprot_ac": "O80888", "gene_name": "MAPKKK17", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] } ] }, { "uniprot_ac": "O80902", "gene_name": "CIPK22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] } ] }, { "uniprot_ac": "O80939", "gene_name": "LECRK41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] } ] }, { "uniprot_ac": "O80963", "gene_name": "CCR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] } ] }, { "uniprot_ac": "O81064", "gene_name": "PBL37", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] } ] }, { "uniprot_ac": "O81067", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] } ] }, { "uniprot_ac": "O81069", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] } ] }, { "uniprot_ac": "O81291", "gene_name": "LECRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] } ] }, { "uniprot_ac": "O81292", "gene_name": "LECRK43", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] } ] }, { "uniprot_ac": "O81472", "gene_name": "MEKK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] } ] }, { "uniprot_ac": "O81832", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] } ] }, { "uniprot_ac": "O81833", "gene_name": "SD11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] } ] }, { "uniprot_ac": "O81905", "gene_name": "SD18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] } ] }, { "uniprot_ac": "O81906", "gene_name": "B120", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] } ] }, { "uniprot_ac": "O82318", "gene_name": "SKM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] } ] }, { "uniprot_ac": "O82754", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] } ] }, { "uniprot_ac": "P0C5E2", "gene_name": "LRK10L-1.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] } ] }, { "uniprot_ac": "P0DKI6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] } ] }, { "uniprot_ac": "P24100", "gene_name": "CDKA-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] } ] }, { "uniprot_ac": "P25859", "gene_name": "CDKB1-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] } ] }, { "uniprot_ac": "P27450", "gene_name": "CST", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] } ] }, { "uniprot_ac": "P42158", "gene_name": "CKL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] } ] }, { "uniprot_ac": "P42818", "gene_name": "ATPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] } ] }, { "uniprot_ac": "P43288", "gene_name": "ASK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] } ] }, { "uniprot_ac": "P43289", "gene_name": "ASK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] } ] }, { "uniprot_ac": "P43291", "gene_name": "SRK2A", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] } ] }, { "uniprot_ac": "P43292", "gene_name": "SRK2G", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] } ] }, { "uniprot_ac": "P43293", "gene_name": "PBL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] } ] }, { "uniprot_ac": "P43294", "gene_name": "MHK", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] } ] }, { "uniprot_ac": "P43298", "gene_name": "TMK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] } ] }, { "uniprot_ac": "P46573", "gene_name": "PBL10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] } ] }, { "uniprot_ac": "P47735", "gene_name": "RLK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] } ] }, { "uniprot_ac": "P51566", "gene_name": "AFC1", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] } ] }, { "uniprot_ac": "P51567", "gene_name": "AFC2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] } ] }, { "uniprot_ac": "P51568", "gene_name": "AFC3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] } ] }, { "uniprot_ac": "P92937", "gene_name": "CIPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] } ] }, { "uniprot_ac": "P92958", "gene_name": "KIN11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] } ] }, { "uniprot_ac": "P93025", "gene_name": "PHOT2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] } ] }, { "uniprot_ac": "P93050", "gene_name": "RKF3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] } ] }, { "uniprot_ac": "P93749", "gene_name": "CARK4", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "P93749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93749" } ] } ] }, { "uniprot_ac": "P93756", "gene_name": "SD31", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] } ] }, { "uniprot_ac": "P93759", "gene_name": "CPK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] } ] }, { "uniprot_ac": "Q05609", "gene_name": "CTR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] } ] }, { "uniprot_ac": "Q05999", "gene_name": "D6PKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] } ] }, { "uniprot_ac": "Q06548", "gene_name": "PBL9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] } ] }, { "uniprot_ac": "Q06850", "gene_name": "CPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] } ] }, { "uniprot_ac": "Q08466", "gene_name": "CKA2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] } ] }, { "uniprot_ac": "Q08467", "gene_name": "CKA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] } ] }, { "uniprot_ac": "Q0PW40", "gene_name": "CRK13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] } ] }, { "uniprot_ac": "Q0V7T5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] } ] }, { "uniprot_ac": "Q0WNY5", "gene_name": "WAKL18", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ] } ] }, { "uniprot_ac": "Q0WPH8", "gene_name": "NEK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] } ] }, { "uniprot_ac": "Q0WRY5", "gene_name": "PBL7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] } ] }, { "uniprot_ac": "Q0WVM4", "gene_name": "CIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] } ] }, { "uniprot_ac": "Q1PDV6", "gene_name": "PBL27", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] } ] }, { "uniprot_ac": "Q1PE17", "gene_name": "CPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] } ] }, { "uniprot_ac": "Q1PE89", "gene_name": "PBL24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] } ] }, { "uniprot_ac": "Q1PEM5", "gene_name": "PERK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] } ] }, { "uniprot_ac": "Q1PFB9", "gene_name": "AGC1-7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] } ] }, { "uniprot_ac": "Q1PFH8", "gene_name": "CPK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] } ] }, { "uniprot_ac": "Q2MHE4", "gene_name": "HT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] } ] }, { "uniprot_ac": "Q2QAV0", "gene_name": "TIO", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] } ] }, { "uniprot_ac": "Q2V338", "gene_name": "WNK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] } ] }, { "uniprot_ac": "Q2V419", "gene_name": "CDKB1-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] } ] }, { "uniprot_ac": "Q2V452", "gene_name": "CIPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] } ] }, { "uniprot_ac": "Q38868", "gene_name": "CPK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] } ] }, { "uniprot_ac": "Q38869", "gene_name": "CPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] } ] }, { "uniprot_ac": "Q38870", "gene_name": "CPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] } ] }, { "uniprot_ac": "Q38871", "gene_name": "CPK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] } ] }, { "uniprot_ac": "Q38872", "gene_name": "CPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] } ] }, { "uniprot_ac": "Q38873", "gene_name": "CPK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] } ] }, { "uniprot_ac": "Q38997", "gene_name": "KIN10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] } ] }, { "uniprot_ac": "Q39008", "gene_name": "MEKK1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] } ] }, { "uniprot_ac": "Q39010", "gene_name": "ASK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] } ] }, { "uniprot_ac": "Q39011", "gene_name": "ASK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] } ] }, { "uniprot_ac": "Q39012", "gene_name": "ASK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] } ] }, { "uniprot_ac": "Q39016", "gene_name": "CPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] } ] }, { "uniprot_ac": "Q39019", "gene_name": "ASK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] } ] }, { "uniprot_ac": "Q39021", "gene_name": "MPK1", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] } ] }, { "uniprot_ac": "Q39022", "gene_name": "MPK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] } ] }, { "uniprot_ac": "Q39023", "gene_name": "MPK3", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] } ] }, { "uniprot_ac": "Q39024", "gene_name": "MPK4", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] } ] }, { "uniprot_ac": "Q39025", "gene_name": "MPK5", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] } ] }, { "uniprot_ac": "Q39026", "gene_name": "MPK6", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] } ] }, { "uniprot_ac": "Q39027", "gene_name": "MPK7", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] } ] }, { "uniprot_ac": "Q39030", "gene_name": "ATPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] } ] }, { "uniprot_ac": "Q39050", "gene_name": "CKL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] } ] }, { "uniprot_ac": "Q39086", "gene_name": "SD17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] } ] }, { "uniprot_ac": "Q39183", "gene_name": "D6PKL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] } ] }, { "uniprot_ac": "Q39191", "gene_name": "WAK1", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q39191", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39191" } ] } ] }, { "uniprot_ac": "Q39192", "gene_name": "SRK2D", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] } ] }, { "uniprot_ac": "Q39193", "gene_name": "SRK2I", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] } ] }, { "uniprot_ac": "Q39202", "gene_name": "RLK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] } ] }, { "uniprot_ac": "Q39203", "gene_name": "SD22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] } ] }, { "uniprot_ac": "Q39238", "gene_name": "TOUSLED", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] } ] }, { "uniprot_ac": "Q3E884", "gene_name": "LECRK110", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] } ] }, { "uniprot_ac": "Q3E8W4", "gene_name": "ANX2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] } ] }, { "uniprot_ac": "Q3E9C0", "gene_name": "CPK34", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] } ] }, { "uniprot_ac": "Q3E9X6", "gene_name": "CRK21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ] } ] }, { "uniprot_ac": "Q3EBR4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] } ] }, { "uniprot_ac": "Q3ECH2", "gene_name": "LRK10L-2.8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] } ] }, { "uniprot_ac": "Q3EDL4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] } ] }, { "uniprot_ac": "Q42371", "gene_name": "ERECTA", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] } ] }, { "uniprot_ac": "Q42396", "gene_name": "CPK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] } ] }, { "uniprot_ac": "Q42438", "gene_name": "CPK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] } ] }, { "uniprot_ac": "Q42479", "gene_name": "CPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] } ] }, { "uniprot_ac": "Q4V3C8", "gene_name": "PDPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] } ] }, { "uniprot_ac": "Q5HZ38", "gene_name": "GRIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] } ] }, { "uniprot_ac": "Q5PP29", "gene_name": "PBL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] } ] }, { "uniprot_ac": "Q5XF24", "gene_name": "CKL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] } ] }, { "uniprot_ac": "Q5XF57", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] } ] }, { "uniprot_ac": "Q5XF79", "gene_name": "PBL18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] } ] }, { "uniprot_ac": "Q64FQ2", "gene_name": "PID2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] } ] }, { "uniprot_ac": "Q66GN2", "gene_name": "LECRK64", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] } ] }, { "uniprot_ac": "Q683C9", "gene_name": "AUR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] } ] }, { "uniprot_ac": "Q6ICW6", "gene_name": "WNK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] } ] }, { "uniprot_ac": "Q6NKZ9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] } ] }, { "uniprot_ac": "Q6NLQ6", "gene_name": "CPK32", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] } ] }, { "uniprot_ac": "Q6NQ87", "gene_name": "CRK22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ] } ] }, { "uniprot_ac": "Q6XAT2", "gene_name": "ERL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] } ] }, { "uniprot_ac": "Q7FK82", "gene_name": "LECRK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q7FK82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FK82" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q7FK82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FK82" } ] } ] }, { "uniprot_ac": "Q7X8C5", "gene_name": "WAKL2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q7X8C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7X8C5" } ] } ] }, { "uniprot_ac": "Q7XJR9", "gene_name": "CPK16", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q7XJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q7XJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJR9" } ] } ] }, { "uniprot_ac": "Q84JQ4", "gene_name": "PRK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] } ] }, { "uniprot_ac": "Q84M93", "gene_name": "MPK17", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] } ] }, { "uniprot_ac": "Q84M95", "gene_name": "PBL28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] } ] }, { "uniprot_ac": "Q84TI6", "gene_name": "CDKE-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] } ] }, { "uniprot_ac": "Q84VQ3", "gene_name": "CIPK26", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] } ] }, { "uniprot_ac": "Q84VX4", "gene_name": "MPS1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] } ] }, { "uniprot_ac": "Q8GUH1", "gene_name": "PUB33", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] } ] }, { "uniprot_ac": "Q8GWJ7", "gene_name": "CRK19", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GWJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ7" } ] } ] }, { "uniprot_ac": "Q8GX23", "gene_name": "PERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] } ] }, { "uniprot_ac": "Q8GXQ3", "gene_name": "WAKL6", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GXQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXQ3" } ] } ] }, { "uniprot_ac": "Q8GXZ3", "gene_name": "PBL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] } ] }, { "uniprot_ac": "Q8GY82", "gene_name": "CRK45", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] } ] }, { "uniprot_ac": "Q8GYA4", "gene_name": "CRK10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYA4" } ] } ] }, { "uniprot_ac": "Q8GYF5", "gene_name": "WAKL21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ] } ] }, { "uniprot_ac": "Q8GYQ5", "gene_name": "MPK12", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] } ] }, { "uniprot_ac": "Q8GZ99", "gene_name": "HPCA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] } ] }, { "uniprot_ac": "Q8H186", "gene_name": "PBL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] } ] }, { "uniprot_ac": "Q8H199", "gene_name": "CRK14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8H199", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H199" } ] } ] }, { "uniprot_ac": "Q8H1D6", "gene_name": "RBK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] } ] }, { "uniprot_ac": "Q8H1E3", "gene_name": "PBL17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] } ] }, { "uniprot_ac": "Q8H1G6", "gene_name": "CARK7", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "Q8H1G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1G6" } ] } ] }, { "uniprot_ac": "Q8L617", "gene_name": "SZE1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] } ] }, { "uniprot_ac": "Q8L710", "gene_name": "CRK17", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L710", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L710" } ] } ] }, { "uniprot_ac": "Q8L7G3", "gene_name": "CRK7", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L7G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L7G3" } ] } ] }, { "uniprot_ac": "Q8LEB6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] } ] }, { "uniprot_ac": "Q8LF80", "gene_name": "CDKB2-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] } ] }, { "uniprot_ac": "Q8LG64", "gene_name": "CDKB2-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] } ] }, { "uniprot_ac": "Q8LPI7", "gene_name": "CKL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] } ] }, { "uniprot_ac": "Q8LPJ1", "gene_name": "CKL6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] } ] }, { "uniprot_ac": "Q8LPS5", "gene_name": "SERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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"activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RX80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX80" } ] } ] }, { "uniprot_ac": "Q8RXC8", "gene_name": "RBK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] } ] }, { "uniprot_ac": "Q8RXE5", "gene_name": "WNK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXE5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXE5", "database": 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"gene_name": "WAKL22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY17" } ] } ] }, { "uniprot_ac": "Q8RY65", "gene_name": "CIK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] } ] }, { "uniprot_ac": "Q8RY67", "gene_name": "WAKL14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY67" } ] } ] }, { "uniprot_ac": "Q8S8S7", "gene_name": "PUB34", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] } ] }, { "uniprot_ac": "Q8S8Y8", "gene_name": "WNK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] } ] }, { "uniprot_ac": "Q8S8Y9", "gene_name": "WNK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] } ] }, { "uniprot_ac": "Q8S9L6", "gene_name": "CRK29", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] } ] }, { "uniprot_ac": "Q8VYA3", "gene_name": "WAKL10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8VYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYA3" } ] } ] }, { "uniprot_ac": "Q8VYG0", "gene_name": "LRK10L-1.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] } ] }, { "uniprot_ac": "Q8VYK9", "gene_name": "CKL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] } ] }, { "uniprot_ac": "Q8VYT3", "gene_name": "CIK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] } ] }, { "uniprot_ac": "Q8VYY5", "gene_name": "NCRK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] } ] }, { "uniprot_ac": "Q8VZD5", "gene_name": "ASK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] } ] }, { "uniprot_ac": "Q8VZF4", "gene_name": "ZRK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] } ] }, { "uniprot_ac": "Q8VZG8", "gene_name": "MIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ] } ] }, { "uniprot_ac": "Q8VZJ9", "gene_name": "CRCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] } ] }, { "uniprot_ac": "Q8W1D5", "gene_name": "CIPK25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] } ] }, { "uniprot_ac": "Q8W490", "gene_name": "PEPKR2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W490" } ] } ] }, { "uniprot_ac": "Q8W4G6", "gene_name": "CRK15", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W4G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4G6" } ] } ] }, { "uniprot_ac": "Q8W4I7", "gene_name": "CPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] } ] }, { "uniprot_ac": "Q8W4J2", "gene_name": "MPK16", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] } ] }, { "uniprot_ac": "Q8W4L3", "gene_name": "BSK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] } ] }, { "uniprot_ac": "Q8W4P1", "gene_name": "CDKC-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] } ] }, { "uniprot_ac": "Q8W4S5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] } ] }, { "uniprot_ac": "Q93V58", "gene_name": "GRIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] } ] }, { "uniprot_ac": "Q93VD3", "gene_name": "CIPK23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] } ] }, { "uniprot_ac": "Q93VJ2", "gene_name": "IRE1B", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "3.1.26.-", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] } ] }, { "uniprot_ac": "Q93VK0", "gene_name": "PPCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] } ] }, { "uniprot_ac": "Q93Y08", "gene_name": "ABC1K8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] } ] }, { "uniprot_ac": "Q93YN1", "gene_name": "CRPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] } ] }, { "uniprot_ac": "Q93Z18", "gene_name": "CKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] } ] }, { "uniprot_ac": "Q93Z30", "gene_name": "BHP", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] } ] }, { "uniprot_ac": "Q93ZS4", "gene_name": "CIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] } ] }, { "uniprot_ac": "Q940A2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] } ] }, { "uniprot_ac": "Q940H6", "gene_name": "SRK2E", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] } ] }, { "uniprot_ac": "Q944A7", "gene_name": "BSK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] } ] }, { "uniprot_ac": "Q944Q0", "gene_name": "WNK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] } ] }, { "uniprot_ac": "Q94A06", "gene_name": "MKK1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] } ] }, { "uniprot_ac": "Q94AG2", "gene_name": "SERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": 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"activity": "", "evidence": [ { "id": "Q96287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96287" } ] } ] }, { "uniprot_ac": "Q9ASQ5", "gene_name": "CRCK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] } ] }, { "uniprot_ac": "Q9ASQ6", "gene_name": "RFK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": 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"L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] } ] }, { "uniprot_ac": "Q9FJI4", "gene_name": "LECRK111", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] } ] }, { "uniprot_ac": "Q9FJV0", "gene_name": "MKK6", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] } ] }, { "uniprot_ac": "Q9FK63", "gene_name": "CAMRLK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] } ] }, { "uniprot_ac": "Q9FKG5", "gene_name": "PUB51", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] } ] }, { "uniprot_ac": "Q9FKG6", "gene_name": "PUB52", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] } ] }, { "uniprot_ac": "Q9FKS4", "gene_name": "ATR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] } ] }, { "uniprot_ac": "Q9FKW4", "gene_name": "CPK28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] } ] }, { "uniprot_ac": "Q9FL28", "gene_name": "FLS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] } ] }, { "uniprot_ac": "Q9FLV4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] } ] }, { "uniprot_ac": "Q9FLZ3", "gene_name": "KIN12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] } ] }, { "uniprot_ac": "Q9FM85", "gene_name": "PBL16", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] } ] }, { "uniprot_ac": "Q9FMP5", "gene_name": "CPK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] } ] }, { "uniprot_ac": "Q9FMY3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] } ] }, { "uniprot_ac": "Q9FN37", "gene_name": "PSKR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] } ] }, { "uniprot_ac": "Q9FN93", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] } ] }, { "uniprot_ac": "Q9FN94", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] } ] }, { "uniprot_ac": "Q9FNE1", "gene_name": "CRK42", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] } ] }, { "uniprot_ac": "Q9FPR3", "gene_name": "EDR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] } ] }, { "uniprot_ac": "Q9FR53", "gene_name": "TOR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] } ] }, { "uniprot_ac": "Q9FRS6", "gene_name": "PXL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] } ] }, { "uniprot_ac": "Q9FVS6", "gene_name": "ASK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] } ] }, { "uniprot_ac": "Q9FX43", "gene_name": "MKK9", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] } ] }, { "uniprot_ac": "Q9FX86", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] } ] }, { "uniprot_ac": "Q9FX99", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] } ] }, { "uniprot_ac": "Q9FXF2", "gene_name": "RKF1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] } ] }, { "uniprot_ac": "Q9FY48", "gene_name": "KEG", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] } ] }, { "uniprot_ac": "Q9FYC5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] } ] }, { "uniprot_ac": "Q9FYK0", "gene_name": "TMK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] } ] }, { "uniprot_ac": "Q9FZ36", "gene_name": "ANP2", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] } ] }, { "uniprot_ac": "Q9FZ59", "gene_name": "PEPR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] } ] }, { "uniprot_ac": "Q9FZB1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] } ] }, { "uniprot_ac": "Q9FZB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": 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"evidence": [ { "id": "Q9LMM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMM5" } ] } ] }, { "uniprot_ac": "Q9LMN6", "gene_name": "WAK4", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN6" } ] } ] }, { "uniprot_ac": "Q9LMN7", "gene_name": "WAK5", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN7" } ] } ] }, { "uniprot_ac": "Q9LMN8", "gene_name": "WAK3", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN8" } ] } ] }, { "uniprot_ac": "Q9LMP1", "gene_name": "WAK2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMP1" } ] } ] }, { "uniprot_ac": "Q9LMT0", "gene_name": "CDKD-3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] } ] }, { "uniprot_ac": "Q9LMT9", "gene_name": "WAKL13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT9" } ] } ] }, { "uniprot_ac": "Q9LN59", "gene_name": "WAKL11", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LN59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LN59" } ] } ] }, { "uniprot_ac": "Q9LP24", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] } ] }, { "uniprot_ac": "Q9LP51", "gene_name": "CIPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] } ] }, { "uniprot_ac": "Q9LPQ3", "gene_name": "MKK7", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] } ] }, { "uniprot_ac": "Q9LPT1", "gene_name": "PRK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] } ] }, { "uniprot_ac": "Q9LPZ3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] } ] }, { "uniprot_ac": "Q9LPZ9", "gene_name": "SD113", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] } ] }, { "uniprot_ac": "Q9LQ11", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] } ] }, { "uniprot_ac": "Q9LQM8", "gene_name": "MKK10", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] } ] }, { "uniprot_ac": "Q9LQQ8", "gene_name": "PBL5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] } ] }, { "uniprot_ac": "Q9LQQ9", "gene_name": "MPK13", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] } ] }, { "uniprot_ac": "Q9LRP3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] } ] }, { "uniprot_ac": "Q9LRY1", "gene_name": "PBL25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] } ] }, { "uniprot_ac": "Q9LS26", "gene_name": "BSK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] } ] }, { "uniprot_ac": "Q9LS95", "gene_name": "PERK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] } ] }, { "uniprot_ac": "Q9LSE1", "gene_name": "CDG1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] } ] }, { "uniprot_ac": "Q9LSF1", "gene_name": "OXI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] } ] }, { "uniprot_ac": "Q9LSL5", "gene_name": "LECRK92", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] } ] }, { "uniprot_ac": "Q9LSR8", "gene_name": "LECRK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] } ] }, { "uniprot_ac": "Q9LSR9", "gene_name": "LECRK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] } ] }, { "uniprot_ac": "Q9LSS0", "gene_name": "LECRK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] } ] }, { "uniprot_ac": "Q9LSV3", "gene_name": "WAKL16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LSV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSV3" } ] } ] }, { "uniprot_ac": "Q9LSX4", "gene_name": "CKL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] } ] }, { "uniprot_ac": "Q9LT35", "gene_name": "NEK6", "activity": [ { "ec_number": "2.7.11.34", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] }, { "ec_number": "2.7.11.34", "activity": "", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] } ] }, { "uniprot_ac": "Q9LT38", "gene_name": "UCNL", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] } ] }, { "uniprot_ac": "Q9LT96", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] } ] }, { "uniprot_ac": "Q9LTC0", "gene_name": "PBL19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] } ] }, { "uniprot_ac": "Q9LTW5", "gene_name": "AGC1-5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] } ] }, { "uniprot_ac": "Q9LU47", "gene_name": "PUB53", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] } ] }, { "uniprot_ac": "Q9LUC3", 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O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] } ] }, { "uniprot_ac": "Q9LUL2", "gene_name": "WAG2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUL2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUL2" } ] } ] }, { "uniprot_ac": "Q9LUT0", "gene_name": "CARK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUT0", "database": "UniProtKB", "url": 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"https://www.uniprot.org/uniprotkb/Q9SD64" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SD64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SD64" } ] } ] }, { "uniprot_ac": "Q9SEZ7", "gene_name": "CIPK16", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SEZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SEZ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SEZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SEZ7" } ] } ] }, { "uniprot_ac": "Q9SF86", "gene_name": "PCRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SF86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SF86" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SF86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SF86" } ] } ] }, { "uniprot_ac": "Q9SFB6", "gene_name": "MAP3KE2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SFB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SFB6" } ] } ] }, { "uniprot_ac": "Q9SFT7", "gene_name": "PBL26", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SFT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SFT7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SFT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SFT7" } ] } ] 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"L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SGN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGN7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SGN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGN7" } ] } ] }, { "uniprot_ac": "Q9SGP2", "gene_name": "HSL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SGP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGP2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SGP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGP2" } ] } ] }, { "uniprot_ac": "Q9SGY7", "gene_name": "PERK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGY7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SGY7" } ] } ] }, { "uniprot_ac": "Q9SHI2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SHI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SHI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SHI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SHI2" } ] } ] }, { "uniprot_ac": "Q9SHL5", "gene_name": "MJB20.9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SHL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SHL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SHL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SHL5" } ] } ] }, { "uniprot_ac": "Q9SI06", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SI06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SI06" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SI06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SI06" } ] } ] }, { "uniprot_ac": "Q9SIB6", "gene_name": "PBL6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SIB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SIB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIB6" } ] } ] }, { "uniprot_ac": "Q9SII6", "gene_name": "PIX13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SII6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SII6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SII6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SII6" } ] } ] }, { "uniprot_ac": "Q9SIJ1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SIJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SIJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIJ1" } ] } ] }, { "uniprot_ac": "Q9SIQ7", "gene_name": "CPK24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SIQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIQ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SIQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIQ7" } ] } ] }, { "uniprot_ac": "Q9SIT1", "gene_name": "TMK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SIT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SIT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SIT1" } ] } ] }, { "uniprot_ac": "Q9SJ61", "gene_name": "CPK25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJ61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJ61" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SJ61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJ61" } ] } ] }, { "uniprot_ac": "Q9SJG2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] } ] }, { "uniprot_ac": "Q9SJG9", "gene_name": "MPK20", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJG9", "database": "UniProtKB", "url": 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"id": "Q9SK34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SK34" } ] } ] }, { "uniprot_ac": "Q9SKB2", "gene_name": "SOBIR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SKB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SKB2" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SKB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SKB2" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q9SKB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SKB2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SKB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SKB2" } ] } ] }, { "uniprot_ac": "Q9SKG5", "gene_name": "SERK4", "activity": [ { 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"url": "https://www.uniprot.org/uniprotkb/Q9SLI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SLI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SLI2" } ] } ] }, { "uniprot_ac": "Q9SMQ4", "gene_name": "SRK2F", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SMQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SMQ4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SMQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SMQ4" } ] } ] }, { "uniprot_ac": "Q9SN43", "gene_name": "CIPK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SN43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN43" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SN43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN43" } ] } ] }, { "uniprot_ac": "Q9SN80", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SN80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN80" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SN80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN80" } ] } ] }, { "uniprot_ac": "Q9SN97", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SN97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN97" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SN97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SN97" } ] } ] }, { "uniprot_ac": "Q9SNA0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SNA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SNA0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SNA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SNA0" } ] } ] }, { "uniprot_ac": "Q9SNA3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SNA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SNA3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SNA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SNA3" } ] } ] }, { "uniprot_ac": "Q9SND6", "gene_name": "MAPKKK20", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SND6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SND6" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9SND6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SND6" } ] } ] }, { "uniprot_ac": "Q9SPK4", "gene_name": "PPCK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SPK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SPK4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SPK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SPK4" } ] } ] }, { "uniprot_ac": "Q9SR05", "gene_name": "ANX1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SR05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SR05" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SR05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SR05" } ] } ] }, { "uniprot_ac": "Q9SR87", "gene_name": "LECRK61", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SR87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SR87" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SR87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SR87" } ] } ] }, { "uniprot_ac": "Q9SRH7", "gene_name": "PBL35", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SRH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SRH7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SRH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SRH7" } ] } ] }, { "uniprot_ac": "Q9SSA4", "gene_name": "CBC1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SSA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSA4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SSA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSA4" } ] } ] }, { "uniprot_ac": "Q9SSF8", "gene_name": "CPK30", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSF8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSF8" } ] } ] }, { "uniprot_ac": "Q9SSL9", "gene_name": "PEPR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SSL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSL9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SSL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SSL9" } ] } ] }, { "uniprot_ac": "Q9STF0", "gene_name": "LECRKS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] } ] }, { "uniprot_ac": "Q9STJ8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] } ] }, { "uniprot_ac": "Q9STK6", "gene_name": "WNK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STK6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STK6" } ] } ] }, { "uniprot_ac": "Q9STV4", "gene_name": "CIPK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STV4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STV4" } ] } ] }, { "uniprot_ac": "Q9SUA3", "gene_name": "D6PKL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] } ] }, { "uniprot_ac": "Q9SUL7", "gene_name": "CIPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] } ] }, { "uniprot_ac": "Q9SV05", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] } ] }, { "uniprot_ac": "Q9SV69", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] } ] }, { "uniprot_ac": "Q9SV83", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] } ] }, { "uniprot_ac": "Q9SVY5", "gene_name": "ZRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] } ] }, { "uniprot_ac": "Q9SW11", "gene_name": "PUB35", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] } ] }, { "uniprot_ac": "Q9SX31", "gene_name": "PERK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] } ] }, { "uniprot_ac": "Q9SX57", "gene_name": "CARK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] } ] }, { "uniprot_ac": "Q9SXB3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB3" } ] } ] }, { "uniprot_ac": "Q9SXB4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB4" } ] } ] }, { "uniprot_ac": "Q9SXB5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] } ] }, { "uniprot_ac": "Q9SXB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] } ] }, { "uniprot_ac": "Q9SY89", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SY89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SY89" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SY89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SY89" } ] } ] }, { "uniprot_ac": "Q9SY91", "gene_name": "PBL15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SY91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SY91" } ] }, { "ec_number": "2.7.11.1", "activity": 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] }, { "uniprot_ac": "Q9SYB9", "gene_name": "UNC", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] } ] }, { "uniprot_ac": "Q9SYM9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYM9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYM9" } ] } ] }, { "uniprot_ac": "Q9SYQ8", "gene_name": "CLV1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYQ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYQ8" } ] } ] }, { "uniprot_ac": "Q9SYS3", "gene_name": "CRK40", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9SYS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYS3" } ] } ] }, { "uniprot_ac": "Q9SYS7", "gene_name": "CRK39", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9SYS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYS7" } ] } ] }, { "uniprot_ac": "Q9SZD5", "gene_name": "LECRK59", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SZD5", 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Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIL8", "url": "https://www.uniprot.org/uniprotkb/Q9FIL8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FIL8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIL8" } ], 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"MGRGSLGKLMGGEERASKDTDTFNIFGPFHLTSIDWNNQYHRTSVASSLVNGVYTLEGDRLEEREGSEALAKPWWEFFHFTLLETLIDDDSSIYGAIFEYELYHLYQNTPHVKVPRYVIAFRGTVLKGKTWKFDLKLDLKCIFNTLHQGGRSMYAINVIRRMVDKHNHSAIWLAGHSLGAALVLLAGKTMKISGFLLESYIFNPPISSIPLEQLPGGDIIKGLFQITKSVVKATVAMALTDLQVPKDDPKTASWIPYLYVNPADPICAGYIDYFRHKTFMSEIGASHIERIGARKSVRSLLVGRRGKLSPSDLSSEPLHLLPSADMTVNKNKPTKSTTAHGLHQWWERDSTLRENWESCCIRPYHEGKLEQLTIQ", "length": 375, "header": "tr|Q9FIP1-1|Q9FIP1_ARATH Isoform 1 of Lipase class 3-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIP1-1" }, "isoforms": [ { "isoform_ac": "Q9FIP1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1/entry#Q9FIP1-1", "sequence": { "sequence": "MGRGSLGKLMGGEERASKDTDTFNIFGPFHLTSIDWNNQYHRTSVASSLVNGVYTLEGDRLEEREGSEALAKPWWEFFHFTLLETLIDDDSSIYGAIFEYELYHLYQNTPHVKVPRYVIAFRGTVLKGKTWKFDLKLDLKCIFNTLHQGGRSMYAINVIRRMVDKHNHSAIWLAGHSLGAALVLLAGKTMKISGFLLESYIFNPPISSIPLEQLPGGDIIKGLFQITKSVVKATVAMALTDLQVPKDDPKTASWIPYLYVNPADPICAGYIDYFRHKTFMSEIGASHIERIGARKSVRSLLVGRRGKLSPSDLSSEPLHLLPSADMTVNKNKPTKSTTAHGLHQWWERDSTLRENWESCCIRPYHEGKLEQLTIQ", "length": 375, "header": "tr|Q9FIP1-1|Q9FIP1_ARATH Isoform 1 of Lipase class 3-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIP1-1" }, "locus": { "chromosome": "5", "start_pos": 8195600, "end_pos": 8197119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24180.1", "url": "https://www.ensemblgenomes.org/id/AT5G24180.1" }, { "database": "Ensembl Peptide", "id": "AT5G24180.1", "url": "https://www.ensemblgenomes.org/id/AT5G24180.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 240, "end_pos": 240, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FIP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIP1" } ], "site_lbl": "Thr240" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIP1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FIP1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G24180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FIP1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "Q9FIP1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9FIP1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FIP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIP1" }, { "id": "PF01764", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fungal lipase-type", "eco_id": "ECO_0000259", "start_pos": 156, "end_pos": 194, "start_aa": "Ile", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 240 ], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FIP3-1", "uniprot_ac": "Q9FIP3", "uniprot_id": "Q9FIP3_ARATH", "mass": { "chemical_mass": 39730.0, "monoisotopic_mass": 39730.0 }, "refseq": { "ac": "NP_199494", "name": "carboxyl-terminal proteinase-like protein, putative (DUF239)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199494" }, "gene_names": [ { "name": "MZA15.25", "type": "recommended", "evidence": [ { "id": "Q9FIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3" } ] }, { "name": "MZA15.25", "type": "synonym", "evidence": [ { "id": "NP_199494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199494" } ] }, { "name": "MZA15_25", "type": "synonym", "evidence": [ { "id": "NP_199494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199494" }, { "id": "Q9FIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3" } ] } ], "protein_names": [ { "name": "Carboxyl-terminal proteinase-like protein, putative (DUF239)", "type": "synonym", "evidence": [ { "id": "Q9FIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3/entry#names_and_taxonomy" } ] }, { "name": "carboxyl-terminal proteinase-like protein, putative (DUF239)", "type": "synonym", "evidence": [ { "id": "NP_199494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199494" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FIP3", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MZA15.25", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3", "locus": {} } ], "crossref": [ { "id": "AT5G46820", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46820", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834726", "url": "https://www.ncbi.nlm.nih.gov/gene/834726", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46820", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46820", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMDASSF", "url": "https://omabrowser.org/oma/group/FMDASSF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31589:SF248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31589:SF248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199494", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199494", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G46820", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46820", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIP3", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIP3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPTARYPMERPQEPEYECVDIYKQPSLQHPKLQNHQIQMRPSDEVLAMLSGDTSANDEMVAEFDIPEEGCPQGQVPIHKPRNLNHTEKPLSLLMDMELLAAVMKKIDATPWRGASAWFSIYQPKLTNKDQFSMSFMWLNTEYNGERTNAQFGWAVIPALYGDDRTRLTAYWSPDKIENGCYNIQCKGFVQTDHRVALGTGFSNTSVVGGNQYKAFFAISQDPKTKNLWLTVQKINIGYWPEELLPFFNDGAESVIYGGFTNAPSDNIQLFEIVSPPMGNGNKPLDEEVDLKHTCYMHSLKYVTPDYKSVDVDSNKVAEVADAGICYDAIYFDKLGRYGQTFTFGGPGGYCDV", "length": 352, "header": "tr|Q9FIP3-1|Q9FIP3_ARATH Isoform 1 of Carboxyl-terminal proteinase-like protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN=MZA15.25 PE=4 SV=1 CANONICAL=Q9FIP3-1" }, "isoforms": [ { "isoform_ac": "Q9FIP3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP3/entry#Q9FIP3-1", "sequence": { "sequence": "MPTARYPMERPQEPEYECVDIYKQPSLQHPKLQNHQIQMRPSDEVLAMLSGDTSANDEMVAEFDIPEEGCPQGQVPIHKPRNLNHTEKPLSLLMDMELLAAVMKKIDATPWRGASAWFSIYQPKLTNKDQFSMSFMWLNTEYNGERTNAQFGWAVIPALYGDDRTRLTAYWSPDKIENGCYNIQCKGFVQTDHRVALGTGFSNTSVVGGNQYKAFFAISQDPKTKNLWLTVQKINIGYWPEELLPFFNDGAESVIYGGFTNAPSDNIQLFEIVSPPMGNGNKPLDEEVDLKHTCYMHSLKYVTPDYKSVDVDSNKVAEVADAGICYDAIYFDKLGRYGQTFTFGGPGGYCDV", "length": 352, "header": "tr|Q9FIP3-1|Q9FIP3_ARATH Isoform 1 of Carboxyl-terminal proteinase-like protein, putative (DUF239) OS=Arabidopsis thaliana OX=3702 GN=MZA15.25 PE=4 SV=1 CANONICAL=Q9FIP3-1" }, "locus": { "chromosome": "5", "start_pos": 18993633, "end_pos": 18996672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46820.1", "url": "https://www.ensemblgenomes.org/id/AT5G46820.1" }, { "database": "Ensembl Peptide", "id": "AT5G46820.1", "url": "https://www.ensemblgenomes.org/id/AT5G46820.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 165, "end_pos": 165, 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"MDDQSNRGNDNHNNDHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRSIVQQLTGLGSTSSVNPPQTNHPKPPNSRLVKVRPAPLTQLNHPPPPPPPPPPVQSVPIASEPVQPVNQFSSNPAESPISAYMRYLIESSPVGNRVQPQNQNPVQPSTGLFQSHQTGPNPMSFQSPASQFALSPQPRSPFPLFSPNFAFSPRFLGGSNESLPPPSPGFFFPLLSPLWKNQ", "length": 237, "header": "tr|Q9FIP7-1|Q9FIP7_ARATH Isoform 1 of VQ motif-containing protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.20 PE=1 SV=1 CANONICAL=Q9FIP7-1" }, "isoforms": [ { "isoform_ac": "Q9FIP7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIP7/entry#Q9FIP7-1", "sequence": { "sequence": "MDDQSNRGNDNHNNDHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRSIVQQLTGLGSTSSVNPPQTNHPKPPNSRLVKVRPAPLTQLNHPPPPPPPPPPVQSVPIASEPVQPVNQFSSNPAESPISAYMRYLIESSPVGNRVQPQNQNPVQPSTGLFQSHQTGPNPMSFQSPASQFALSPQPRSPFPLFSPNFAFSPRFLGGSNESLPPPSPGFFFPLLSPLWKNQ", "length": 237, "header": "tr|Q9FIP7-1|Q9FIP7_ARATH Isoform 1 of VQ motif-containing protein OS=Arabidopsis thaliana OX=3702 GN=MZA15.20 PE=1 SV=1 CANONICAL=Q9FIP7-1" }, "locus": { "chromosome": "5", "start_pos": 18978977, "end_pos": 18980179, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46780.2", "url": "https://www.ensemblgenomes.org/id/AT5G46780.2" }, { "database": "Ensembl Peptide", "id": "AT5G46780.2", "url": "https://www.ensemblgenomes.org/id/AT5G46780.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, 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T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIQ8", "url": "https://www.uniprot.org/uniprotkb/Q9FIQ8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FIQ9", "url": "https://www.uniprot.org/uniprotkb/Q9FIQ9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G62060", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIT3", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIT3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRRSKESNYNISSQRRRYREISTREKSRYIDIPLDITVEILKKLPAKSLVRFQCVSKQWSTIIGSRRDFIDSIVARSMTHPQQWWDVLLIFHYQSDKSSFFIFTHPLNTNQELVSIPGLTVDCYGYIRDDLFNHVFVFGYDPVKNKYKVMCLMITKSEEFENACFVFTLRDPKKQWRNVKCGIQHHYPWLPAVCINGAIYYRATEDHGSTFFLVSFDVRSEKFDHVNAPKELIDSKDSTLINYQGKLGFVSYERSVGIWVMEDHNKQGWSKVVDSSIGSGEIVFINKMVICHDTVYVVFFLS", "length": 303, "header": "sp|Q9FIT3-1|FB297_ARATH Isoform 1 of Putative F-box protein At5g62060 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIT3-1" }, "isoforms": [ { "isoform_ac": "Q9FIT3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3/entry#Q9FIT3-1", "sequence": { "sequence": "MKRRSKESNYNISSQRRRYREISTREKSRYIDIPLDITVEILKKLPAKSLVRFQCVSKQWSTIIGSRRDFIDSIVARSMTHPQQWWDVLLIFHYQSDKSSFFIFTHPLNTNQELVSIPGLTVDCYGYIRDDLFNHVFVFGYDPVKNKYKVMCLMITKSEEFENACFVFTLRDPKKQWRNVKCGIQHHYPWLPAVCINGAIYYRATEDHGSTFFLVSFDVRSEKFDHVNAPKELIDSKDSTLINYQGKLGFVSYERSVGIWVMEDHNKQGWSKVVDSSIGSGEIVFINKMVICHDTVYVVFFLS", "length": 303, "header": "sp|Q9FIT3-1|FB297_ARATH Isoform 1 of Putative F-box protein At5g62060 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIT3-1" }, "locus": { "chromosome": "5", "start_pos": 24927688, "end_pos": 24928698, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62060.1", "url": "https://www.ensemblgenomes.org/id/AT5G62060.1" }, { "database": "Ensembl Peptide", "id": "AT5G62060.1", "url": "https://www.ensemblgenomes.org/id/AT5G62060.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FIT3", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Nakamura Y, Sato S, Asamizu E, Kaneko T, Kotani H, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FIT3", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3" } ], "reference": [ { "type": "PubMed", "id": "9872454", "url": "https://glygen.org/publication/PubMed/9872454" } ] } ], "pathway": [ { "id": "ath:AT5G62060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62060", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FIT3", "url": "https://www.uniprot.org/uniprotkb/Q9FIT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"Q9FIU1", "url": "https://www.orthodb.org/?gene=Q9FIU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31681", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31681", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31681:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31681:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_200274", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200274", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G54630", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G54630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FIU1", "url": "https://www.uniprot.org/uniprotkb/Q9FIU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FIU1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIU1-1", "database": "UniProtKB", 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Uncharacterized conserved protein (UCP012943) OS=Arabidopsis thaliana OX=3702 GN=MRB17.4 PE=1 SV=1 CANONICAL=Q9FIV0-1" }, "locus": { "chromosome": "5", "start_pos": 22156304, "end_pos": 22158110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54540.1", "url": "https://www.ensemblgenomes.org/id/AT5G54540.1" }, { "database": "Ensembl Peptide", "id": "AT5G54540.1", "url": "https://www.ensemblgenomes.org/id/AT5G54540.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 116, "end_pos": 116, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FIV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FIV0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser116" }, { "start_pos": 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"MAEHDFSLKETCPKIGGRRSIPGGDMLTSSFDLVERMTFLYIRIVKARALPSNDLFVEVTIGRYKGRTKRSTNPYPNLEFDEVFAFNSDRLQGNMLEVTMKMNEEEIIGQCRFEVAEIPTRIPPDSPLAPQWDRLEDRNANRFGEEVMVSVWMGTQADEVCPEAWHSDSATVTGENAVIVRSKVYLSPRLWYLRVNVIEAQVLVLLQGNRTNPEVLVKGFVGNVVVRSRVSQSRTMSPVLERGYDVGQKEECLGLCEIKLSQVERRVLPGPVPALWYNLERVGDSGFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPTIGVLVLGVISASGSIPMKSRDGRGTTDAYCVAKYGQKWLGRSEPPLGRDVIEYMLDFGSNIWCLRRGRAHFERIVSFFTTFIDSWIWFDSVCKWKSPLSKADSALPDELDEEFDGFPSARSADLVRNSGLWSNLLSLHETANDFACVLRHETP", "length": 478, "header": "tr|Q9FIZ1-1|Q9FIZ1_ARATH Isoform 1 of C2 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FIZ1-1" }, "isoforms": [ { "isoform_ac": "Q9FIZ1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FIZ1/entry#Q9FIZ1-1", "sequence": { "sequence": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31293:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FJ30", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FJ30", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G41840", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G41840", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FJ30", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJ30-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30-1", "database": "UniProtKB", 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"MKSRKKVVVGVSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWVLEWIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEGGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIPTLKRLNFCRSEDFYEGEFHFYEDYDEENINEGVSLSFDNPNLVYLEYSDVIVDKYKQVSFDSLVEANLRLRKTPDQDETDKVNVTKLLMGIHNVKILYLSDDTLEVLSCCRERIPVFDNLLELTIKTTPYVGWKSLPPLLKSCPSLETLVFEGLHHKYTKRCGDKDGCLCKYENHWGTKKKKNVRTCLSSSLVKVLKILKFGETFEDENEDGLDVDHDDYDDEDAVSCDEVGGVVEEQIEHVKHFLETMPVLKQVILYYNTPKDEDVMKVFKKLEKLPRVASANCNVQISSKNLSLSSTSTKRGTLL", "length": 540, "header": "sp|Q9FJ30-1|FBL88_ARATH Isoform 1 of Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJ30-1" }, "locus": { "chromosome": "5", "start_pos": 16754436, "end_pos": 16756263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41840.1", "url": "https://www.ensemblgenomes.org/id/AT5G41840.1" }, { "database": "Ensembl Peptide", "id": "AT5G41840.1", "url": "https://www.ensemblgenomes.org/id/AT5G41840.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 419, "end_pos": 419, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FJ30", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FJ30" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr419" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FJ30", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FJ30" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FJ30", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Nakamura Y, Sato S, Asamizu E, Kaneko T, Kotani H, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FJ30", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30" } ], "reference": [ { "type": "PubMed", "id": "9872454", "url": "https://glygen.org/publication/PubMed/9872454" } ] } ], "pathway": [ { "id": "ath:AT5G41840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FJ30", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FJ30-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 540, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FJ30-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FJ30" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FJ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ30" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 13, "end_pos": 61, "start_aa": "Gly", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 419 ], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 316, "end_pos": 318 }, { "start_pos": 526, "end_pos": 528 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FJ36-1", "uniprot_ac": "Q9FJ36", "uniprot_id": "Q9FJ36_ARATH", "mass": { "chemical_mass": 62736.0, "monoisotopic_mass": 62736.0 }, "refseq": {}, "gene_names": [ { "name": "K16L22.6", "type": "synonym", "evidence": [ { "id": "Q9FJ36", "database": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ] }, { "name": "MMN10.25", "type": "synonym", "evidence": [ { "id": "NP_200808", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200808" } ] }, { "name": "MMN10_25", "type": "synonym", "evidence": [ { "id": "NP_200808", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200808" }, { "id": "Q9FJD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ] } ], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9FJD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_200808", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200808" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FJD7", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MMN10.25", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7", "locus": {} } ], "crossref": [ { "id": "836122", "url": "https://www.ncbi.nlm.nih.gov/gene/836122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G60000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G60000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TFYREAH", "url": "https://omabrowser.org/oma/group/TFYREAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_200808", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200808", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G60000", "url": 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"MDTLIMVSIMTMMLFSTFATTRAATLLVSNELKRRGDVPVFVTCHRTPWLSKLVPLGQKLLIEIPTTTGDNAVDEKAQGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYRWNNNKRIWDKVFPIIWN", "length": 149, "header": "tr|Q9FJD7-1|Q9FJD7_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MMN10.25 PE=1 SV=1 CANONICAL=Q9FJD7-1" }, "locus": { "chromosome": "5", "start_pos": 24159294, "end_pos": 24159780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G60000.1", "url": "https://www.ensemblgenomes.org/id/AT5G60000.1" }, { "database": "Ensembl Peptide", "id": "AT5G60000.1", "url": "https://www.ensemblgenomes.org/id/AT5G60000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FJD7", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FJD7", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G60000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G60000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FJD7", "url": "https://www.uniprot.org/uniprotkb/Q9FJD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G59940", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G59940", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHVDCVH", "url": "https://omabrowser.org/oma/group/FHVDCVH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": 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repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FJE6-1" }, "isoforms": [ { "isoform_ac": "Q9FJE6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJE6/entry#Q9FJE6-1", "sequence": { "sequence": 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repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FJE6-1" }, "locus": { "chromosome": "5", "start_pos": 24123913, "end_pos": 24126717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G59900.1", "url": "https://www.ensemblgenomes.org/id/AT5G59900.1" }, { "database": "Ensembl Peptide", "id": "AT5G59900.1", "url": "https://www.ensemblgenomes.org/id/AT5G59900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9FJE6", "url": "https://www.uniprot.org/uniprotkb/Q9FJE6" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FJE6", "url": "https://www.uniprot.org/uniprotkb/Q9FJE6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Nakamura Y, Sato S, Asamizu E, Kaneko T, Kotani H, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FJJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FJJ4" } ], "reference": [ { "type": "PubMed", "id": "9872454", "url": "https://glygen.org/publication/PubMed/9872454" } ] } ], "pathway": [ { "id": "ath:AT5G62510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FJJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FJJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FJL9", "url": "https://www.uniprot.org/uniprotkb/Q9FJL9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": 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"MAEISGLPDDLLVKILAFLPTKVAISTSVLSKQWRFLWMWLPKLKYDDYDDITDGFNSVSAFQTYRDFIAKNLPLHRAPIIESLSLGFRCGTLQPEDLKSWVEVAVSRSVRELSILAYYRNNYALSSSSLYTCKSLVTLKGFNIRVDVPPTVCLLPSLRTLELKRVRYLNEDSLRMLLSFCPVLEYLSIERHDNDNLRGLVVDVPSLRRLSLTSYTGCSSDDYVIVTPSLKYFKAFDYRSEISSYKIEKIPELEEADISIERNPEKLFVYFKSIKCLSLQVDFNSKEEPGYDSGIVFNHLEELTPYINDANWSKLLFRLLNDSPKLRVLEISNSKSFYKEKIGEYLPVSWSKNQGSVPKCFLNSLETFRVKWYYSEEQEDRDFLSLIFKHARCLKSTSILHR", "length": 402, "header": "sp|Q9FJU3-1|FBD28_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56690 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJU3-1" }, "locus": { "chromosome": "5", "start_pos": 22939723, "end_pos": 22941099, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56690.1", "url": "https://www.ensemblgenomes.org/id/AT5G56690.1" }, { "database": "Ensembl Peptide", "id": "AT5G56690.1", "url": "https://www.ensemblgenomes.org/id/AT5G56690.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", 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"27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FJV2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FJV2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_200467", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200467", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G56560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FJV2", "url": "https://www.uniprot.org/uniprotkb/Q9FJV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJV2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKQTRLSDLPDELLLKILSALPMFKVTLATRLISRRWKGPWKLVPDVTFDDDDIPFKSFETFMSFVYGSFLSNDAQILDRLHLKLNQKYSASDINFWVQVAVNRSVRELRIDLFGKTLELPCCLCSCITLKELTLHDLCIKVVPAWFRLPSLKTLHLLSVKFSSDGFVASILRICPVLERLVVDGTKGNVMITNIDVPTLRNLSIRNSKGKGTYVEGSKGFVIKAPSLTDLNFEDTLSNFLMFEPMPEVIKADIQVICDQSKNFIGSLTSIQHLSLCSLTSKTPYPACTVFSSLKYLELCTCSARWANLFACILNAAPELRSLKLKSKHKFNYNDPMTLWEEPAVVAKCLSEHLEIFEWRQYEGTEQERNVAGYILANATCLKMATFSTRCRNRNHRMLKKLKSMDRVSKACRLVFD", "length": 418, "header": "sp|Q9FJV2-1|FBD27_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56560 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FJV2-1" }, "isoforms": [ { "isoform_ac": "Q9FJV2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJV2/entry#Q9FJV2-1", "sequence": { "sequence": "MEKQTRLSDLPDELLLKILSALPMFKVTLATRLISRRWKGPWKLVPDVTFDDDDIPFKSFETFMSFVYGSFLSNDAQILDRLHLKLNQKYSASDINFWVQVAVNRSVRELRIDLFGKTLELPCCLCSCITLKELTLHDLCIKVVPAWFRLPSLKTLHLLSVKFSSDGFVASILRICPVLERLVVDGTKGNVMITNIDVPTLRNLSIRNSKGKGTYVEGSKGFVIKAPSLTDLNFEDTLSNFLMFEPMPEVIKADIQVICDQSKNFIGSLTSIQHLSLCSLTSKTPYPACTVFSSLKYLELCTCSARWANLFACILNAAPELRSLKLKSKHKFNYNDPMTLWEEPAVVAKCLSEHLEIFEWRQYEGTEQERNVAGYILANATCLKMATFSTRCRNRNHRMLKKLKSMDRVSKACRLVFD", "length": 418, "header": "sp|Q9FJV2-1|FBD27_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56560 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FJV2-1" }, "locus": { "chromosome": "5", "start_pos": 22899724, "end_pos": 22901985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56560.2", "url": "https://www.ensemblgenomes.org/id/AT5G56560.2" }, { "database": "Ensembl Peptide", "id": "AT5G56560.2", "url": "https://www.ensemblgenomes.org/id/AT5G56560.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 215, "end_pos": 215, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FJV2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FJV2" } ], "site_lbl": "Tyr215" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. 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VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kotani H, Nakamura Y, Sato S, Asamizu E, Kaneko T, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FJV2", "url": "https://www.uniprot.org/uniprotkb/Q9FJV2" } ], "reference": [ { "type": "PubMed", "id": "9734815", "url": "https://glygen.org/publication/PubMed/9734815" } ] } ], "pathway": [ { "id": "ath:AT5G56560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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C2HC zinc fingers superfamily protein OS=Arabidopsis thaliana OX=3702 GN=GAL2 PE=4 SV=1 CANONICAL=Q9FJV4-1" }, "locus": { "chromosome": "5", "start_pos": 17088695, "end_pos": 17089597, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42640.1", "url": "https://www.ensemblgenomes.org/id/AT5G42640.1" }, { "database": "Ensembl Peptide", "id": "AT5G42640.1", "url": "https://www.ensemblgenomes.org/id/AT5G42640.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 203, "end_pos": 203, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FJV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FJV4" } ], "site_lbl": "Ser203" }, { "start_pos": 206, "end_pos": 206, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FJV4", "url": 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[ "Protein Classification" ] }, { "id": "PTHR33413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33413:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33413:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G67620", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G67620", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FJW1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJW1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKKTKHRKKKLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHGGGRGGGGWRPALHSIPEFGSS", "length": 182, "header": "tr|Q9FJW1-1|Q9FJW1_ARATH Isoform 1 of DUF4228 domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJW1-1" }, "isoforms": [ { "isoform_ac": "Q9FJW1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1/entry#Q9FJW1-1", "sequence": { "sequence": "MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKKTKHRKKKLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHGGGRGGGGWRPALHSIPEFGSS", "length": 182, "header": "tr|Q9FJW1-1|Q9FJW1_ARATH Isoform 1 of DUF4228 domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FJW1-1" }, "locus": { "chromosome": "5", "start_pos": 26964551, "end_pos": 26966010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G67620.1", "url": "https://www.ensemblgenomes.org/id/AT5G67620.1" }, { "database": "Ensembl Peptide", "id": "AT5G67620.1", "url": "https://www.ensemblgenomes.org/id/AT5G67620.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, 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"url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FJW1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G67620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G67620", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FJW1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "Q9FJW1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to fungus", "id": "GO:0009620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009620", "evidence": [ { "database": "UniProtKB", "id": "Q9FJW1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": 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[3702]" } ], "gene": [ { "name": "NEMP_B", "url": "https://www.uniprot.org/uniprotkb/Q9FJW2", "locus": {} } ], "crossref": [ { "id": "AT5G67610", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G67610", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "836897", "url": "https://www.ncbi.nlm.nih.gov/gene/836897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4K567", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4K567*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR019358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G67610", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G67610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTRVHIR", "url": "https://omabrowser.org/oma/group/CTRVHIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4K567", "url": "https://www.orthodb.org/?gene=F4K567", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FJW2", "url": "https://www.orthodb.org/?gene=Q9FJW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31587", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31587", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31587:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31587:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_201562", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_201562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G67610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G67610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K567", "url": "https://www.uniprot.org/uniprotkb/F4K567", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K567-1", "url": "https://www.uniprot.org/uniprotkb/F4K567-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJW2", "url": "https://www.uniprot.org/uniprotkb/Q9FJW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FJW2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDYRLLRNSGVVIGIILLHLFTFASLVSSDELQFVVGESGELQVTPSLEVKGSPGLKPDRTSLCERIHIHGLGRFKHLDKYAHSLKLIVNASISGKTNNIDVCFHRNLSRGIGMCPHSRWEKASKGSWVQTMSPFDHKILDVRVPSSNKVSLEVSAVEELFMHRIVFLLLGAVLLASASTLSQSLAFYYSSAMAVGIILVVLLVLFQGMKLLPTGRSSFALFIYSTLLGLGGFLLRYLPGLFESLLTEMGIDEEMYTPAAIFVGAFLSLGGAFFGFWTVRKLILTEDGSIDVSTSLFVSWSIRIMAAVLILQSSVDPLLAGGALISVILMSSTLKKITRLKFLLRLFEIPLNLLLGIWEAIRDTDIPSVPGYLHDFMQKSPDASGFRNRVTSASPSGGINNGMRESPPSESDTFPSSFHKTPERSQLTKEEWKKLTKDSTTKAVQELVSSPDFGKWAAVNADRINVTPRKGSSSKNQPRKWMRWF", "length": 486, "header": "tr|Q9FJW2-1|Q9FJW2_ARATH Isoform 1 of Transmembrane protein (DUF2215) OS=Arabidopsis thaliana OX=3702 GN=NEMP_B PE=1 SV=1 CANONICAL=Q9FJW2-1" }, "isoforms": [ { "isoform_ac": "F4K567-1", "url": "https://www.uniprot.org/uniprotkb/Q9FJW2/entry#F4K567-1", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/Q9FK17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLLNQPSKLCFRRPVLARSSPLHSNGFSSSSLQTPPSMMALKRTYFADYAHHFEKKVPPELVYNDIKDDDDIGTIGSSHGWVVTLKDDGILRLQDDLNPVASETDPKRISLPPLVTLPHCQTQIVTNVAMSSSSPEDDECVVAVKFLGPQLRFCRPALKNPEWTNIRIQNPCFFSSRVMFSETHDMFRIPGSGGHLIGSWGLHTPPKIDKLRFQNLPKLTKTKRKLLHSCFTSEHLVESRSTGETFLVKWYRRTPAKPIKGMATMITKALHVFKLDKKGNAVYTQDIGDLCIFLSKSEPFCVPASSFPQGLHSLQAMRSNHVYILDVDEFGLVELVDSSIASVNCTLKVPFYIPPQNIN", "length": 361, "header": "tr|Q9FK17-1|Q9FK17_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATDOB7 PE=1 SV=1 CANONICAL=Q9FK17-1" }, "isoforms": [ { "isoform_ac": "Q9FK17-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK17/entry#Q9FK17-1", "sequence": { "sequence": 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"uniprot_id": "Q9FK18_ARATH", "mass": { "chemical_mass": 40009.0, "monoisotopic_mass": 40009.0 }, "refseq": { "ac": "NP_200135", "name": "hypothetical protein (DUF295)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200135" }, "gene_names": [ { "name": "ATDOB6", "type": "recommended", "evidence": [ { "id": "Q9FK18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK18" } ] }, { "name": "K19E1.3", "type": "synonym", "evidence": [ { "id": "NP_200135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200135" }, { "id": "Q9FK18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK18" } ] }, { "name": "K19E1_3", "type": "synonym", "evidence": [ { "id": "NP_200135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200135" }, { "id": "Q9FK18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK18" } ] } ], "protein_names": [ { "name": "KIB1-4 beta-propeller domain-containing protein", "type": "recommended", "evidence": [ { "id": "Q9FK18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK18/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF295)", "type": "synonym", "evidence": [ { "id": "NP_200135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200135" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FK18", "url": "https://www.uniprot.org/uniprotkb/Q9FK18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ATDOB6", "url": "https://www.uniprot.org/uniprotkb/Q9FK18", "locus": {} } ], "crossref": [ { "id": "835404", "url": "https://www.ncbi.nlm.nih.gov/gene/835404", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G53230", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G53230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NTHEWIN", "url": "https://omabrowser.org/oma/group/NTHEWIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FK18", "url": "https://www.orthodb.org/?gene=Q9FK18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31681", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31681", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31681:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31681:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03478", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03478", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200135", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G53230", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G53230", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FK18", "url": "https://www.uniprot.org/uniprotkb/Q9FK18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FK18-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLLNQHWKLCFRKPVLARSSPLHSNGLSFSSLQTPPCFIVDAEPCGAGLGKLKIVSAGDFRLTQLEKKVPLELMTGMENIGSSNGWVATLKDDVVRLQDDLNPFASASDPKRISLPPLVTLPLCQTQIVINVAMSSSSPEDDDCVVAVKFFGRQLSFFRTNTHEWINVKMEDPCFFSSRVFFSKKDDKFYIPGGHLIGSWDLRTDKPTAPKIHKLRFRNLPKLTKTKRKLMDSCYKREDLVESTTTGETFLVKWYKKIVGKVIKGRATIKTKAIMVFKLDEEGNAVYTQDIGDLFIFISEAQPTCVPASSVPGLLPNFVLFYDVNEFGSAYLADSSVSSEISTFPVPYHIPPQNIV", "length": 358, "header": "tr|Q9FK18-1|Q9FK18_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATDOB6 PE=1 SV=1 CANONICAL=Q9FK18-1" }, "isoforms": [ { "isoform_ac": "Q9FK18-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK18/entry#Q9FK18-1", "sequence": { "sequence": "MSLLLNQHWKLCFRKPVLARSSPLHSNGLSFSSLQTPPCFIVDAEPCGAGLGKLKIVSAGDFRLTQLEKKVPLELMTGMENIGSSNGWVATLKDDVVRLQDDLNPFASASDPKRISLPPLVTLPLCQTQIVINVAMSSSSPEDDDCVVAVKFFGRQLSFFRTNTHEWINVKMEDPCFFSSRVFFSKKDDKFYIPGGHLIGSWDLRTDKPTAPKIHKLRFRNLPKLTKTKRKLMDSCYKREDLVESTTTGETFLVKWYKKIVGKVIKGRATIKTKAIMVFKLDEEGNAVYTQDIGDLFIFISEAQPTCVPASSVPGLLPNFVLFYDVNEFGSAYLADSSVSSEISTFPVPYHIPPQNIV", "length": 358, "header": "tr|Q9FK18-1|Q9FK18_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATDOB6 PE=1 SV=1 CANONICAL=Q9FK18-1" }, "locus": { "chromosome": "5", "start_pos": 21598848, "end_pos": 21600008, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53230.1", "url": "https://www.ensemblgenomes.org/id/AT5G53230.1" }, { "database": "Ensembl Peptide", "id": "AT5G53230.1", "url": "https://www.ensemblgenomes.org/id/AT5G53230.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": 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], "gene": [ { "name": "MXI22.13", "url": "https://www.uniprot.org/uniprotkb/Q9FK31", "locus": {} } ], "crossref": [ { "id": "835109", "url": "https://www.ncbi.nlm.nih.gov/gene/835109", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G50410", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50410", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SIQHYMR", "url": "https://omabrowser.org/oma/group/SIQHYMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FK31", "url": "https://www.orthodb.org/?gene=Q9FK31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_199852", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199852", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G50410", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G50410", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FK31", "url": "https://www.uniprot.org/uniprotkb/Q9FK31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FK31-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNSSDKTLEDEKVQQQQLESDDKISNTNQRTEPSQEWETMARAWVSAFPDAKAVVSAGEVETWIGTNLDSLPADLRHMPRSEIVDRLLSIQHYMRPTPSSDQNEQNVEADQQHPARFQRTDQWLPVYSWLESLDNGELVKSKDISEWLDANPEVKQELSSRHSRYHLTHYVKKCHLKILKRKEKKGLIRLSRATAMEVHKEFGEKHHATLSADPMSNIPKDSDLYRTKQKEAKRRFEILVELEKRLAPHFAKPRIGNR", "length": 259, "header": "tr|Q9FK31-1|Q9FK31_ARATH Isoform 1 of Ribonucleoside-diphosphate reductase subunit beta OS=Arabidopsis thaliana OX=3702 GN=MXI22.13 PE=1 SV=1 CANONICAL=Q9FK31-1" }, "isoforms": [ { "isoform_ac": "Q9FK31-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK31/entry#Q9FK31-1", "sequence": { "sequence": "MSNSSDKTLEDEKVQQQQLESDDKISNTNQRTEPSQEWETMARAWVSAFPDAKAVVSAGEVETWIGTNLDSLPADLRHMPRSEIVDRLLSIQHYMRPTPSSDQNEQNVEADQQHPARFQRTDQWLPVYSWLESLDNGELVKSKDISEWLDANPEVKQELSSRHSRYHLTHYVKKCHLKILKRKEKKGLIRLSRATAMEVHKEFGEKHHATLSADPMSNIPKDSDLYRTKQKEAKRRFEILVELEKRLAPHFAKPRIGNR", "length": 259, "header": "tr|Q9FK31-1|Q9FK31_ARATH Isoform 1 of Ribonucleoside-diphosphate reductase subunit beta OS=Arabidopsis thaliana OX=3702 GN=MXI22.13 PE=1 SV=1 CANONICAL=Q9FK31-1" }, "locus": { "chromosome": "5", "start_pos": 20528068, "end_pos": 20529885, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G50410.1", "url": "https://www.ensemblgenomes.org/id/AT5G50410.1" }, { "database": "Ensembl Peptide", "id": "AT5G50410.1", "url": "https://www.ensemblgenomes.org/id/AT5G50410.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 98, "start_aa": "Thr", "end_pos": 98, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr98", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 26, "end_pos": 26, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser26" }, { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr32" }, { "start_pos": 35, "end_pos": 35, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser35" }, { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser4" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FK31", "url": "https://www.uniprot.org/uniprotkb/Q9FK31" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FK31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FK31" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FK31", "url": "https://www.uniprot.org/uniprotkb/Q9FK31" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G50410", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50410", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FK31", "url": "https://www.uniprot.org/uniprotkb/Q9FK31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 98 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 4, 26, 32, 35 ], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", 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], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MXI22.6", "url": "https://www.uniprot.org/uniprotkb/Q9FK37", "locus": {} } ], "crossref": [ { "id": "AT5G50350", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G50350", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835102", "url": "https://www.ncbi.nlm.nih.gov/gene/835102", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FK37", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FK37*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT5G50350", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G50350", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SMDRHRW", "url": "https://omabrowser.org/oma/group/SMDRHRW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34466:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34466:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199846", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G50350", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G50350", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FK37", "url": "https://www.uniprot.org/uniprotkb/Q9FK37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FK37-1", "url": "https://www.uniprot.org/uniprotkb/Q9FK37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FKA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKA3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKA3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": 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"length": 1190, "header": "tr|Q9FKB9-1|Q9FKB9_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKB9-1" }, "locus": { "chromosome": "5", "start_pos": 19773117, "end_pos": 19777242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48770.1", "url": "https://www.ensemblgenomes.org/id/AT5G48770.1" }, { "database": "Ensembl Peptide", "id": "AT5G48770.1", "url": "https://www.ensemblgenomes.org/id/AT5G48770.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 475, "end_pos": 475, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser475" }, { "start_pos": 514, "end_pos": 514, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser514" }, { "start_pos": 515, "end_pos": 515, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr515" }, { "start_pos": 524, "end_pos": 524, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr524" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FKB9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKB9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G48770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48770", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FKB9", "url": "https://www.uniprot.org/uniprotkb/Q9FKB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1089, "end_pos": 1091, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1178, "end_pos": 1180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 847, "end_pos": 849, "annotation": "n_glycosylation_sequon" }, { "start_pos": 923, "end_pos": 925, "annotation": "n_glycosylation_sequon" }, { "start_pos": 967, "end_pos": 969, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", 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A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKC9", "url": "https://www.uniprot.org/uniprotkb/Q9FKC9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKC9", "url": "https://www.uniprot.org/uniprotkb/Q9FKC9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37980", "resource": "KEGG Pathway" } ], "orthologs": [ { 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"MANICIATTATNNQVILRDYVSGFPKQSDLYIATTTIDLRVPPGSMAVLVKNLYLSCDPHSRTRMGKPDPSSQASMAHAFTIGKPISGFGVAKAIDSGHPNYKTGDLLWGRVGWEEYSVITPTPSSHFKIHHTDVPLSFYTGLLGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKVDLLKTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGKMLDAVLQNMRTHGRIAACGMISQYNLKEPEGLHNTATIVHKRIRVQDFAAVEFFDRYSKFLDFILPHVREGKITYVEDIAQGLENGPSALIGLFHGKNVGKQLVEVARE", "length": 353, "header": "tr|Q9FKD2-1|Q9FKD2_ARATH Isoform 1 of Zinc-binding dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FKD2-1" }, "isoforms": [ { "isoform_ac": "Q9FKD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKD2/entry#Q9FKD2-1", "sequence": { "sequence": 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A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKD2", "url": "https://www.uniprot.org/uniprotkb/Q9FKD2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKD2", "url": "https://www.uniprot.org/uniprotkb/Q9FKD2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G37940", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G37940", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kaneko T, Kotani H, Nakamura Y, Sato S, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FKJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FKJ1" } ], "reference": [ { "type": "PubMed", "id": "9679202", "url": "https://glygen.org/publication/PubMed/9679202" } ] } ], "pathway": [ { "id": "ath:AT5G60560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G60560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FKJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FKJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"categories": [ "Protein Classification" ] }, { "id": "PF06830", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06830", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_200861", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200861", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G60530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G60530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FKJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FKJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKJ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FKJ4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": 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"https://www.uniprot.org/uniprotkb/Q9FKL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATTSSTKQVIVFTISLLLVAFQAVHADYYRQRPPVTPTPYVPKPRYPLPSPSPKPVYRPPTTPSLPAGSIARLFLDPHNALRSGLGLPPLIWDGKLASYATWWANQRRYDCSLTHSTGPYGENLFWGSGSSWAPGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMVWRDTKRLGCARVVCENGAGVFITCNYDPPGNYVGEKPY", "length": 207, "header": "tr|Q9FKL1-1|Q9FKL1_ARATH Isoform 1 of Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=ATCAPE5 PE=1 SV=1 CANONICAL=Q9FKL1-1" }, "isoforms": [ { "isoform_ac": "Q9FKL1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKL1/entry#Q9FKL1-1", "sequence": { "sequence": "MATTSSTKQVIVFTISLLLVAFQAVHADYYRQRPPVTPTPYVPKPRYPLPSPSPKPVYRPPTTPSLPAGSIARLFLDPHNALRSGLGLPPLIWDGKLASYATWWANQRRYDCSLTHSTGPYGENLFWGSGSSWAPGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMVWRDTKRLGCARVVCENGAGVFITCNYDPPGNYVGEKPY", "length": 207, "header": "tr|Q9FKL1-1|Q9FKL1_ARATH Isoform 1 of Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=ATCAPE5 PE=1 SV=1 CANONICAL=Q9FKL1-1" }, "locus": { "chromosome": "5", "start_pos": 23337832, "end_pos": 23338855, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G57625.1", "url": "https://www.ensemblgenomes.org/id/AT5G57625.1" }, { "database": "Ensembl Peptide", "id": "AT5G57625.1", "url": "https://www.ensemblgenomes.org/id/AT5G57625.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 37, "start_aa": "Thr", "end_pos": 37, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr37", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 39, "start_aa": "Thr", "end_pos": 39, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr39", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKL1", "url": "https://www.uniprot.org/uniprotkb/Q9FKL1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKL1", "url": "https://www.uniprot.org/uniprotkb/Q9FKL1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G57625", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G57625", "resource": "KEGG Pathway" } ], "orthologs": [], 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"reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FKL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKL1" }, { "id": "SM00198", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00198" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCP", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 203, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 37, 39 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": 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"table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FKL7-1", "uniprot_ac": "Q9FKL7", "uniprot_id": "Q9FKL7_ARATH", "mass": { "chemical_mass": 15015.0, "monoisotopic_mass": 15015.0 }, "refseq": { "ac": "NP_200565", "name": "GCK domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200565" }, "gene_names": [ { "name": "MUA2.15", "type": "recommended", "evidence": [ { "id": "Q9FKL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKL7" } ] }, { "name": "MUA2.15", "type": "synonym", "evidence": [ { "id": "NP_200565", "database": 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"MGIASSVSMAYSDEDPSANQGQFSRDEDESRTLIEDLNETGEGKGEEEESGECRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAKFKTCMYENPVYYEPILAGEARAIAKMLNGVASRKGGHSCR", "length": 136, "header": "tr|Q9FKL7-1|Q9FKL7_ARATH Isoform 1 of GCK domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MUA2.15 PE=4 SV=1 CANONICAL=Q9FKL7-1" }, "isoforms": [ { "isoform_ac": "Q9FKL7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKL7/entry#Q9FKL7-1", "sequence": { "sequence": "MGIASSVSMAYSDEDPSANQGQFSRDEDESRTLIEDLNETGEGKGEEEESGECRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAKFKTCMYENPVYYEPILAGEARAIAKMLNGVASRKGGHSCR", "length": 136, "header": "tr|Q9FKL7-1|Q9FKL7_ARATH Isoform 1 of GCK domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MUA2.15 PE=4 SV=1 CANONICAL=Q9FKL7-1" }, "locus": { "chromosome": "5", "start_pos": 23313401, "end_pos": 23314432, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G57570.1", "url": "https://www.ensemblgenomes.org/id/AT5G57570.1" }, { "database": "Ensembl 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32009:SF115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32009:SF115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001031980", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031980", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G38344", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G38344", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKM8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSSFLSGFCAAAITFFTLFGTIYFMFYRKGKSHQENKTIASSLISISSTPSSLPRKRKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGEHSRNWLAFWIYILL", "length": 213, "header": "tr|Q9FKM8-1|Q9FKM8_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKM8-1" }, "isoforms": [ { "isoform_ac": "Q9FKM8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8/entry#Q9FKM8-1", "sequence": { "sequence": "MDSSFLSGFCAAAITFFTLFGTIYFMFYRKGKSHQENKTIASSLISISSTPSSLPRKRKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGEHSRNWLAFWIYILL", "length": 213, "header": "tr|Q9FKM8-1|Q9FKM8_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FKM8-1" }, "locus": { "chromosome": "5", "start_pos": 15325785, "end_pos": 15327160, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38344.1", "url": "https://www.ensemblgenomes.org/id/AT5G38344.1" }, { "database": "Ensembl Peptide", "id": "AT5G38344.1", "url": "https://www.ensemblgenomes.org/id/AT5G38344.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 50, "start_aa": "Thr", "end_pos": 50, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr50", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G38344", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38344", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FKM8", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FKM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKM8" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 213, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], 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"monoisotopic_mass": 21289.0 }, "refseq": { "ac": "NP_198647", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198647" }, "gene_names": [ { "name": "MSI17.4", "type": "recommended", "evidence": [ { "id": "Q9FKN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKN2" } ] }, { "name": "MSI17.4", "type": "synonym", "evidence": [ { "id": "NP_198647", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198647" } ] }, { "name": "MSI17_4", "type": "synonym", "evidence": [ { "id": "NP_198647", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198647" }, { "id": "Q9FKN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKN2" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9FKN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKN2/entry#names_and_taxonomy" } ] }, { "name": 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OS=Arabidopsis thaliana OX=3702 GN=MSI17.4 PE=4 SV=1 CANONICAL=Q9FKN2-1" }, "isoforms": [ { "isoform_ac": "Q9FKN2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKN2/entry#Q9FKN2-1", "sequence": { "sequence": "MSLKSRVTSTSSHNLHHSEERVPLRSDSDQSCLNSSPEFDFCLRQNSKQRFSHADELFSYWKNLSHTATDTISKKTEITSPRSNLQTLAAKSDTRDSDSDDPSFGCGFWLVRSKSVGYSMRNKKTNSSSEYQRSNSDPHKKKKKKSLQKMNSTEIRASRSMNSPALNVPLADIFCLGPVFSGSRDRRK", "length": 188, "header": "tr|Q9FKN2-1|Q9FKN2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MSI17.4 PE=4 SV=1 CANONICAL=Q9FKN2-1" }, "locus": { "chromosome": "5", "start_pos": 15310405, "end_pos": 15311377, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38310.1", "url": "https://www.ensemblgenomes.org/id/AT5G38310.1" }, { "database": "Ensembl Peptide", "id": "AT5G38310.1", "url": "https://www.ensemblgenomes.org/id/AT5G38310.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 119, "end_pos": 119, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKN2" } ], "site_lbl": "Ser119" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, 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"type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKN2", "url": "https://www.uniprot.org/uniprotkb/Q9FKN2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G38310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FKR3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FKR3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G38730", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G38730", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKR3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREMNRSEVL", "length": 596, "header": "sp|Q9FKR3-1|PP404_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FKR3-1" }, "isoforms": [ { "isoform_ac": "Q9FKR3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3/entry#Q9FKR3-1", "sequence": { "sequence": "MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREMNRSEVL", "length": 596, "header": "sp|Q9FKR3-1|PP404_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FKR3-1" }, "locus": { "chromosome": "5", "start_pos": 15510842, "end_pos": 15512934, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38730.1", "url": "https://www.ensemblgenomes.org/id/AT5G38730.1" }, { "database": "Ensembl Peptide", "id": "AT5G38730.1", "url": "https://www.ensemblgenomes.org/id/AT5G38730.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kaneko T, Kotani H, Nakamura Y, Sato S, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3" } ], "reference": [ { "type": "PubMed", "id": "9679202", "url": "https://glygen.org/publication/PubMed/9679202" } ] } ], "pathway": [ { "id": "ath:AT5G38730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FKR3", "url": "https://www.uniprot.org/uniprotkb/Q9FKR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FKR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 596, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FKR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FKR3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 591, "end_pos": 593 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FKS6-1", "uniprot_ac": "Q9FKS6", "uniprot_id": "Q9FKS6_ARATH", "mass": { "chemical_mass": 30698.0, "monoisotopic_mass": 30698.0 }, "refseq": { "ac": "NP_198896", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198896" }, "gene_names": [ { "name": "AITR4", "type": "recommended", "evidence": [ { "id": "Q9FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6" } ] }, { "name": "MHK7.3", "type": "synonym", "evidence": [ { "id": "NP_198896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198896" }, { "id": "Q9FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6" } ] }, { "name": "MHK7_3", "type": "synonym", "evidence": [ { "id": "NP_198896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198896" }, { "id": "Q9FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6" } ] } ], "protein_names": [ { "name": "DUF7950 domain-containing protein", "type": "recommended", "evidence": [ { "id": "Q9FKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_198896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198896" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKS6", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "AITR4", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6", "locus": {} } ], "crossref": [ { "id": "AT5G40800", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G40800", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834080", "url": "https://www.ncbi.nlm.nih.gov/gene/834080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR057710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G40800", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40800", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TWLKFNG", "url": "https://omabrowser.org/oma/group/TWLKFNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33595", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33595", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33595:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33595:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_198896", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198896", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G40800", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G40800", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FKS6", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FKS6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQDHELWRTLRCAGKAQDKTSVDTLMLKYRPIAPKPTTTGQPLVGDTSSTRRTKRKYVRVSKNNKATCRSKTNGFRSSSTDPENGREDIVTLQLLPERSTPLSLDHNNLDPTVETINGDETCNTDTWLKFNGGDDALQQVPVETWVTVESVNSGLVSHAVGLTDEELTYALDKDTCPGFISDGSNRVVMVNEAYRRIVTGDGGFGREVIVWLVVDQTATFCDYRTFTCKVRMEYTWRETKYTKTLPCDVWKMEFGGFAWRLDTTAALTLWL", "length": 272, "header": "tr|Q9FKS6-1|Q9FKS6_ARATH Isoform 1 of DUF7950 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AITR4 PE=1 SV=1 CANONICAL=Q9FKS6-1" }, "isoforms": [ { "isoform_ac": "Q9FKS6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FKS6/entry#Q9FKS6-1", "sequence": { "sequence": "MDQDHELWRTLRCAGKAQDKTSVDTLMLKYRPIAPKPTTTGQPLVGDTSSTRRTKRKYVRVSKNNKATCRSKTNGFRSSSTDPENGREDIVTLQLLPERSTPLSLDHNNLDPTVETINGDETCNTDTWLKFNGGDDALQQVPVETWVTVESVNSGLVSHAVGLTDEELTYALDKDTCPGFISDGSNRVVMVNEAYRRIVTGDGGFGREVIVWLVVDQTATFCDYRTFTCKVRMEYTWRETKYTKTLPCDVWKMEFGGFAWRLDTTAALTLWL", "length": 272, "header": "tr|Q9FKS6-1|Q9FKS6_ARATH Isoform 1 of DUF7950 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AITR4 PE=1 SV=1 CANONICAL=Q9FKS6-1" }, "locus": { "chromosome": "5", "start_pos": 16334581, "end_pos": 16336017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40800.1", "url": "https://www.ensemblgenomes.org/id/AT5G40800.1" }, { "database": "Ensembl Peptide", "id": "AT5G40800.1", "url": "https://www.ensemblgenomes.org/id/AT5G40800.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, 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Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FKU6", "url": "https://www.uniprot.org/uniprotkb/Q9FKU6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FKU6", "url": "https://www.uniprot.org/uniprotkb/Q9FKU6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, 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Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FL00", "url": "https://www.uniprot.org/uniprotkb/Q9FL00" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze 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"authors" ] } ] }, { "uniprot_canonical_ac": "Q9FL31-1", "uniprot_ac": "Q9FL31", "uniprot_id": "Q9FL31_ARATH", "mass": { "chemical_mass": 24591.0, "monoisotopic_mass": 24591.0 }, "refseq": { "ac": "NP_199442", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199442" }, "gene_names": [ { "name": "MPL12.8", "type": "recommended", "evidence": [ { "id": "Q9FL31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL31" } ] }, { "name": "MPL12.8", "type": "synonym", "evidence": [ { "id": "NP_199442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199442" } ] }, { "name": "MPL12_8", "type": "synonym", "evidence": [ { "id": "NP_199442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199442" }, { "id": "Q9FL31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL31" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ 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"evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46300.1", "url": "https://www.ensemblgenomes.org/id/AT5G46300.1" }, { "database": "Ensembl Peptide", "id": "AT5G46300.1", "url": "https://www.ensemblgenomes.org/id/AT5G46300.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 166, "end_pos": 166, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL31" } ], "site_lbl": "Ser166" }, { "start_pos": 174, "end_pos": 174, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL31", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL31" } ], "site_lbl": "Thr174" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", 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Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FL31", "url": "https://www.uniprot.org/uniprotkb/Q9FL31" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FL31", "url": "https://www.uniprot.org/uniprotkb/Q9FL31" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FL31", "url": "https://www.uniprot.org/uniprotkb/Q9FL31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"length": 1205, "header": "tr|Q9FL35-1|Q9FL35_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MPL12.4 PE=4 SV=1 CANONICAL=Q9FL35-1" }, "isoforms": [ { "isoform_ac": "Q9FL35-1", "url": "https://www.uniprot.org/uniprotkb/Q9FL35/entry#Q9FL35-1", "sequence": { "sequence": "MASSSSSRNWLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYGVDPSQVRYQIGEFGKIFEKTCKRQTEEVKNQWKKALTHVANMLGFDSSKWDDEAKMIEEIANDVLRKLLLTTSKDFEDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQVRKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDHLGVLGERLQHQKVLIIIDDVDDQVILDSLVGKTQWFGNGSRIIVVTNNKHFLTAHGIDRMYEVSLPTEEHALAMLCQSAFKKKSPPEGFEMLVVQVARYAGSLPLVLKVLGSYLSGKDKEYWIDMLPRLQNGLNDKIERILRISYDGLESEDQAIFRHIACIFNHMEVTTIKSLLANSIYGANVGLQNLVDKSIIHVRWGHVEMHPLLQEMGRKIVRTQSIGKPRKREFLVDPNDICDVLSEGIDTQKVLGISLETSKIDELCVHESAFKRMRNLRFLKIGTDIFGEENRLHLPESFDYLPPTLKLLCWSEFPMRCMPSNFCPKNLVTLKMTNSKLHKLWEGAVPLTCLKEMDLDGSVNLKEIPDLSMATNLETLNFENCKSLVELPSFIQNLNKLLKLNMAFCNSLETLPTGFNLKSLNRIDFTKCSKLRTFPDFSTNISDLYLTGTNIEELPSNLHLENLIDLRISKKEIDGKQWEGVMKPLKPLLAMLSPTLTSLQLQNIPNLVELPCSFQNLIQLEVLDITNCRNLETLPTGINLQSLDSLSFKGCSRLRSFPEISTNISSLNLEETGIEEVPWWIDKFSNLGLLSMDRCSRLKCVSLHISKLKRLGKVDFKDCGALTIVDLCGCPIGMEMEANNIDTVSKVKLDFRDCFNLDPETVLHQESIIFKYMLFPGKEEMPSYFTYRTTGSSSLTIPLLHLPLSQPFFRFRVGALVTNVKHGKNIKVKCEFKDRFGNSFHVGSDDFYVYLLFTKSQKGSQMLTILDCCIPLNEGNASLAQGNYYDHVDINIHISSGGWRSTFELKEWGIRLLEEDSSSAENGLGNPNSTLPHVSEAEEGNMGYYTPLQEGLVNEIEHSEESGDINVGTKRSKKRMRPKKTIWGIHRFKNLLRSRKRMRVSIKNERPLKKSRTRPASIPRTGRNT", "length": 1205, "header": "tr|Q9FL35-1|Q9FL35_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=MPL12.4 PE=4 SV=1 CANONICAL=Q9FL35-1" }, "locus": { "chromosome": "5", "start_pos": 18758699, "end_pos": 18763503, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46260.1", "url": "https://www.ensemblgenomes.org/id/AT5G46260.1" }, { "database": "Ensembl Peptide", "id": "AT5G46260.1", "url": "https://www.ensemblgenomes.org/id/AT5G46260.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 425, "end_pos": 425, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL35", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL35" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser425" }, { "start_pos": 426, "end_pos": 426, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL35", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL35" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr426" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FL35", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL35" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "Q9FL35", "url": "https://www.uniprot.org/uniprotkb/Q9FL35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1056, "end_pos": 1058, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1108, "end_pos": 1110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 720, "end_pos": 722, "annotation": "n_glycosylation_sequon" }, { "start_pos": 843, "end_pos": 845, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", "Q9M285-1", "F4IMF2-1", "F4KD45-1", "F4J910-1", "O65507-1", "Q9FHF6-1", "Q8LFT2-1", "Q9M8X8-1", "Q9CAK0-1", "Q9FKR7-1", "F4I901-1", "F4JNB2-1", "A0A1P8B8A2-1", "Q9FHF4-1", "Q9FHG0-1", "Q9CAD9-1", "F4JNB9-1", "F4JWL7-1", "F4JWL8-1", "F4JYI4-1", "F4KFY5-1", "F4I9F1-1", "Q9CAE0-1", "Q9CAD8-1", "Q9FFS5-1", "Q9FGT2-1", "Q9FJG4-1", "Q9FL35-1", "Q9FXA6-1", "Q9LSX5-1", "Q9ZVX6-1" ], "evidence": [ { "id": "16301", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16301" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A1P8AT27", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] } ] }, { "uniprot_ac": 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H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B8A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8A2" } ] } ] }, { "uniprot_ac": "A0A1P8B9V7", "gene_name": "MPL12.5", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8B9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9V7" } ] } ] }, { "uniprot_ac": "A0A1P8BDK2", "gene_name": "MDJ22.11", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8BDK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BDK2" } ] } ] }, { "uniprot_ac": "F4HT77", "gene_name": "RBA1", "activity": [ { "ec_number": "3.2.2.-", "activity": "", "evidence": [ { "id": "F4HT77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HT77" } ] }, { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "F4HT77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HT77" } ] } ] }, { "uniprot_ac": "F4I270", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "F4I270", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I270" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": 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Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FL37", "url": "https://www.uniprot.org/uniprotkb/Q9FL37" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FL37", "url": "https://www.uniprot.org/uniprotkb/Q9FL37" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46230", "resource": 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"MEGKRLDLRFHHSTSSQSVESAALDLDKNVYNHIKLASSSPLQPFPSGAQHPETSAAAAYFSWPTSSRLNDSAEDRANYFANLQKGVLPESFDGLPTGKKATTLLELMMIRAFHSKNLRRFSLGTAIGFRIRRGVLTNIAAILVFVARKVHKQWLNPLQCLPTALEGPGGVWCDVDVVEFQYYGAPAQTPKEQVYTELVDDLRGSGSSIGSGSQVASQETYGTLGAIVKSKTGIRQVGFLTNRHVAVDLDYPSQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNTNNVTTTVKGIGEIGDIHATDLQSPVNSLIGRKVVKVGRSSGLTTGTIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLAAGDEKNEKPRPVGIIWGGTANRGRLKLKVGEQPENWTSGVDLGRVLNLLELDLITSNEGLQAAVLEQRNGIMCAAVDSTVVESSPGVCNISRCKTGENFEPINLNVQQVLIEDDNSNIHPEFQIEDVLESVAVIEEHQFIPSSSNNGSALHQKPNGPENLESKNLSSLKTSSSGDEIGFSLQLGESDTKKRKRTDSPDGSQEDEE", "length": 607, "header": "tr|Q9FL94-1|Q9FL94_ARATH Isoform 1 of Trypsin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FL94-1" }, "locus": { "chromosome": "5", "start_pos": 18172410, "end_pos": 18176207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45030.2", "url": "https://www.ensemblgenomes.org/id/AT5G45030.2" }, { "database": "Ensembl Peptide", "id": "AT5G45030.2", "url": "https://www.ensemblgenomes.org/id/AT5G45030.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FL94", "url": "https://www.uniprot.org/uniprotkb/Q9FL94" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FL94", "url": "https://www.uniprot.org/uniprotkb/Q9FL94" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G45030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G45030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FL94", "url": "https://www.uniprot.org/uniprotkb/Q9FL94" } ], "pmid": "" } ] } ] }, "pro_annotation": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FL95-1", "uniprot_ac": "Q9FL95", "uniprot_id": "Q9FL95_ARATH", "mass": { "chemical_mass": 37343.0, "monoisotopic_mass": 37343.0 }, "refseq": {}, "gene_names": [ { "name": "K21C13.21", "type": "synonym", "evidence": [ { "id": "Q9FL95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL95" } ] }, { "name": "K21C13_21", "type": "synonym", "evidence": [ { "id": "Q9FL95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL95" } ] } ], "protein_names": [ { "name": "Glutathione S-transferase family protein", "type": "synonym", "evidence": [ { "id": "Q9FL95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { 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"Organism-specific" ] }, { "id": "Q9FL95", "url": "https://www.uniprot.org/uniprotkb/Q9FL95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FL95-1", "url": "https://www.uniprot.org/uniprotkb/Q9FL95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSGVDETSESGAFVRTASTFRNFVSQDPDSQFPAESGRYHLYISYACPWACRCLSYLKIKGLDEAITFSSVHAIWGRTKETDDHRGWVFPDSDTELPGAEPDYLNGAKSVRELYEIASPNYEGKYTVPVLWDKKLKTVVNNESSEIIRMFNTEFNGIAKTPSLDLYPSHLRDVINETNGWVFNGINNGVYKCGFARKQEPYNEAVNQLYEAVDRCEEVLGKQRYICGNTFTEADIRLFVTLIRFDEVYAVHFKCNKRLLREYPNIFNYIKDIYQIHGMSSTVNMEHIKQHYYGSHPTINPFGIIPHGPNIDYSSPHDRDRFSS", "length": 325, "header": "tr|Q9FL95-1|Q9FL95_ARATH Isoform 1 of Glutathione S-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FL95-1" }, "isoforms": [ { "isoform_ac": "Q9FL95-1", "url": "https://www.uniprot.org/uniprotkb/Q9FL95/entry#Q9FL95-1", "sequence": { "sequence": "MARSGVDETSESGAFVRTASTFRNFVSQDPDSQFPAESGRYHLYISYACPWACRCLSYLKIKGLDEAITFSSVHAIWGRTKETDDHRGWVFPDSDTELPGAEPDYLNGAKSVRELYEIASPNYEGKYTVPVLWDKKLKTVVNNESSEIIRMFNTEFNGIAKTPSLDLYPSHLRDVINETNGWVFNGINNGVYKCGFARKQEPYNEAVNQLYEAVDRCEEVLGKQRYICGNTFTEADIRLFVTLIRFDEVYAVHFKCNKRLLREYPNIFNYIKDIYQIHGMSSTVNMEHIKQHYYGSHPTINPFGIIPHGPNIDYSSPHDRDRFSS", "length": 325, "header": "tr|Q9FL95-1|Q9FL95_ARATH Isoform 1 of Glutathione S-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FL95-1" }, "locus": { "chromosome": "5", "start_pos": 18168528, "end_pos": 18170775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G45020.2", "url": "https://www.ensemblgenomes.org/id/AT5G45020.2" }, { "database": "Ensembl Peptide", "id": "AT5G45020.2", "url": "https://www.ensemblgenomes.org/id/AT5G45020.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FL95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FL95" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser4" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, 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"MEECDYINELPDSLLTQILLDLRTKDSVKTSVSSKRWRNLWLNVPGLDLFSLQFTNPHHEEGLIKFMDRFMESNCRSRLQKFMIRYFECNGYRDRFMELIGTVVDCGIQHLYVYMHTCNRVDFIRQNIYKSKTLVSLKLYNVELKNPDFVVSLPCLKILKLMKICYGEDGPLVVEKLISGCPVLEDLELIKPFDILTQDVILFLRVSSQTLKSLRLYFATNGSVEIDAPRLKYMTFYESRFDRIMVKNMSSLFSIEIRAKSSFEYGGLLKAEDPRKRAIICDFLTVISSVRHMIISGSILEELHSYSKLGWIPQFRNLYHLQASFFGTSLQLLPTFLESCPNLKNLIMDYGAFKEENIDFHEVPQCLISTLEYVHINKLMMMEQSGIKLVNYFIENSAVLKKLTLRFSFFSSIESESYKKLLTSTKLSPTCQVIFV", "length": 436, "header": "sp|Q9FLA1-1|FDL35_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At5g44960 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FLA1-1" }, "isoforms": [ { "isoform_ac": "Q9FLA1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLA1/entry#Q9FLA1-1", "sequence": { "sequence": 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Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kaneko T, Kotani H, Nakamura Y, Sato S, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FLA1", "url": "https://www.uniprot.org/uniprotkb/Q9FLA1" } ], "reference": [ { "type": "PubMed", "id": "9679202", "url": "https://glygen.org/publication/PubMed/9679202" } ] } ], "pathway": [ { "id": "ath:AT5G44960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G44960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { 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"start_pos": 221, "end_pos": 223 }, { "start_pos": 248, "end_pos": 250 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G39880", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FLE6", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLE6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARISLLFSLAFVLALGSVFLSVSGHAPPVTPRKSACPKTVSELQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYLESLYKFENPIVDVLGIAKTRYTLMNKAILAAQASVGGKVNKKTSLKLKKSYADLTKGFLRIKETIVKISAKHDYQADAKITAHEAKKLNHAMISFKNSINAFMNVVNNLENKKMKKIGLHARALGENREKVRNAFKSFFKKFGGYLGGKTHRRELTEAKYNADSHVGADVKGFESIIDKFSDFFNGYLGGHRRELFYQVPAGEFADEKIAIHASLDAKAHGRKGIRRELYAQAPLFKNFFNVGFGGKAQYDAAGKMKVAGDDGFRSLNRAHVKHFASTEA", "length": 363, "header": "tr|Q9FLE6-1|Q9FLE6_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MYH19.7 PE=1 SV=1 CANONICAL=Q9FLE6-1" }, "isoforms": [ { "isoform_ac": "Q9FLE6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6/entry#Q9FLE6-1", "sequence": { "sequence": "MARISLLFSLAFVLALGSVFLSVSGHAPPVTPRKSACPKTVSELQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYLESLYKFENPIVDVLGIAKTRYTLMNKAILAAQASVGGKVNKKTSLKLKKSYADLTKGFLRIKETIVKISAKHDYQADAKITAHEAKKLNHAMISFKNSINAFMNVVNNLENKKMKKIGLHARALGENREKVRNAFKSFFKKFGGYLGGKTHRRELTEAKYNADSHVGADVKGFESIIDKFSDFFNGYLGGHRRELFYQVPAGEFADEKIAIHASLDAKAHGRKGIRRELYAQAPLFKNFFNVGFGGKAQYDAAGKMKVAGDDGFRSLNRAHVKHFASTEA", "length": 363, "header": "tr|Q9FLE6-1|Q9FLE6_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=MYH19.7 PE=1 SV=1 CANONICAL=Q9FLE6-1" }, "locus": { "chromosome": "5", "start_pos": 15970887, "end_pos": 15972344, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G39880.1", "url": "https://www.ensemblgenomes.org/id/AT5G39880.1" }, { "database": "Ensembl Peptide", "id": "AT5G39880.1", "url": "https://www.ensemblgenomes.org/id/AT5G39880.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 31, "start_aa": "Thr", "end_pos": 31, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr31", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLE6", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLE6", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G39880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FLE6", "url": "https://www.uniprot.org/uniprotkb/Q9FLE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 31 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": 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"https://www.uniprot.org/uniprotkb/Q9FLE8" } ] } ], "protein_names": [ { "name": "Uncharacterized protein At5g39865", "type": "recommended", "evidence": [ { "id": "Q9FLE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8/entry#names_and_taxonomy" } ] }, { "name": "Glutaredoxin family protein", "type": "synonym", "evidence": [ { "id": "NP_680368", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680368" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLE8", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8", "locus": {} } ], "crossref": [ { "id": "Q9FLE8", "url": "https://alphafold.ebi.ac.uk/entry/Q9FLE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G39865", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G39865", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd03031", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03031", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "833983", "url": "https://www.ncbi.nlm.nih.gov/gene/833983", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G39865", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39865", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCEMVED", "url": "https://omabrowser.org/oma/group/DCEMVED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45669", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45669:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45669:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23733", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23733", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FLE8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FLE8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_680368", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680368", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G39865", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G39865", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FLE8", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLE8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCASSKNRNRCRNCKGGLSPVIVPRSYSMHVHHPAQHTGDSYHTVALTSSTIGSLSLCDSSLRHFHKHLEDSFYKQRVSDQMGEETLISGNGFLHGDEEKMNLDLQAKVIEAKVWSSTINEKIPKIVAKTPIVTPPGEPETINTWELMEGLEDVSPLRSPNHLRSFSFDFVRIQPSHDHDHDVAVSFDLPKSRFHENVKSSCRVDDLDPPDIVSRFKRKTLGKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCCE", "length": 390, "header": "sp|Q9FLE8-1|Y5986_ARATH Isoform 1 of Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FLE8-1" }, "isoforms": [ { "isoform_ac": "Q9FLE8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLE8/entry#Q9FLE8-1", "sequence": { "sequence": "MGCASSKNRNRCRNCKGGLSPVIVPRSYSMHVHHPAQHTGDSYHTVALTSSTIGSLSLCDSSLRHFHKHLEDSFYKQRVSDQMGEETLISGNGFLHGDEEKMNLDLQAKVIEAKVWSSTINEKIPKIVAKTPIVTPPGEPETINTWELMEGLEDVSPLRSPNHLRSFSFDFVRIQPSHDHDHDVAVSFDLPKSRFHENVKSSCRVDDLDPPDIVSRFKRKTLGKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCCE", "length": 390, "header": "sp|Q9FLE8-1|Y5986_ARATH Isoform 1 of Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FLE8-1" }, "locus": { "chromosome": "5", "start_pos": 15965301, "end_pos": 15967186, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G39865.1", "url": "https://www.ensemblgenomes.org/id/AT5G39865.1" }, { "database": "Ensembl Peptide", "id": "AT5G39865.1", "url": "https://www.ensemblgenomes.org/id/AT5G39865.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 168, "end_pos": 168, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLE8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser168" }, { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLE8" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser20" }, { "start_pos": 73, "end_pos": 73, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLE8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser73" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa 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Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLG3", "url": "https://www.uniprot.org/uniprotkb/Q9FLG3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLG3", "url": "https://www.uniprot.org/uniprotkb/Q9FLG3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G64550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G64550", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FLG3", "url": "https://www.uniprot.org/uniprotkb/Q9FLG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": 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"tr|Q9FLH9-1|Q9FLH9_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MIO24.6 PE=4 SV=1 CANONICAL=Q9FLH9-1" }, "isoforms": [ { "isoform_ac": "Q9FLH9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLH9/entry#Q9FLH9-1", "sequence": { "sequence": "MGETTKGDATKPPPNQISSPKDSSLDHQAPNPSLLHHHHHHHQSFLPTPIFIPTVSSPGAPVIPKRPRFSTSSGLSPPQWKALPSPSTVPTASTISSSPTPSTAVVTASSTETAGSSPPGQEATNSEKQQQPKTESFQHKFRKGKYVSPVWKPNEMLWLARAWRAQYQTQGTGSGSGSVEGRGKTRAEKDREVAEYLNRHGINRDSKIAGTKWDNMLGEFRKVYEWEKCGDQDKYGKSYFRLSPYERKQHRLPASFDEEVYQELALFMGPRVRAPTINRGGGGGATVTVASTPPSVEALPPPLYPALMTSRDEYDIENNPIPSIGRGKRLALSLVGDDHHPQYPYAHNIARGSGLFSNKSLYNPFFEMIPSSSSSSSSLRDLRRIGKIRLTWEESVNLWAEGEVDYGRIRVSGSSFLNADELTYLDDSMVACTMESFQDGPLKGFSLDKFISGQHLKVFGRQRSTSSSAPSPSVNVAGVFDRPQLQLSEPIYKSISTLEFQDPSEHCLSKLRVPAGNLPSLFELARYLQEPPPENLRFPLRPDVYKDLPQGKELFFSISSTELLDCRAITYDIIGPIMSRLNSNNGFVISSKDSLIPLWDDCINRMVSKFCEMAILRKPDSSSCIENVQHQWPNVIGYVKGFGLWRGEEADKVREGAADPSSLLAEKILWSYNDLPYILGYHAIGFTVTFCALSLSSQDRVICTDLYSFNVSSPSDRIKALVPCYRLASLLPLLADRCTTRPSCYNDFERIDRGDYVTELTPHTVTRYYSSKRKWLGVKGIYDFLDQRVPHAEHLDMASEKDLSLSFKPRGIRVKPRNIDQLIDSLMCVTKALLALHDLSFMHRDMGWDNVMRSTATTTTTTDTDWFVCGFDAAVEAPQLNPHRPADKVVDNEEREDERGRYAPEMERGLHAVKVDVWGVGYMIKTCGLSNVPKMLRDLQGKCLEPNQENRPTAADCFHHLLQVQSASTSSY", "length": 972, "header": "tr|Q9FLH9-1|Q9FLH9_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MIO24.6 PE=4 SV=1 CANONICAL=Q9FLH9-1" }, "locus": { "chromosome": "5", "start_pos": 21048191, "end_pos": 21052069, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G51800.1", "url": "https://www.ensemblgenomes.org/id/AT5G51800.1" }, { "database": "Ensembl Peptide", "id": "AT5G51800.1", "url": "https://www.ensemblgenomes.org/id/AT5G51800.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLH9", "url": "https://www.uniprot.org/uniprotkb/Q9FLH9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLH9", "url": "https://www.uniprot.org/uniprotkb/Q9FLH9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G51800", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G51800", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FLH9", "url": "https://www.uniprot.org/uniprotkb/Q9FLH9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "Q9FLH9", "url": "https://www.uniprot.org/uniprotkb/Q9FLH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 100 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 358, "end_pos": 360 }, { "start_pos": 710, "end_pos": 712 } ] }, "class_list": [], 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OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FLJ3-1" }, "locus": { "chromosome": "5", "start_pos": 24686610, "end_pos": 24687366, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61412.1", "url": "https://www.ensemblgenomes.org/id/AT5G61412.1" }, { "database": "Ensembl Peptide", "id": "AT5G61412.1", "url": "https://www.ensemblgenomes.org/id/AT5G61412.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, 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Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLK7", "url": "https://www.uniprot.org/uniprotkb/Q9FLK7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of 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339, "header": "tr|F4K217-1|F4K217_ARATH Computationally mapped isoform of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.23 PE=1 SV=1 CANONICAL=Q9FLK9-1" }, "locus": { "chromosome": "5", "start_pos": 24629256, "end_pos": 24632202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61240.2", "url": "https://www.ensemblgenomes.org/id/AT5G61240.2" }, { "database": "Ensembl Peptide", "id": "AT5G61240.2", "url": "https://www.ensemblgenomes.org/id/AT5G61240.2" } ] } }, { "isoform_ac": "Q9FLK9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLK9/entry#Q9FLK9-1", "sequence": { "sequence": "MASRCELLLICVFSLLIAFAHSKTLKRDVKALNEIKASLGWRVVYSWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLNLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDVGNNHLVGTIRELIRFDGSFPALRNLYLNNNYLSGGIPAQLSNLTNLEIVYLSYNKFIGNIPFAIAHIPKLTYLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVNPIGTHKVLEVSDADFAV", "length": 326, "header": "tr|Q9FLK9-1|Q9FLK9_ARATH Isoform 1 of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN=MFB13.23 PE=1 SV=1 CANONICAL=Q9FLK9-1" }, "locus": { "chromosome": "5", "start_pos": 24629258, "end_pos": 24632211, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G61240.1", "url": "https://www.ensemblgenomes.org/id/AT5G61240.1" }, { "database": "Ensembl Peptide", "id": "AT5G61240.1", "url": "https://www.ensemblgenomes.org/id/AT5G61240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, 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Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLK9", "url": "https://www.uniprot.org/uniprotkb/Q9FLK9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLK9", "url": "https://www.uniprot.org/uniprotkb/Q9FLK9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G61240", "name": "", "url": 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"Ensembl Peptide", "id": "AT5G41020.1", "url": "https://www.ensemblgenomes.org/id/AT5G41020.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLM7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser107" }, { "start_pos": 225, "end_pos": 225, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLM7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr225" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLM7", "url": "https://www.uniprot.org/uniprotkb/Q9FLM7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FLM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLM7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLM7", "url": "https://www.uniprot.org/uniprotkb/Q9FLM7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41020", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286YBY6-1", "protein_name": "Transcription termination factor 1", "gene_name": "ttf1.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDEMPSLSSNDCNDRVGGKKVKKKKKRSKSTEQHELTESPQEQTEKRRKKKKRRNSIQETDSNLQTKKRRKLDKEGETSVMDDGVSNQHEEQTQELQGSREGKTSKRKKKREKLKQTQELQGSREGKTSKRKKKREKLKQTNCEDITKEQTDIRTEHEEEPNTSDPPDLIITDKKRESKTPKNNIDSKFMEELNEWVPKMKLRCKSYMNDIIRYELSRFKEFRKQGIEMRTGRFSTAENERLRQNVNNFMALTGVTDAVKLFFPSRYPKEANALRKLKKKHRFFESIADGIPRFCNDVYDRGARVYDDRNYKGHFSEEEVKLLLKYYKRYGRDFKKISDKTNRSCRSLESRLLFITERKGPWSSKEVQRLLRAVRDYVVSVLKSANPNQRKPKRVNKEILYKKLPWTKIAGQVKTRCWMTCKSKWMTILTARMSSGTTFRGRKSQEAKIKLIKAMYELQVEDAVDVPWEDLTAVFGDVLPSYVQSRWHKLKVNHVPDWKNKSFADIVDFLYENVLPGLVKDCEDLDDDELKVDQMNSFRLADIFQDINEDECCDSDEETGQQEKSSSA", "length": 568 }, "evidence": [ { "id": "Q9FLM7", "url": "https://omabrowser.org/oma/group/Q9FLM7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4A1Z7-1", "protein_name": "Transcription termination factor 1", "gene_name": "Ttf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F6QJN7-1", "protein_name": "Transcription termination factor 1", "gene_name": "TTF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERESSSLETQTPIFVKKKAKHSKHKDRHRRHSQESFRAAPLANEQCDITKSKKKRKASQRLVSSPLKITEICDETEMATSKPKKKKKRRKSASGVDEETGVAYILVDKENIENTPFRSDVDVVYVDASKEQKSTERPEVDEPHSGTKPLENTSEELHSEVRKKKKKKKHKKRQREVESWDAVQESPGASIALPRAASQEQEPQPQVDQEEGIVQLSMSAGHSKSRKRKRKHPDPPEFEALAAPERAQSVYSEGSRVADEVETSGGSQDSSGLKKKSKKRKRRSLESTVEPGDFSVPRRSSEDTPLDSLEGTLVEGSAKPRPQEENPQACSKKVQRSEPTNDDESNSAKDSVAKYLSEDSRDSEDPEVDLESAVKQLQEFIPDIKDRAATTIKRMYRDDLGRFKEFKAQGVTIKFGKFSVKENQQLEKNVQEFLSLTGIENADKLLYTDRYPEEKSVITDLKRKYAFRVHIGKGIARPWKLVYYRAKKMFDVNNYKGRYSKGDTEKLKIYQSLHGNDWKKIGEMVSRSSLSVALKFSQINGQINHGAWSKTETQKLIKAVEEVILKKMSPQELNEMDSKLQLNPEGRLSIVREKLYKGISWVEVEARVETRNWMQCKSKWTEILTKRMTNGRDVYRGVNALQAKINLIERLYEINVQDVNEIDWEDLASIIGDVPPSYVQTKFYKLKATCVPFWQKKTFPEIIDYLYETSLPLLKEKLEKKMEKKGTEIQAPAAPKPVFLFRDIFYYDDDDSEGEDRDEKS", "length": 761 }, "evidence": [ { "id": "Q9FLM7", "url": "https://omabrowser.org/oma/group/Q9FLM7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q15361-1", "protein_name": "Transcription termination factor 1", "gene_name": "TTF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQHLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFRKDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGSQAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVGSEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMPESLESAYPEGSQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFDSVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSADSGDADDSDADLGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFSVKENKQLEKNVEDFLALTGIESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYYRAKKMFDVNNYKGRYSEGDTEKLKMYHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSKLQENPESCLSIVREKLYKGISWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERLYEINVEDTNEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLEKMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII", "length": 905 }, "evidence": [ { "id": "Q9FLM7", "url": "https://omabrowser.org/oma/group/Q9FLM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q62187-1", "protein_name": "Transcription termination factor 1", "gene_name": "Ttf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGGTSKFKTHTETLYKKKKWSSVSEKRPQKCPSQCLESKQPQVSVLGKRRRASQTPAQETLESEWPQKAKRKKRRREPQTPAQETLESEWPQKAKKKKRRGEPQTPTQESLESEQPPVSLLGKRRRESQTPAQENSESEQPRKAKRRRKKRKGSQQPTSSLLKTPETFLKAKKTTSAHKKKKNSVLEVDMETGIILVDKENMENLLETSRKDVDIVYVDMSKGQRSAKVRETGELPAAKPQEHGCRELLGDVRSRKKQKHLQKVAPWDVVQGSQPESISLPPSEPLSSEDLEGKSTEAAVFCKKKSKKNVFRSQELEPIPDSLDDSETISERLDSTHHGGAVGAGEECESTKESHSIKKKSKKKKHKSVALATSSDSASVTDSKAKNALVDSSEGSGAVREEDVDHRPAEAEAQACSTEKHREAMQRLEPTHEEESNSESASNSAARHISEDRRESDDSDVDLGSAVRQLREFIPDIQERAATTIRRMYRDDLGRFKEFKAQGVAIRFGKFSAKENKQIEKNVQDFLSLTGIESADKLLYTDRYPEEKTLITNLKRKHAFRLHIGKGIARPWKLVYYRAKKIFDVNNYKGRYNEEDTKKLKAYHSLHGNDWKKIGAMVARSSLSVALKFSQIGGTRNQGAWSKAETQRLIKAVEDVILKKMSPQELRELDSKLQEDPEGRLSIVREKLYKGISWVEVEARVETRNWMQCKSKWTEILTKRMTHGGFVYRGVNALQAKITLIERLYELNVNDANEIDWEDLASAIGDVPPPFVQAKFYKLKAACVPFWQKKTFPEIIDYLYKNSLPLLKEKLDKKMKKKDGQIQTPAAPKQDFLFKDIFHCDDDSDEGSPEEPSASDVQ", "length": 859 }, "evidence": [ { "id": "Q9FLM7", "url": "https://omabrowser.org/oma/group/Q9FLM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FLM7", "url": "https://www.uniprot.org/uniprotkb/Q9FLM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FLM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLM7" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb-like", "eco_id": "ECO_0000259", "start_pos": 378, "end_pos": 420, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 107, 225 ], "sequon_annotation_sites": [ { "start_pos": 231, "end_pos": 233 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FLN1-1", "uniprot_ac": "Q9FLN1", "uniprot_id": "Q9FLN1_ARATH", "mass": { "chemical_mass": 7608.0, "monoisotopic_mass": 7608.0 }, "refseq": { "ac": "NP_198914", "name": "AT.I.24-6 protein, putative (DUF 3339)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198914" }, "gene_names": [ { "name": "MEE6.5", "type": "recommended", "evidence": [ { "id": "Q9FLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLN1" } ] }, { "name": "MEE6.5", "type": "synonym", "evidence": [ { "id": "NP_198914", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198914" } ] }, { "name": "MEE6_5", "type": "synonym", "evidence": [ { "id": "NP_198914", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198914" }, { "id": "Q9FLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLN1" } ] } ], "protein_names": [ { "name": "AT.I.24-6 protein, putative (DUF 3339)", "type": "synonym", "evidence": [ { "id": "NP_198914", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198914" }, { "id": "Q9FLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLN1", "url": "https://www.uniprot.org/uniprotkb/Q9FLN1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MEE6.5", "url": "https://www.uniprot.org/uniprotkb/Q9FLN1", "locus": {} } ], "crossref": [ { "id": "834100", "url": "https://www.ncbi.nlm.nih.gov/gene/834100", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G40980", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40980", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FQFPARY", "url": "https://omabrowser.org/oma/group/FQFPARY/", "database": "OMA", "categories": [ "Protein 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"NP_200338", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200338", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G55270", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G55270", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FLN7", "url": "https://www.uniprot.org/uniprotkb/Q9FLN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLN7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLLNQPLKLCFQSKPGLVRSSPPLSNGFSTSKLQTPPCTVIDADPCGRGLGKLFIYYHNESEYTGLEKKVAMDLVDIPMATIGSSHGWVATLKEDGILRLQDDLNPVASYTEPKRIPLSPLVTLPHCQTQIVTNVSLSSSSPEDEECVVAVKFLGPQLSFCRPAQSNSKWINIRIANPCFYSSRVMFSKKDEMFRILGSGGHIIGSWDLHTHNQKPFQRLRFKNLPKLTKTKQELMDSCYKSEHLVESRTTGETFLVKWYRKAVWRGMSKLKTKALMVFKLDDKGNAVYTQDIGDLCIFLSKSEPFCVPVSSFPGMMFPNHVNLADVGEKGYVNLADSSISARNTRIGPGYHIPPQIID", "length": 361, "header": "tr|Q9FLN7-1|Q9FLN7_ARATH 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"locus": {} } ], "crossref": [ { "id": "Q9FLP7", "url": "https://alphafold.ebi.ac.uk/entry/Q9FLP7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G55150", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G55150", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835608", "url": "https://www.ncbi.nlm.nih.gov/gene/835608", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", 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Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLT6", "url": "https://www.uniprot.org/uniprotkb/Q9FLT6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLT6", "url": "https://www.uniprot.org/uniprotkb/Q9FLT6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G61720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G61720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"MLSLRLSRLVKPATVRSSLLLSLTSSGFSTTSSVQTPPFSILHARPCGADLGKLIILTATGDLTTLDKTVPLELMKEMVMIGASHGWIATLKEDGIMRLQDDLNPVASDSDPKHIPLPPLVTLPHCQTQVVTNVAMSSSSPEHEDCVVAVKFLGPQLSLCRPAQRNSEWTNIRIENQCFYSSPVMFSQKDGMFRIPGSGGNLIGSWDLHKHKKKPKIQRLRFKNLPELTKTKRELLHSCCTSQHLVESTTTDETFLVRWYRKATSSGVVKMKTKAAMVFKLDEEGNAVYTEDIGHLCIFLSKSEPFCVPANSIPGMCPNIVDLFDFDESATFGLDESSLFSSSHTYPAPYHIPPQTILD", "length": 359, "header": "tr|Q9FLW8-1|Q9FLW8_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATDOB4 PE=1 SV=1 CANONICAL=Q9FLW8-1" }, "isoforms": [ { "isoform_ac": "Q9FLW8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLW8/entry#Q9FLW8-1", "sequence": { "sequence": 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"MMNKESFGACLLLTLPEDVFAVISRFLSPSDICNLILCGKSLPALVDTEKMWLVQCEEVKVLPLLEIVQWRIGISSYKALCRFLVEVVKPLLGIWVQQNPELGNVVYVMPGFLSVVGCRIIPQKVAPSWIQEDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKSCNVLQLDVVPRQEKSSCNEIERGASREEGEIPFWMLAFSDRKNLLNIVTSHVSLHVVEPLNEMLFPTLKYDEAMLVERRTILLKMHKFGGNWKNMNLEEDDQLCYNPMQVKINEMLENLGDDYFFDEEELIEVTPTENTNVLGESSSSKNTTPSQSEIRVSNRQSFLSSGDTFGLGLTASYSEMSYYKGWPYMHFHHFLLYKLPVKKAVDQEAYAGLWGGTIGCPAGKCPKGKTEKSLYLLMLTYEESEEHSERVLIGTKILEGKRYVRHPNGTAMFVVKIDTPSLDPFPVDANETHFENSYSGEGIAEGYSFRYTGSKPGSLFVITNDLLAFVWKETKVVITLQRLNLTEILKKGLGSCVPPLPPSKNFTYMRRSFINEFTKLSTDSSYSE", "length": 568, "header": "sp|Q9FLY8-1|FB274_ARATH Isoform 1 of Putative F-box protein At5g39480 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FLY8-1" }, "isoforms": [ { "isoform_ac": "Q9FLY8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLY8/entry#Q9FLY8-1", "sequence": { "sequence": "MMNKESFGACLLLTLPEDVFAVISRFLSPSDICNLILCGKSLPALVDTEKMWLVQCEEVKVLPLLEIVQWRIGISSYKALCRFLVEVVKPLLGIWVQQNPELGNVVYVMPGFLSVVGCRIIPQKVAPSWIQEDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKSCNVLQLDVVPRQEKSSCNEIERGASREEGEIPFWMLAFSDRKNLLNIVTSHVSLHVVEPLNEMLFPTLKYDEAMLVERRTILLKMHKFGGNWKNMNLEEDDQLCYNPMQVKINEMLENLGDDYFFDEEELIEVTPTENTNVLGESSSSKNTTPSQSEIRVSNRQSFLSSGDTFGLGLTASYSEMSYYKGWPYMHFHHFLLYKLPVKKAVDQEAYAGLWGGTIGCPAGKCPKGKTEKSLYLLMLTYEESEEHSERVLIGTKILEGKRYVRHPNGTAMFVVKIDTPSLDPFPVDANETHFENSYSGEGIAEGYSFRYTGSKPGSLFVITNDLLAFVWKETKVVITLQRLNLTEILKKGLGSCVPPLPPSKNFTYMRRSFINEFTKLSTDSSYSE", "length": 568, "header": "sp|Q9FLY8-1|FB274_ARATH Isoform 1 of Putative F-box protein At5g39480 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FLY8-1" }, "locus": { "chromosome": "5", "start_pos": 15801635, "end_pos": 15803341, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G39480.1", "url": "https://www.ensemblgenomes.org/id/AT5G39480.1" }, { "database": "Ensembl Peptide", "id": "AT5G39480.1", "url": "https://www.ensemblgenomes.org/id/AT5G39480.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLY8", "url": "https://www.uniprot.org/uniprotkb/Q9FLY8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FLY8", "url": "https://www.uniprot.org/uniprotkb/Q9FLY8" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G39480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q9FLY8", "url": "https://www.uniprot.org/uniprotkb/Q9FLY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 524, "end_pos": 526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FLY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 568, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FLY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FLY8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FLY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLY8" }, { "id": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FLZ0-1", "uniprot_ac": "Q9FLZ0", "uniprot_id": "Q9FLZ0_ARATH", "mass": { "chemical_mass": 62909.0, "monoisotopic_mass": 62909.0 }, "refseq": { "ac": "NP_001119336", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001119336" }, "gene_names": [], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_001119336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001119336" }, { "id": "Q9FLZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FLZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0", "locus": {} } ], "crossref": [ { "id": "6241265", "url": "https://www.ncbi.nlm.nih.gov/gene/6241265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G39471", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39471", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRACIFL", "url": "https://omabrowser.org/oma/group/HRACIFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001119336", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001119336", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G39471", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G39471", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FLZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FLZ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVGRCPTCQSPLKYTKLSSKCDACYEDYHDNKQGYKCDYCSFCLHEECINANLPSRHKHPLKVTNSYNSKLCYLCETKRYPQILYHCSQCSFSICIPCARKPIIFDQTKAHDHELVQVMIKIPFTCDACGLCSTEYPCLCLQCCFMIHRACIFLPRVIYINRHDHRISHVSSLSTGKWICRVCYEHVNEDYGAYACSICSYFFHSKCATNTNIWDGRELEGVPEEDEKEEIKPFEVIDQTLIKHFSHEHNLKASISSSRLEEPRERCCACTLPFYSEMCYKCTQCDFILHDSCANLPLKKRHEISTHKLMLCTKSQLGANFENSFFCVTCQRYCTGFSYNITGDENNTQHSIDVRCASISDAFKHESHPHWLFVFFDLFYSRCEGCDLNCWFYLRCKDKDDCGGYNLCFTCATLPTLVRDKYDDHPLSLCYGEKNVNARYCCGICEEDVHSKSWFYKCNECGSTLHTKCVFQNLIHSRSGYSLVIGNKGSFDLLPNNRLSRPICYLCKIRCMGDFVLHKKADTSIFICCSCGFNYKDLVRRY", "length": 543, "header": "tr|Q9FLZ0-1|Q9FLZ0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FLZ0-1" }, "isoforms": [ { "isoform_ac": "Q9FLZ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0/entry#Q9FLZ0-1", "sequence": { "sequence": "MDVGRCPTCQSPLKYTKLSSKCDACYEDYHDNKQGYKCDYCSFCLHEECINANLPSRHKHPLKVTNSYNSKLCYLCETKRYPQILYHCSQCSFSICIPCARKPIIFDQTKAHDHELVQVMIKIPFTCDACGLCSTEYPCLCLQCCFMIHRACIFLPRVIYINRHDHRISHVSSLSTGKWICRVCYEHVNEDYGAYACSICSYFFHSKCATNTNIWDGRELEGVPEEDEKEEIKPFEVIDQTLIKHFSHEHNLKASISSSRLEEPRERCCACTLPFYSEMCYKCTQCDFILHDSCANLPLKKRHEISTHKLMLCTKSQLGANFENSFFCVTCQRYCTGFSYNITGDENNTQHSIDVRCASISDAFKHESHPHWLFVFFDLFYSRCEGCDLNCWFYLRCKDKDDCGGYNLCFTCATLPTLVRDKYDDHPLSLCYGEKNVNARYCCGICEEDVHSKSWFYKCNECGSTLHTKCVFQNLIHSRSGYSLVIGNKGSFDLLPNNRLSRPICYLCKIRCMGDFVLHKKADTSIFICCSCGFNYKDLVRRY", "length": 543, "header": "tr|Q9FLZ0-1|Q9FLZ0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FLZ0-1" }, "locus": { "chromosome": "5", "start_pos": 15793789, "end_pos": 15795743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G39471.1", "url": "https://www.ensemblgenomes.org/id/AT5G39471.1" }, { "database": "Ensembl Peptide", "id": "AT5G39471.1", "url": "https://www.ensemblgenomes.org/id/AT5G39471.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete 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194, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser194" }, { "start_pos": 243, "end_pos": 243, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr243" }, { "start_pos": 265, "end_pos": 265, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser265" }, { "start_pos": 388, "end_pos": 388, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser388" }, { "start_pos": 81, "end_pos": 81, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser81" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FLZ6", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FLZ6", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9FLZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FLZ6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "pathway": [ { "id": "ath:AT5G39380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G39380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "Q9FLZ6", "url": 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"Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FM08", "locus": {} } ], "crossref": [ { "id": "10723117", "url": "https://www.ncbi.nlm.nih.gov/gene/10723117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G62865", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G62865", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PPWWKRA", "url": "https://omabrowser.org/oma/group/PPWWKRA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FM08", "url": "https://www.orthodb.org/?gene=Q9FM08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47076", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47076", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47076:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47076:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190601", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G62865", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G62865", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FM08", "url": "https://www.uniprot.org/uniprotkb/Q9FM08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM08-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELSQSDPTRDPDTRYDQRCCCFPSFRRSRSSTAVGYSSWGRIRTVDDSNHSGDHGDEPRWWIRASLKIREWSEIVAGPRWKTFIRRFNRDPRRGRDWDASEKFQYDPLSYSLNFDDDDEEDEYVGLGGLRSFSTRFASVPVYSGKAPAISPTSLSALTPRNEIIES", "length": 167, "header": "tr|Q9FM08-1|Q9FM08_ARATH Isoform 1 of NHL domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FM08-1" }, "isoforms": [ { "isoform_ac": "Q9FM08-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM08/entry#Q9FM08-1", "sequence": { "sequence": "MELSQSDPTRDPDTRYDQRCCCFPSFRRSRSSTAVGYSSWGRIRTVDDSNHSGDHGDEPRWWIRASLKIREWSEIVAGPRWKTFIRRFNRDPRRGRDWDASEKFQYDPLSYSLNFDDDDEEDEYVGLGGLRSFSTRFASVPVYSGKAPAISPTSLSALTPRNEIIES", "length": 167, "header": "tr|Q9FM08-1|Q9FM08_ARATH Isoform 1 of NHL domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FM08-1" }, "locus": { "chromosome": "5", "start_pos": 25233881, "end_pos": 25234884, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G62865.1", "url": "https://www.ensemblgenomes.org/id/AT5G62865.1" }, { "database": "Ensembl Peptide", "id": "AT5G62865.1", "url": "https://www.ensemblgenomes.org/id/AT5G62865.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FM08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM08" } ], "site_lbl": "Ser151" }, { "start_pos": 31, "end_pos": 31, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FM08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM08" } ], "site_lbl": "Ser31" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", 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"MQTSRLLSFSSNSPSFGSFSSAVDLAAIAARVVEEFRDHDQTQSDSSPHRDDDNDSDFAFDCPSNTCSQPLATADEIFCNGQIRPLNPYGGNAPVESQPTSKITTLPPRRRRPALRKLMSEDRDPASNSSSEAEEDLTGVPPETYCVWKPKQSNSGDDDLQRLSSSPSHSKIKSHSAGFSKRWKLRNLLYVRSSSEGNDKLVFPAPVKKNDETVSDQREEEEPPSKVDGEEEGREREETKRQTYVPYRKDMIGILKNVNGLSRHLRPF", "length": 268, "header": "tr|Q9FM16-1|Q9FM16_ARATH Isoform 1 of Membrane-associated kinase regulator, putative (DUF1645) OS=Arabidopsis thaliana OX=3702 GN=MQB2.9 PE=1 SV=1 CANONICAL=Q9FM16-1" }, "isoforms": [ { "isoform_ac": "Q9FM16-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM16/entry#Q9FM16-1", "sequence": { "sequence": "MQTSRLLSFSSNSPSFGSFSSAVDLAAIAARVVEEFRDHDQTQSDSSPHRDDDNDSDFAFDCPSNTCSQPLATADEIFCNGQIRPLNPYGGNAPVESQPTSKITTLPPRRRRPALRKLMSEDRDPASNSSSEAEEDLTGVPPETYCVWKPKQSNSGDDDLQRLSSSPSHSKIKSHSAGFSKRWKLRNLLYVRSSSEGNDKLVFPAPVKKNDETVSDQREEEEPPSKVDGEEEGREREETKRQTYVPYRKDMIGILKNVNGLSRHLRPF", "length": 268, "header": "tr|Q9FM16-1|Q9FM16_ARATH Isoform 1 of Membrane-associated kinase regulator, putative (DUF1645) 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Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FM60", "url": "https://www.uniprot.org/uniprotkb/Q9FM60" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FM60", "url": "https://www.uniprot.org/uniprotkb/Q9FM60" } ], "reference": [ { "type": "PubMed", 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], "crossref": [ { "id": "AT5G55780", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G55780", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835672", "url": "https://www.ncbi.nlm.nih.gov/gene/835672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G55780", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G55780", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETECTEW", "url": "https://omabrowser.org/oma/group/ETECTEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein 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Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FM63", "url": "https://www.uniprot.org/uniprotkb/Q9FM63" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FM63", "url": "https://www.uniprot.org/uniprotkb/Q9FM63" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G55750", "name": "", "url": 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Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FM74", "url": "https://www.uniprot.org/uniprotkb/Q9FM74" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FM74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM74" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FM74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM74" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FM74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM74" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. 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] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835744", "url": "https://www.ncbi.nlm.nih.gov/gene/835744", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G56430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIPECLT", "url": "https://omabrowser.org/oma/group/CIPECLT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FM88", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FM88", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G56430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FM88", "url": "https://www.uniprot.org/uniprotkb/Q9FM88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM88-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNISDLPNDLLVKILSLIPIKVAASTSLLSKRWGSVWKLIPTLDYDGTYSAAALEFFGKFHTLVALRFMKLTIEDVHSTTCFRSVKNLSLLDVKFSSDKTVERLLSCFPILETLVVHRWGADNVKTFAICVPSLQSLNIRYTVGGYHNPKTDHGFVINAPSLKHLDIVDHFSGFCSLVNMPEQLDAEIHLRHIDSEKLLESLTSSKKLSLCLKPQTGSYPGGDFDQLVCLELCVMCSLDWLNLILRRSPKLRSLKLYQSRERNWSCRNSKHVRTKWEQPNSVPECLLVSLETVKWILYKGTQEEKDVVKYLLKNGNFIKTMSIRFSSVVTLEERIHIPMEFEFMGRINSSRCQLSFSKL", "length": 360, "header": "sp|Q9FM88-1|FBD25_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FM88-1" }, "isoforms": [ { "isoform_ac": "Q9FM88-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM88/entry#Q9FM88-1", "sequence": { "sequence": "MRNISDLPNDLLVKILSLIPIKVAASTSLLSKRWGSVWKLIPTLDYDGTYSAAALEFFGKFHTLVALRFMKLTIEDVHSTTCFRSVKNLSLLDVKFSSDKTVERLLSCFPILETLVVHRWGADNVKTFAICVPSLQSLNIRYTVGGYHNPKTDHGFVINAPSLKHLDIVDHFSGFCSLVNMPEQLDAEIHLRHIDSEKLLESLTSSKKLSLCLKPQTGSYPGGDFDQLVCLELCVMCSLDWLNLILRRSPKLRSLKLYQSRERNWSCRNSKHVRTKWEQPNSVPECLLVSLETVKWILYKGTQEEKDVVKYLLKNGNFIKTMSIRFSSVVTLEERIHIPMEFEFMGRINSSRCQLSFSKL", "length": 360, "header": "sp|Q9FM88-1|FBD25_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FM88-1" }, "locus": { "chromosome": "5", "start_pos": 22853323, "end_pos": 22854801, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56430.1", "url": "https://www.ensemblgenomes.org/id/AT5G56430.1" }, { "database": "Ensembl Peptide", "id": "AT5G56430.1", "url": "https://www.ensemblgenomes.org/id/AT5G56430.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FM88", "url": "https://www.uniprot.org/uniprotkb/Q9FM88" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FM88", "url": "https://www.uniprot.org/uniprotkb/Q9FM88" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G56430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FM88-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 360, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FM88-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FM88" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FM88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM88" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 53, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FM89-1", "uniprot_ac": "Q9FM89", "uniprot_id": "FDL38_ARATH", "mass": { "chemical_mass": 48148.0, "monoisotopic_mass": 48148.0 }, "refseq": {}, "gene_names": [ { "name": "MCD7.18", "type": "synonym", "evidence": [ { "id": "Q9FM89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM89" } ] } ], "protein_names": [ { "name": "F-box/FBD/LRR-repeat protein At5g56420", "type": "recommended", "evidence": [ { "id": "Q9FM89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM89/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FM89", "url": "https://www.uniprot.org/uniprotkb/Q9FM89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FM89", "locus": {} } ], "crossref": [ { "id": "Q9FM89", "url": "https://alphafold.ebi.ac.uk/entry/Q9FM89", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G56420", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G56420", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835743", "url": 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"id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G56420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCSGEEP", "url": "https://omabrowser.org/oma/group/YCSGEEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ALDRNIC", "url": "https://omabrowser.org/oma/group/ALDRNIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FM91", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FM91", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_200451", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200451", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G56400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G56400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FM91", "url": "https://www.uniprot.org/uniprotkb/Q9FM91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FM91-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLIRFLLVFQGKIQMNESRKKLNCQSRQFNVDKISDLPEDLLVHILSLLPTTNDIVATSGVSKRWESLWTKVHKLRFNDRIYDGKRYDSFLHFVEKSLILHKAPTLVSLRLSVGPKCTADDIGLWIKLALDRNICELIIKHYPDHGHIRLSRRLCDSKTLVSLKLKNAILGAIWLPTCFISLKTLHLRYVKYSGDESVRTLISSCPSLRNLVVKRHNEDNVKRFAIIVRYLQSLTVYLSPLHGVADSDAYVINTPNLKYLNIKDHYTDLCSFEDMPYLDEANLDVAFTHTENFFESLTSVKKLSLCLKKSNAQYPEGIIFSQLDHLELCTCDDSKWLNILAMLLPDSPKLRVLKLNDKNHDFVDKYCSCTWNQQPSYVPECLTKSLEIFEWRNYKATFRERDVAVYILKNSTCLKKTVISPKLKISGEICDHHIIREDLASLFMGSSSCELKFD", "length": 455, "header": "sp|Q9FM91-1|FBD23_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56400 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FM91-1" }, "isoforms": [ { "isoform_ac": "Q9FM91-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM91/entry#Q9FM91-1", "sequence": { "sequence": "MNLIRFLLVFQGKIQMNESRKKLNCQSRQFNVDKISDLPEDLLVHILSLLPTTNDIVATSGVSKRWESLWTKVHKLRFNDRIYDGKRYDSFLHFVEKSLILHKAPTLVSLRLSVGPKCTADDIGLWIKLALDRNICELIIKHYPDHGHIRLSRRLCDSKTLVSLKLKNAILGAIWLPTCFISLKTLHLRYVKYSGDESVRTLISSCPSLRNLVVKRHNEDNVKRFAIIVRYLQSLTVYLSPLHGVADSDAYVINTPNLKYLNIKDHYTDLCSFEDMPYLDEANLDVAFTHTENFFESLTSVKKLSLCLKKSNAQYPEGIIFSQLDHLELCTCDDSKWLNILAMLLPDSPKLRVLKLNDKNHDFVDKYCSCTWNQQPSYVPECLTKSLEIFEWRNYKATFRERDVAVYILKNSTCLKKTVISPKLKISGEICDHHIIREDLASLFMGSSSCELKFD", "length": 455, "header": "sp|Q9FM91-1|FBD23_ARATH Isoform 1 of Putative FBD-associated F-box protein At5g56400 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FM91-1" }, "locus": { "chromosome": "5", "start_pos": 22846069, "end_pos": 22847615, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G56400.1", "url": "https://www.ensemblgenomes.org/id/AT5G56400.1" }, { "database": "Ensembl Peptide", "id": "AT5G56400.1", "url": "https://www.ensemblgenomes.org/id/AT5G56400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 160, "end_pos": 160, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FM91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM91" } ], "site_lbl": "Thr160" }, { "start_pos": 163, "end_pos": 163, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FM91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FM91" } ], "site_lbl": "Ser163" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FM91", "url": "https://www.uniprot.org/uniprotkb/Q9FM91" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FM91", "url": "https://www.uniprot.org/uniprotkb/Q9FM91" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G56400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FM91", "url": "https://www.uniprot.org/uniprotkb/Q9FM91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FM91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FM91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FM91" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FM91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM91" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 32, "end_pos": 81, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 160, 163 ], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 411, "end_pos": 413 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"Organism-specific" ] }, { "id": "835740", "url": "https://www.ncbi.nlm.nih.gov/gene/835740", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", 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"https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G56380", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLRIDEC", "url": "https://omabrowser.org/oma/group/FLRIDEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FM93", "url": 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"MDRISHLADEILSKILSFLGTKDVMQTMLLSKRFKSQWLLVPKLEFDDSTHLPETWGYQEPDYGNFRRFVDRSLLSREGRVLQTLFLKLGRQCSYDDIAIWVGIAVKRGLMELKLKYTDSYYPKRSSLPRSLYTCETLVVLKLKKGYLDVPDLVCLRSLKTLSLRDMNYSNASCLLRLLASCPVLEELFIQQGYYDSCALSFKIILPCLKKLSYLPKRKKKYSGIDRSEVSGGISGLVLDAPSLKYLHIVDRSGLFSVSEIININAVVKATLEVNASRPEKLLYSLVSVEHIRLCLSATEVVYPVGLGSSFHKLKRLEVCTCKSEWLDLFIHLLEDSPSLQDIKINQCHPVTNPRPQWNQPGSVPRCLSSSLETLEWVEYGGTHEEKELSTYLFKTAVCFKKASFTAKWSGGDANKKLQMLQELALSPRVSPTCELVFN", "length": 439, "header": "sp|Q9FM93-1|FBD38_ARATH Isoform 1 of FBD-associated F-box protein At5g56380 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FM93-1" }, "isoforms": [ { "isoform_ac": "Q9FM93-1", "url": "https://www.uniprot.org/uniprotkb/Q9FM93/entry#Q9FM93-1", "sequence": { "sequence": 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Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FM93", "url": "https://www.uniprot.org/uniprotkb/Q9FM93" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G56380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G56380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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CANONICAL=Q9FMC1-1" }, "locus": { "chromosome": "5", "start_pos": 15540606, "end_pos": 15541540, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G38810.2", "url": "https://www.ensemblgenomes.org/id/AT5G38810.2" }, { "database": "Ensembl Peptide", "id": "AT5G38810.2", "url": "https://www.ensemblgenomes.org/id/AT5G38810.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMC1", "url": "https://www.uniprot.org/uniprotkb/Q9FMC1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana 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IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Sato S, Kaneko T, Kotani H, Nakamura Y, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FMC1", "url": "https://www.uniprot.org/uniprotkb/Q9FMC1" } ], "reference": [ { "type": "PubMed", "id": "9628582", "url": "https://glygen.org/publication/PubMed/9628582" } ] } ], "pathway": [ { "id": "ath:AT5G38810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G38810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMC1", "url": "https://www.uniprot.org/uniprotkb/Q9FMC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], 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"KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWANIAP", "url": "https://omabrowser.org/oma/group/EWANIAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33181", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33181", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33181:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33181:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199129", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199129", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G43150", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G43150", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMG8", "url": "https://www.uniprot.org/uniprotkb/Q9FMG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMG8-1", "url": 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"Ensembl Peptide", "id": "AT5G43040.1", "url": "https://www.ensemblgenomes.org/id/AT5G43040.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMI0", "url": "https://www.uniprot.org/uniprotkb/Q9FMI0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMI0", "url": "https://www.uniprot.org/uniprotkb/Q9FMI0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G43040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMI0", "url": "https://www.uniprot.org/uniprotkb/Q9FMI0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9FMI0", "url": "https://www.uniprot.org/uniprotkb/Q9FMI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMI0" }, { "id": "SM00249", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger PHD-type", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 88, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 190, "end_pos": 192 }, { "start_pos": 307, "end_pos": 309 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", 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"https://www.uniprot.org/uniprotkb/Q9FMI1" } ] }, { "name": "MMG4.3", "type": "synonym", "evidence": [ { "id": "NP_199117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199117" } ] }, { "name": "MMG4_3", "type": "synonym", "evidence": [ { "id": "NP_199117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199117" }, { "id": "Q9FMI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1" } ] } ], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_199117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199117" }, { "id": "Q9FMI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMI1", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MMG4.3", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1", "locus": {} } ], "crossref": [ { "id": "AT5G43030", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G43030", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834318", "url": "https://www.ncbi.nlm.nih.gov/gene/834318", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G43030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G43030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HICHEIN", "url": "https://omabrowser.org/oma/group/HICHEIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_199117", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199117", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G43030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G43030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMI1", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMI1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEEIADGGILSPFHNHPLYPTDDSSTPCVGCGEETAGKHACHICHEINVHKGCLEIINPSSPAHPLSLTDRFDDYIKCTICHWVFHRYMYYCSFSGLPVCKQCVRKPFILDPEKAHEHPLLIFLKGSFSFPCDACGVNDANSCLCLCIPCRFTIHMDCVYLPRVICVNRHDHRISHVPRLGSGNWSCGVCRKEVNGMYGAYSCLTCTFVVHSRCAIRSNVWDGIELEGVPEEDPANLLPFYVVEEGLIKHFTHEHNLRLVNEDDILHDISKQCYGCVLPIFFNSCYICTLCDFVLHETCANLSKKKRHPSESRRLTLYDEYYVNSLMRKGPFICFVCNQRCSGFAYVEDSERRDGLKIDVRCVSIYDGYVHKSQPHSMLVVPDNWSTCSICGKGGEHMWSLTGQDDLFMCYKCATIPELAMHKYDVHPLSLQFGEMAKGDYWCDICEKILDPQKWFYTCDLCCTTLHIDCVLGMEPYMRVGSTFHLKRFVLEVLSNYSASRPHCYTCSSRINDLIVYKSKDVYFCSLMCIKKSPKLDSGLYWSNMYDFTEPDLHLSNFFHDDS", "length": 564, "header": "tr|Q9FMI1-1|Q9FMI1_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MMG4.3 PE=4 SV=1 CANONICAL=Q9FMI1-1" }, "isoforms": [ { "isoform_ac": "Q9FMI1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMI1/entry#Q9FMI1-1", "sequence": { "sequence": "MEEEIADGGILSPFHNHPLYPTDDSSTPCVGCGEETAGKHACHICHEINVHKGCLEIINPSSPAHPLSLTDRFDDYIKCTICHWVFHRYMYYCSFSGLPVCKQCVRKPFILDPEKAHEHPLLIFLKGSFSFPCDACGVNDANSCLCLCIPCRFTIHMDCVYLPRVICVNRHDHRISHVPRLGSGNWSCGVCRKEVNGMYGAYSCLTCTFVVHSRCAIRSNVWDGIELEGVPEEDPANLLPFYVVEEGLIKHFTHEHNLRLVNEDDILHDISKQCYGCVLPIFFNSCYICTLCDFVLHETCANLSKKKRHPSESRRLTLYDEYYVNSLMRKGPFICFVCNQRCSGFAYVEDSERRDGLKIDVRCVSIYDGYVHKSQPHSMLVVPDNWSTCSICGKGGEHMWSLTGQDDLFMCYKCATIPELAMHKYDVHPLSLQFGEMAKGDYWCDICEKILDPQKWFYTCDLCCTTLHIDCVLGMEPYMRVGSTFHLKRFVLEVLSNYSASRPHCYTCSSRINDLIVYKSKDVYFCSLMCIKKSPKLDSGLYWSNMYDFTEPDLHLSNFFHDDS", "length": 564, "header": "tr|Q9FMI1-1|Q9FMI1_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MMG4.3 PE=4 SV=1 CANONICAL=Q9FMI1-1" }, "locus": { "chromosome": "5", "start_pos": 17258927, "end_pos": 17260784, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43030.1", "url": "https://www.ensemblgenomes.org/id/AT5G43030.1" }, { "database": "Ensembl Peptide", "id": "AT5G43030.1", "url": "https://www.ensemblgenomes.org/id/AT5G43030.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 518, "end_pos": 518, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMI1" } ], "site_lbl": "Tyr518" }, { "start_pos": 520, "end_pos": 520, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMI1" } ], "site_lbl": "Ser520" }, { "start_pos": 524, "end_pos": 524, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMI1" } ], "site_lbl": "Tyr524" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, 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"mass": { "chemical_mass": 31441.0, "monoisotopic_mass": 31441.0 }, "refseq": { "ac": "NP_199114", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199114" }, "gene_names": [ { "name": "MBD2.20", "type": "recommended", "evidence": [ { "id": "Q9FML9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FML9" } ] }, { "name": "MBD2.20", "type": "synonym", "evidence": [ { "id": "NP_199114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199114" } ] }, { "name": "MBD2_20", "type": "synonym", "evidence": [ { "id": "NP_199114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199114" }, { "id": "Q9FML9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FML9" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9FML9", "database": "UniProtKB", "url": 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVCACDT", "url": "https://omabrowser.org/oma/group/IVCACDT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FML9", "url": "https://www.orthodb.org/?gene=Q9FML9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_199114", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199114", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G43000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G43000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FML9", "url": "https://www.uniprot.org/uniprotkb/Q9FML9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FML9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FML9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAILTPVIKLVVFRQSLRPHSAIAFLVEFLCFVLELLDKEKDLAKIFGIVCACDTLIFTLLDLIQSLIEEEVKIQRCGRVFWLYTNDGSLYWHTLNAYLLMLCIVHVIGSTISYVSHKHYLVLLPLFAAGLELVPQEAYRVLGPDQESGNSIEPLNGPLNGIELEQGMVVHVEPLQEPLDGIELEQELVPQETNRVLGPDQESQNCIGALNDPSDGKDQNLQDDIVLDQESQDCIIAPHQCPLDGIDLQQETVVHVEPLQDPLDGIELEQEVAIHVGPNDDP", "length": 282, "header": "tr|Q9FML9-1|Q9FML9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MBD2.20 PE=4 SV=1 CANONICAL=Q9FML9-1" }, "isoforms": [ { "isoform_ac": "Q9FML9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FML9/entry#Q9FML9-1", "sequence": { "sequence": "MAILTPVIKLVVFRQSLRPHSAIAFLVEFLCFVLELLDKEKDLAKIFGIVCACDTLIFTLLDLIQSLIEEEVKIQRCGRVFWLYTNDGSLYWHTLNAYLLMLCIVHVIGSTISYVSHKHYLVLLPLFAAGLELVPQEAYRVLGPDQESGNSIEPLNGPLNGIELEQGMVVHVEPLQEPLDGIELEQELVPQETNRVLGPDQESQNCIGALNDPSDGKDQNLQDDIVLDQESQDCIIAPHQCPLDGIDLQQETVVHVEPLQDPLDGIELEQEVAIHVGPNDDP", "length": 282, "header": "tr|Q9FML9-1|Q9FML9_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=MBD2.20 PE=4 SV=1 CANONICAL=Q9FML9-1" }, "locus": { "chromosome": "5", "start_pos": 17246354, "end_pos": 17247202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G43000.1", "url": "https://www.ensemblgenomes.org/id/AT5G43000.1" }, { "database": "Ensembl Peptide", "id": "AT5G43000.1", "url": "https://www.ensemblgenomes.org/id/AT5G43000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, 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"O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FMQ0" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 369, "start_aa": "Thr", "end_pos": 369, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr369", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FMQ0", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FMQ0" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, 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"O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 409, "start_aa": "Ser", "end_pos": 409, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser409", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FMQ0", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FMQ0" } ] } ], "phosphorylation": [ { "start_pos": 368, "end_pos": 368, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMQ0" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser368" } ], 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Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMQ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMQ0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMQ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMQ0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Atlas", "id": "Q9FMQ0", "url": "https://oglcnac.org/atlas/detail/Q9FMQ0" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9FMQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMQ0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT5G12120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G12120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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"MMFSVTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDRDNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYDIQELADKLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLSKALELMPKKDQWTFKVAHYVPWLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMENPRPGLEKVRQQGDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYEINRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALLVN", "length": 340, "header": "tr|Q9FMQ5-1|Q9FMQ5_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MWD9.26 PE=1 SV=1 CANONICAL=Q9FMQ5-1" }, "isoforms": [ { "isoform_ac": "Q9FMQ5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMQ5/entry#Q9FMQ5-1", "sequence": { "sequence": 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Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMQ5", "url": "https://www.uniprot.org/uniprotkb/Q9FMQ5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G22355", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22355", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VAYECCT", "url": "https://omabrowser.org/oma/group/VAYECCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF211", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF211", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680208", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680208", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22355", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22355", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMR6", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMR6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLPPKILPTHKYPLTISTRFVNDSCKGCNIKGPIYGGYRCNEPSSTSLFFHKECAEAPPEIINHPSHPQHTLKLHNSLRNPCKCNLCGKTFFAFGYRCSSKCDFIVDLTCGINPLPVSIEHPKSHHHPVIFLKEPAKPGRRRCGICKGYNGGCSYACLECEVHFHVECVNLSQEVNHPSHPQHSLKLLEYESLTSDAEETCLLCGERPDKVLYRCSICNFSVCRFCTKDPPPLAIEHHKTHEHRLVLLSRLISFECNACGMQGDRSPYMCVQCGFVVHRTCIDLPRVININRHDHRISFTHHLGVGYSRCGICRKDISQYHGAYLCPRCPNYAAHSLCATRKDVWDGVELEGTPDDDDEDIVPFKVVGDNLIKHFSHEEHNLRLNKDNINRDEGSRCEACVLPIYSDPIYNCEECRFILHEKCANHPKKKRHVFHTKPFTLWSRPPRTFHSKDFRFYDVFRCYACRTKSTGFRYVSDWWVLDVRCGSRSEPVIHDGHRHPLYYEHKKDHCCDACYKEIDGYLLSCDTCDFDLDLHCTDLPKTVKHSCDNHPLSLCYGENATGKYWCDICEAETDPSKWFYTCSKCVVTAHIECVLGDFSRLMPGRIINYNNVRVEVVLNSYSSRPFCAKCHSRCRAPIILKLCDPYTGYICSDACVVPDYQYS", "length": 664, "header": "tr|Q9FMR6-1|Q9FMR6_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FMR6-1" }, "isoforms": [ { "isoform_ac": "Q9FMR6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6/entry#Q9FMR6-1", "sequence": { "sequence": "MDLPPKILPTHKYPLTISTRFVNDSCKGCNIKGPIYGGYRCNEPSSTSLFFHKECAEAPPEIINHPSHPQHTLKLHNSLRNPCKCNLCGKTFFAFGYRCSSKCDFIVDLTCGINPLPVSIEHPKSHHHPVIFLKEPAKPGRRRCGICKGYNGGCSYACLECEVHFHVECVNLSQEVNHPSHPQHSLKLLEYESLTSDAEETCLLCGERPDKVLYRCSICNFSVCRFCTKDPPPLAIEHHKTHEHRLVLLSRLISFECNACGMQGDRSPYMCVQCGFVVHRTCIDLPRVININRHDHRISFTHHLGVGYSRCGICRKDISQYHGAYLCPRCPNYAAHSLCATRKDVWDGVELEGTPDDDDEDIVPFKVVGDNLIKHFSHEEHNLRLNKDNINRDEGSRCEACVLPIYSDPIYNCEECRFILHEKCANHPKKKRHVFHTKPFTLWSRPPRTFHSKDFRFYDVFRCYACRTKSTGFRYVSDWWVLDVRCGSRSEPVIHDGHRHPLYYEHKKDHCCDACYKEIDGYLLSCDTCDFDLDLHCTDLPKTVKHSCDNHPLSLCYGENATGKYWCDICEAETDPSKWFYTCSKCVVTAHIECVLGDFSRLMPGRIINYNNVRVEVVLNSYSSRPFCAKCHSRCRAPIILKLCDPYTGYICSDACVVPDYQYS", "length": 664, "header": "tr|Q9FMR6-1|Q9FMR6_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FMR6-1" }, "locus": { "chromosome": "5", "start_pos": 7401707, "end_pos": 7403972, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22355.1", "url": "https://www.ensemblgenomes.org/id/AT5G22355.1" }, { "database": "Ensembl Peptide", "id": "AT5G22355.1", "url": "https://www.ensemblgenomes.org/id/AT5G22355.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMR6", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMR6", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G22355", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22355", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMR6", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9FMR6", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 560, "end_pos": 562, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMR6" }, { "id": "SM00249", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger PHD-type", "eco_id": "ECO_0000259", "start_pos": 143, "end_pos": 220, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 171, "end_pos": 173 }, { "start_pos": 220, "end_pos": 222 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 560, "end_pos": 562 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/Q9FMT5", "locus": {} } ], "crossref": [ { "id": "Q9FMT5", "url": "https://alphafold.ebi.ac.uk/entry/Q9FMT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G14160", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G14160", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831266", "url": "https://www.ncbi.nlm.nih.gov/gene/831266", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050942", "url": 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"MALIHKRQALNSRGVDWSELPEDVIRLVLRRLRLSDFHRARAVCSTWCRVWGDCVSKPNQVPWLILFPDPAQIRRSCMLYNPQEEENVYTIQDLGVDPCLASCGTWLLALFSVLYRKGHFASKAEMMGYPSTDKAVVWIDEKTKDYVVACSWGGDKHAAFCKKGDCEWRQIPPLLGCSDIALKDHKLYIYYEDGSIGISDLKFVTKTAHVQLYPFRFRLGSFSPYDTIWTDYLDWKTNIVITISGDFLMVGCVLKRRDLSWLFRGDQAVILDLGITVQASSDIQGITRNSTYFSGLPSSQKDVFVFNLSSQKVQRLSSSSISSRPFSNARWLFPTSYFTMILFPNIFVFVQL", "length": 352, "header": "sp|Q9FMT5-1|FB256_ARATH Isoform 1 of Putative F-box protein At5g14160 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FMT5-1" }, "isoforms": [ { "isoform_ac": "Q9FMT5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMT5/entry#Q9FMT5-1", "sequence": { "sequence": "MALIHKRQALNSRGVDWSELPEDVIRLVLRRLRLSDFHRARAVCSTWCRVWGDCVSKPNQVPWLILFPDPAQIRRSCMLYNPQEEENVYTIQDLGVDPCLASCGTWLLALFSVLYRKGHFASKAEMMGYPSTDKAVVWIDEKTKDYVVACSWGGDKHAAFCKKGDCEWRQIPPLLGCSDIALKDHKLYIYYEDGSIGISDLKFVTKTAHVQLYPFRFRLGSFSPYDTIWTDYLDWKTNIVITISGDFLMVGCVLKRRDLSWLFRGDQAVILDLGITVQASSDIQGITRNSTYFSGLPSSQKDVFVFNLSSQKVQRLSSSSISSRPFSNARWLFPTSYFTMILFPNIFVFVQL", "length": 352, "header": "sp|Q9FMT5-1|FB256_ARATH Isoform 1 of Putative F-box protein At5g14160 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FMT5-1" }, "locus": { "chromosome": "5", "start_pos": 4567333, "end_pos": 4568467, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14160.1", "url": "https://www.ensemblgenomes.org/id/AT5G14160.1" }, { "database": "Ensembl Peptide", "id": "AT5G14160.1", "url": "https://www.ensemblgenomes.org/id/AT5G14160.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of 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"MGNSNSSSVDHRFISASRAFTQKKLDDLKSLFVSLASNSQSNDQYVSYPVFQEYFGLSGSLGERMFDMVTQRRKDDKMTYEDLVIAKATYEKGTDDEIAEFIYQTLDVNGNGVLSRSDLESFLVVILKSVFSTESSDAESSDYKKMVDALLNAATFSKSDDGSEKGMSFEDFRSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERYSDFYGDMKSFLFQLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQDTKHNAMKGTVLERFKEDRNMLKLVGMAGNSND", "length": 424, "header": "tr|Q9FNI2-1|Q9FNI2_ARATH Isoform 1 of TLD-domain containing nucleolar protein OS=Arabidopsis thaliana OX=3702 GN=OXR3 PE=1 SV=1 CANONICAL=Q9FNI2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BAM0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI2/entry#A0A1P8BAM0-1", "sequence": { "sequence": "MISNLSSSPSLPILRAMTNTSRTLFSRSDLESFLVVILKSVFSTESSDAESSDYKKMVDALLNAATFSKSDDGSEKGMSFEDFRSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERYSDFYGDMKSFLFQLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQDTKHNAMKGTVLERFKEDRNMLKLVGMAGNSND", "length": 335, "header": "tr|A0A1P8BAM0-1|Q9FNI2_ARATH Computationally mapped isoform of TLD-domain containing nucleolar protein OS=Arabidopsis thaliana OX=3702 GN=OXR3 PE=1 SV=1 CANONICAL=Q9FNI2-1" }, "locus": { "chromosome": "5", "start_pos": 1902591, "end_pos": 1905101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06260.3", "url": "https://www.ensemblgenomes.org/id/AT5G06260.3" }, { "database": "Ensembl Peptide", "id": "AT5G06260.3", "url": "https://www.ensemblgenomes.org/id/AT5G06260.3" } ] } }, { "isoform_ac": "A0A1P8BAM8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI2/entry#A0A1P8BAM8-1", "sequence": { "sequence": "MFDMVTQRRKDDKMTYEDLVIAKATYEKGTDDEIAEFIYQTLDVNGNGVLSRSDLESFLVVILKSVFSTESSDAESSDYKKMVDALLNAATFSKSDDGSEKGMSFEDFRSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERYSDFYGDMKSFLFQLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQDTKHNAMKGTVLERFKEDRNMLKLVGMAGNSND", "length": 360, "header": "tr|A0A1P8BAM8-1|Q9FNI2_ARATH Computationally mapped isoform of TLD-domain containing nucleolar protein OS=Arabidopsis thaliana OX=3702 GN=OXR3 PE=1 SV=1 CANONICAL=Q9FNI2-1" }, "locus": { "chromosome": "5", "start_pos": 1902565, "end_pos": 1905101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06260.2", "url": "https://www.ensemblgenomes.org/id/AT5G06260.2" }, { "database": "Ensembl Peptide", "id": "AT5G06260.2", "url": "https://www.ensemblgenomes.org/id/AT5G06260.2" } ] } }, { "isoform_ac": "Q9FNI2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI2/entry#Q9FNI2-1", "sequence": { "sequence": "MGNSNSSSVDHRFISASRAFTQKKLDDLKSLFVSLASNSQSNDQYVSYPVFQEYFGLSGSLGERMFDMVTQRRKDDKMTYEDLVIAKATYEKGTDDEIAEFIYQTLDVNGNGVLSRSDLESFLVVILKSVFSTESSDAESSDYKKMVDALLNAATFSKSDDGSEKGMSFEDFRSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERYSDFYGDMKSFLFQLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQDTKHNAMKGTVLERFKEDRNMLKLVGMAGNSND", "length": 424, "header": "tr|Q9FNI2-1|Q9FNI2_ARATH Isoform 1 of TLD-domain containing nucleolar protein OS=Arabidopsis thaliana OX=3702 GN=OXR3 PE=1 SV=1 CANONICAL=Q9FNI2-1" }, "locus": { "chromosome": "5", "start_pos": 1902594, "end_pos": 1905277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G06260.1", "url": "https://www.ensemblgenomes.org/id/AT5G06260.1" }, { "database": "Ensembl Peptide", "id": "AT5G06260.1", "url": "https://www.ensemblgenomes.org/id/AT5G06260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BAM0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAM0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BAM0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BAM0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G06260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G06260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "Q9FNI2", "url": "https://www.uniprot.org/uniprotkb/Q9FNI2" } ], "pmid": "" } ] }, { "name": "Cellular Component", 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], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM30", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3", "locus": { "chromosome": "CP002688.1", "start_pos": 17128934, "end_pos": 17125455, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT5G42710", "url": "https://www.ensemblgenomes.org/id/AT5G42710" } ] } } ], "crossref": [ { "id": "AT5G42710", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G42710", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834280", "url": "https://www.ncbi.nlm.nih.gov/gene/834280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G42710", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DSEYMIR", "url": "https://omabrowser.org/oma/group/DSEYMIR/", "database": "OMA", 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"https://www.uniprot.org/uniprotkb/F4K323", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K323-1", "url": "https://www.uniprot.org/uniprotkb/F4K323-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMZ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSNGEKRMMKRSDFAQKLLDDLRVRKEQLSGSQNSLQKDKYAYSNRGFKGSRANSTTFQDLTSGCIEASNQLVPYGKGKSMEKLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVFVQQQQPSSSSPMIHVHIKEISKGAQKLNQIINACSNGLSFRKGRYSIQCGEQLMEGAIELEQSLRLLVDIQQASEYTSHKRRKNRIKLLEENGDDDEEEDAHNQNYQKIKQVAKADIEMRLLALNYQEDKNNKHRKQTSYCEDTEQRSTKPQKGRIPSVVAKLMGLGEFPQDEKETNIKHDGENLTRRRVMEASENLVELKTQRKSTSLDLVIHKETQTANEINYKAKSQQKDREKDDSKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVVARSQQKPLHKLSNKKEKLQRERHRENGVTTNHSQKPLSSEDLQMKVRLINKAKAVKKSFSHVEVAQKGKEGEVLKAKICEKKNQDIYISNEALCKVMKRPEIKKEDGKHDLLLKSYNDSNEKKAEVDTCIKSSQVSGVEHKKEIKDDSILLIAAERVPCQAPSENQHHGRMFTNGMDQQAPIPKSDGNSDILSKTVYKETKGEIEAGLPLLEKRQERRKRETTETLSENEINLKKIFVKSQLFLDTAKAHFKLNIPQNVFHDTTSGSYYYQEDKNLTLECAFELMKRKRRFQELSVHPFVKVPISSSKINSLDHLIRQISKELEKLRAYGRDCHIGSHVEDYVLERDVHYKDPYLNSMWDMGWNDSMLAFIEKDDVMRDIEREVFSGLLEEITRDLICI", "length": 807, "header": "tr|Q9FMZ3-1|Q9FMZ3_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM30 PE=1 SV=1 CANONICAL=Q9FMZ3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BCS0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3/entry#A0A1P8BCS0-1", "sequence": { "sequence": "MSSNGEKRMMKRSDFAQKLLDDLRVRKEQLSGSQNSLQKDKYAYSNRGFKGSRANSTTFQDLTSGCIEASNQLVPYGKGKSMEKLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVFVQQQQPSSSSPMIHVHIKEISKGAQKLNQIINACSNGLSFRKGRYSIQCGEQLMEGAIELEQSLRLLVDIQQASEYTSHKRRKNRIKLLEENGDDDEEEDAHNQNYQKIKQVAKADIEMRLLALNYQEDKNNKHRKQTSYCEDTEQRSTKPQKGRIPSVVAKLMGLGEFPQDEKETNIKHDGENLTRRRVMEASENLVELKTQRKSTSLDLVIHKETQTANEINYKAKSQQKDREKDDSKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVVARSQQKPLHKLSNKKEKLQRERHRENGVTTNHSQKPLSSEDLQMKVRLINKAKAVKKSFSHVEVAQKGKEGEVLKAKICEKKNQDIYISNEALCKVMKRPEIKKEDGKHDLLLKSYNDSNEKKAEVDTCIKSSQVSGVEHKKEIKDDSILLIAAERVPCQAPSENHHGRMFTNGMDQQAPIPKSDGNSDILSKTVYKETKGEIEAGLPLLEKRQERRKRETTETLSENEINLKKIFVKSQLFLDTAKAHFKLNIPQNVFHDTTSGSYYYQEDKNLTLECAFELMKRKRRFQELSVHPFVKVPISSSKINSLDHLIRQISKELEKLRAYGRDCHIGSHVEDYVLERDVHYKDPYLNSMWDMGWNDSMLAFIEKDDVMRDIEREVFSGLLEEITRDLICI", "length": 806, "header": "tr|A0A1P8BCS0-1|Q9FMZ3_ARATH Computationally mapped isoform of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM30 PE=1 SV=1 CANONICAL=Q9FMZ3-1" }, "locus": { "chromosome": "5", "start_pos": 17125455, "end_pos": 17128934, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42710.3", "url": "https://www.ensemblgenomes.org/id/AT5G42710.3" }, { "database": "Ensembl Peptide", "id": "AT5G42710.3", "url": "https://www.ensemblgenomes.org/id/AT5G42710.3" } ] } }, { "isoform_ac": "F4K323-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3/entry#F4K323-1", "sequence": { "sequence": "MSSNGEKRMMKRSDFAQKLLDDLRVRKEQLSGSQNSLQKDKYAYSNRGFKGSRANSTTFQDLTSGCIEASNQLVPYGKGKSMEKLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVFVQQQQPSSSSPMIHVHIKEISKGAQKLNQIINACSNGLSFRKGRYSIQCGEQLMEGAIELEQSLRLLVDIQQASEYTSHKRRKNRIKLLEENGDDDEEEDAHNQNYQKIKQVAKADIEMRLLALNYQEDKNNKHRKQTSYCEDTEQRSTKPQKGRIPSVVAKLMGLGEFPQDEKETNIKHDGENLTRRRVMEASENLVELKTQRKSTSLDLVIHKETQTANEINYKAKSQQKDREKDDSKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVVARSQQKPLHKLSNKKEKLQRERHRENGVTTNHSQKPLSSEDLQMKVRLINKAKAVKKSFSHVEVAQKGKEGEVLKAKICEKKNQDIYISNEALCKVMKRPEIKKEDGKHDLLLKSYNDSNEKKAEVDTCIKSSQVSGVEHKKEIKDDSILLIAAERVPCQAPSENHHGRMFTNGMDQQAPIPKSDGNSDILSKTVYKGEIEAGLPLLEKRQERRKRETTETLSENEINLKKIFVKSQLFLDTAKAHFKLNIPQNVFHDTTSGSYYYQEDKNLTLECAFELMKRKRRFQELSVHPFVKVPISSSKINSLDHLIRQISKELEKLRAYGRDCHIGSHVEDYVLERDVHYKDPYLNSMWDMGWNDSMLAFIEKDDVMRDIEREVFSGLLEEITRDLICI", "length": 803, "header": "tr|F4K323-1|Q9FMZ3_ARATH Computationally mapped isoform of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM30 PE=1 SV=1 CANONICAL=Q9FMZ3-1" }, "locus": { "chromosome": "5", "start_pos": 17125481, "end_pos": 17128847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42710.2", "url": "https://www.ensemblgenomes.org/id/AT5G42710.2" }, { "database": "Ensembl Peptide", "id": "AT5G42710.2", "url": "https://www.ensemblgenomes.org/id/AT5G42710.2" } ] } }, { "isoform_ac": "Q9FMZ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3/entry#Q9FMZ3-1", "sequence": { "sequence": "MSSNGEKRMMKRSDFAQKLLDDLRVRKEQLSGSQNSLQKDKYAYSNRGFKGSRANSTTFQDLTSGCIEASNQLVPYGKGKSMEKLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVFVQQQQPSSSSPMIHVHIKEISKGAQKLNQIINACSNGLSFRKGRYSIQCGEQLMEGAIELEQSLRLLVDIQQASEYTSHKRRKNRIKLLEENGDDDEEEDAHNQNYQKIKQVAKADIEMRLLALNYQEDKNNKHRKQTSYCEDTEQRSTKPQKGRIPSVVAKLMGLGEFPQDEKETNIKHDGENLTRRRVMEASENLVELKTQRKSTSLDLVIHKETQTANEINYKAKSQQKDREKDDSKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVVARSQQKPLHKLSNKKEKLQRERHRENGVTTNHSQKPLSSEDLQMKVRLINKAKAVKKSFSHVEVAQKGKEGEVLKAKICEKKNQDIYISNEALCKVMKRPEIKKEDGKHDLLLKSYNDSNEKKAEVDTCIKSSQVSGVEHKKEIKDDSILLIAAERVPCQAPSENQHHGRMFTNGMDQQAPIPKSDGNSDILSKTVYKETKGEIEAGLPLLEKRQERRKRETTETLSENEINLKKIFVKSQLFLDTAKAHFKLNIPQNVFHDTTSGSYYYQEDKNLTLECAFELMKRKRRFQELSVHPFVKVPISSSKINSLDHLIRQISKELEKLRAYGRDCHIGSHVEDYVLERDVHYKDPYLNSMWDMGWNDSMLAFIEKDDVMRDIEREVFSGLLEEITRDLICI", "length": 807, "header": "tr|Q9FMZ3-1|Q9FMZ3_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM30 PE=1 SV=1 CANONICAL=Q9FMZ3-1" }, "locus": { "chromosome": "5", "start_pos": 17125578, "end_pos": 17128847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G42710.1", "url": "https://www.ensemblgenomes.org/id/AT5G42710.1" }, { "database": "Ensembl Peptide", "id": "AT5G42710.1", "url": "https://www.ensemblgenomes.org/id/AT5G42710.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 728, "end_pos": 728, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMZ3" } ], "site_lbl": "Ser728" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCS0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCS0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCS0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCS0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G42710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G42710", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ3", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 683, "end_pos": 685, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 728 ], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 525, "end_pos": 527 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 683, "end_pos": 685 }, { "start_pos": 772, "end_pos": 774 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FNI8-1", "uniprot_ac": "Q9FNI8", "uniprot_id": "FBD32_ARATH", "mass": { "chemical_mass": 53650.0, "monoisotopic_mass": 53650.0 }, "refseq": { "ac": "NP_197665", "name": "F-box/RNI-like/FBD-like domains-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197665" }, "gene_names": [ { "name": "MDJ22.15", "type": "recommended", "evidence": [ { "id": "Q9FNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" } ] }, { "name": "MDJ22.15", "type": "synonym", "evidence": [ { "id": "NP_197665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197665" }, { "id": "Q9FNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" } ] }, { "name": "MDJ22_15", "type": "synonym", "evidence": [ { "id": "NP_197665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197665" }, { "id": "Q9FNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" } ] } ], "protein_names": [ { "name": "FBD-associated F-box protein At5g22730", "type": "recommended", "evidence": [ { "id": "Q9FNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8/entry#names_and_taxonomy" } ] }, { "name": "F-box/RNI-like/FBD-like domains-containing protein", "type": "synonym", "evidence": [ { "id": "NP_197665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197665" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNI8", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8", "locus": {} } ], "crossref": [ { "id": "Q9FNI8", "url": "https://alphafold.ebi.ac.uk/entry/Q9FNI8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G22730", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G22730", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "832336", "url": "https://www.ncbi.nlm.nih.gov/gene/832336", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G22730", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22730", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HLDIECT", "url": "https://omabrowser.org/oma/group/HLDIECT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FNI8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FNI8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_197665", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197665", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G22730", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22730", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BCX4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BCX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNI8", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNI8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLYEGYLKYMKAKYGERSQGTYFMAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVGFMNKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGKFEAVSLPCLKTMRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLKYLKFQDDLSGSKIITNSGSLAKVNVVYVFNENDCADVVDIPRRNMVRNFLTSISGVSDMKISQHFVEFLYYYKDFDPLPQFCNLSRLKAEISLYFLEILPTILESCPNLKSLVMVLEFYLQEEDEPIIFSSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLRCSTHEDGFYILKDLLALPRGSSTCRIVVC", "length": 466, "header": "sp|Q9FNI8-1|FBD32_ARATH Isoform 1 of FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FNI8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BCX4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8/entry#A0A1P8BCX4-1", "sequence": { "sequence": "MLYEGYLKYMKAKYGERSQGTYFMAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVGFMNKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGKFEAVSLPCLKTMRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLKYLKFQDDLSGSKIITNSGSLAKVNVVYVFNENDCADVVDIPRRNMVRNFLTSISGVSDMKISQHFVEFLYYYKDFDPLPQFCNLSRLKAEISLYFLEILPTILESCPNLKSLVMVLVMTRTTLELLLKIL", "length": 391, "header": "tr|A0A1P8BCX4-1|FBD32_ARATH Computationally mapped isoform of FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNI8-1" }, "locus": { "chromosome": "5", "start_pos": 7551365, "end_pos": 7553504, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22730.2", "url": "https://www.ensemblgenomes.org/id/AT5G22730.2" }, { "database": "Ensembl Peptide", "id": "AT5G22730.2", "url": "https://www.ensemblgenomes.org/id/AT5G22730.2" } ] } }, { "isoform_ac": "Q9FNI8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8/entry#Q9FNI8-1", "sequence": { "sequence": "MLYEGYLKYMKAKYGERSQGTYFMAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVGFMNKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGKFEAVSLPCLKTMRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLKYLKFQDDLSGSKIITNSGSLAKVNVVYVFNENDCADVVDIPRRNMVRNFLTSISGVSDMKISQHFVEFLYYYKDFDPLPQFCNLSRLKAEISLYFLEILPTILESCPNLKSLVMVLEFYLQEEDEPIIFSSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLRCSTHEDGFYILKDLLALPRGSSTCRIVVC", "length": 466, "header": "sp|Q9FNI8-1|FBD32_ARATH Isoform 1 of FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FNI8-1" }, "locus": { "chromosome": "5", "start_pos": 7551429, "end_pos": 7553537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22730.3", "url": "https://www.ensemblgenomes.org/id/AT5G22730.3" }, { "database": "Ensembl Peptide", "id": "AT5G22730.3", "url": "https://www.ensemblgenomes.org/id/AT5G22730.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCX4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCX4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BCX4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BCX4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNI8", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G22730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FNI8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 466, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FNI8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FNI8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FNI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNI8" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 27, "end_pos": 80, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 344, "end_pos": 346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LFU7-1", "uniprot_ac": "Q9LFU7", "uniprot_id": "Q9LFU7_ARATH", "mass": { "chemical_mass": 26352.0, "monoisotopic_mass": 26352.0 }, "refseq": {}, "gene_names": [ { "name": "F14F8.170", "type": "synonym", "evidence": [ { "id": "Q9LFU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ] }, { "name": "F14F8_170", "type": "synonym", "evidence": [ { "id": "Q9LFU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ] } ], "protein_names": [ { "name": "RING-type E3 ubiquitin transferase", "type": "recommended", "evidence": [ { "id": "Q9LFU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "Q9LFU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7", "locus": {} } ], "crossref": [ { "id": "AT5G15790", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G15790", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd23116", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23116", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "831435", "url": "https://www.ncbi.nlm.nih.gov/gene/831435", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LFU7", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LFU7*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G15790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G15790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMSSTTW", "url": "https://omabrowser.org/oma/group/FMSSTTW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46463", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46463", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46463:SF91", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46463:SF91", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G15790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G15790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BE16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BE16-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFU7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQATNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLRSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHETP", "length": 232, "header": "tr|Q9LFU7-1|Q9LFU7_ARATH Isoform 1 of RING-type E3 ubiquitin transferase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFU7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BE16-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7/entry#A0A1P8BE16-1", "sequence": { "sequence": "MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQATNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLRSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVNTFHVLPSQFSASHLLVFQSQTQTPSRVNRRVIQRSIE", "length": 263, "header": "tr|A0A1P8BE16-1|Q9LFU7_ARATH Computationally mapped isoform of RING-type E3 ubiquitin transferase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFU7-1" }, "locus": { "chromosome": "5", "start_pos": 5148723, "end_pos": 5150771, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G15790.4", "url": "https://www.ensemblgenomes.org/id/AT5G15790.4" }, { "database": "Ensembl Peptide", "id": "AT5G15790.4", "url": "https://www.ensemblgenomes.org/id/AT5G15790.4" } ] } }, { "isoform_ac": "Q9LFU7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7/entry#Q9LFU7-1", "sequence": { "sequence": "MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQATNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLRSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHETP", "length": 232, "header": "tr|Q9LFU7-1|Q9LFU7_ARATH Isoform 1 of RING-type E3 ubiquitin transferase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFU7-1" }, "locus": { "chromosome": "5", "start_pos": 5148722, "end_pos": 5150964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G15790.3", "url": "https://www.ensemblgenomes.org/id/AT5G15790.3" }, { "database": "Ensembl Peptide", "id": "AT5G15790.3", "url": "https://www.ensemblgenomes.org/id/AT5G15790.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 231, "end_pos": 231, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFU7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr231" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BE16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE16" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFU7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BE16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G15790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G15790", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LFU7", "url": "https://www.uniprot.org/uniprotkb/Q9LFU7" } ], "pmid": "" } ] } ] }, 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"total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FTA3-1", "uniprot_ac": "Q9FTA3", "uniprot_id": "Q9FTA3_ARATH", "mass": { "chemical_mass": 17056.0, "monoisotopic_mass": 17056.0 }, "refseq": {}, "gene_names": [ { "name": "F8L15.50", "type": "synonym", "evidence": [ { "id": "Q9FTA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3" } ] }, { "name": "F8L15_50", "type": "synonym", "evidence": [ { "id": "Q9FTA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3" } ] } ], "protein_names": [ { "name": "E2F-associated phosphoprotein", "type": "synonym", "evidence": [ { "id": "Q9FTA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FTA3", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3", "locus": {} } ], "crossref": [ { "id": "AT5G08320", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G08320", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830728", "url": "https://www.ncbi.nlm.nih.gov/gene/830728", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G08320", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G08320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFVVNCK", "url": "https://omabrowser.org/oma/group/IFVVNCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BE85", "url": "https://www.orthodb.org/?gene=A0A1P8BE85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FTA3", "url": "https://www.orthodb.org/?gene=Q9FTA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15967", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15967", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15967:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15967:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FTA3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FTA3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G08320", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G08320", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BE85", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BE85-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FTA3", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FTA3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPTNSQKTVSDDEEVDYSIKPEFYDSDIDDKDELWMDKKRDGRTSDALLSCPACFTTVCLECQRHEQYVTQYRAVFVVNCKVGTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTEIGVVDSEEIYHFFNVIPSEP", "length": 150, "header": "tr|Q9FTA3-1|Q9FTA3_ARATH Isoform 1 of E2F-associated phosphoprotein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FTA3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BE85-1", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3/entry#A0A1P8BE85-1", "sequence": { "sequence": "MASPTNSQKTVSDDEEVDYSIKPEFYDSDIDDKDELWMDKKRDGRTSDALLSCPACFTTVCLECQRYFPLSTSELGVLSSYDCYIPSRLCFLNVARAPLFNPHQCVC", "length": 107, "header": "tr|A0A1P8BE85-1|Q9FTA3_ARATH Computationally mapped isoform of E2F-associated phosphoprotein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FTA3-1" }, "locus": { "chromosome": "5", "start_pos": 2677037, "end_pos": 2678742, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G08320.2", "url": "https://www.ensemblgenomes.org/id/AT5G08320.2" }, { "database": "Ensembl Peptide", "id": "AT5G08320.2", "url": "https://www.ensemblgenomes.org/id/AT5G08320.2" } ] } }, { "isoform_ac": "Q9FTA3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FTA3/entry#Q9FTA3-1", "sequence": { "sequence": "MASPTNSQKTVSDDEEVDYSIKPEFYDSDIDDKDELWMDKKRDGRTSDALLSCPACFTTVCLECQRHEQYVTQYRAVFVVNCKVGTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTEIGVVDSEEIYHFFNVIPSEP", "length": 150, "header": "tr|Q9FTA3-1|Q9FTA3_ARATH Isoform 1 of E2F-associated phosphoprotein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FTA3-1" }, "locus": { "chromosome": "5", "start_pos": 2677045, 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], "protein_names": [ { "name": "Transmembrane CLPTM1 family protein", "type": "synonym", "evidence": [ { "id": "Q9FNN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8", "locus": {} } ], "crossref": [ { "id": "AT5G08500", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G08500", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "830749", "url": "https://www.ncbi.nlm.nih.gov/gene/830749", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008429", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008429", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G08500", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G08500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLWAHFY", "url": "https://omabrowser.org/oma/group/TLWAHFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21347", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21347", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21347:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21347:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G08500", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G08500", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BG69", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BG69-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BG69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNN8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPAGETAAVVEGGDGQQQRQAGGFGQTITGIIRIAVFCYFASKFFSPKQKPADPSKPTHLMSNLFQRGEPIDMWFYLSEHEKFNDFGNEGALIWHETNIPYAVWKPESTRTLSMTYYPSEALKNNGSLYAHVFFALSGYPIDLSDPEYQPLNCFGRTHPVATYLPKRKADKKKSLLGNPKDSDESHVEVEEVDGKDSDLKDEGPVEWVSYWKPNVTINLVDDFTRYPQHGVPPNIYPYLLVEPSTINYYPTVFFNEFWLLRDKLILINETVSELPLNLEVSPISMTKWQLFQQIDQSFQIHRSYGSMLDGESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVVGFSIYSLAYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFGFGGEDESVDTKKISDQEDDKKTN", "length": 590, "header": "tr|Q9FNN8-1|Q9FNN8_ARATH Isoform 1 of Transmembrane CLPTM1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FNN8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BG69-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8/entry#A0A1P8BG69-1", "sequence": { "sequence": "MWFYLSEHEKFNDFGNEGALIWHETNIPYAVWKPESTRTLSMTYYPSEALKNNGSLYAHVFFALSGYPIDLSDPEYQPLNCFGRTHPVATYLPKRKADKKKSLLGNPKDSDESHVEVEEVDGKDSDLKDEGPVEWVSYWKPNVTINLVDDFTRYPQHGVPPNIYPYLLVEPSTINYYPTVFFNEFWLLRDKLILINETVSELPLNLEVSPISMTKWQLFQQIDQSFQIHRSYGSMLDGESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVVGFSIYSLAYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFGFGGEDESVDTKKISDQEDDKKTN", "length": 516, "header": "tr|A0A1P8BG69-1|Q9FNN8_ARATH Computationally mapped isoform of Transmembrane CLPTM1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FNN8-1" }, "locus": { "chromosome": "5", "start_pos": 2748133, "end_pos": 2751888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G08500.2", "url": "https://www.ensemblgenomes.org/id/AT5G08500.2" }, { "database": "Ensembl Peptide", "id": "AT5G08500.2", "url": "https://www.ensemblgenomes.org/id/AT5G08500.2" } ] } }, { "isoform_ac": "Q9FNN8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8/entry#Q9FNN8-1", "sequence": { "sequence": "MASPAGETAAVVEGGDGQQQRQAGGFGQTITGIIRIAVFCYFASKFFSPKQKPADPSKPTHLMSNLFQRGEPIDMWFYLSEHEKFNDFGNEGALIWHETNIPYAVWKPESTRTLSMTYYPSEALKNNGSLYAHVFFALSGYPIDLSDPEYQPLNCFGRTHPVATYLPKRKADKKKSLLGNPKDSDESHVEVEEVDGKDSDLKDEGPVEWVSYWKPNVTINLVDDFTRYPQHGVPPNIYPYLLVEPSTINYYPTVFFNEFWLLRDKLILINETVSELPLNLEVSPISMTKWQLFQQIDQSFQIHRSYGSMLDGESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVVGFSIYSLAYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFGFGGEDESVDTKKISDQEDDKKTN", "length": 590, "header": "tr|Q9FNN8-1|Q9FNN8_ARATH Isoform 1 of Transmembrane CLPTM1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FNN8-1" }, "locus": { "chromosome": "5", "start_pos": 2748133, "end_pos": 2751888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G08500.1", "url": "https://www.ensemblgenomes.org/id/AT5G08500.1" }, { "database": "Ensembl Peptide", "id": "AT5G08500.1", "url": "https://www.ensemblgenomes.org/id/AT5G08500.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G08500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G08500", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZY44-1", "protein_name": "CLPTM1 regulator of GABA type A receptor forward trafficking", "gene_name": "CLPTM1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASVLRFHPPSSPWLLSLQVTSNGSIGRDPPAETQPQNPPPSQPSTCPACLRRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYLLALTIVVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRVRPAQVAGLFPRPTFKDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGEAPTAAAPVAEAPTAQGPSLLPPPPPARRPPCPCPPSLPRGPLCQRAPGSPSKASRGQKKGLAAPGPPHPLGLPVTTIPAAPAPLPPLPVALPLDSHLAPPAQHHWESW", "length": 701 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O96005-1", "protein_name": "Putative lipid scramblase CLPTM1", "gene_name": "CLPTM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAQEADGARSAVVAAGGGSSGQVTSNGSIGRDPPAETQPQNPPAQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATREEASTSLPTKPTQGASSASEPQEAPPKPAEDKKKD", "length": 669 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2NL17-1", "protein_name": "Putative lipid scramblase CLPTM1", "gene_name": "CLPTM1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAQEADGAGSAVVAAGGGSSGQVTSNGSVGRDPPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQQDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSAKSPWNFLGDELYEQSDEEQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHKVAGLLPRPTFQDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGEAPTAAAPVAEAPPAAGALSSAPSPTTTTEAAREEASTPPPSQAPQGPSSASEPQEAPPKPAEDKKRD", "length": 670 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54RJ1-1", "protein_name": "CLPTM1-like membrane protein cnrB", "gene_name": "cnrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNQGGAVAANGQRPQAQQQQQQGGIMGIISTLIRFMAIYYIASFAFSKFLGTGNNNNNGGVVLNNNNGTTNTSIPSNSVRLANSWPEGIEFNMKVYLSTSNETVGDWLVWEQDKLSYDWKDSNTIPTKNITFDTTPYLQNNGSLFAHIITSRRAYLNQPKSQLHKVHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWKPTLSLHLIVDHTIYPPDSIPKEIVSYFNITNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINYSSMGLFKWQLQIQMQKSLDMQESFGGGGNSAMGGASVGDEFKRMLTDNDPWILGLTLIVSVLHTIFEFLAFKNDIQFWKNNKSMEGLSVKTITLNCVCMGIIFLYLLDNETSYMILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKRIEFINKDEYMSKTKQYDDMAMKYLSWLLFPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTVYTFEFIMMTPQLFINYKLKSVSHLPWRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDDIIFIVYLYQRWIYPVDKKRSHYGSEEAEEVQQQDKKEIKEKVEEREEEKQEEEEEEKEKEEESTSSSKVTKRKTKKV", "length": 619 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6DEL2-1", "protein_name": "Putative lipid scramblase CLPTM1", "gene_name": "clptm1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAQETQATQQSSVSNGEVSSNGAAASGQVAQTGATAQDPQQQQQQQPSAWQVIKGVLFRIFIIWAISSWFRRGPSTPDPNTPAGAPRVPSRNLFPKDTLMDLYVYISQSEIFTDFNNTEELFWYQQDLVYGEWTTGDSGDGCYEYYKELDLSESVKQNGSIYMHIYFTKSGFHPDPKRKGQYRRLSTVHATRMLNKYKRRKFLKTKNLLTGETEADPEMIKRAESHGPVEIISHWHPNLTINMVDDHTAWVKGSVPPPLDQHVKFDAVSGDYYPIVYFNDYWNLQKDYYPINDTLLNLPLRLTYCPLSLWRWQLYAAQSARSPWNFLGEDTYEQSDEDQDSVKVALLETNPYLLGLTIVVSIVHSIFEFLAFKNDIQFWNSRQSLEGLSVRSIIFGVFQSLVVLLYILDNETNFVVQVSVFIGLLIDFWKITKVMDVRLDRENRIAGIVPRLVFKDKSTYVESSTKIYDDMAFKYLSWLLYPLFGCYAVYSLLYVEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKMKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPMMYRIGCLRDDVVFFIYLYQRWIYRVDPNRVNEFGTSGVDHSKDSSAQPAAGETPAAITEKPEGEKKND", "length": 631 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8VBZ3-1", "protein_name": "Putative lipid scramblase CLPTM1", "gene_name": "Clptm1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAQEADGAGSAVVAAGGGSSGQVTSNGSIGRDTPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPSPQDQSGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETSPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPCPTFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGEDVSAAASRAQASTAAGALTPAPSTAVSGEDASTVPKATSGACTASQPQEAPPKPAEDKKKD", "length": 664 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQX6-1", "protein_name": "Cleft lip and palate transmembrane protein 1 homolog", "gene_name": "Dmel\\CG3702", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRMESFFAMTKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTDFDLHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKLKTSQHLMNNGSVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLRVNRNYNLLASEKEKLEHELKHANLKDTIVSHWHPNLTVNLVVDQTNWAEGSVPPPLDDYVKFVDGGKTYLPILFVNDYWNLQREYQPINETTPELELHLTFQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQPEESDEDQDSLKETLLDTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGVFQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILGVLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEHKGWYSFVLNMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLNTFIDDIFAFVIKMPTMYRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGFSGEMEQQHAAQKLEGKTANGAIEGPQAAPAIKKTAAQKKQD", "length": 641 }, "evidence": [ { "id": "Q9FNN8", "url": "https://omabrowser.org/oma/group/Q9FNN8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "Q9FNN8", "url": "https://www.uniprot.org/uniprotkb/Q9FNN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FN10", "locus": {} } ], "crossref": [ { "id": "AT5G67430", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G67430", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd04301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "836879", "url": "https://www.ncbi.nlm.nih.gov/gene/836879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FN10", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FN10*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G67430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G67430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QSPSFHM", "url": "https://omabrowser.org/oma/group/QSPSFHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGA0", "url": "https://www.orthodb.org/?gene=A0A1P8BGA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FN10", "url": "https://www.orthodb.org/?gene=Q9FN10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47370", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47370", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47370:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47370:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G67430", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G67430", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN10", "url": "https://www.uniprot.org/uniprotkb/Q9FN10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN10-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], 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"MGKGFNVVVVREYDPKRDLTSVEELEESCEVGSLLVDLMGDPLARIRQSPSFHMLVAEIGNEIVGMIRGTIKMVTRGVNALRQADDVSPEINTTKLAFVSGLRVSPFYRRMGIGLKLVQRLEEWFLRNDAVYSYVQTENDNIASVKLFTEKSGYSKFRTPTFLVNPVFNHRVTVSRRVKIIKLAPSDAESLYRNRFSTTEFFPSDINSILTNKLSLGTYLAVPRGGDNVSGSLPDQTGSWAVISIWNSKDVYRLQVKGASRLKRMLAKSTRVFDGAFPFLKIPSFPNLFKSFAMHFMYGIGGEGPRAAEMVEALCSHAHNLARKSGCAVVAAEVASCEPLRVGIPHWKVLSPEDLWCLKRLRYDDDGVDWTKSPPGLSIFVDPREI", "length": 386, "header": "tr|Q9FN10-1|Q9FN10_ARATH Isoform 1 of Acyl-CoA N-acyltransferases (NAT) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FN10-1" }, "locus": { "chromosome": "5", "start_pos": 26910205, "end_pos": 26912103, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G67430.1", "url": "https://www.ensemblgenomes.org/id/AT5G67430.1" }, { "database": "Ensembl Peptide", "id": "AT5G67430.1", "url": "https://www.ensemblgenomes.org/id/AT5G67430.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 230, "end_pos": 230, 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Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G67430", "name": "", "url": 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"id": "Q9FN10", "url": "https://www.uniprot.org/uniprotkb/Q9FN10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FN10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN10" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 175, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": 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[ "Enzyme and Pathway" ] }, { "id": "PTHR47933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47933:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47933:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47934:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47934:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LFC5", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LFC5", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G01110", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G01110", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGD3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFC5", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFC5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIVHRIIPSRVKDPLTRFKPLKNLTTSSSPVFEPSSSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF", "length": 729, "header": "sp|Q9LFC5-1|PP360_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LFC5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGD3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5/entry#A0A1P8BGD3-1", "sequence": { "sequence": "MNQTTVKVFKFQFLFSIEIKLSLSQPQKMIVHRIIPSRVKDPLTRFKPLKNLTTSSSPVFEPSSSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF", "length": 757, "header": "tr|A0A1P8BGD3-1|PP360_ARATH Computationally mapped isoform of Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LFC5-1" }, "locus": { "chromosome": "5", "start_pos": 41768, "end_pos": 44512, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01110.2", "url": "https://www.ensemblgenomes.org/id/AT5G01110.2" }, { "database": "Ensembl Peptide", "id": "AT5G01110.2", "url": "https://www.ensemblgenomes.org/id/AT5G01110.2" } ] } }, { "isoform_ac": "Q9LFC5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5/entry#Q9LFC5-1", "sequence": { "sequence": "MIVHRIIPSRVKDPLTRFKPLKNLTTSSSPVFEPSSSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF", "length": 729, "header": "sp|Q9LFC5-1|PP360_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LFC5-1" }, "locus": { "chromosome": "5", "start_pos": 41768, "end_pos": 44375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01110.1", "url": "https://www.ensemblgenomes.org/id/AT5G01110.1" }, { "database": "Ensembl Peptide", "id": "AT5G01110.1", "url": "https://www.ensemblgenomes.org/id/AT5G01110.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGD3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGD3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC5", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC5", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGD3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGD3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC5", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC5", "url": "https://www.uniprot.org/uniprotkb/Q9LFC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 600, "end_pos": 602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" }, { "start_pos": 707, "end_pos": 709, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LFC5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 729, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9LFC5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9LFC5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 600, "end_pos": 602 }, { "start_pos": 635, "end_pos": 637 }, { "start_pos": 707, "end_pos": 709 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LFS0-1", "uniprot_ac": "Q9LFS0", "uniprot_id": "Q9LFS0_ARATH", "mass": { "chemical_mass": 42899.0, "monoisotopic_mass": 42899.0 }, "refseq": {}, "gene_names": [ { "name": "F1N13.180", "type": "synonym", "evidence": [ { "id": "Q9LFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ] }, { "name": "F1N13_180", "type": "synonym", "evidence": [ { "id": "Q9LFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ] } ], "protein_names": [ { "name": "Regulator of chromosome condensation (RCC1) family protein", "type": "synonym", "evidence": [ { "id": "Q9LFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFS0", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0", "locus": {} } ], "crossref": [ { "id": "AT5G16040", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G16040", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831461", "url": "https://www.ncbi.nlm.nih.gov/gene/831461", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G16040", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G16040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFVWGTG", "url": "https://omabrowser.org/oma/group/IFVWGTG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BGN0", "url": "https://www.orthodb.org/?gene=A0A1P8BGN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LFS0", "url": "https://www.orthodb.org/?gene=Q9LFS0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45982", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45982", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45982:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45982:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G16040", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G16040", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BGN0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BGN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFS0", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFS0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAKHVACGGRHTLAIVEWKYDQEETE", "length": 396, "header": "tr|Q9LFS0-1|Q9LFS0_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFS0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BGN0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0/entry#A0A1P8BGN0-1", "sequence": { "sequence": "MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVKSTNHQFLTLLIALKALIVFFPLRSLVAELIQSL", "length": 341, "header": "tr|A0A1P8BGN0-1|Q9LFS0_ARATH Computationally mapped isoform of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFS0-1" }, "locus": { "chromosome": "5", "start_pos": 5241189, "end_pos": 5243406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G16040.2", "url": "https://www.ensemblgenomes.org/id/AT5G16040.2" }, { "database": "Ensembl Peptide", "id": "AT5G16040.2", "url": "https://www.ensemblgenomes.org/id/AT5G16040.2" } ] } }, { "isoform_ac": "Q9LFS0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0/entry#Q9LFS0-1", "sequence": { "sequence": "MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAKHVACGGRHTLAIVEWKYDQEETE", "length": 396, "header": "tr|Q9LFS0-1|Q9LFS0_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFS0-1" }, "locus": { "chromosome": "5", "start_pos": 5240675, "end_pos": 5243473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G16040.1", "url": "https://www.ensemblgenomes.org/id/AT5G16040.1" }, { "database": "Ensembl Peptide", "id": "AT5G16040.1", "url": "https://www.ensemblgenomes.org/id/AT5G16040.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGN0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BGN0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BGN0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G16040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G16040", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AEW5-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "Rcc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPCPVQPLCSRNGPGSQGHTLGEGTGIPLTVEGCGRLSLATKRPCTTHWLAHTSLLTVPSRPSEAVKYAALLTEGAVCFPPLFGSWKSQPGVEGISDGSRYANSVSHRSHNTEPGLVLTLGQGDVGQLGLGESVLERKKPALVPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDTQVVKVASGNDHLVMLTTDGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPRCVLLKSRGTRGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLGTPGTGSCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPVVSSVACGASVGYAVSKDGRVFAWGMGTNYQLGTGQEDDAWSPVEMTGKQLENREVLTVSSGGQHTVLLVKDKTQS", "length": 502 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z0C9-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "RCC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGKRAAKKSPALEEPPERKKLKVSHPSHRTQPGLVLVLGQGDVGQLGLGQDVMERKKPALVQLPELMVQVEAGGMHTVCLSETGKIYTFGCNDEGALGRDTSEEGSECTPGPVELQERVVQVSAGDSHTAALTDDGRVFIWGSFRDNNGVIGLLEPMKKSTVPALLQLNVPVVKIVSGNDHLVMLTVDGDLFTCGCGEQGQLGRVPALFSNRGGRKGLQRLLVPQRVPVRGKGKMRFQDAFCGAYFTFAITREGHIYGFGLSNYHQLGTQGTEPCFSPQNLTSFKNSTKSWVGFSGGQHHTVCVDSEGKAYSLGRAEYGRLGLGEGAEEKSTPTVIPDLPSISSVACGASVGYAVSSDGRAFAWGMGTNHQLGTGEEEDVWSPVEMTGKQLENRLVLAVSSGGQHTALLVKDKARS", "length": 417 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7JUE9-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "Rcc1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQFGKVVCIRSSTQNFVKLGKHLFIAVLSLERKMPPKRIAKRRSPPEDAIPKSKKVKDPRNRGPAARSCQVSHRSHKTEPGLVLTLGQGDVGQLGLGESVLERKKPALVTVLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSAEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDMPVVKVASGNDHLVMLTTEGDLYTLGCGDQGQLGRVPELFANRGGRQGLERLLVPRCVLLKARGCRGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLGTPGTASCFIPQNLTSFKNSTKSWVGFSGGQHHTICMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPIVSSVACGASVGYAVSKDGRVFAWGMGTNYQLGTGQEEDAWSPVEMTGKQLENRVVLTVSSGGQHTVLLVKDKEQS", "length": 467 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P18754-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "RCC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS", "length": 421 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P21827-1", "protein_name": "Guanine nucleotide exchange factor SRM1", "gene_name": "SRM1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVKRTVATNGDASGAHRAKKMSKTHASHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDD", "length": 482 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25171-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "Rcc1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNVDKEAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLPAKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKT", "length": 547 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8VE37-1", "protein_name": "Regulator of chromosome condensation", "gene_name": "Rcc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPPKRIAKRRSPPEDAIPKSKKVKVSHRSHNTEPGLVLTLGQGDVGQLGLGESVLERKKPALVPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDAPVVKVASGNDHLVMLTNDGDLYTLGCGEQGQLGRVPELFANRGGRQGLGRLLVPRCVLLKSRGTRGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLGTPGTGSCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPVVSSVACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGKQLENRVVLTVSSGGQHTVLLVKDQAQS", "length": 421 }, "evidence": [ { "id": "Q9LFS0", "url": "https://omabrowser.org/oma/group/Q9LFS0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "Q9LFS0", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9LFS0", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q9LFS0", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFS0" }, { "id": "PF25390", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RCC1-like", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 384, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 360, "end_pos": 362 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FND8-1", "uniprot_ac": "Q9FND8", "uniprot_id": "PP409_ARATH", "mass": { "chemical_mass": 70188.0, "monoisotopic_mass": 70188.0 }, "refseq": {}, "gene_names": [ { "name": "MPO12.110", "type": "recommended", "evidence": [ { "id": "Q9FND8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ] }, { "name": "MPO12.110", "type": "synonym", "evidence": [ { "id": "Q9FND8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ] }, { "name": "MPO12_110", "type": "synonym", "evidence": [ { "id": "Q9FND8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ] } ], "protein_names": [ { "name": "Pentatricopeptide repeat-containing protein At5g40400", "type": "recommended", "evidence": [ { "id": "Q9FND8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FND8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FND8", "locus": {} } ], "crossref": [ { "id": "Q9FND8", "url": "https://alphafold.ebi.ac.uk/entry/Q9FND8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G40400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G40400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834038", "url": "https://www.ncbi.nlm.nih.gov/gene/834038", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050667", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050667", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G40400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1P8BH16", "url": "https://www.orthodb.org/?gene=A0A1P8BH16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FND8", "url": "https://www.orthodb.org/?gene=Q9FND8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47939", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47939", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47939:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47939:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47941", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47941", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FND8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FND8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G40400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G40400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BH16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BH16-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FND8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FND8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNLVSNLRFFSSYSSSIVPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRLTCKYLIQVLEQPSLPNHLPEN", "length": 610, "header": "sp|Q9FND8-1|PP409_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FND8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BH16-1", "url": "https://www.uniprot.org/uniprotkb/Q9FND8/entry#A0A1P8BH16-1", "sequence": { "sequence": "MCSKTRRSNPVSVRGDANHLSFLRTQSIVPYVNIYILHLNGILNRCGTNTYSFSSKPLPSTASVSLFSLRFMKNLVSNLRFFSSYSSSIVPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRLTCKYLIQVLEQPSLPNHLPEN", "length": 681, "header": "tr|A0A1P8BH16-1|PP409_ARATH Computationally mapped isoform of Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FND8-1" }, "locus": { "chromosome": "5", "start_pos": 16166231, "end_pos": 16168853, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40400.2", "url": "https://www.ensemblgenomes.org/id/AT5G40400.2" }, { "database": "Ensembl Peptide", "id": "AT5G40400.2", "url": "https://www.ensemblgenomes.org/id/AT5G40400.2" } ] } }, { "isoform_ac": "Q9FND8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FND8/entry#Q9FND8-1", "sequence": { "sequence": "MKNLVSNLRFFSSYSSSIVPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRLTCKYLIQVLEQPSLPNHLPEN", "length": 610, "header": "sp|Q9FND8-1|PP409_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FND8-1" }, "locus": { "chromosome": "5", "start_pos": 16166438, "end_pos": 16168870, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G40400.1", "url": "https://www.ensemblgenomes.org/id/AT5G40400.1" }, { "database": "Ensembl Peptide", "id": "AT5G40400.1", "url": "https://www.ensemblgenomes.org/id/AT5G40400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 541, "end_pos": 541, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FND8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FND8" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser541" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BH16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH16" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FND8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FND8" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BH16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G40400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FND8", "url": "https://www.uniprot.org/uniprotkb/Q9FND8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FND8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 610, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FND8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FND8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", 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"https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G22700", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22700", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF25", 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"MSNRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDIDAFDDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRFSFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVIIDAPRLAYLSLKDDQSASFVISNLGSSAKADIKVSFNVNDIWDLPVTFERSNVGKLLTGLSSIRDLTISGTTLMIICHYLKHEPMPQFCNMVRLNARFYDCDLEMLPCVLESCPNLKSLVLGLLSSAETEQQSRVSSVPPCFLSSLEFVEIRSRLCRKRYVMKVARYFAKNSVMLKKFVYVGRVSIQEEDLLALLWRYSICEIEVRGLRR", "length": 437, "header": "sp|Q9FNJ1-1|FDL47_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FNJ1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BHD3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ1/entry#A0A1P8BHD3-1", "sequence": { "sequence": "MVSICKPWIIILKHSVFALLFVMQITCLECFSQKRNQMSNRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDIDAFDDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRFSFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVIIDAPRLAYLSLKDDQSASFVISNLGSSAKADIKIICHYLKHEPMPQFCNMVRLNARFYDCDLEMLPCVLESCPNLKSLVLGLLSSAETEQQSRVSSVPPCFLSSLEFVEIRSRLCRKRYVMKVARYFAKNSVMLKKFVYVGRVSIQEEDLLALLWRYSICEIEVRGLRR", "length": 433, "header": "tr|A0A1P8BHD3-1|FDL47_ARATH Computationally mapped isoform of F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNJ1-1" }, "locus": { "chromosome": "5", "start_pos": 7545481, "end_pos": 7547494, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22700.6", "url": "https://www.ensemblgenomes.org/id/AT5G22700.6" }, { "database": "Ensembl Peptide", "id": "AT5G22700.6", "url": "https://www.ensemblgenomes.org/id/AT5G22700.6" } ] } }, { "isoform_ac": "A0A1P8BHE0-1", 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"Ensembl Peptide", "id": "AT5G22700.5", "url": "https://www.ensemblgenomes.org/id/AT5G22700.5" } ] } }, { "isoform_ac": "Q9FNJ1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ1/entry#Q9FNJ1-1", "sequence": { "sequence": "MSNRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDIDAFDDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRFSFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVIIDAPRLAYLSLKDDQSASFVISNLGSSAKADIKVSFNVNDIWDLPVTFERSNVGKLLTGLSSIRDLTISGTTLMIICHYLKHEPMPQFCNMVRLNARFYDCDLEMLPCVLESCPNLKSLVLGLLSSAETEQQSRVSSVPPCFLSSLEFVEIRSRLCRKRYVMKVARYFAKNSVMLKKFVYVGRVSIQEEDLLALLWRYSICEIEVRGLRR", "length": 437, "header": "sp|Q9FNJ1-1|FDL47_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FNJ1-1" }, "locus": { "chromosome": "5", "start_pos": 7545481, "end_pos": 7549393, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22700.4", "url": "https://www.ensemblgenomes.org/id/AT5G22700.4" }, { "database": "Ensembl Peptide", "id": "AT5G22700.4", "url": "https://www.ensemblgenomes.org/id/AT5G22700.4" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 243, "end_pos": 243, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNJ1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser243" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHD3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHD3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FNJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNJ1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BHD3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BHD3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ1" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G22700", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22700", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNJ1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], 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"Thioesterase/thiol ester dehydrase-isomerase superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LK77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK77", "locus": {} } ], "crossref": [ { "id": "AT5G48370", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G48370", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd03442", "url": 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"PTHR12655", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12655", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12655:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12655:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT5G48370", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G48370", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1R7T3J1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1R7T3J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3J1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MR85", "url": "https://www.uniprot.org/uniprotkb/A8MR85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MR85-1", "url": "https://www.uniprot.org/uniprotkb/A8MR85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK77-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSPRPISVVSTFASPSSTSDPTRKPLSLWPGMYHSPVTTALWEARSKIFESLLDPPKDAPPQSQLLTRTPSHSRTTIFYPFSTDFILREQYRDPWNEVRIGILLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVHKIVLKKPICVDIDLKIVASVIWVGRSSIEIQLEVMQSELKDVKASSDSVALTANFIFVARDSKTGKAAPINRLSPETEVEKLLFEEAEARNNLRKKKRGGDRREFDHGECKKLEAWLAEGRIFSDMPALADRNSILLKDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYTFAGLVPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTQLDKQDCPLINIEVVAHVTSPEIRSSEVSNTFYFKFTVRPEAKARNNGFKLRNVVPATEEEARHILERMDAEALKSSKQQCVGTILQ", "length": 438, "header": "tr|Q9LK77-1|Q9LK77_ARATH Isoform 1 of Thioesterase/thiol ester dehydrase-isomerase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK77-1" }, "isoforms": [ { "isoform_ac": 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}, { "isoform_ac": "A8MR85-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK77/entry#A8MR85-1", "sequence": { "sequence": "MNSPRPISVVSTFASPSSTSDPTRKPLSLWPGMYHSPVTTALWEARSKIFESLLDPPKDAPPQSQLLTRTPSHSRTTIFYPFSTDFILREQYRDPWNEVRIGILLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVHKIVLKKPICVDIDLKIVASVIWVGRSSIEIQLEVMQSELNVKASSDSVALTANFIFVARDSKTGKAAPINRLSPETEVEKLLFEEAEARNNLRKKKRGGDRREFDHGECKKLEAWLAEGRIFSDMPALADRNSILLKDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYTFAGLVPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTQLDKQDCPLINIEVVAHVTSPEIRSSEVSNTFYFKFTVRPEAKARNNGFKLRNVVPATEEEARHILERMDAEALKSSKQQCVGTILQ", "length": 437, "header": "tr|A8MR85-1|Q9LK77_ARATH Computationally mapped isoform of Thioesterase/thiol ester dehydrase-isomerase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK77-1" }, "locus": { "chromosome": "5", "start_pos": 19598523, "end_pos": 19600644, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48370.2", "url": "https://www.ensemblgenomes.org/id/AT5G48370.2" }, { "database": "Ensembl Peptide", "id": "AT5G48370.2", "url": "https://www.ensemblgenomes.org/id/AT5G48370.2" } ] } }, { "isoform_ac": "Q9LK77-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK77/entry#Q9LK77-1", "sequence": { "sequence": "MNSPRPISVVSTFASPSSTSDPTRKPLSLWPGMYHSPVTTALWEARSKIFESLLDPPKDAPPQSQLLTRTPSHSRTTIFYPFSTDFILREQYRDPWNEVRIGILLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVHKIVLKKPICVDIDLKIVASVIWVGRSSIEIQLEVMQSELKDVKASSDSVALTANFIFVARDSKTGKAAPINRLSPETEVEKLLFEEAEARNNLRKKKRGGDRREFDHGECKKLEAWLAEGRIFSDMPALADRNSILLKDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYTFAGLVPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTQLDKQDCPLINIEVVAHVTSPEIRSSEVSNTFYFKFTVRPEAKARNNGFKLRNVVPATEEEARHILERMDAEALKSSKQQCVGTILQ", "length": 438, "header": "tr|Q9LK77-1|Q9LK77_ARATH Isoform 1 of Thioesterase/thiol ester dehydrase-isomerase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK77-1" }, "locus": { "chromosome": "5", "start_pos": 19598486, "end_pos": 19600708, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48370.1", "url": "https://www.ensemblgenomes.org/id/AT5G48370.1" }, { "database": "Ensembl Peptide", "id": "AT5G48370.1", "url": "https://www.ensemblgenomes.org/id/AT5G48370.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 376, "end_pos": 376, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser376" }, { "start_pos": 377, "end_pos": 377, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser377" }, { "start_pos": 380, "end_pos": 380, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser380" }, { "start_pos": 382, "end_pos": 382, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr382" }, { "start_pos": 384, "end_pos": 384, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Tyr384" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T3J1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3J1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T3J1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3J1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9LK77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK77" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT5G48370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48370", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1R961-1", "protein_name": "Acyl-coenzyme A thioesterase 9, mitochondrial isoform X1", "gene_name": "acot9.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLSPRVLKSASSLMCRGFSMGQMCRQGKAPDMADGNTFLLVSNVRNRLREIVGASTNWRDHQQALAERASLTQYLANSQDELPTKTMKDSAIEAHLPLGTQPALREKYLNYHNSVRFGRILEDLDSLAVLICYSHTWNKELQRSPLSIVTALVDKIDMRKNIIYPDCDIKFTGHVTWVGKTSIEAKMHMSQFHDGVYSDVLDATFVMVARDPENKRAAFINPLKPEGPEEEAIFQQGEINKKRRVELSTASLLKVAPTAEERTLIHNQFLNTLDTRTVSFRSRILPPNSVWMEDAKMKGLEICHPQERNIFNRIFGGFLMRKAYELGWANACAFAGCRPTLVAVDDILFRRPVEIGSLLLLSSQVCYTEGMHVQVRVHTEVLDPLTRQHSTTNVFHFTFRVDKDVPAVVPQSYGESMLYLDGKRHFDETMRGQS", "length": 434 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F7ETS0-1", "protein_name": "Acyl-CoA thioesterase 9", "gene_name": "Acot9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRAAMRLWTLNKGLLTHGRGLAYGSENKICKPLHIQEVRNKLREIVGVSTIWRDHVKAMEERKLLHNFLATSQKALPPRKMKDSYIEVLLPLGSDPDLRDKYLTVQNTVRFGRILEDLDSLGVLVCYMHNQNHSTKMSPLSIVTVLVDKIDMCKYSLSPEQDIKFTGHVSWVGKTSMEVKMKMFQSSYSFHMHSDDKFWPVLDATFVMVARDSENKGPAFVNPLVPENKEEEELITQGELNKSRRIAFSTTSLLKVAPNSEERNVIHELFLNTLDPKTISFQSRILPPKAVWMEDTKLKSLDICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIMFQKPVEVGSLLFLSSQVCFTQDNYIQVRVHSEVASLDSREHMTTNVFHFTFMSEKEVPLIFPKTYGESMLYLDGQRHFKSMSTPVILKKNYTVEP", "length": 445 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I903-1", "protein_name": "Acyl-coenzyme A thioesterase 9, mitochondrial isoform X1", "gene_name": "Acot9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKRAAMRLCTLNRGLFIHGRGLTQGYQYTPKQGPLHMREACSSIHVNHVRDKLREIVGVSTNWRDHVKAMEERKLLHNFLAKSQKALPPRKMKDSYIEVLLPLGSDPGLRDKYLTVQNTVRFGRILEDLDSLGVLVCYMHNRNHSVTMSPLSIVTALVDKIDMCKQSLSPEQDIKFTGHVSWVGKTSMEVKMKMFQLHKDDAFWPVLDATFVMVARDSENKGPAFVNPLIPENAEEEELFKQGELNKGRRIAFSSTSLLKMAPSPEERNTIHEMFLSTLDPKTISFHSRILPPNSVWMEDTKLKSLDICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVTVDDIMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLGSNEHMTTNVFHFTFMSEREVPLVFPKTYGESMLYLDGKRHFKSMSAPVTLKKDYSVEP", "length": 449 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3SWX2-1", "protein_name": "Acyl-coenzyme A thioesterase 9, mitochondrial", "gene_name": "ACOT9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRAALRLCTLSKGLLAPSRGLTQESQNPENVFHIREVRDKLREIVGASTNWRDHVKAMEERKLLHSFLAKSQKGLPPRTMKDSYIEVFLPLGSQPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKNLSPEQDIKFSGHVSWVGKTSMEVKMHMFQLHGNDFSPVLDATFVMVARDSENKGPAFVNPLILESPEEEELFQQGELNKGRRVAFSSTSLLKMAPTAEERTTIHEMFLNTLDPKTISFRSRVLPANSVWMENSKLKSLDICHPQERNIFNRIFGGFLMRKAYELGWATACNFGGSRPFIVAVDDIMFQKPVEVGSLLFLSAQVCFTQGNYIQVRVHSEVASLQDKEHMTTNVFHFTFMSEKEVPLVFPRTYGESMLYLDGQRHFKSMSAPVTLKRNYVVEP", "length": 437 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9R0X4-1", "protein_name": "Acyl-coenzyme A thioesterase 9, mitochondrial", "gene_name": "Acot9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRAAIRLWTLNKGLLTHGRGLSQGSQYKISEPLHIHQVRDKLREIVGVSTVWRDHVKAMEERKLLHSFLPKSQKVLPPRKMRDSYIEVLLPLGTDPELRDKYVTVQNTVRFGRILEDLDSLGVLVCYMHNHNHSTKMSPLSIVTVLVDKIDMCKHSLSPEQDIKFTGHVSWVGNTSMEVKMKMFQLHNDEKYWPVLDATFVMVARDSENKGPAFVNPLIPENKEEEELFKQGELNKSRRIAFSTSSLLKVAPSSEERNIIHELFLTTLDPKTISFQSRILPPKAVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIMFQKPVEVGSLLFLSSQVCFTQDNYIQVRVHSEVSSLDSREHMTTNVFHFTFMSEKEVPLIFPKTYGESMLYLDGQRHFKSMSTPVTLKKDYPVEP", "length": 439 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y305-1", "protein_name": "Acyl-coenzyme A thioesterase 9, mitochondrial", "gene_name": "ACOT9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRRAALRLCALGKGQLTPGRGLTQGPQNPKKQGIFHIHEVRDKLREIVGASTNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHVSWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFVNPLIPESPEEEELFRQGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGESMLYLDGQRHFNSMSGPATLRKDYLVEP", "length": 439 }, "evidence": [ { "id": "Q9LK77", "url": "https://omabrowser.org/oma/group/Q9LK77/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" }, { "name": "fatty acyl-CoA hydrolase activity", "id": "GO:0047617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047617", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "acyl-CoA metabolic process", "id": "GO:0006637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006637", "evidence": [ { "database": "UniProtKB", "id": "Q9LK77", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LK77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK77" }, { "id": "PS51770", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51770" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HotDog ACOT-type", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 201, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 376, 377, 380, 382, 384 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FNF6-1", "uniprot_ac": "Q9FNF6", "uniprot_id": "Q9FNF6_ARATH", "mass": { "chemical_mass": 83851.0, "monoisotopic_mass": 83851.0 }, "refseq": { "ac": "NP_001332760", "name": "prolyl oligopeptidase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332760" }, "gene_names": [ { "name": "MOP9.8", "type": "recommended", "evidence": [ { "id": "Q9FNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ] }, { "name": "MOP9.8", "type": "synonym", "evidence": [ { "id": "NP_001332760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332760" } ] }, { "name": "MOP9_8", "type": "synonym", "evidence": [ { "id": "NP_001332760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332760" }, { "id": "Q9FNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ] } ], "protein_names": [ { "name": "Prolyl oligopeptidase family protein", "type": "synonym", "evidence": [ { "id": "Q9FNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6/entry#names_and_taxonomy" } ] }, { "name": "prolyl oligopeptidase family protein", "type": "synonym", "evidence": [ { "id": "NP_001332760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332760" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MOP9.8", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6", "locus": {} } ], "crossref": [ { "id": "AT5G24260", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G24260", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832493", "url": "https://www.ncbi.nlm.nih.gov/gene/832493", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002469", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002469", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G24260", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24260", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VTHMTPQ", "url": "https://omabrowser.org/oma/group/VTHMTPQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11731", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11731", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11731:SF193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11731:SF193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00930", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00930", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001332760", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001332760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G24260", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G24260", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1R7T3L2", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1R7T3L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNF6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADKDVPFGVEDIVQTPLPGYVAPTAVSFSPDDSLITYLFSPEKNLKRRVYAFDVNKGESNLVFSPPDGGVDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKMRFIVVPLPAGVYMKDLSSSPNPELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLLKNQTQQLTSGANGSTLSHGLAEYIAQEEMDRRNGYWWSLDSKFIAYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHAYPFAGALNSTLRLGVVSSAGGGKTTWMNLVCGGRGNTEDEYLGRVNWLPGNVLIVQVLNRSQSKLKIISFDINTGQGNVLLTEESDTWVTLHDCFTPLEKVPSSRGSGGFIWASERTGFRHLYLYESDGTCLGAITSGEWMVEQIAGVNEPMSLVYFTGTLDGPLETNLYCAKLEAGNTSRCQPMRLTHGKGKHIVVLDHQMKNFVDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLEPPEFVQIQANDGKTTLYGAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYDSWINTVDMRTQYLRSRGILVWKLDNRGTARRGLKFESWMKHNCGYVDAEDQVTGAKWLIEQGLAKPDHIGVYGWSYGGYLSATLLTRYPEIFNCAVSGAPVTSWDGYDSFYTEKYMGLPTEEERYLKSSVMHHVGNLTDKQKLMLVHGMIDENVHFRHTARLVNALVEAGKRYELLIFPDERHMPRKKKDRIYMEQRIWEFIEKNL", "length": 746, "header": "tr|Q9FNF6-1|Q9FNF6_ARATH Isoform 1 of Prolyl oligopeptidase family protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.8 PE=1 SV=1 CANONICAL=Q9FNF6-1" }, "isoforms": [ { "isoform_ac": "A0A1R7T3L2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6/entry#A0A1R7T3L2-1", "sequence": { "sequence": "MADKDVPFGVEDIVQTPLPGYVAPTAVSFSPDDSLITYLFSPEKNLKRRVYAFDVNKGESNLVFSPPDGGVDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKMRFIVVPLPAGVYMKDLSSSPNPELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLLKNQTQQLTSGANGSTLSHGLAEYIAQEEMDRRNGYWWSLDSKFIAYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHAYPFAGALNSTLRLGVVSSAGGGKTTWMNLVCGGRGNTEDEYLGRVNWLPGNVLIVQVLNRSQSKLKIISFDINTGQGNVLLTEESDTWVTLHDCFTPLEKVPSSRGSGGFIWASERTGFRHLYLYESDGTCLGAITSGEWMVEQIAGVNEPMSLVYFTGTLDGPLETNLYCAKLEAGNTSRCQPMRLTHGKGKHIVVLDHQMKNFVDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLEPPEFVQIQANDGKTTLYGAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYDSWINTVDMRTQYLRSRGILVWKVLQILFLLSFLLRKMLNKVYSKMML", "length": 587, "header": "tr|A0A1R7T3L2-1|Q9FNF6_ARATH Computationally mapped isoform of Prolyl oligopeptidase family protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.8 PE=1 SV=1 CANONICAL=Q9FNF6-1" }, "locus": { "chromosome": "5", "start_pos": 8234723, "end_pos": 8238265, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24260.5", "url": "https://www.ensemblgenomes.org/id/AT5G24260.5" }, { "database": "Ensembl Peptide", "id": "AT5G24260.5", "url": "https://www.ensemblgenomes.org/id/AT5G24260.5" } ] } }, { "isoform_ac": "Q9FNF6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6/entry#Q9FNF6-1", "sequence": { "sequence": "MADKDVPFGVEDIVQTPLPGYVAPTAVSFSPDDSLITYLFSPEKNLKRRVYAFDVNKGESNLVFSPPDGGVDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKMRFIVVPLPAGVYMKDLSSSPNPELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLLKNQTQQLTSGANGSTLSHGLAEYIAQEEMDRRNGYWWSLDSKFIAYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHAYPFAGALNSTLRLGVVSSAGGGKTTWMNLVCGGRGNTEDEYLGRVNWLPGNVLIVQVLNRSQSKLKIISFDINTGQGNVLLTEESDTWVTLHDCFTPLEKVPSSRGSGGFIWASERTGFRHLYLYESDGTCLGAITSGEWMVEQIAGVNEPMSLVYFTGTLDGPLETNLYCAKLEAGNTSRCQPMRLTHGKGKHIVVLDHQMKNFVDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLEPPEFVQIQANDGKTTLYGAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYDSWINTVDMRTQYLRSRGILVWKLDNRGTARRGLKFESWMKHNCGYVDAEDQVTGAKWLIEQGLAKPDHIGVYGWSYGGYLSATLLTRYPEIFNCAVSGAPVTSWDGYDSFYTEKYMGLPTEEERYLKSSVMHHVGNLTDKQKLMLVHGMIDENVHFRHTARLVNALVEAGKRYELLIFPDERHMPRKKKDRIYMEQRIWEFIEKNL", "length": 746, "header": "tr|Q9FNF6-1|Q9FNF6_ARATH Isoform 1 of Prolyl oligopeptidase family protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.8 PE=1 SV=1 CANONICAL=Q9FNF6-1" }, "locus": { "chromosome": "5", "start_pos": 8234684, "end_pos": 8238294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24260.2", "url": "https://www.ensemblgenomes.org/id/AT5G24260.2" }, { "database": "Ensembl Peptide", "id": "AT5G24260.2", "url": "https://www.ensemblgenomes.org/id/AT5G24260.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 475, "end_pos": 475, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNF6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Tyr475" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T3L2", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3L2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FNF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNF6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1R7T3L2", "url": "https://www.uniprot.org/uniprotkb/A0A1R7T3L2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G24260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24260", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8QP51-1", "protein_name": "Dipeptidyl peptidase 9", "gene_name": "dpp9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYRGKRVKLEDETEGSWKSFAAVRMTAVDDISDSTEVVEMEDVPSQFFVEKHSWDGLRDIIHNSRMYSGMVINKAPHDFQFVQKHDESGPHSHRLYYLGMPYGSRENSLLYSEIPKKIRKEALLVLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDYHAQSGLFLFQASNSLFYCRDGGHNGFIQAAPMKPMEIKTQCSGIRMDPKISPGDPSFIAFINNNDLWVTNIETAEERRLTFCHKGLNNVKEDPKSAGVATFVIQEEFDRFTGYWWSPAATEDADGGKTLQLLYEEVDESEVEIIHVPSPALEERKADVYRYPRTGSKNPQISLKLAEIRTDQQGKMISAQNKELVLPFTTLFPGVEYIARAGWTKDGKFAWAVLLDRSQQKLQLVLLPPALFIPVSVDDPQWEEHVEAMPEGVQPFIIYEEITDIWINVHDIFYPFIQTSNDKISFLWVNESQTGFCHLYRITSLLKPGCHQWSREYSPSEDDFKCSTEEEVALTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVSYESPGEIVRLTKPGFSHSCSVSQNFDMFISHYSNVSTPPCVHVYKLTGADSDPLHKEPEFWASMMEATGCRPDYIPPEIFSFPASSGFRLYGMLYKPHNLKPGKKHPTILFVYGGPQVQLVNNSYKGVKYLRLNTLASLGYAVVVIDGRGSCQRGLKFEGALKNKMGQVEIEDQVEGLQFVAEKYKFIDLSRVAIHGWSYGGFLSLMGLIHRPNIFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGYEAGSVALHVDKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEIMLLYFLQQHL", "length": 885 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A3Q2U8J3-1", "protein_name": "dipeptidyl-peptidase IV", "gene_name": "DPP9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQKIKRVRLENETAGSWRSFLSSSEEETMTAVDTLSDSSEVVEMEDVPSEFQVQKHSWDGLRDIIHSSRKYSGMIVNKAPHDFQFVRKTEESSPHSHRLYYLGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGMYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCTGPRMDPKICPADPAFFSFINNNDLWVANIETGEEKRMTYCHKGLSNVLDDPKSAGVATFVIQEEFDRFTGYWWCPTSSTEGPENLKTLRILYEEVDESEVEIIHVPSPALEERKTDSYRYPRTGSKNPKITLKLAEFKADSKGKIVCAQDKELVQPFAALFPTVEYIARAGWTRDGKYAWAMFLDRPQQRLQLILLPPALFIPVPENEEQRAEFAKIVPENVQPFVIYEEITDVWINVHDIFYPFIQPEGEEEELCFIRANECKTGFCHLYRVTVVLKQGSYDWVQPYVHSEDDFKCLIKEEVALTGGEWEVLARHGSKGSTCLPGQWGWILLPCTVCSSLQTMLARKSTWASAFGNCKIWVNEATKLVYFQGTKDTPLEHHLYVVSYESPGEIVRLTIPGFSHSCSMSQNFDMFISHYSSVSTPPCVHVYKLSGSDDDPLHKQPKFWASMMEAASCPPDYVPPEIFHFRTQSDVELYGMVYKPHDVQPGKKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLYYVAEKYGFIDLSRVAIHGWSYGGFLSLMGLICKPNVFKIAIAGAPVTVWMAYDTGYTERYMDIPENNQQGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEITLLHFLQEYL", "length": 931 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6GBE0-1", "protein_name": "dipeptidyl-peptidase IV", "gene_name": "Dpp9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLGSALTLSNQKPPLPGQRRRSCRVPGVRRLRCPPAPATSGPSSWAWSVACEAPPALGTPCPACPPRRARVRTPRLQLPWKLLGPFRSFSPPSQEPQRMSGGVSPVEQVAAGDMDDTAARFCVQKHSWDGLRNIIHGSRKSSGLIVSKAPHDFQFVQKPDESGPHSHRLYYLGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNNDLWVANIETGEERRLTFCHQGSASVLDNPKSAGVATFVIQEEFDRFTGCWWCPTASWEGSGGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAELQTDHQGKIVSSCEKELVQPFSSLFPKVEYIARAGWTRDGRYAWAMFLDRPQQRLQLVLLPPALFIPTLESEAQWQEAARAIPKNVQPFIIYEEVTNVWINVHDIFHPFPQAEGQQDFCFLRANECKTGFCHLYRVTVDLKTNDYDWTEPLSPAEDEFKCPIKEEVALTSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVSYESAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIEDQVEGLQYVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCRESGEHYEVTLLHFLQEHL", "length": 961 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7FZ63-1", "protein_name": "dipeptidyl-peptidase IV", "gene_name": "Dpp9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLIPSQSQFITSVSPLLPVITLNPQSSASDFNPCIISPTLRVQALGPSQPLPIHSIVQPPTQAPLGAPWAITNLLSRSWDWCPGGVEYSRQFPAGSWGDRALRDTSLPSAAQGMLAAPRGWEAQLESNQVDRVRPHRRRLPPAWKVRAPRLQLPWKLLGPFRSFSLPSQESQRMSSGVSPTEQVAAGDMDDTAARFCVQKHSWDGLRNIIHGSRKSSGLIISKAPHDFQFVQKPDESGPHSHRLYYLGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGSANVLDDPKSAGVATFVIQEEFDRFTGCWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAEIQTDTQGKIVSSCEKELVQPFSSLFPKVEYIARAGWTRDGRYAWAMFLDRPQQRLQLVLLPPALFIPSPENEAQRQAAARAVPKNVQPFVIYEEVTNVWINVHDIFHPFPQAEGQQDFSFLRANECKTGFCHLYKVTVELKTSDYDWTEPLSPTEDEFKCPIKEEVALTSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVSYESAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLSGSDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRKHPTVLFVYGGPQVQLVTNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQYVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEHL", "length": 1037 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9TGY1-1", "protein_name": "dipeptidyl-peptidase IV", "gene_name": "DPP9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRKVKKLRLDNVNTGHWRSFSLNSQGAERMATGALTSERGDAAETEDPASRFQVQKHSWEGLRSIIHGSRKNSGLVVNKAPHDFQFVQKTDESGPHSHRLYYLGMPYGSRENSLLYSEIPRKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHKGLSSVLDDPKSAGVATFVIQEEFDRFTGYWWCPTASWEGSEGCKTLRILYEEVDESEVEIIHVPSPALEERKTDSYRYPRTGSKNPRIALKLAEFQTDSQGKIVSTQEKELVQPFSLLFPKVEYLARAGWTQDGKYAWAMFLDRPQQRLQLVLLPPALFIPTTDNEEQRAAFARAVPRDVQPYVVYEEVTDVWINVHDIFYPFPQAEGVDELCFIRANECKTGFCHLYKVTAVLRPRGYDWTQPFSPGDDEFKCPIKEEIALTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVSYEVAGEIVRLTTPGFSHSCSMSQNFDMFISHYSSVGTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHAVQPGRKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQLGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEHL", "length": 891 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "I3LM79-1", "protein_name": "dipeptidyl-peptidase IV", "gene_name": "DPP9", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRKVKKLRLDNANTGRWRSFSLNSEGAERMATGAPTSDRGDRGDTVEMEDPASRFQVQKHSWDELRNIIHGSRKNSGLIVNKAPHDFQFVQKTDESGPHSHRLYYLGMPYGSRENSLLYSEIPRKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEEQRLTFCHRGLSSVLDDPKSAGVATFVIQEEFDRFTGYWWCPTASWEGSDGCKTLRILYEEVDESEVEIIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAEFQTDSQGKIVSTQEKELVQPFRTLFPKVEYIARAGWTRDGKYAWAMFLDRPQQRLQLVLLPPALFIPTTESEEQRAALARAVPRNVQPYVVYEEVTDVWINVHDIFYPFPQPEGEDELCFIRANECKTGFCHLYKVTAVLKPHGYDWTQPFNPGEDEFKCPIKEEIALTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVSYETAGEIVRLTTPGFSHSCSMSQNFDMFISHYSSVSTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHAVQPGKKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQLGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEYL", "length": 894 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q54U01-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MESKKYKIEGRDELLDKEEILKLLGEESGSSAPYSFEFNDSKNHLYFLSNVKDQKNIKNIHYIDMNSDSKEIKPLFNYVDKDVELSIEDQLQRERMRTAANGITQFTFDQKHQFIIAPINNKINKIDIKESITKPIIKEIVGETYNHQISADGKIVSFLKDKDIWITDISTNAMYRITFSNDEKHHKFRYAGDIGFIYAEEFSRYTGYWWSPIVGTCVKTGKPMYTICYLEEDETNVMDYHIPTSDLRGKTTQYKYPLAGEKNSICKVCLVSFVLPTRTTFQDSKIEIVKSELFDLKTQFPWAEYITRAGWTPNGHSIYLQLLDRKQQHLALVMVPLHVFAEDYSSSSSSSVKSIPKLPVLIEETTSVWINIEFSFQFLKSIENQLIWSNEQSGYRHLYLIKWDKNFTNIQSTPITLSTCNDNDNDNNNWMVSSDDIHIDEKRKLVYFTGTKDTCLEQHLYVTRFDKPNSEIKRLSHANFSHRSISISSNFKKFITTYSNISTISKTEVFDLIYNDDNNDNNDIYPIVKSSFFINDDDDDDDNDKKKININIPKIFNFKNSKGVTIYGQYTLPSDYSKDKKYPTVVYVYGGPHVQIVRNQYNYIKQHYTNFGFIQVMIDNVGSANRGLEFESHIREKMGQVEIGDQVEGINYLVGNDIVSIDVNRIAISGWSYGGYNSLMAISQRPDVFKIAVCGAPVSDWRLYNTGYTERYMNVPQDNIDGYKLGDTTHYSFPTEENRLLLIHGLQDENVHFSNTIYIIDHLTKTQKPYILKTLPNERHGVRNTDNRIYIGLFVINHLLKNL", "length": 803 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86TI2-1", "protein_name": "Dipeptidyl peptidase 9", "gene_name": "DPP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATTGTPTADRGDAAATDDPAARFQVQKHSWDGLRSIIHGSRKYSGLIVNKAPHDFQFVQKTDESGPHSHRLYYLGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGLSNVLDDPKSAGVATFVIQEEFDRFTGYWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAEFQTDSQGKIVSTQEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFLDRPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRNVQPYVVYEEVTNVWINVHDIFYPFPQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGYDWSEPFSPGEDEFKCPIKEEIALTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVSYEAAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQHGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEYL", "length": 863 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BVG4-1", "protein_name": "Dipeptidyl peptidase 9", "gene_name": "Dpp9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCSGVSPVEQVAAGDMDDTAARFCVQKHSWDGLRSIIHGSRKSSGLIVSKAPHDFQFVQKPDESGPHSHRLYYLGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGSAGVLDNPKSAGVATFVIQEEFDRFTGCWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAELQTDHQGKIVSSCEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFLDRPQQRLQLVLLPPALFIPAVESEAQRQAAARAVPKNVQPFVIYEEVTNVWINVHDIFHPFPQAEGQQDFCFLRANECKTGFCHLYRVTVELKTKDYDWTEPLSPTEDEFKCPIKEEVALTSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVSYESAGEIVRLTTLGFSHSCSMSQSFDMFVSHYSSVSTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAANCPPDYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRKHPTVLFVYGGPQVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIEDQVEGLQYVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSIRCRESGEHYEVTLLHFLQEHL", "length": 862 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VC19-1", "protein_name": "Dipeptidyl peptidase 9", "gene_name": "Dmel\\CG3744", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MESRTQMNQSNQQQQQQRNRLPSSPSPPLSVVSLTGGPNANTTLMGLEHDAVPSSQLGRNNNNGGGHHRSHSITNAATTSLANLLDGFTARVSTAVSVAGGTNMLMDRSSQSAASTPGSTHSIASLTSMGSLGTTANALYSSIGSALNSITSPIQAAAAAATATTTEVVVAAASVITNHLSSPTSGTPPHGLDVDEGDDECDDCEEDEDDPVDNDGHIAAPTPNKSWAENKQVVQEIRKKMCNLSSMVPTNVQFRHLSDGRARCYFLGTPPQSWETTLLFADINLTQSEEQQLLVQRLEGIASDEWSPTMNAGSPTSSGHQPAFLFNSLPRPRLPWSPLLQQPIQSSGGSGGSGSASPYAREYQLLQERKRLSTWGITSYELHKPSGKLVFPCFNDLYQCLDTGYNSGLLFPTQLRTCPQWTALDPQICPQNSDMIAYISDCDLFVTHTLSGHEKRLTYTSTGRHSYVDDALSAGVPSYVMQEEFSRYQGFWWQPHSNDGIYRIVYEEVDESEVSVYTFPSSTAMHGRVDEYRFPRTGSPNAKSKLKLVQFVLNEALQVSEIAIKDLPYSLLAVFSWLEYIVRVGWTPDAKYVWVQGLDRKQQRLDVILIPLDNFCESYSSQVSTPTDSIGDHSWRSLYSRTITPLQVIYTERSDSWINVHDMLHFLDLTETSVTFLWASEETGFRHLYLVTASLLLSQANGQPDPGSVGAQPSFVDLSALQPRILNKVALTSGEWEVLARNLWVDKANKLVYFVGLRDTPLEKHLYVVSLERPEHIRLLTEPGYSYLVEFDDQCKLMLLVYCNIQRLPSCKVMRVNQTCSNGGVNGIQISLVGYLHEGGKPEPQYCPQIFSPQLPSGDIVYAMVFKPHNFELGVKYPTVLNVYGGPEVQTVNNTFKGKHQLRMHMLAAQGYCVICIDSRGSRHRGKRFESHIRGRMGQVELTDQVDALRSLSDQLGYIDMDRVAIHGWSYGGYLSLMGLVQYPKIFKVAIAGAPVTNWEYYDTGYTERYMDMPQNNEAGYSAGSVLEYVNSFPEEDKRLLLIHGLIDENVHFCHTSRLISALNKANKPYEVHLFPEERHSLRNLESNKNYETKLLSFLQNL", "length": 1102 }, "evidence": [ { "id": "Q9FNF6", "url": "https://omabrowser.org/oma/group/Q9FNF6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "dipeptidyl-peptidase activity", "id": "GO:0008239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008239", "evidence": [ { "database": "UniProtKB", "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNF6", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" }, { "id": "PF00930", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00930" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dipeptidylpeptidase IV N-terminal", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 458, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "Q9FNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNF6" }, { "id": "PF00326", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00326" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S9 prolyl oligopeptidase catalytic", "eco_id": "ECO_0000259", "start_pos": 546, "end_pos": 746, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 475 ], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FVR4-1", "uniprot_ac": "Q9FVR4", "uniprot_id": "Q9FVR4_ARATH", "mass": { "chemical_mass": 46393.0, "monoisotopic_mass": 46393.0 }, "refseq": {}, "gene_names": [ { "name": "F3C3.3", "type": "synonym", "evidence": [ { "id": "Q9FVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ] }, { "name": "F3C3_3", "type": "synonym", "evidence": [ { "id": "Q9FVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ] } ], "protein_names": [ { "name": "palmitoyl-protein hydrolase", "type": "recommended", "evidence": [ { "id": "Q9FVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4/entry#names_and_taxonomy" } ] }, { "name": "3.1.2.22", "type": "synonym", "evidence": [ { "id": "Q9FVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4", "locus": {} } ], "crossref": [ { "id": "AT1G32190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G32190", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "840111", "url": "https://www.ncbi.nlm.nih.gov/gene/840111", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G32190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QMCSFYY", "url": "https://omabrowser.org/oma/group/QMCSFYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A8MRN1", "url": "https://www.orthodb.org/?gene=A8MRN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FVR4", "url": "https://www.orthodb.org/?gene=Q9FVR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277:SF139", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277:SF139", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "19233", "url": "https://www.rhea-db.org/rhea/19233", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT1G32190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G32190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MRN1", "url": "https://www.uniprot.org/uniprotkb/A8MRN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MRN1-1", "url": "https://www.uniprot.org/uniprotkb/A8MRN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVR4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCMFSHLAAKFAFFPPSPPTYHLTKTPDGKLSAVSSASSSSSTFPSAGDPSLDVKVVKTRRGNKVTAFYLRNPNARLTLLYSHGNAADLGQLFDLFVQLKVNLRVNLMGYDYSGYGASTGKPSEYDTYADIEAAYECLQTDYGVGQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKFKFCCDIYSNVNKIKKVKCPVLVIHGTEDDVVNWLHGNRLWKMAKEPYEPLWIKGGGHCNLEIYPDYIRHLYRFIQDMENTTTKSRLKTIWQEIRRRDESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCGGGRRKEGERRGSTTLEKSEG", "length": 422, "header": "tr|Q9FVR4-1|Q9FVR4_ARATH Isoform 1 of palmitoyl-protein hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR4-1" }, "isoforms": [ { "isoform_ac": "A8MRN1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4/entry#A8MRN1-1", "sequence": { "sequence": "MEMLQIWDNSSISLFNSKSISESISWGMIIQAMELLLPSEYDTYADIEAAYECLQTDYGVGQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKFKFCCDIYSNVNKIKKVKCPVLVIHGTEDDVVNWLHGNRLWKMAKEPYEPLWIKGGGHCNLEIYPDYIRHLYRFIQDMENTTTKSRLKTIWQEIRRRDESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCGGGRRKEGERRGSTTLEKSEG", "length": 337, "header": "tr|A8MRN1-1|Q9FVR4_ARATH Computationally mapped isoform of palmitoyl-protein hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR4-1" }, "locus": { "chromosome": "1", "start_pos": 11592955, "end_pos": 11595982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32190.2", "url": "https://www.ensemblgenomes.org/id/AT1G32190.2" }, { "database": "Ensembl Peptide", "id": "AT1G32190.2", "url": "https://www.ensemblgenomes.org/id/AT1G32190.2" } ] } }, { "isoform_ac": "Q9FVR4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4/entry#Q9FVR4-1", "sequence": { "sequence": "MGCMFSHLAAKFAFFPPSPPTYHLTKTPDGKLSAVSSASSSSSTFPSAGDPSLDVKVVKTRRGNKVTAFYLRNPNARLTLLYSHGNAADLGQLFDLFVQLKVNLRVNLMGYDYSGYGASTGKPSEYDTYADIEAAYECLQTDYGVGQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKFKFCCDIYSNVNKIKKVKCPVLVIHGTEDDVVNWLHGNRLWKMAKEPYEPLWIKGGGHCNLEIYPDYIRHLYRFIQDMENTTTKSRLKTIWQEIRRRDESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCGGGRRKEGERRGSTTLEKSEG", "length": 422, "header": "tr|Q9FVR4-1|Q9FVR4_ARATH Isoform 1 of palmitoyl-protein hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR4-1" }, "locus": { "chromosome": "1", "start_pos": 11592927, "end_pos": 11596056, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32190.1", "url": "https://www.ensemblgenomes.org/id/AT1G32190.1" }, { "database": "Ensembl Peptide", "id": "AT1G32190.1", "url": "https://www.ensemblgenomes.org/id/AT1G32190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A8MRN1", "url": "https://www.uniprot.org/uniprotkb/A8MRN1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MRN1", "url": "https://www.uniprot.org/uniprotkb/A8MRN1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G32190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32190", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4D6K2Q0-1", "protein_name": "palmitoyl-protein hydrolase", "gene_name": "CG11935", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFSISELCCMFCCPPCPGPIAAKLAFQPPEPTYKLTPADDTNIRYNLQLFDRAEWQYSEREKSKVEAFFTRTSRGNLITCIYVRCSKNAKYTLLFSHGNAVDLGQMSSFYLTLGSQINCNIFGYDYSGYGMSGGKPSEKNLYADIEAAWQAMRTRFNISPETIILYGQSIGTVPTVDLASRHEVGAVILHSPLMSGLRVVFRNTKRTWFFDAFPSIDKVAKVKAPVLVIHGTDDEVIDFSHGIGIYERCPKTVEPFWVEGAGHNDVELHPHYYERLRKFLSVELVKXQLKNNVDGGVSDTTSGVISNSNPAAGSASLSSKHPNPAPAAGSETSKKNVDTNVKRIENDGL", "length": 349 }, "evidence": [ { "id": "Q9FVR4", "url": "https://omabrowser.org/oma/group/Q9FVR4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "E7FGL4-1", "protein_name": "palmitoyl-protein hydrolase", "gene_name": "abhd17ab", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGLSVSELCCLFCCPPCPSRIAAKLAFLPPEPTYALLPDLEAGPVPAGPTGTSGLRSRGGGGGGGSSVGGSSATGEGRWKLHLTERAEFQYSQRELDATEVFLTRSSRGNRVGCMYIRCAPSARFTVLFSHGNAVDLGQMSSFYIGLGTRINCNIFSYDYSGYGVSTGKPSEKNLYADIDAAWQALRSRYGISPENIILYGQSIGTVPTVDLASRYECAAVILHSPLTSGMRVAFPDTKKTYCFDAFPNIEKVSKITSPVLIIHGTEDEVIDFSHGLALYERCPKAVEPLWVEGAGHNDIELYTQYLERLRRFIGQELAVQHA", "length": 324 }, "evidence": [ { "id": "Q9FVR4", "url": "https://omabrowser.org/oma/group/Q9FVR4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "palmitoyl-(protein) hydrolase activity", "id": "GO:0008474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008474", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR4", "url": "https://www.uniprot.org/uniprotkb/Q9FVR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], 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"mass": { "chemical_mass": 24046.0, "monoisotopic_mass": 24046.0 }, "refseq": {}, "gene_names": [ { "name": "F25P12.86", "type": "synonym", "evidence": [ { "id": "Q9FXC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0" } ] }, { "name": "F25P12_86", "type": "synonym", "evidence": [ { "id": "Q9FXC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0" } ] } ], "protein_names": [ { "name": "Peptidase C15, pyroglutamyl peptidase I-like protein", "type": "synonym", "evidence": [ { "id": "Q9FXC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXC0", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0", "locus": {} } ], "crossref": [ { "id": "AT1G56700", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G56700", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00501", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00501", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "842126", "url": "https://www.ncbi.nlm.nih.gov/gene/842126", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G56700", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56700", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PGRFVCN", "url": "https://omabrowser.org/oma/group/PGRFVCN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A8MSE7", "url": "https://www.orthodb.org/?gene=A8MSE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FXC0", "url": "https://www.orthodb.org/?gene=Q9FXC0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23402", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23402", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23402:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23402:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01470", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01470", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G56700", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G56700", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MSE7", "url": "https://www.uniprot.org/uniprotkb/A8MSE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MSE7-1", "url": "https://www.uniprot.org/uniprotkb/A8MSE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXC0", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXC0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQGALASLYQLLQSAVNTKESESLTGKTIWVHFGVNSGATKFAIEQQAVNEATFRCPDELGWKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRFAEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLASICK", "length": 219, "header": "tr|Q9FXC0-1|Q9FXC0_ARATH Isoform 1 of Peptidase C15, pyroglutamyl peptidase I-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXC0-1" }, "isoforms": [ { "isoform_ac": "A8MSE7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0/entry#A8MSE7-1", "sequence": { "sequence": "MANNLKEYLAKNCVSKDVNLGSCTVLETAGQGALASLYQLLQSAVNTKESESLTGKTIWVHFGVNSGATKFAIEQQAVNEATFRCPDELGWKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRFAEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLASICK", "length": 190, "header": "tr|A8MSE7-1|Q9FXC0_ARATH Computationally mapped isoform of Peptidase C15, pyroglutamyl peptidase I-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXC0-1" }, "locus": { "chromosome": "1", "start_pos": 21256176, "end_pos": 21257973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56700.3", "url": "https://www.ensemblgenomes.org/id/AT1G56700.3" }, { "database": "Ensembl Peptide", "id": "AT1G56700.3", "url": "https://www.ensemblgenomes.org/id/AT1G56700.3" } ] } }, { "isoform_ac": "Q9FXC0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0/entry#Q9FXC0-1", "sequence": { "sequence": "MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQGALASLYQLLQSAVNTKESESLTGKTIWVHFGVNSGATKFAIEQQAVNEATFRCPDELGWKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRFAEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLASICK", "length": 219, "header": "tr|Q9FXC0-1|Q9FXC0_ARATH Isoform 1 of Peptidase C15, pyroglutamyl peptidase I-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXC0-1" }, "locus": { "chromosome": "1", "start_pos": 21256410, "end_pos": 21257973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56700.4", "url": "https://www.ensemblgenomes.org/id/AT1G56700.4" }, { "database": "Ensembl Peptide", "id": "AT1G56700.4", "url": "https://www.ensemblgenomes.org/id/AT1G56700.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 7, "start_aa": "Thr", "end_pos": 7, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr7", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A8MSE7", "url": "https://www.uniprot.org/uniprotkb/A8MSE7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MSE7", "url": "https://www.uniprot.org/uniprotkb/A8MSE7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G56700", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56700", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q55GV5-1", "protein_name": "Pyrrolidone-carboxylate peptidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKKKIILSGFGTFCGVSDNPSSQLMNEIKTYINGIPNKDELRFEIIDINVIKVSGNGVKDYLNQIETNYLKTSKDDIPILIHFGVSSSETNNRLERYGWNMADFRCDDEDMWKPQNEPIDSNDSSDKYETTLPINDLVEKLSNSNYKVTPSIDPGRFVCNYLYFLSLRLSKFYNTKSLFVHIPLFGVIDKETQLNFIIDLLNSISK", "length": 207 }, "evidence": [ { "id": "Q9FXC0", "url": "https://omabrowser.org/oma/group/Q9FXC0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyroglutamyl-peptidase activity", "id": "GO:0016920", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016920", "evidence": [ { "database": "UniProtKB", "id": "Q9FXC0", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0" } ], "pmid": "" }, { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "Q9FXC0", "url": "https://www.uniprot.org/uniprotkb/Q9FXC0" } ], "pmid": "" } ] }, { 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"expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LID7", "url": "https://www.uniprot.org/uniprotkb/Q9LID7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LID7", "locus": {} } ], "crossref": [ { "id": "AT3G13630", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G13630", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd11473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820567", "url": "https://www.ncbi.nlm.nih.gov/gene/820567", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G13630", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VENACTM", "url": "https://omabrowser.org/oma/group/VENACTM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "B3H518", "url": "https://www.orthodb.org/?gene=B3H518", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LID7", "url": "https://www.orthodb.org/?gene=Q9LID7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_187972", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187972", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13630", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H518", "url": "https://www.uniprot.org/uniprotkb/B3H518", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H518-1", "url": "https://www.uniprot.org/uniprotkb/B3H518-1", "database": "UniProtKB", "categories": 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"tr|B3H518-1|Q9LID7_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LID7-1" }, "locus": { "chromosome": "3", "start_pos": 4456954, "end_pos": 4458134, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13630.2", "url": "https://www.ensemblgenomes.org/id/AT3G13630.2" }, { "database": "Ensembl Peptide", "id": "AT3G13630.2", "url": "https://www.ensemblgenomes.org/id/AT3G13630.2" } ] } }, { "isoform_ac": "Q9LID7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LID7/entry#Q9LID7-1", "sequence": { "sequence": "MEGGAEDLSAEIVGLLETAYERSDSMDKIRNQLERMSETLAESVPHSKYAEAIVKGMLLAVRRRVNLNERLSIQETIDLVFDAYGPILIPYATSNTTQIQIIESVEKICLEPQSPFSPVFGIIIQTLSRHCVNVEAIVDWEKRRKAAREEGTLSQQEMTLLWNMEHTQIGPTGGILEGYEIGKGSQDARDMGL", "length": 193, "header": "tr|Q9LID7-1|Q9LID7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LID7-1" }, "locus": { "chromosome": "3", "start_pos": 4456954, "end_pos": 4458179, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13630.1", "url": "https://www.ensemblgenomes.org/id/AT3G13630.1" }, { "database": "Ensembl Peptide", "id": "AT3G13630.1", "url": "https://www.ensemblgenomes.org/id/AT3G13630.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 172, "start_aa": "Thr", "end_pos": 172, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of 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Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H518", "url": "https://www.uniprot.org/uniprotkb/B3H518" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H518", "url": "https://www.uniprot.org/uniprotkb/B3H518" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G13630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9LID7", "url": "https://www.uniprot.org/uniprotkb/Q9LID7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G73390", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G73390", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H6Z1", "url": "https://www.uniprot.org/uniprotkb/B3H6Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H6Z1-1", "url": "https://www.uniprot.org/uniprotkb/B3H6Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX34", "url": "https://www.uniprot.org/uniprotkb/Q9FX34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX34-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFNWVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRASIDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIPKETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASLRTKNTSNHI", "length": 419, "header": "tr|Q9FX34-1|Q9FX34_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FX34-1" }, "isoforms": [ { "isoform_ac": "B3H6Z1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX34/entry#B3H6Z1-1", "sequence": { "sequence": "MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFNWVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRASIDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSR", "length": 342, "header": "tr|B3H6Z1-1|Q9FX34_ARATH Computationally mapped isoform of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FX34-1" }, "locus": { "chromosome": "1", "start_pos": 27590810, "end_pos": 27595142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G73390.4", "url": "https://www.ensemblgenomes.org/id/AT1G73390.4" }, { "database": "Ensembl Peptide", "id": "AT1G73390.4", "url": "https://www.ensemblgenomes.org/id/AT1G73390.4" } ] } }, { "isoform_ac": "Q9FX34-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX34/entry#Q9FX34-1", "sequence": { "sequence": "MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFNWVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRASIDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIPKETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASLRTKNTSNHI", "length": 419, "header": "tr|Q9FX34-1|Q9FX34_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FX34-1" }, "locus": { "chromosome": "1", "start_pos": 27590810, "end_pos": 27595197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G73390.5", "url": "https://www.ensemblgenomes.org/id/AT1G73390.5" }, { "database": "Ensembl Peptide", "id": "AT1G73390.5", "url": "https://www.ensemblgenomes.org/id/AT1G73390.5" } ] } } ], "glycosylation": [], 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"https://www.uniprot.org/uniprotkb/B3H6Z1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FX34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX34" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, 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Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "B3H786", "url": "https://www.uniprot.org/uniprotkb/B3H786" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H786", "url": "https://www.uniprot.org/uniprotkb/B3H786" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G20100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G20100", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LHJ4-1", "uniprot_ac": "Q9LHJ4", "uniprot_id": "Q9LHJ4_ARATH", "mass": { "chemical_mass": 23868.0, "monoisotopic_mass": 23868.0 }, "refseq": { "ac": "NP_001327785", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327785" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9LHJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHJ4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001327785", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327785" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHJ4", "url": "https://www.uniprot.org/uniprotkb/Q9LHJ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LHJ4", "locus": {} } ], "crossref": [ { "id": "AT3G29300", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G29300", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822587", "url": "https://www.ncbi.nlm.nih.gov/gene/822587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G29300", "url": 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"MNSSSKVIMAATLVMVVSLVMVLSLVLVLLAELYCSLLLRRRRHNSLNLPITTTVSTAARTTTTLNQAISTTSNDNTSPSNINSSSPNPLYTGVIQTPTKTHYNHEPYLQASLDLIQETIVNDSVDNFIYISNPMYSNDATSKPTTPFETPESSPSRLETGESSSSSSGEEDNDHIIEVSTPTLTPMKDLPEKACSVSLKNVETSASESNSSGSPYTSPSW", "length": 221, "header": "tr|Q9LHJ4-1|Q9LHJ4_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LHJ4-1" }, "locus": { "chromosome": "3", "start_pos": 11246750, "end_pos": 11247873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29300.2", "url": "https://www.ensemblgenomes.org/id/AT3G29300.2" }, { "database": "Ensembl Peptide", "id": "AT3G29300.2", "url": "https://www.ensemblgenomes.org/id/AT3G29300.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld 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T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q1PEK3", "url": "https://www.uniprot.org/uniprotkb/Q1PEK3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"categories": [ "Enzyme and Pathway" ] }, { "id": "IVSTYLW", "url": "https://omabrowser.org/oma/group/IVSTYLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33133:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33133:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_564252", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564252", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G26650", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26650", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LQY7", "url": "https://www.uniprot.org/uniprotkb/Q9LQY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LQY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METETNQVLRKPELKSYSHKQFHSSNALEILRETVRILRYNLGALMLTTAVLICPVSALLLPNFLVDQSLVNKLTVKLLLVAKSSGLPLQPFVKHSCQKFAETAVSSAMCFPVFITVSLLSKAAVVYSVDCSYSREVVDISKFLVILQKIWRRVVFTYVWICILIVGCFTFFCVLLVAICSSFSVLGFSPDFNVYGAMLVGLAFSVVFANAIIICNTAIVISVLEDVSGLGALMRASDLIKGQIQVGLLMFLGSTLGLAFVEGLFDHRVKKVSYGDGSSRLWEGPLLVLMYSFVTLIDSMMSAVFYFSCRVYYSMEASRGETQPIMETVTVVDAE", "length": 335, "header": "tr|Q9LQY7-1|Q9LQY7_ARATH Isoform 1 of Son of sevenless protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LQY7-1" }, "isoforms": [ { "isoform_ac": "Q9LQY7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQY7/entry#Q9LQY7-1", "sequence": { "sequence": "METETNQVLRKPELKSYSHKQFHSSNALEILRETVRILRYNLGALMLTTAVLICPVSALLLPNFLVDQSLVNKLTVKLLLVAKSSGLPLQPFVKHSCQKFAETAVSSAMCFPVFITVSLLSKAAVVYSVDCSYSREVVDISKFLVILQKIWRRVVFTYVWICILIVGCFTFFCVLLVAICSSFSVLGFSPDFNVYGAMLVGLAFSVVFANAIIICNTAIVISVLEDVSGLGALMRASDLIKGQIQVGLLMFLGSTLGLAFVEGLFDHRVKKVSYGDGSSRLWEGPLLVLMYSFVTLIDSMMSAVFYFSCRVYYSMEASRGETQPIMETVTVVDAE", "length": 335, "header": "tr|Q9LQY7-1|Q9LQY7_ARATH Isoform 1 of Son of sevenless protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LQY7-1" }, "locus": { "chromosome": "1", "start_pos": 9210051, "end_pos": 9211588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26650.1", "url": "https://www.ensemblgenomes.org/id/AT1G26650.1" }, { "database": "Ensembl Peptide", "id": "AT1G26650.1", "url": "https://www.ensemblgenomes.org/id/AT1G26650.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant 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J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LQY7", "url": "https://www.uniprot.org/uniprotkb/Q9LQY7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LQY7", "url": "https://www.uniprot.org/uniprotkb/Q9LQY7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G26650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { 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40169.0 }, "refseq": { "ac": "NP_200133", "name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133" }, "gene_names": [ { "name": "SPCH", "type": "recommended", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ] }, { "name": "BHLH98", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ] }, { "name": "EN19", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ] }, { "name": "MFH8.15", "type": "synonym", "evidence": [ { "id": "NP_200133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133" }, { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ] }, { "name": "SPCH", "type": "synonym", "evidence": [ { "id": "NP_200133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133" } ] }, { "name": "SPEECHLESS", "type": "synonym", "evidence": [ { "id": "NP_200133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133" }, { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ] } ], "protein_names": [ { "name": "Transcription factor SPEECHLESS", "type": "recommended", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "AtbHLH98", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "Basic helix-loop-helix protein 98", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "Transcription factor EN 19", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "bHLH 98", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "bHLH transcription factor bHLH098", "type": "synonym", "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#names_and_taxonomy" } ] }, { "name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_200133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133" } ] } ], "function": [ { "annotation": "Transcription factor acting as an integration node for stomata and brassinosteroid (BR) signaling pathways to control stomatal initiation and development (PubMed:22466366, PubMed:28507175). Activates transcription when in the presence of SCRM/ICE1 (PubMed:28507175). Functions as a dimer with SCRM or SCRM2 during stomatal initiation (PubMed:18641265). Required for the initiation, the spacing and the formation of stomata, by promoting the first asymmetric cell divisions (PubMed:19008449, PubMed:25680231, PubMed:25843888). Together with FMA and MUTE, modulates the stomata formation. Involved in the regulation of growth reduction under osmotic stress (e.g. mannitol), associated with a quick decrease of meristemoid mother cells (MMCs) number lower stomatal index and density (PubMed:25381317).", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7#function" }, { "database": "PubMed", "id": "17183265", "url": "https://glygen.org/publication/PubMed/17183265" }, { "database": "PubMed", "id": "25381317", "url": "https://glygen.org/publication/PubMed/25381317" }, { "database": "PubMed", "id": "17183267", "url": "https://glygen.org/publication/PubMed/17183267" }, { "database": "PubMed", "id": "25843888", "url": "https://glygen.org/publication/PubMed/25843888" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" }, { "database": "PubMed", "id": "18641265", "url": "https://glygen.org/publication/PubMed/18641265" }, { "database": "PubMed", "id": "28507175", "url": "https://glygen.org/publication/PubMed/28507175" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] } ], "disease": [], "snv": [], "mutagenesis": [ { "start_pos": 104, "end_pos": 112, "sequence_org": "HVTVERNRR", "sequence_mut": "PVTVPRNRP", "comment": "Plants are fertile and have a normal growth, but they form few stomata, some of them clustered, in cotyledons and leaves, and lack stomata in hypocotyls.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "28507175", "url": "https://glygen.org/publication/PubMed/28507175" } ] }, { "start_pos": 111, "end_pos": 111, "sequence_org": "R", "sequence_mut": "W", "comment": "In spch-5; normal growth, but extremely low number of sometimes clustered stomata in leaves and stomata free hypocotyls due to decreased ability to initiate and amplify lineages, defects in asymmetric cell fate allocation, and misorientation of asymmetric division planes. These phenotypes are partly rescued by brassinosteroids (BRs) by rescuing the expression of a set of target genes.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "28507175", "url": "https://glygen.org/publication/PubMed/28507175" } ] }, { "start_pos": 171, "end_pos": 220, "sequence_org": "SPRVVPSPRPSPPVLSPRKPPLSPRINHHQIHHHLLLPPISPRTPQPTSP", "sequence_mut": "", "comment": "In delta-49; reduced MPK3/MPK6 mediated phosphorylation and excessive numbers of asymmetric cell divisions in leaves epidermis leading to the creation of cells with meristemoid morphology, but fails to produce stomata.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 171, "end_pos": 264, "sequence_org": "SPRVVPSPRPSPPVLSPRKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLASCSSLGDPPPYSPASSSSSPS", "sequence_mut": "", "comment": "In delta-93; impaired MPK3/MPK6 mediated phosphorylation and large clusters of stomata in leaves epidermis.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 186, "end_pos": 186, "sequence_org": "S", "sequence_mut": "A", "comment": "Strong reduction of CDKA-1-mediated phosphorylation. Unable to rescue stomatal defects in disrupted mutants. Triggers excess physically asymmetric divisions but not stomata formation.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" } ] }, { "start_pos": 186, "end_pos": 186, "sequence_org": "S", "sequence_mut": "D", "comment": "Phosphomimetic, presence of stomatal clusters and increased stomatal density, can complement stomatal production defects associated with inactive CDKA-1.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" } ] }, { "start_pos": 193, "end_pos": 193, "sequence_org": "S", "sequence_mut": "A", "comment": "Unable to rescue disruption phenotype. Ectopic stomata formation and increased accumulation; when associated with A-211, A-214, A-219 and A-255. Ectopic asymmetric cell divisions, but fails to produce stomata, and reduced repression by osmotic stress (e.g. mannitol); when associated with A-211, A-214 and A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 211, "end_pos": 211, "sequence_org": "S", "sequence_mut": "A", "comment": "Ectopic stomata formation and increased accumulation; when associated with A-193, A-214, A-219 and A-255. Ectopic asymmetric cell divisions, but fails to produce stomata, and reduced repression by osmotic stress (e.g. mannitol); when associated with A-193, A-214 and A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 214, "end_pos": 214, "sequence_org": "T", "sequence_mut": "A", "comment": "Ectopic stomata formation and increased accumulation; when associated with A-193, A-211, A-219 and A-255. Ectopic asymmetric cell divisions, but fails to produce stomata, and reduced repression by osmotic stress (e.g. mannitol); when associated with A-193, A-211 and A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 219, "end_pos": 219, "sequence_org": "S", "sequence_mut": "A", "comment": "Ectopic stomata formation and increased accumulation; when associated with A-193, A-211, A-214 and A-255. Ectopic asymmetric cell divisions, but fails to produce stomata, and reduced repression by osmotic stress (e.g. mannitol); when associated with A-193, A-211 and A-214.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 237, "end_pos": 267, "sequence_org": "RSYSSLASCSSLGDPPPYSPASSSSSPSVSS", "sequence_mut": "", "comment": "In delta-31; reduced MPK3/MPK6 mediated phosphorylation and excessive numbers of asymmetric cell divisions in leaves epidermis leading to the creation of cells with meristemoid morphology.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 255, "end_pos": 255, "sequence_org": "S", "sequence_mut": "A", "comment": "Ectopic stomata formation and increased accumulation; when associated with A-193, A-211, A-214 and A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "start_pos": 290, "end_pos": 290, "sequence_org": "V", "sequence_mut": "M", "comment": "In spch-2; reduced stomatal index.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "17183265", "url": "https://glygen.org/publication/PubMed/17183265" } ] }, { "start_pos": 358, "end_pos": 364, "sequence_org": "QIQQTFC", "sequence_mut": "", "comment": "In spch-1; no stomata.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "17183265", "url": "https://glygen.org/publication/PubMed/17183265" } ] }, { "start_pos": 38, "end_pos": 38, "sequence_org": "S", "sequence_mut": "A", "comment": "Extra divisions outside the stomatal cell lineage and reduced phosphorylation by ASK7; when associated with A-44.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" } ] }, { "start_pos": 44, "end_pos": 44, "sequence_org": "T", "sequence_mut": "A", "comment": "Extra divisions outside the stomatal cell lineage and reduced phosphorylation by ASK7; when associated with A-38.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" } ] }, { "start_pos": 65, "end_pos": 65, "sequence_org": "S", "sequence_mut": "A", "comment": "Extra divisions outside the stomatal cell lineage and reduced phosphorylation by ASK7.", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ] } ], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SPCH", "url": "https://www.uniprot.org/uniprotkb/Q700C7", "locus": { "chromosome": "CP002688.1", "start_pos": 21586219, "end_pos": 21589255, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT5G53210", "url": "https://www.ensemblgenomes.org/id/AT5G53210" } ] } } ], "crossref": [ { "id": "Q700C7", "url": "https://alphafold.ebi.ac.uk/entry/Q700C7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G53210", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G53210", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd11448", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11448", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "835402", "url": "https://www.ncbi.nlm.nih.gov/gene/835402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q700C7", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q700C7*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G53210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G53210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QTRMSHI", "url": "https://omabrowser.org/oma/group/QTRMSHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8BE01", "url": "https://www.orthodb.org/?gene=A0A1P8BE01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q700C7", "url": "https://www.orthodb.org/?gene=Q700C7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46684", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46684", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46684:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46684:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q700C7", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_200133", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200133", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G53210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G53210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BE01", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BE01-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q700C7-1", "url": "https://www.uniprot.org/uniprotkb/Q700C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQEIIPDFLEECEFVDTSLAGDDLFAILESLEGAGEISPTAASTPKDGTTSSKELVKDQDYENSSPKRKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLASCSSLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLSAEELAQQIQQTFC", "length": 364, "header": "sp|Q700C7-1|SPCH_ARATH Isoform 1 of Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=1 CANONICAL=Q700C7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BE01-1", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#A0A1P8BE01-1", "sequence": { "sequence": "MQEIIPDFLEECEFVDTSLAGDDLFAILESLEGAGEISPTAASTPKDGTTSSKELVKDQDYENSSPKRKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLASCSSLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKVRTNNHPN", "length": 351, "header": "tr|A0A1P8BE01-1|SPCH_ARATH Computationally mapped isoform of Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=1 CANONICAL=Q700C7-1" }, "locus": { "chromosome": "5", "start_pos": 21587218, "end_pos": 21589255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53210.2", "url": "https://www.ensemblgenomes.org/id/AT5G53210.2" }, { "database": "Ensembl Peptide", "id": "AT5G53210.2", "url": "https://www.ensemblgenomes.org/id/AT5G53210.2" } ] } }, { "isoform_ac": "Q700C7-1", "url": "https://www.uniprot.org/uniprotkb/Q700C7/entry#Q700C7-1", "sequence": { "sequence": "MQEIIPDFLEECEFVDTSLAGDDLFAILESLEGAGEISPTAASTPKDGTTSSKELVKDQDYENSSPKRKKQRLETRKEEDEEEEDGDGEAEEDNKQDGQQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLSPRINHHQIHHHLLLPPISPRTPQPTSPYRAIPPQLPLIPQPPLRSYSSLASCSSLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLSAEELAQQIQQTFC", "length": 364, "header": "sp|Q700C7-1|SPCH_ARATH Isoform 1 of Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=1 CANONICAL=Q700C7-1" }, "locus": { "chromosome": "5", "start_pos": 21586219, "end_pos": 21589255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53210.1", "url": "https://www.ensemblgenomes.org/id/AT5G53210.1" }, { "database": "Ensembl Peptide", "id": "AT5G53210.1", "url": "https://www.ensemblgenomes.org/id/AT5G53210.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 171, "end_pos": 171, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser171" }, { "start_pos": 177, "end_pos": 177, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7, MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ], "site_lbl": "Ser177" }, { "start_pos": 181, "end_pos": 181, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser181" }, { "start_pos": 186, "end_pos": 186, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDKA-1, ASK7, MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ], "site_lbl": "Ser186" }, { "start_pos": 193, "end_pos": 193, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PRO", "id": "Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ], "site_lbl": "Ser193" }, { "start_pos": 211, "end_pos": 211, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PRO", "id": "Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ], "site_lbl": "Ser211" }, { "start_pos": 214, "end_pos": 214, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ASK7, MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PRO", "id": "Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Thr214" }, { "start_pos": 219, "end_pos": 219, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7, MPK3 and MPK6", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PRO", "id": "Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser219" }, { "start_pos": 255, "end_pos": 255, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "PRO", "id": "Q700C7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ], "site_lbl": "Ser255" }, { "start_pos": 38, "end_pos": 38, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser38" }, { "start_pos": 40, "end_pos": 40, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Thr40" }, { "start_pos": 43, "end_pos": 43, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser43" }, { "start_pos": 44, "end_pos": 44, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Thr44" }, { "start_pos": 65, "end_pos": 65, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "IntAct", "id": "Q700C7", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q700C7*" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ], "site_lbl": "Ser65" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BE01", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE01" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.", "journal": "Mol. Biol. Evol.", "date": "2003", "authors": "Heim Marc A, Jakoby Marc, Werber Martin, Martin Cathie, Weisshaar Bernd, Bailey Paul C", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "12679534", "url": "https://glygen.org/publication/PubMed/12679534" } ] }, { "title": "The Arabidopsis basic/helix-loop-helix transcription factor family.", "journal": "Plant Cell", "date": "2003", "authors": "Toledo-Ortiz Gabriela, Huq Enamul, Quail Peter H", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "12897250", "url": "https://glygen.org/publication/PubMed/12897250" } ] }, { "title": "Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.", "journal": "Plant Cell", "date": "2003", "authors": "Bailey Paul C, Martin Cathie, Toledo-Ortiz Gabriela, Quail Peter H, Huq Enamul, Heim Marc A, Jakoby Marc, Werber Martin, Weisshaar Bernd", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "14600211", "url": "https://glygen.org/publication/PubMed/14600211" } ] }, { "title": "Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.", "journal": "Plant Physiol.", "date": "2004", "authors": "Gong Wei, Shen Yun-Ping, Ma Li-Geng, Pan Yi, Du Yun-Long, Wang Dong-Hui, Yang Jian-Yu, Hu Li-De, Liu Xin-Fang, Dong Chun-Xia, Ma Li, Chen Yan-Hui, Yang Xiao-Yuan, Gao Ying, Zhu Danmeng, Tan Xiaoli, Mu Jin-Ye, Zhang Da-Bing, Liu Yu-Le, Dinesh-Kumar S P, Li Yi, Wang Xi-Ping, Gu Hong-Ya, Qu Li-Jia, Bai Shu-Nong, Lu Ying-Tang, Li Jia-Yang, Zhao Jin-Dong, Zuo Jianru, Huang Hai, Deng Xing Wang, Zhu Yu-Xian", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "15208423", "url": "https://glygen.org/publication/PubMed/15208423" } ] }, { "title": "Transcription factor control of asymmetric cell divisions that establish the stomatal lineage.", "journal": "Nature", "date": "2007-02-01", "authors": "MacAlister Cora A, Ohashi-Ito Kyoko, Bergmann Dominique C", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "17183265", "url": "https://glygen.org/publication/PubMed/17183265" } ] }, { "title": "Termination of asymmetric cell division and differentiation of stomata.", "journal": "Nature", "date": "2007-02-01", "authors": "Pillitteri Lynn Jo, Sloan Daniel B, Bogenschutz Naomi L, Torii Keiko U", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "17183267", "url": "https://glygen.org/publication/PubMed/17183267" } ] }, { "title": "Breaking the silence: three bHLH proteins direct cell-fate decisions during stomatal development.", "journal": "Bioessays", "date": "2007", "authors": "Pillitteri Lynn Jo, Torii Keiko U", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "17691100", "url": "https://glygen.org/publication/PubMed/17691100" } ] }, { "title": "bHLH proteins know when to make a stoma.", "journal": "Trends Plant Sci.", "date": "2007", "authors": "Serna Laura", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "17928257", "url": "https://glygen.org/publication/PubMed/17928257" } ] }, { "title": "SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.", "journal": "The Plant cell", "date": "2008-07", "authors": "Kanaoka Masahiro M, Pillitteri Lynn Jo, Fujii Hiroaki, Yoshida Yuki, Bogenschutz Naomi L, Takabayashi Junji, Zhu Jian-Kang, Torii Keiko U", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "18641265", "url": "https://glygen.org/publication/PubMed/18641265" } ] }, { "title": "Arabidopsis stomatal initiation is controlled by MAPK-mediated regulation of the bHLH SPEECHLESS.", "journal": "Science (New York, N.Y.)", "date": "2008-11-14", "authors": "Lampard Gregory R, Macalister Cora A, Bergmann Dominique C", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] }, { "title": "Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development.", "journal": "J. Exp. Bot.", "date": "2012", "authors": "Tricker Penny J, Gibbings J George, Rodr\u00edguez L\u00f3pez Carlos M, Hadley Paul, Wilkinson Mike J", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "22442411", "url": "https://glygen.org/publication/PubMed/22442411" } ] }, { "title": "SPEECHLESS integrates brassinosteroid and stomata signalling pathways.", "journal": "Nature cell biology", "date": "2012-04-01", "authors": "Gudesblat Gustavo E, Schneider-Pizo\u0144 Joanna, Betti Camilla, Mayerhofer Juliane, Vanhoutte Isabelle, van Dongen Walter, Boeren Sjef, Zhiponova Miroslava, de Vries Sacco, Jonak Claudia, Russinova Eugenia", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" } ] }, { "title": "Arabidopsis reduces growth under osmotic stress by decreasing SPEECHLESS protein.", "journal": "Plant & cell physiology", "date": "2014-12", "authors": "Kumari Archana, Jewaria Pawan K, Bergmann Dominique C, Kakimoto Tatsuo", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "25381317", "url": "https://glygen.org/publication/PubMed/25381317" } ] }, { "title": "Phosphorylation of Serine 186 of bHLH Transcription Factor SPEECHLESS Promotes Stomatal Development in Arabidopsis.", "journal": "Molecular plant", "date": "2015-05", "authors": "Yang Ke-Zhen, Jiang Min, Wang Ming, Xue Shan, Zhu Ling-Ling, Wang Hong-Zhe, Zou Jun-Jie, Lee Eun-Kyoung, Sack Fred, Le Jie", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "iPTMnet", "id": "Q700C7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" } ] }, { "title": "The BASL polarity protein controls a MAPK signaling feedback loop in asymmetric cell division.", "journal": "Developmental cell", "date": "2015-04-20", "authors": "Zhang Ying, Wang Pengcheng, Shao Wanchen, Zhu Jian-Kang, Dong Juan", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "25843888", "url": "https://glygen.org/publication/PubMed/25843888" } ] }, { "title": "Phosphorylation of the polarity protein BASL differentiates asymmetric cell fate through MAPKs and SPCH.", "journal": "Curr. Biol.", "date": "2016", "authors": "Zhang Ying, Guo Xiaoyu, Dong Juan", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "27746029", "url": "https://glygen.org/publication/PubMed/27746029" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BE01", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BE01" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.", "journal": "Plant physiology", "date": "2017-06", "authors": "de Marcos Alberto, Houbaert Anaxi, Trivi\u00f1o Magdalena, Delgado Dolores, Mart\u00edn-Trillo Mar, Russinova Eugenia, Fenoll Carmen, Mena Monta\u00f1a", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "28507175", "url": "https://glygen.org/publication/PubMed/28507175" } ] }, { "title": "POLAR-guided signalling complex assembly and localization drive asymmetric cell division.", "journal": "Nature", "date": "2018-11", "authors": "Houbaert Anaxi, Zhang Cheng, Tiwari Manish, Wang Kun, de Marcos Serrano Alberto, Savatin Daniel V, Urs Mounashree J, Zhiponova Miroslava K, Gudesblat Gustavo E, Vanhoutte Isabelle, Eeckhout Dominique, Boeren Sjef, Karimi Mansour, Betti Camilla, Jacobs Thomas, Fenoll Carmen, Mena Monta\u00f1a, de Vries Sacco, De Jaeger Geert, Russinova Eugenia", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "30429609", "url": "https://glygen.org/publication/PubMed/30429609" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones.", "journal": "DNA Res.", "date": "1998", "authors": "Kotani H, Nakamura Y, Sato S, Asamizu E, Kaneko T, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "reference": [ { "type": "PubMed", "id": "9734815", "url": "https://glygen.org/publication/PubMed/9734815" } ] } ], "pathway": [ { "id": "ath:AT5G53210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G53210", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity", "id": "GO:0001216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001216", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "response to osmotic stress", "id": "GO:0006970", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006970", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "regulation of response to osmotic stress", "id": "GO:0047484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047484", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "response to low humidity", "id": "GO:0090547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090547", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "guard cell differentiation", "id": "GO:0010052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010052", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "stomatal complex development", "id": "GO:0010374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010374", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" }, { "name": "regulation of stomatal complex development", "id": "GO:2000038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000038", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [ { "annotation": "Phosphorylated by ASK7/BIN2 and ASK3/SK12; this post-translational modification inhibits activity and limit epidermal cell proliferation (PubMed:22466366, PubMed:30429609). Phosphorylation by MPK3 and MPK6 leads to the inhibition of stomatal fate and to degradation (PubMed:19008449, PubMed:25843888). Stabilized by CDKA-1-mediated phosphorylation at Ser-186 which promotes stomatal development (PubMed:25680231).", "evidence": [ { "database": "UniProtKB", "id": "Q700C7", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "database": "PubMed", "id": "25843888", "url": "https://glygen.org/publication/PubMed/25843888" }, { "database": "PubMed", "id": "30429609", "url": "https://glygen.org/publication/PubMed/30429609" }, { "database": "PubMed", "id": "22466366", "url": "https://glygen.org/publication/PubMed/22466366" }, { "database": "PubMed", "id": "25680231", "url": "https://glygen.org/publication/PubMed/25680231" }, { "database": "PubMed", "id": "19008449", "url": "https://glygen.org/publication/PubMed/19008449" } ] } ], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q700C7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q700C7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q700C7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q700C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q700C7" }, { "id": "PRU00981", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00981" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "bHLH", "eco_id": "ECO_0000255", "start_pos": 99, "end_pos": 150, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 40 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 38, 40, 43, 44, 65, 171, 177, 181, 186, 193, 211, 214, 219, 255 ], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 14 }, { "field": "total_sites", "count": 14 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LIM7-1", "uniprot_ac": "Q9LIM7", "uniprot_id": "Q9LIM7_ARATH", "mass": { "chemical_mass": 84415.0, "monoisotopic_mass": 84415.0 }, "refseq": { "ac": "NP_189279", "name": "Transducin family protein / WD-40 repeat family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189279" }, "gene_names": [], "protein_names": [ { "name": "Transducin family protein / WD-40 repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_189279", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189279" }, { "id": "Q9LIM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LIM7", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7", "locus": {} } ], "crossref": [ { "id": "AT3G26480", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G26480", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822253", "url": "https://www.ncbi.nlm.nih.gov/gene/822253", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G26480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCTAFNW", "url": "https://omabrowser.org/oma/group/SCTAFNW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45176:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45176:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23869", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23869", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189279", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189279", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26480", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LNC9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIM7", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIM7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSAPKLLKIFDTHLPIHSLVMIPAQVSHSVIAYVSVEDYSSVSKDLFGQIRRYDLTQDPLHSGDTLKEMEEPKPIVLSPSGEFFGVCHNCSIHIWNVASEHLMPKETTLHHTELITVFAFHPNQRILAAGDVTGRVLIWKDNGIGEFTSVKTEDDTESCTTFNWHSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKKQLLPKIGSPLLYFIFSSDSTLSSVICADNQIHLLKMPSMEILRTISGIKPPTPERHGFICYVKTRDICLTRTVSIDRSSGIAAFCTANHRVQLYNLLSDHDISEVQICDHHPDDDDQVRVLVTAVALSRNGSVMTTAEARFAASNFSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNPARSMAVSISSAGDFKIWVCSSDKNLTPEDSNWICHGVGSYKRTPITAAVFSGDGSCLALAAKTVITIWHPLKNELLYVVGKANAPIMELSFTGGGFLIAASHGSTPHLSVWDLMTFCLSWSYRLYIEAIATEVDSPYFAVLTWLPESDRLVKSNEQIFRGKDGAILLFDGSGPKPVAIWTVMKARGGTLSFVEDGKKSQPLLAYVNRSHEYVLFDPYSDEKLETSAIDYEVFLAAISKKKKRSRKKALMSEKPWETMFCGSTLNFPPFPDLCASFFSSRMQKEVCERADRQPERHSS", "length": 764, "header": "tr|Q9LIM7-1|Q9LIM7_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIM7-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LNC9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7/entry#A0A1I9LNC9-1", "sequence": { "sequence": "MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSAPKLLKIFDTHLPIHSLVMIPAQVSHSVIAYVSVEDYSSVSKDLFGQIRRYDLTQDPLHSGDTLKEMEEPKPIVLSPSGEFFGVCHNCSIHIWNVASEHLMPKETTLHHTELITVFAFHPNQRILAAGDVTGRVLIWKDNGIGEFTSVKTEDDTESCTTFNWHSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKKQLLPKIGSPLLYFIFSSDSTLSSVICADNQIHLLKMPSMEILRTISGIKPPTPERHGFICYVKTRDICLTRTVSIDRSSGIAAFCTANHRVQLYNLLSDHDISEVQICDHHPDDDDQVRVLVTAVALSRNGSVMTTAEARFAASNFSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNPARSMAVSISSAGDFKIWVCSSDKNLTPEDSNWICHGVGSYKRTPITAAVFSGDGSCLALAAKTVITIWHPLKNELLYVVGKANAPIMELSFTGGGFLIAASHGSTPHLSVWDLMTFCLSWSYRLYIEAIATEVDSPYFAVLTWLPESDRLVKSNEQIFRGKDGAILLFDGSGPKPVAIWTVMKVYTLRKD", "length": 657, "header": "tr|A0A1I9LNC9-1|Q9LIM7_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIM7-1" }, "locus": { "chromosome": "3", "start_pos": 9687669, "end_pos": 9690956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26480.2", "url": "https://www.ensemblgenomes.org/id/AT3G26480.2" }, { "database": "Ensembl Peptide", "id": "AT3G26480.2", "url": "https://www.ensemblgenomes.org/id/AT3G26480.2" } ] } }, { "isoform_ac": "Q9LIM7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7/entry#Q9LIM7-1", "sequence": { "sequence": "MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSAPKLLKIFDTHLPIHSLVMIPAQVSHSVIAYVSVEDYSSVSKDLFGQIRRYDLTQDPLHSGDTLKEMEEPKPIVLSPSGEFFGVCHNCSIHIWNVASEHLMPKETTLHHTELITVFAFHPNQRILAAGDVTGRVLIWKDNGIGEFTSVKTEDDTESCTTFNWHSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKKQLLPKIGSPLLYFIFSSDSTLSSVICADNQIHLLKMPSMEILRTISGIKPPTPERHGFICYVKTRDICLTRTVSIDRSSGIAAFCTANHRVQLYNLLSDHDISEVQICDHHPDDDDQVRVLVTAVALSRNGSVMTTAEARFAASNFSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNPARSMAVSISSAGDFKIWVCSSDKNLTPEDSNWICHGVGSYKRTPITAAVFSGDGSCLALAAKTVITIWHPLKNELLYVVGKANAPIMELSFTGGGFLIAASHGSTPHLSVWDLMTFCLSWSYRLYIEAIATEVDSPYFAVLTWLPESDRLVKSNEQIFRGKDGAILLFDGSGPKPVAIWTVMKARGGTLSFVEDGKKSQPLLAYVNRSHEYVLFDPYSDEKLETSAIDYEVFLAAISKKKKRSRKKALMSEKPWETMFCGSTLNFPPFPDLCASFFSSRMQKEVCERADRQPERHSS", "length": 764, "header": "tr|Q9LIM7-1|Q9LIM7_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIM7-1" }, "locus": { "chromosome": "3", "start_pos": 9687273, "end_pos": 9690966, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26480.1", "url": "https://www.ensemblgenomes.org/id/AT3G26480.1" }, { "database": "Ensembl Peptide", "id": "AT3G26480.1", "url": "https://www.ensemblgenomes.org/id/AT3G26480.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 229, "end_pos": 229, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM7" } ], "site_lbl": "Ser229" }, { "start_pos": 403, "end_pos": 403, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM7" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr403" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LNC9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM7" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LNC9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26480", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q55EH5-1", "protein_name": "WD40 repeat-containing protein", "gene_name": "wdr75", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVVAKSTTTATTTPTTKVVPSEKKSKGNVATTTSKVVPSEKKEKSSTKSSSTKVTTITPTPTPTLTPTPTPTSTPKPEPIIEEKPYTRPVSTLPEEKINETEWFNMKIKSGGSFTKNSPLLIDSNNLLLSNNNTIKIYNPITGGLKSETSLESNDDTITHITSTYKNSKMTIYLSTEMGKFYTFDLKNKSIEPLSNKIYNKGIVKFVVSPNEKNQIYFINNDGDLCEYNEKVNFQPIKINELLKNLQFISISNNGKFLVTGTKSFIQVLNLSTTTIQPSKYYKSEYQITSFSILPKSNNISVNNNNSNSNNSNNNEIIISFGTTLGRLNFINYNSENGQWNFNSYNHWHSTPLISSFYNYDGTMLFTGGYENTLAIWTVSNMRRKVFPRLGGAILHINCDPASQLIAITLSNNKVQIINISDYKSCSIITGLQDNKNSINNNNNNNNNNNNNNNNNNNNNNNNKNKITSFIEPISNNLIFSGQKNGIVQFYNIKKDRVEREIIVSPPRNTDISTKKSKGQNLKNGFDANKLSLEQSLVEPLAFHPSKPLFCSFESFSSVDKIESGVVLKDQILKFWETSNDNNCKCVFSITSPHSTNILSMSFHPTKNLLLTTSEKDFKLWRKQSMEAIDGTANNNNNNNNKTNIKSYWTCIYDGSYRGLVCSASAFSKDGSIFAVACDHLVTLWDSESMLPLDILSFSSCHIANELSFLNDNELLVSYKENGAIVWDIKKKSPVKVYTFPIKPISVCDEYYSLCPSTSRDRLMIFSSTSHQLLFTTQVPIPKSQVIEQVLFSKDQQSYDCILCITNETLVYGYSTFKDTNKIIPTTTTTTTTNTTNTTNTTTVNKRQKIEKPTTSPSTTTTTTTTTTDNNTSKDSLYIGNEIFTQLPSTQEMFGAASHIIPSVQNIYQKYMDSILVNSSNLVNSTTTKKEQDTINNVDTEIKNNNNIEKEENNKKKQSSQQLNKFSSMKNFFDNLEEPIEETTTGATIASSAATKETKTNSTSTSSVKKRKGSE", "length": 1015 }, "evidence": [ { "id": "Q9LIM7", "url": "https://omabrowser.org/oma/group/Q9LIM7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "Q9LIM7", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LIM7", "url": "https://www.uniprot.org/uniprotkb/Q9LIM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "Q9LIM7", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF23769" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WD repeat-containing protein 75 second beta-propeller", "eco_id": "ECO_0000259", "start_pos": 370, "end_pos": 617, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 229, 403 ], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 253, "end_pos": 255 }, { "start_pos": 410, "end_pos": 412 }, { "start_pos": 425, "end_pos": 427 }, { "start_pos": 491, "end_pos": 493 }, { "start_pos": 673, "end_pos": 675 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LJF8-1", "uniprot_ac": "Q9LJF8", "uniprot_id": "FBL47_ARATH", "mass": { "chemical_mass": 34623.0, "monoisotopic_mass": 34623.0 }, "refseq": { "ac": "NP_001154649", "name": "F-box/RNI-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154649" }, "gene_names": [ { "name": "MQP17.2", "type": "synonym", "evidence": [ { "id": "Q9LJF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8" } ] } ], "protein_names": [ { "name": "F-box/LRR-repeat protein At3g26922", "type": "recommended", "evidence": [ { "id": "Q9LJF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8/entry#names_and_taxonomy" } ] }, { "name": "F-box/RNI-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001154649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154649" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LJF8", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8", "locus": {} } ], "crossref": [ { "id": "Q9LJF8", "url": "https://alphafold.ebi.ac.uk/entry/Q9LJF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G26922", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G26922", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "7922367", "url": "https://www.ncbi.nlm.nih.gov/gene/7922367", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G26922", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26922", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEDMISH", "url": "https://omabrowser.org/oma/group/NEDMISH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LJF8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LJF8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001154649", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154649", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26922", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26922", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LNW1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNW2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LJF8", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LJF8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRCLRNGNGVNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYSEIVCRLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESVKGSFIFPTGLYNCETLESLTLRSWVLVDVPSPACLKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIMNVSKIINEKLLETLTSVKRLSLALSPLELKFSCNNYSGHLLL", "length": 306, "header": "sp|Q9LJF8-1|FBL47_ARATH Isoform 1 of F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9LJF8-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LNW1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8/entry#A0A1I9LNW1-1", "sequence": { "sequence": "MLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYSEIVCRLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESVKGSFIFPTGLYNCETLESLTLRSWVLVDVPSPACLKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIMNVSKIINEKLLETLTSVKRLSLALSPLELKFSCNNYSGHLLL", "length": 277, "header": "tr|A0A1I9LNW1-1|FBL47_ARATH Computationally mapped isoform of F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LJF8-1" }, "locus": { "chromosome": "3", "start_pos": 9922918, "end_pos": 9924660, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26922.5", "url": "https://www.ensemblgenomes.org/id/AT3G26922.5" }, { "database": "Ensembl Peptide", "id": "AT3G26922.5", "url": "https://www.ensemblgenomes.org/id/AT3G26922.5" } ] } }, { "isoform_ac": "A0A1I9LNW2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8/entry#A0A1I9LNW2-1", "sequence": { "sequence": "MKRCLRNGNGVNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESVKGSFIFPTGLYNCETLESLTLRSWVLVDVPSPACLKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIMNVSKIINEKLLETLTSVKRLSLALSPLELKFSCNNYSGHLLL", "length": 281, "header": "tr|A0A1I9LNW2-1|FBL47_ARATH Computationally mapped isoform of F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LJF8-1" }, "locus": { "chromosome": "3", "start_pos": 9922723, "end_pos": 9924672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26922.4", "url": "https://www.ensemblgenomes.org/id/AT3G26922.4" }, { "database": "Ensembl Peptide", "id": "AT3G26922.4", "url": "https://www.ensemblgenomes.org/id/AT3G26922.4" } ] } }, { "isoform_ac": "Q9LJF8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8/entry#Q9LJF8-1", "sequence": { "sequence": "MKRCLRNGNGVNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYSEIVCRLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESVKGSFIFPTGLYNCETLESLTLRSWVLVDVPSPACLKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIMNVSKIINEKLLETLTSVKRLSLALSPLELKFSCNNYSGHLLL", "length": 306, "header": "sp|Q9LJF8-1|FBL47_ARATH Isoform 1 of F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9LJF8-1" }, "locus": { "chromosome": "3", "start_pos": 9922719, "end_pos": 9924725, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26922.2", "url": "https://www.ensemblgenomes.org/id/AT3G26922.2" }, { "database": "Ensembl Peptide", "id": "AT3G26922.2", "url": "https://www.ensemblgenomes.org/id/AT3G26922.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 277, "end_pos": 277, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJF8" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr277" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LJF8", "url": "https://www.uniprot.org/uniprotkb/Q9LJF8" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LNW1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNW1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LJF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJF8" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of 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"ath:AT3G29375", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR21596", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21596", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21596:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21596:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566849", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566849", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29375", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29375", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LPQ7", "url": 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"MSPPFPKSWETKKQKTKVVSWFPCMYLLGLLLGWAEMLSPSINPTSSATPSFEFGTVPSSPSTAPSTSLLFGSSPSIFGATGSSPSSLPSSASTTTHATSSVTTTQPSLGVASSSGTAIGSPNMPSEITEEIVKEIILVEGNNESQEHKWRSMKQENEELKKRLRVMKEELEDKDSELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKASKRRLTGNDTEVYAEWEENLRDPHWQPFKRVETGNIVKEVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRVATLREVIAHMTHEIKTLKRKKNLKHRK", "length": 355, "header": "tr|Q9LIA7-1|Q9LIA7_ARATH Isoform 1 of XH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIA7-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LPQ7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7/entry#A0A1I9LPQ7-1", "sequence": { "sequence": "MPSEITEEIVKEIILVEGNNESQEHKWRSMKQENEELKKRLRVMKEELEDKDSELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKASKRRLTGNDTEVYAEWEENLRDPHWQPFKRVETGNIVKEVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRVATLREVIAHMTHEIKTLKRKKNLKHRK", "length": 232, "header": "tr|A0A1I9LPQ7-1|Q9LIA7_ARATH Computationally mapped isoform of XH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIA7-1" }, "locus": { "chromosome": "3", "start_pos": 11280319, "end_pos": 11282158, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29375.3", "url": "https://www.ensemblgenomes.org/id/AT3G29375.3" }, { "database": "Ensembl Peptide", "id": "AT3G29375.3", "url": "https://www.ensemblgenomes.org/id/AT3G29375.3" } ] } }, { "isoform_ac": "F4J318-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7/entry#F4J318-1", "sequence": { "sequence": "MPSEITEEIVKEIILVEGNNESQEHKWRSMKQENEELKKRLRVMKEELEDKDSELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKASKRRLTGNDTEVYAEWEENLRDPHWQPFKRVETGNIVKVCYLCHRDSFSSSISHLISLVSGEW", "length": 176, "header": "tr|F4J318-1|Q9LIA7_ARATH Computationally mapped isoform of XH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIA7-1" }, "locus": { "chromosome": "3", "start_pos": 11280325, "end_pos": 11281894, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29375.2", "url": "https://www.ensemblgenomes.org/id/AT3G29375.2" }, { "database": "Ensembl Peptide", "id": "AT3G29375.2", "url": "https://www.ensemblgenomes.org/id/AT3G29375.2" } ] } }, { "isoform_ac": "Q9LIA7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7/entry#Q9LIA7-1", "sequence": { "sequence": "MSPPFPKSWETKKQKTKVVSWFPCMYLLGLLLGWAEMLSPSINPTSSATPSFEFGTVPSSPSTAPSTSLLFGSSPSIFGATGSSPSSLPSSASTTTHATSSVTTTQPSLGVASSSGTAIGSPNMPSEITEEIVKEIILVEGNNESQEHKWRSMKQENEELKKRLRVMKEELEDKDSELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKASKRRLTGNDTEVYAEWEENLRDPHWQPFKRVETGNIVKEVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRVATLREVIAHMTHEIKTLKRKKNLKHRK", "length": 355, "header": "tr|Q9LIA7-1|Q9LIA7_ARATH Isoform 1 of XH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIA7-1" }, "locus": { "chromosome": "3", "start_pos": 11280151, "end_pos": 11281894, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29375.1", "url": "https://www.ensemblgenomes.org/id/AT3G29375.1" }, { "database": "Ensembl Peptide", "id": "AT3G29375.1", "url": "https://www.ensemblgenomes.org/id/AT3G29375.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Thr", "end_pos": 49, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr49", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPQ7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPQ7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29375", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "gene silencing by siRNA-directed DNA methylation", "id": "GO:0080188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080188", "evidence": [ { "database": "UniProtKB", "id": "Q9LIA7", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LIA7", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LIA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIA7" }, { "id": "PF03469", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03469" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Factor of DNA methylation 1-5/IDN2", "eco_id": "ECO_0000259", "start_pos": 223, "end_pos": 348, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 49 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 244, "end_pos": 246 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LH93-1", "uniprot_ac": "Q9LH93", "uniprot_id": "Q9LH93_ARATH", "mass": { "chemical_mass": 47872.0, "monoisotopic_mass": 47872.0 }, "refseq": { "ac": "NP_189523", "name": "mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189523" }, "gene_names": [], "protein_names": [ { "name": "Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "Q9LH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH93/entry#names_and_taxonomy" } ] }, { "name": "mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "NP_189523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189523" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH93", "url": "https://www.uniprot.org/uniprotkb/Q9LH93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LH93", "locus": {} } ], "crossref": [ { "id": "AT3G28810", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G28810", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822513", "url": "https://www.ncbi.nlm.nih.gov/gene/822513", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28810", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSMIKGA", "url": "https://omabrowser.org/oma/group/FSMIKGA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189523", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189523", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LPV7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LPV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH93", "url": "https://www.uniprot.org/uniprotkb/Q9LH93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH93-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARVQLFLCFTILFASVTLLDIVSAHLKLKPTLPQIEPPQTLKDVEPYTVKVVIVFVSDLEKECPKTNKFKAFFEKLRAFAKYVCPIKRKDQVDYDRDMKAKAGGLFQVISSFAIGKIKKEIQEDKMEVINTFKFMRFLATKIVGSRKKEESEESMKLTAEQQKEIKEGILRWETIITRITNTMVSSTTNSASSNEESSVGKEASSENSKSSGKESESSAKGESETSAKGESKTSAKGESETSSSKSAGGSSTSATKEESSASQSSGVTVTQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQLKGTMIAPPKERKGLFSRIKSAAGKLSGAMGVMRSRIGSKSAEVKKSMETYQEQVMKTLQELDTIHSQIVSQNQGKKEGSLTCTPAQQTQIKTTITKWEQVTTQFVETAIQSETKSSSTTSSSVGKMNTN", "length": 434, "header": "tr|Q9LH93-1|Q9LH93_ARATH Isoform 1 of Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH93-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LPV7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH93/entry#A0A1I9LPV7-1", "sequence": { "sequence": "MARVQLFLCFTILFASVTLLDIVSAHLKLKPTLPQIEPPQTLKDVEPYTVKVVIVFVSDLEKECPKTNKFKAFFEKLRAFAKYVCPIKRKDQVDYDRDMKAKAGGLFQVISSFAIGKIKKEIQEDKMEVINTFKFMRFLATKIVGSRKKEESEESMKLTAEQQKEIKEGILRWETIITRITNTMVSSTTNSASSNEESSVGKEASSENSKSSGKESESSAKGESETSSSKSAGGSSTSATKEESSASQSSGVTVTQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQLKGTMIAPPKERKGLFSRIKSAAGKLSGAMGVMRSRIGSKSAEVKKSMETYQEQVMKTLQELDTIHSQIVSQNQGKKEGSLTCTPAQQTQIKTTITKWEQVTTQFVETAIQSETKSSSTTSSSVGKMNTN", "length": 418, "header": "tr|A0A1I9LPV7-1|Q9LH93_ARATH Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH93-1" }, "locus": { "chromosome": "3", "start_pos": 10822340, "end_pos": 10823968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28810.2", "url": "https://www.ensemblgenomes.org/id/AT3G28810.2" }, { "database": "Ensembl Peptide", "id": "AT3G28810.2", "url": "https://www.ensemblgenomes.org/id/AT3G28810.2" } ] } }, { "isoform_ac": "Q9LH93-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH93/entry#Q9LH93-1", "sequence": { "sequence": "MARVQLFLCFTILFASVTLLDIVSAHLKLKPTLPQIEPPQTLKDVEPYTVKVVIVFVSDLEKECPKTNKFKAFFEKLRAFAKYVCPIKRKDQVDYDRDMKAKAGGLFQVISSFAIGKIKKEIQEDKMEVINTFKFMRFLATKIVGSRKKEESEESMKLTAEQQKEIKEGILRWETIITRITNTMVSSTTNSASSNEESSVGKEASSENSKSSGKESESSAKGESETSAKGESKTSAKGESETSSSKSAGGSSTSATKEESSASQSSGVTVTQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQLKGTMIAPPKERKGLFSRIKSAAGKLSGAMGVMRSRIGSKSAEVKKSMETYQEQVMKTLQELDTIHSQIVSQNQGKKEGSLTCTPAQQTQIKTTITKWEQVTTQFVETAIQSETKSSSTTSSSVGKMNTN", "length": 434, "header": "tr|Q9LH93-1|Q9LH93_ARATH Isoform 1 of Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH93-1" }, "locus": { "chromosome": "3", "start_pos": 10822181, "end_pos": 10823985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28810.1", "url": "https://www.ensemblgenomes.org/id/AT3G28810.1" }, { "database": "Ensembl Peptide", "id": "AT3G28810.1", "url": "https://www.ensemblgenomes.org/id/AT3G28810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPV7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPV7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPV7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPV7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LH93", "url": "https://www.uniprot.org/uniprotkb/Q9LH93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH93" }, { "id": "PF06746", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1216", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 201, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LCZ9-1", "uniprot_ac": "Q9LCZ9", "uniprot_id": "Q9LCZ9_ARATH", "mass": { "chemical_mass": 19110.0, "monoisotopic_mass": 19110.0 }, "refseq": { "ac": "NP_190972", "name": "PAR1 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190972" }, "gene_names": [], "protein_names": [ { "name": "PAR1 protein", "type": "synonym", "evidence": [ { "id": "NP_190972", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190972" }, { "id": "Q9LCZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LCZ9", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9", "locus": {} } ], "crossref": [ { "id": "AT3G54040", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G54040", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824571", "url": "https://www.ncbi.nlm.nih.gov/gene/824571", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G54040", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G54040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR33649", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33649", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33649:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33649:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06521", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06521", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190972", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190972", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G54040", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G54040", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQ94", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQ94-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LCZ9", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LCZ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFSSLKLPIFLILSSLLHAAIGENIVCENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNILDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSGAAPGPVSEIAPGPTSEEVSSPALAPASM", "length": 183, "header": "tr|Q9LCZ9-1|Q9LCZ9_ARATH Isoform 1 of PAR1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LCZ9-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQ94-1", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9/entry#A0A1I9LQ94-1", "sequence": { "sequence": "MYTHTPQHPFNIYASYFHVLSILHFSLKTSRGSKSLTPTNQEKETEEKREKKNAETMSFSSLKLPIFLILSSLLHAAIGENIVCENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNILDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSGAAPGPVSEIAPGPTSEEVSSPALAPASM", "length": 239, "header": "tr|A0A1I9LQ94-1|Q9LCZ9_ARATH Computationally mapped isoform of PAR1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LCZ9-1" }, "locus": { "chromosome": "3", "start_pos": 20013758, "end_pos": 20015653, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G54040.2", "url": "https://www.ensemblgenomes.org/id/AT3G54040.2" }, { "database": "Ensembl Peptide", "id": "AT3G54040.2", "url": "https://www.ensemblgenomes.org/id/AT3G54040.2" } ] } }, { "isoform_ac": "Q9LCZ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9/entry#Q9LCZ9-1", "sequence": { "sequence": "MSFSSLKLPIFLILSSLLHAAIGENIVCENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNILDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSGAAPGPVSEIAPGPTSEEVSSPALAPASM", "length": 183, "header": "tr|Q9LCZ9-1|Q9LCZ9_ARATH Isoform 1 of PAR1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LCZ9-1" }, "locus": { "chromosome": "3", "start_pos": 20013726, "end_pos": 20015451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G54040.1", "url": "https://www.ensemblgenomes.org/id/AT3G54040.1" }, { "database": "Ensembl Peptide", "id": "AT3G54040.1", "url": "https://www.ensemblgenomes.org/id/AT3G54040.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 169, "start_aa": "Thr", "end_pos": 169, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr169", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQ94", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ94" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQ94", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ94" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G54040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G54040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LCZ9", "url": "https://www.uniprot.org/uniprotkb/Q9LCZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 169 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LHA3-1", "uniprot_ac": "Q9LHA3", "uniprot_id": "Q9LHA3_ARATH", "mass": { "chemical_mass": 76474.0, "monoisotopic_mass": 76474.0 }, "refseq": { "ac": "NP_189514", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189514" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9LHA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_189514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189514" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHA3", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3", "locus": {} } ], "crossref": [ { "id": "AT3G28720", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G28720", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822504", "url": "https://www.ncbi.nlm.nih.gov/gene/822504", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR057228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28720", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LDWKLIE", "url": "https://omabrowser.org/oma/group/LDWKLIE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31515:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31515:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25483", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25483", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189514", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189514", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28720", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28720", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQC2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHA3", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHA3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTHHRITTYFNGGSASIFLLLLLITTTSSSSPPIPGLDTFLTNQYRLDPKSSNDSFTSLSSSLKRSLSSSSIHFSSLSKSLLSLSISIPLNVRFIGDSFPSSAASTLSEFISAAVTNDNFHVISPSPDSSTNHKLVISHSLHLDASLSPQSLSTRLDSTLKTLISSTTSSLRSNLLSIQYNPIDEIIKQEYEKEKHGDGGVYIYLISLGSQAKPYAYSYSHGDSSAGFTKCLGSIWTGKDRYLWIDLSAGPVDYGPALSGDGVLPRGEFHPLAALHGRPKSEKALLADLASLVYNAYQVLIVPSLRIPVYFEDTLVVQFIHVYGSEVKDSSGLDLEFVKRTFMDEAESGGLLLGEQKLSFKSYSVNYRECSICSFAVSRGMNSYTSRFLFDNYTLIVSEYLDSKHMHRALTDSAEELRRVAGIVEEEGNEFARVLPVYVFDLDINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDLERPLVGSILQSMWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAKRNVILTSLNTTITSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMALFYLRSASHDLYSVHSVVYLASQRVEASLNCFKDPPFPWGTVSVSGFGLMAVGYVFSKRDRLFRNKRKQF", "length": 687, "header": "tr|Q9LHA3-1|Q9LHA3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHA3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQC2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3/entry#A0A1I9LQC2-1", "sequence": { "sequence": "MIVFCWSETPKFNPNVKNPLKSNPNLTFLALESPNKSSSSSSSSNLHSHMTHHRITTYFNGGSASIFLLLLLITTTSSSSPPIPGLDTFLTNQYRLDPKSSNDSFTSLSSSLKRSLSSSSIHFSSLSKSLLSLSISIPLNVRFIGDSFPSSAASTLSEFISAAVTNDNFHVISPSPDSSTNHKLVISHSLHLDASLSPQSLSTRLDSTLKTLISSTTSSLRSNLLSIQYNPIDEIIKQEYEKEKHGDGGVYIYLISLGSQAKPYAYSYSHGDSSAGFTKCLGSIWTGKDRYLWIDLSAGPVDYGPALSGDGVLPRGEFHPLAALHGRPKSEKALLADLASLVYNAYQVLIVPSLRIPVYFEDTLVVQFIHVYGSEVKDSSGLDLEFVKRTFMDEAESGGLLLGEQKLSFKSYSVNYRECSICSFAVSRGMNSYTSRFLFDNYTLIVSEYLDSKHMHRALTDSAEELRRVAGIVEEEGNEFARVLPVYVFDLDINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDLERPLVGSILQSMWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAKRNVILTSLNTTITSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMALFYLRSASHDLYSVHSVVYLASQRVEASLNCFKDPPFPWGTVSVSGFGLMAVGYVFSKRDRLFRNKRKQF", "length": 736, "header": "tr|A0A1I9LQC2-1|Q9LHA3_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHA3-1" }, "locus": { "chromosome": "3", "start_pos": 10782095, "end_pos": 10784581, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28720.2", "url": "https://www.ensemblgenomes.org/id/AT3G28720.2" }, { "database": "Ensembl Peptide", "id": "AT3G28720.2", "url": "https://www.ensemblgenomes.org/id/AT3G28720.2" } ] } }, { "isoform_ac": "Q9LHA3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHA3/entry#Q9LHA3-1", "sequence": { "sequence": "MTHHRITTYFNGGSASIFLLLLLITTTSSSSPPIPGLDTFLTNQYRLDPKSSNDSFTSLSSSLKRSLSSSSIHFSSLSKSLLSLSISIPLNVRFIGDSFPSSAASTLSEFISAAVTNDNFHVISPSPDSSTNHKLVISHSLHLDASLSPQSLSTRLDSTLKTLISSTTSSLRSNLLSIQYNPIDEIIKQEYEKEKHGDGGVYIYLISLGSQAKPYAYSYSHGDSSAGFTKCLGSIWTGKDRYLWIDLSAGPVDYGPALSGDGVLPRGEFHPLAALHGRPKSEKALLADLASLVYNAYQVLIVPSLRIPVYFEDTLVVQFIHVYGSEVKDSSGLDLEFVKRTFMDEAESGGLLLGEQKLSFKSYSVNYRECSICSFAVSRGMNSYTSRFLFDNYTLIVSEYLDSKHMHRALTDSAEELRRVAGIVEEEGNEFARVLPVYVFDLDINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDLERPLVGSILQSMWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAKRNVILTSLNTTITSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMALFYLRSASHDLYSVHSVVYLASQRVEASLNCFKDPPFPWGTVSVSGFGLMAVGYVFSKRDRLFRNKRKQF", "length": 687, "header": "tr|Q9LHA3-1|Q9LHA3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHA3-1" }, "locus": { "chromosome": "3", "start_pos": 10782176, "end_pos": 10784634, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28720.1", "url": "https://www.ensemblgenomes.org/id/AT3G28720.1" }, { "database": "Ensembl Peptide", "id": "AT3G28720.1", "url": "https://www.ensemblgenomes.org/id/AT3G28720.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 158, "end_pos": 158, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHA3" } ], "site_lbl": "Ser158" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQC2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQC2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G12540", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820433", "url": "https://www.ncbi.nlm.nih.gov/gene/820433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G12540", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12540", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CENPHLV", "url": "https://omabrowser.org/oma/group/CENPHLV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1I9LSR6", "url": "https://www.orthodb.org/?gene=A0A1I9LSR6", "database": "OrthoDB", "categories": [ "Protein 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12540", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LSR6", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHB3", "url": "https://www.uniprot.org/uniprotkb/Q9LHB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHB3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEDLLVEDETKDQPGASVASLLDHHRRHPQPSLQQQPSKVNEHKSEEEKNDLIKKKQKRSLQREVMKMQGELEDEQALNKALRDMHRGPVMSQPRLSLLLLPPQVQELIEELATVEAEILCLEKRIQDLKLDVYSEKKENKELEDSIDEGEEERMMNPKRLLQRQNHLPCDADNDLIKMRSEDLKQRSKSQSYGDHHVVKDIQMNSPRTHASIGSTMEFSSRIHSSTFSDGMSRTQEKNNVQETTPNGVSEDLVKCLMGIYLELNRSSREREGSKTVSKLSLTHLKNASFKRKSVYDHNASNLDPYGAVMGTSLRDIGEYKNFIHITRTSIDVSRLSDCSTSLVNLRVLKEKLSKVDLSFLNHKKKMAFWINTYNACVMNGFLEHGLPSSKEKLLTILKMATIDVGGTQLSALDIEGSILQSPCEPRESVSAGESEVRIQTRYGFRCVEPNLMFVLCRGDWSSPALRVYTAEDVVNELIKARTEYLEASIGVSGRKKIVIPRFLHKRLRDFAEDEGSLIEWICSQLPPAQRCFQLKETAMEGLNKKSESQLKKLIEVRSHEYEFRYLLAL", "length": 572, "header": "tr|Q9LHB3-1|Q9LHB3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHB3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LSR6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHB3/entry#A0A1I9LSR6-1", "sequence": { "sequence": "MKMQGELEDEQALNKALRDMHRGPVMSQPRLSLLLLPPQVQELIEELATVEAEILCLEKRIQDLKLDVYSEKKENKELEDSIDEGEEERMMNPKRLLQRQNHLPCDADNDLIKMRSEDLKQRSKSQSYGDHHVVKDIQMNSPRTHASIGSTMEFSSRIHSSTFSDGMSRTQEKNNVQETTPNGVSEDLVKCLMGIYLELNRSSREREGSKTVSKLSLTHLKNASFKRKSVYDHNASNLDPYGAVMGTSLRDIGEYKNFIHITRTSIDVSRLSDCSTSLVNLRVLKEKLSKVDLSFLNHKKKMAFWINTYNACVMNGFLEHGLPSSKEKLLTILKMATIDVGGTQLSALDIEGSILQSPCEPRESVSAGESEVRIQTRYGFRCVEPNLMFVLCRGDWSSPALRVYTAEDVVNELIKARTEYLEASIGVSGRKKIVIPRFLHKRLRDFAEDEGSLIEWICSQLPPAQRCFQLKETAMEGLNKKSESQLKKLIEVRSHEYEFRYLLAL", "length": 505, "header": "tr|A0A1I9LSR6-1|Q9LHB3_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHB3-1" }, "locus": { "chromosome": "3", "start_pos": 3975120, "end_pos": 3977365, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12540.2", "url": "https://www.ensemblgenomes.org/id/AT3G12540.2" }, { "database": "Ensembl Peptide", "id": "AT3G12540.2", "url": 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"evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12540.1", "url": "https://www.ensemblgenomes.org/id/AT3G12540.1" }, { "database": "Ensembl Peptide", "id": "AT3G12540.1", "url": "https://www.ensemblgenomes.org/id/AT3G12540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSR6", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSR6", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": 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"uniprotkb_annotation": "DUF547", "eco_id": "ECO_0000259", "start_pos": 361, "end_pos": 488, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "Q9LHB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHB3" }, { "id": "PF14389", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14389" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ternary complex factor MIP1 leucine-zipper", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 138, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LHL2-1", "uniprot_ac": "Q9LHL2", "uniprot_id": "Q9LHL2_ARATH", "mass": { "chemical_mass": 37864.0, "monoisotopic_mass": 37864.0 }, "refseq": { "ac": "NP_683559", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683559" }, "gene_names": [ { "name": "RBGD3", "type": "recommended", "evidence": [ { "id": "Q9LHL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ] } ], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_683559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683559" }, { "id": "Q9LHL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "RBGD3", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2", "locus": {} } ], "crossref": [ { "id": "AT3G13224", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G13224", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820515", "url": "https://www.ncbi.nlm.nih.gov/gene/820515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LHL2", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LHL2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G13224", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13224", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVDTEMN", "url": "https://omabrowser.org/oma/group/QVDTEMN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1I9LTC4", "url": "https://www.orthodb.org/?gene=A0A1I9LTC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LHL2", "url": "https://www.orthodb.org/?gene=Q9LHL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48033:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48033:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_683559", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13224", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13224", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LTC4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHL2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHPYAR", "length": 358, "header": "tr|Q9LHL2-1|Q9LHL2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=RBGD3 PE=1 SV=1 CANONICAL=Q9LHL2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LTC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2/entry#A0A1I9LTC4-1", "sequence": { "sequence": "MFCLEFLCCRKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHPYAR", "length": 349, "header": "tr|A0A1I9LTC4-1|Q9LHL2_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=RBGD3 PE=1 SV=1 CANONICAL=Q9LHL2-1" }, "locus": { "chromosome": "3", "start_pos": 4254990, "end_pos": 4257407, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13224.3", "url": "https://www.ensemblgenomes.org/id/AT3G13224.3" }, { "database": "Ensembl Peptide", "id": "AT3G13224.3", "url": "https://www.ensemblgenomes.org/id/AT3G13224.3" } ] } }, { "isoform_ac": "Q9LHL2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2/entry#Q9LHL2-1", "sequence": { "sequence": "MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHPYAR", "length": 358, "header": "tr|Q9LHL2-1|Q9LHL2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=RBGD3 PE=1 SV=1 CANONICAL=Q9LHL2-1" }, "locus": { "chromosome": "3", "start_pos": 4254726, "end_pos": 4257407, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13224.2", "url": "https://www.ensemblgenomes.org/id/AT3G13224.2" }, { "database": "Ensembl Peptide", "id": "AT3G13224.2", "url": "https://www.ensemblgenomes.org/id/AT3G13224.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 190, "end_pos": 190, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL2" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser190" }, { "start_pos": 194, "end_pos": 194, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser194" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTC4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTC4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL2" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTC4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTC4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G13224", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13224", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZYE7-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEVPPRLSQVPPPLFPSAPATLASRSLSHWRPRAPRQLAPLLPSLAPSSARQGARRAQRHVTAQQPSRLAGVAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARPHPPADNPAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY", "length": 420 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1N2T0-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRSARQHLPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY", "length": 420 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O14979-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY", "length": 420 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q08473-1", "protein_name": "RNA-binding protein squid", "gene_name": "sqd", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQQRHQPY", "length": 344 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q3SWU3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "Hnrnpdl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTGTARSALPLPQSPARALRPSGAARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY", "length": 322 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5ZI72-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEDATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYSDQSYSGYGGYDYSGYNYPNYGYGPGYTDYSGQQSTYGKASRGGGNHQNNYQPY", "length": 301 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q75K16-1", "protein_name": "RNA-binding region RNP-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAKDQKAIESKKRKKEESESETESSEENNASSSSESESEDELKVVGEGSSSSKSTFTKKESAAKDESSNTKTDDDLKVFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVAAFITFADEKGRDTAITYNGKDFNGQGSLRINGANSKPSDGEGEPTTIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVEKAIALTGTKFEGREIQVERSQRGGGRSSSFGRGGGRGGFGGGRGGRGGFGNGGGRGGFGGGRGGGRGGSGGRGGFGNKRGRFE", "length": 299 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Z130-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "Hnrnpdl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY", "length": 301 }, "evidence": [ { "id": "Q9LHL2", "url": "https://omabrowser.org/oma/group/Q9LHL2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL2", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LHL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHL2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 95, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 190, 194 ], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 147, "end_pos": 149 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 208, "end_pos": 210 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LH42-1", "uniprot_ac": "Q9LH42", "uniprot_id": "Y3195_ARATH", "mass": { "chemical_mass": 35948.0, "monoisotopic_mass": 35948.0 }, "refseq": { "ac": "NP_001118662", "name": "hypothetical protein (DUF626)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118662" }, "gene_names": [ { "name": "T31J18.2", "type": "synonym", "evidence": [ { "id": "Q9LH42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ] } ], "protein_names": [ { "name": "UPF0725 protein At3g19520", "type": "recommended", "evidence": [ { "id": "Q9LH42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH42/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF626)", "type": "synonym", "evidence": [ { "id": "NP_001118662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118662" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LH42", "locus": {} } ], "crossref": [ { "id": "Q9LH42", "url": "https://alphafold.ebi.ac.uk/entry/Q9LH42", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G19520", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G19520", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "821488", "url": "https://www.ncbi.nlm.nih.gov/gene/821488", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LH42", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LH42*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR006462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G19520", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19520", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECSIARI", "url": "https://omabrowser.org/oma/group/ECSIARI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31260:SF77", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31260:SF77", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LH42", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LH42", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001118662", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118662", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G19520", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G19520", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LTD3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTD4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH42-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSLSVNDRKDFVDGQMKYWRQIAESDGFDIDDVPVPRGTRAGLWSVDCKHPRFRLRACLPKIYAMVGLHRYNLLRGTNFEHLELLKYNESMNCVCSYYITSVAVDLSSQLQKTFQIRVDEKSFGDLDLTVSVARPNDEEKVTTEKRFIHHFHCEAAADDFYKGALPDWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVRYQQTSESDLSKLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVERKAIVRRVIDERSGHLTLLGGFSNAKNDLNQSSDDEQPFGKRRRI", "length": 312, "header": "sp|Q9LH42-1|Y3195_ARATH Isoform 1 of UPF0725 protein At3g19520 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LH42-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LTD3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH42/entry#A0A1I9LTD3-1", "sequence": { "sequence": "MTSLSVNDRKDFVDGQMKYWRQIAESDGFDIDDVPVPRGTRAGLWSVDCKHPRFRLRACLPKIYAMVGLHRYNLLRGTNFEHLELLKYNESMNCVCSYYITSVAVDLSSQLQKTFQIRVDEKSFGDLDLTVSVARPNDEEKVTTEKRFIHHFHCEAAADDFYKGALPDWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVRYQQTSEVWFASNCCCMQSDLSKLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVERKAIVRRVIDERSGHLTLLGGFSNAKNDLNQSSDDEQPFGKRRRI", "length": 323, "header": "tr|A0A1I9LTD3-1|Y3195_ARATH Computationally mapped isoform of UPF0725 protein At3g19520 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LH42-1" }, "locus": { "chromosome": "3", "start_pos": 6772570, "end_pos": 6774445, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19520.3", "url": "https://www.ensemblgenomes.org/id/AT3G19520.3" }, { "database": "Ensembl Peptide", "id": "AT3G19520.3", "url": "https://www.ensemblgenomes.org/id/AT3G19520.3" } ] } }, { "isoform_ac": "A0A1I9LTD4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH42/entry#A0A1I9LTD4-1", "sequence": { "sequence": "MTSLSVNDRKDFVDGQMKYWRQIAESDGFDIDDVPVPRGTRAGLWSVDCKHPRFRLRACLPKIYAMVGLHRYNLLRGTNFEHLELLKYNESMNCVCSYYITSVAVDLSSQLQKTFQIRVDEKSFGDLDLTVSVARPNDEEKVTTEKRFIHHFHCEAAADDFYKGALPDWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVRYQQTSEVFVSLLQNNDIQ", "length": 224, "header": "tr|A0A1I9LTD4-1|Y3195_ARATH Computationally mapped isoform of UPF0725 protein At3g19520 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LH42-1" }, "locus": { "chromosome": "3", "start_pos": 6772644, "end_pos": 6774538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19520.4", "url": "https://www.ensemblgenomes.org/id/AT3G19520.4" }, { "database": "Ensembl Peptide", "id": "AT3G19520.4", "url": "https://www.ensemblgenomes.org/id/AT3G19520.4" } ] } }, { "isoform_ac": "Q9LH42-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH42/entry#Q9LH42-1", "sequence": { "sequence": "MTSLSVNDRKDFVDGQMKYWRQIAESDGFDIDDVPVPRGTRAGLWSVDCKHPRFRLRACLPKIYAMVGLHRYNLLRGTNFEHLELLKYNESMNCVCSYYITSVAVDLSSQLQKTFQIRVDEKSFGDLDLTVSVARPNDEEKVTTEKRFIHHFHCEAAADDFYKGALPDWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVRYQQTSESDLSKLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVERKAIVRRVIDERSGHLTLLGGFSNAKNDLNQSSDDEQPFGKRRRI", "length": 312, "header": "sp|Q9LH42-1|Y3195_ARATH Isoform 1 of UPF0725 protein At3g19520 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LH42-1" }, "locus": { "chromosome": "3", "start_pos": 6772644, "end_pos": 6774538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19520.1", "url": "https://www.ensemblgenomes.org/id/AT3G19520.1" }, { "database": "Ensembl Peptide", "id": "AT3G19520.1", "url": "https://www.ensemblgenomes.org/id/AT3G19520.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 300, "end_pos": 300, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH42" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser300" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTD3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTD3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LH42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH42" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LH42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH42" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19520", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19520", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LH42", "url": "https://www.uniprot.org/uniprotkb/Q9LH42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LH42-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9LH42-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9LH42" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 300 ], "sequon_annotation_sites": [ { "start_pos": 297, "end_pos": 299 }, { "start_pos": 89, "end_pos": 91 } ] }, 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] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH98", "url": "https://www.uniprot.org/uniprotkb/Q9LH98" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LH98", "locus": {} } ], "crossref": [ { "id": "AT3G28770", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G28770", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822509", "url": "https://www.ncbi.nlm.nih.gov/gene/822509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28770", 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28770", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LTR8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTR9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH98", "url": "https://www.uniprot.org/uniprotkb/Q9LH98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH98-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKVYLFFVCCIVATSLTLNVVLAHETVVNPPNTIKDIEPYISDRALGFVLKLENNCPIREQLRSFFEKLKDLLKLESSVTPLIEDNEPKTFKFDLKSKSENLLQTMFMLGRGLLSSSIRKEMFEVMKSLTELHAAIGRVIIEKHIKGDEAMSLSLEQKNAVETSITQWEQTITRIVKIVVEVKSKSSSEASSEESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNGGDVSMENLQGNKVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAIEKNLESKEDVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESKEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVSTEDKNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLENKEDKKELKDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTEQSGGKKESMESESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDNKVKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNENGGKEVSTEEGSKDSNIVERNGGKEDSIKEGSEDGKTVEINGGEELSTEEGSKDGKIEEGKEGKENSTKEGSKDDKIEEGMEGKENSTKESSKDGKINEIHGDKEATMEEGSKDGGTNSTGKDSKDSKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKNNTMEAQGGSNGDSTNGETEETKESNVSMNNQNMQDVGSNENSMNNQTTGTGDDIISTTTDTESNTSKEVTSFISNLEEKSPGTQEFQSFFQKLKDYMKYLCPVSSTFEAKDSRSYMSEMISMATKLSDAMAVLQAKKSGSGQMKTTLQGYQQEVMKTLTILQSVMGKAVTEQQSKDSGSLTLTLSQQQAIKEIVLKWEQVMSQFVKIATESEKQFSLEISTENGYHMKKSYNSSSSSSSSSSSSSRSDLKLNGEHLKGMGMNG", "length": 2081, "header": "tr|Q9LH98-1|Q9LH98_ARATH Isoform 1 of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH98-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LTR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH98/entry#A0A1I9LTR8-1", "sequence": { "sequence": "MRKVYLFFVCCIVATSLTLNVVLAHETVVNPPNTIKDIEPYISDRALGFVLKLENNCPIREQLRSFFEKLKDLLKLESSVTPLIEDNEPKTFKFDLKSKSENLLQTMFMLGRGLLSSSIRKEMFEVMKSLTELHAAIGRVIIEKHIKGDEAMSLSLEQKNAVETSITQWEQTITRIVKIVVEVKSKSSSEASSEESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNGGDVSMENLQGNKVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAIEKNLESKEDVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESKEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVSTEDKNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLENKEDKKELKDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTEQSGGKKESMESESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDNKVKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNENGGKEVSTEEGSKDSNIVERNGGKEDSIKEGSEDGKTVEINGGEELSTEEGSKDGKIEEGKEGKENSTKESSKDGKINEIHGDKEATMEEGSKDGGTNSTGKDSKDSKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKNNTMEAQGGSNGDSTNGETEETKESNVSMNNQNMQDVGSNENSMNNQTTGTGDDIISTTTDTESNTSKEVTSFISNLEEKSPGTQEFQSFFQKLKDYMKYLCPVSSTFEAKDSRSYMSEMISMATKLSDAMAVLQAKKSGSGQMKTTLQGYQQEVMKTLTILQSVMGKAVTEQQSKDSGSLTLTLSQQQAIKEIVLKWEQVMSQFVKIATESEKQFSLEISTENGYHMKKSYNSSSSSSSSSSSSSRSDLKLNGEHLKGMGMNG", "length": 2061, "header": "tr|A0A1I9LTR8-1|Q9LH98_ARATH Computationally mapped isoform of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH98-1" }, "locus": { "chromosome": "3", "start_pos": 10796695, "end_pos": 10803453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28770.2", "url": "https://www.ensemblgenomes.org/id/AT3G28770.2" }, { "database": "Ensembl Peptide", "id": "AT3G28770.2", "url": "https://www.ensemblgenomes.org/id/AT3G28770.2" } ] } }, { "isoform_ac": "A0A1I9LTR9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH98/entry#A0A1I9LTR9-1", "sequence": { "sequence": "MRKVYLFFVCCIVATSLTLNVVLAHETVVNPPNTIKDIEPYISDRALGFVLKLENNCPIREQLRSFFEKLKDLLKLESSVTPLIEDNEPKTFKFDLKSKSENLLQTMFMLGRGLLSSSIRKEMFEVMKSLTELHAAIGRVIIEKHIKGDEAMSLSLEQKNAVETSITQWEQTITRIVKIVVEVKSKSSSEASSEESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNGGDVSMENLQGNKVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAIEKNLESKEDVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESKEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVSTEDKNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLENKEDKKELKDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTEQSGGKKESMESESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDNKVKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNENGGKEVSTEEGSKDSNIVERNGGKEDSIKEGSEDGKTVEINGGEELSTEEGSKDGKIEEGKEGKENSTKESSKDGKINEIHGDKEATMEEGSKDGGTNSTGKDSKDSKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKNNTMEAQGGSNGDSTNGETEETKESNVSMNNQNMQDVGSNENSMNNQTTGTGDDIISTTTDTESNTSKEVTSFISNLEEKSPGTQEFQSFFQKLKDYMKYLCPVSSTFEAKDSRSYMSEMISMATKLSDAMAVLQAKKSGSGQVRLIKTIL", "length": 1948, "header": "tr|A0A1I9LTR9-1|Q9LH98_ARATH Computationally mapped isoform of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH98-1" }, "locus": { "chromosome": "3", "start_pos": 10796716, "end_pos": 10803255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28770.3", "url": "https://www.ensemblgenomes.org/id/AT3G28770.3" }, { "database": "Ensembl Peptide", "id": "AT3G28770.3", "url": "https://www.ensemblgenomes.org/id/AT3G28770.3" } ] } }, { "isoform_ac": "Q9LH98-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH98/entry#Q9LH98-1", "sequence": { "sequence": "MRKVYLFFVCCIVATSLTLNVVLAHETVVNPPNTIKDIEPYISDRALGFVLKLENNCPIREQLRSFFEKLKDLLKLESSVTPLIEDNEPKTFKFDLKSKSENLLQTMFMLGRGLLSSSIRKEMFEVMKSLTELHAAIGRVIIEKHIKGDEAMSLSLEQKNAVETSITQWEQTITRIVKIVVEVKSKSSSEASSEESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNGGDVSMENLQGNKVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAIEKNLESKEDVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESKEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVSTEDKNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLENKEDKKELKDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNVGNKEDSKDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTEQSGGKKESMESESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDNKVKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNENGGKEVSTEEGSKDSNIVERNGGKEDSIKEGSEDGKTVEINGGEELSTEEGSKDGKIEEGKEGKENSTKEGSKDDKIEEGMEGKENSTKESSKDGKINEIHGDKEATMEEGSKDGGTNSTGKDSKDSKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKNNTMEAQGGSNGDSTNGETEETKESNVSMNNQNMQDVGSNENSMNNQTTGTGDDIISTTTDTESNTSKEVTSFISNLEEKSPGTQEFQSFFQKLKDYMKYLCPVSSTFEAKDSRSYMSEMISMATKLSDAMAVLQAKKSGSGQMKTTLQGYQQEVMKTLTILQSVMGKAVTEQQSKDSGSLTLTLSQQQAIKEIVLKWEQVMSQFVKIATESEKQFSLEISTENGYHMKKSYNSSSSSSSSSSSSSRSDLKLNGEHLKGMGMNG", "length": 2081, "header": "tr|Q9LH98-1|Q9LH98_ARATH Isoform 1 of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH98-1" }, "locus": { "chromosome": "3", "start_pos": 10796695, "end_pos": 10803453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28770.1", "url": "https://www.ensemblgenomes.org/id/AT3G28770.1" }, { "database": "Ensembl Peptide", "id": "AT3G28770.1", "url": "https://www.ensemblgenomes.org/id/AT3G28770.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1565, "end_pos": 1565, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser1565" }, { "start_pos": 1945, "end_pos": 1945, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser1945" }, { "start_pos": 2048, "end_pos": 2048, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser2048" }, { "start_pos": 2049, "end_pos": 2049, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Tyr2049" }, { "start_pos": 2051, "end_pos": 2051, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser2051" }, { "start_pos": 2052, "end_pos": 2052, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser2052" }, { "start_pos": 2053, "end_pos": 2053, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser2053" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTR8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTR8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTR8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9LH98", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH98" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT3G28770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28770", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1090, "end_pos": 1092, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1240, "end_pos": 1242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1351, "end_pos": 1353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1462, "end_pos": 1464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1688, "end_pos": 1690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1708, "end_pos": 1710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1740, "end_pos": 1742, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1785, "end_pos": 1787, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1798, "end_pos": 1800, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1818, "end_pos": 1820, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1843, "end_pos": 1845, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1863, "end_pos": 1865, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1882, "end_pos": 1884, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2050, "end_pos": 2052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMT6", "url": "https://www.uniprot.org/uniprotkb/Q9LMT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMT6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFNWVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSRTPPLFGTMKYLTEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPLAEAS", "length": 405, "header": "tr|Q9LMT6-1|Q9LMT6_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMT6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AMW3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMT6/entry#A0A1P8AMW3-1", "sequence": { "sequence": "MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFNWVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKETQRSHMAWQLLLYKLQMNVSKKVRKHPKHSTPLRLLQEHRPSLEQ", "length": 337, "header": "tr|A0A1P8AMW3-1|Q9LMT6_ARATH Computationally mapped isoform of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMT6-1" }, "locus": { "chromosome": "1", "start_pos": 6169285, "end_pos": 6173273, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G17940.4", "url": "https://www.ensemblgenomes.org/id/AT1G17940.4" }, { "database": "Ensembl Peptide", "id": "AT1G17940.4", "url": "https://www.ensemblgenomes.org/id/AT1G17940.4" } ] } }, { "isoform_ac": "A0A1P8AMW8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMT6/entry#A0A1P8AMW8-1", "sequence": { "sequence": "MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFNWVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKVLLHSFSLALILLSYLNLSVPFVLRYGPFL", "length": 321, "header": "tr|A0A1P8AMW8-1|Q9LMT6_ARATH Computationally mapped isoform of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMT6-1" }, "locus": { "chromosome": "1", "start_pos": 6169285, "end_pos": 6173273, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G17940.2", "url": "https://www.ensemblgenomes.org/id/AT1G17940.2" }, { "database": "Ensembl Peptide", "id": "AT1G17940.2", "url": "https://www.ensemblgenomes.org/id/AT1G17940.2" } ] } }, { "isoform_ac": "Q9LMT6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMT6/entry#Q9LMT6-1", "sequence": { "sequence": "MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRTRIVVMANQEGPTITRTRRKTQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFNWVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSRTPPLFGTMKYLTEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPLAEAS", "length": 405, "header": "tr|Q9LMT6-1|Q9LMT6_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMT6-1" }, "locus": { "chromosome": "1", "start_pos": 6169285, "end_pos": 6173273, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G17940.1", "url": "https://www.ensemblgenomes.org/id/AT1G17940.1" }, { "database": "Ensembl Peptide", "id": "AT1G17940.1", "url": "https://www.ensemblgenomes.org/id/AT1G17940.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 25, "end_pos": 25, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LMT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMT6" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser25" }, { "start_pos": 27, "end_pos": 27, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LMT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMT6" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Tyr27" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AMW3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AMW3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LMT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMT6" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ANI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FYH5", "url": "https://www.uniprot.org/uniprotkb/Q9FYH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FYH5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEVATPSSESASASTTIANDSDEEMDDEKKNKSLKPIGKKLKKKFKLGMKNRRSKGVLRGKRN", "length": 120, "header": "tr|Q9FYH5-1|Q9FYH5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYH5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ANI7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYH5/entry#A0A1P8ANI7-1", "sequence": { "sequence": "MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEVATPSSESASASTTIANDSVEIFEGAC", "length": 86, "header": "tr|A0A1P8ANI7-1|Q9FYH5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYH5-1" }, "locus": { "chromosome": "1", "start_pos": 10993073, "end_pos": 10994152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G30880.2", "url": "https://www.ensemblgenomes.org/id/AT1G30880.2" }, { "database": "Ensembl Peptide", "id": "AT1G30880.2", "url": "https://www.ensemblgenomes.org/id/AT1G30880.2" } ] } }, { "isoform_ac": "Q9FYH5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYH5/entry#Q9FYH5-1", "sequence": { "sequence": "MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEVATPSSESASASTTIANDSDEEMDDEKKNKSLKPIGKKLKKKFKLGMKNRRSKGVLRGKRN", "length": 120, "header": "tr|Q9FYH5-1|Q9FYH5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYH5-1" }, "locus": { "chromosome": "1", "start_pos": 10993002, "end_pos": 10994148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G30880.1", "url": "https://www.ensemblgenomes.org/id/AT1G30880.1" }, { "database": "Ensembl Peptide", "id": "AT1G30880.1", "url": "https://www.ensemblgenomes.org/id/AT1G30880.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 69, "end_pos": 69, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYH5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYH5" } ], "site_lbl": "Ser69" }, { "start_pos": 71, "end_pos": 71, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYH5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYH5" } ], "site_lbl": "Ser71" }, { "start_pos": 78, "end_pos": 78, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", 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Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANI7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANI7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FYH5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYH5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FYH5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYH5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANI7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANI7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet 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"common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6", "locus": {} } ], "crossref": [ { "id": "AT1G56540", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G56540", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842107", "url": "https://www.ncbi.nlm.nih.gov/gene/842107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011713", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23286", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23286", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT1G56540", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G56540", "database": "TAIR", 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"MASSSSSSSRRTWRYNVFTSFHGPDVRKTFLSHLRKQFNYNGITMFDDQRIERSQIIAPALTEAIRESRIAIVLLSKNYASSSWCLDELLEILDCKEQLGQIVMTVFYGVHPSDVRKQTGDFGIAFNETCARKTEEQRQKWSQALTYVGNIAGEHFQNWDNEAKMIEKIASDVSDKLNTTPSRDFDGMIGLEAHLRKIESLLDLDYDGAKIVGISGPAGIGKSTIARALHSVLSKRFQHNCFMDNLHESYKIGLVEYGLRLRLQEQLLSKILNLDGIRIAHLGVIRERLHDQKVLIILDDVESLDQLDALANIEWFGPGSRVIVTTENKEILQQHGISDIYHVGFPSSKEALMIFCLSAFRQLSPPDRFMNLAAEVAKLCGYLPLALHVLGSSLRGKNYSDWIEELPRLQTCLDGRIESVLKVGYESLHEKDQALFLYIAVFFNYQHADYVTSMLAKTNLNVRLGLKILANRHLIHIGHGAKGIVVMHRLLKVMARQVISKQEPWKRQILVDTQEISYVLENAEGNGSIAGISFDVGEINKLTISAKAFERMHNLLLLKVYDPWFTGKGQVHIPEEMDFLPRLSLLRWDAYTRKTLPRRFCPENLVELNMPDSQLEKLWEGTQLLANLKTMKLSRSSRLKELPNLSNAKNLERLDLHECVALLELPSSISNLHKLYFLETNHCRRLQVIPTLTNLVSLEDIKMMGCLRLKSFPDIPANIIRLSVMETTIAEFPASLRHFSHIESFDISGSVNLKTFSTLLPTSVTELHIDNSGIESITDCIKGLHNLRVLALSNCKKLTSLPKLPSSLKWLRASHCESLERVSEPLNTPNADLDFSNCFKLDRQARQAIFQQRFVDGRALLPGRKVPALFDHRARGNSLTIPNSASYKVCVVISTEFDHKDRDSTIVSRLLCRCIVISNSVNSTDKEFVLTDVYKYRMEHLFIFHMVNPVSFFYPSSREIVLEFSSIHKHFDIVECGVQILTDETERNNNVGSADEDDLWYIHEFSESLRKEEKDKDSVAKSESCGASEKEDEEATKDKDEDIAEHSDSESISENRPRKRTMISATTNLKKWFLCLFLFFFFSFAFVKFSIYFDLF", 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Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXA6-1" }, "locus": { "chromosome": "1", "start_pos": 21181585, "end_pos": 21185495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56540.2", "url": "https://www.ensemblgenomes.org/id/AT1G56540.2" }, { "database": "Ensembl Peptide", "id": "AT1G56540.2", "url": "https://www.ensemblgenomes.org/id/AT1G56540.2" } ] } }, { "isoform_ac": "Q9FXA6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6/entry#Q9FXA6-1", "sequence": { "sequence": "MASSSSSSSRRTWRYNVFTSFHGPDVRKTFLSHLRKQFNYNGITMFDDQRIERSQIIAPALTEAIRESRIAIVLLSKNYASSSWCLDELLEILDCKEQLGQIVMTVFYGVHPSDVRKQTGDFGIAFNETCARKTEEQRQKWSQALTYVGNIAGEHFQNWDNEAKMIEKIASDVSDKLNTTPSRDFDGMIGLEAHLRKIESLLDLDYDGAKIVGISGPAGIGKSTIARALHSVLSKRFQHNCFMDNLHESYKIGLVEYGLRLRLQEQLLSKILNLDGIRIAHLGVIRERLHDQKVLIILDDVESLDQLDALANIEWFGPGSRVIVTTENKEILQQHGISDIYHVGFPSSKEALMIFCLSAFRQLSPPDRFMNLAAEVAKLCGYLPLALHVLGSSLRGKNYSDWIEELPRLQTCLDGRIESVLKVGYESLHEKDQALFLYIAVFFNYQHADYVTSMLAKTNLNVRLGLKILANRHLIHIGHGAKGIVVMHRLLKVMARQVISKQEPWKRQILVDTQEISYVLENAEGNGSIAGISFDVGEINKLTISAKAFERMHNLLLLKVYDPWFTGKGQVHIPEEMDFLPRLSLLRWDAYTRKTLPRRFCPENLVELNMPDSQLEKLWEGTQLLANLKTMKLSRSSRLKELPNLSNAKNLERLDLHECVALLELPSSISNLHKLYFLETNHCRRLQVIPTLTNLVSLEDIKMMGCLRLKSFPDIPANIIRLSVMETTIAEFPASLRHFSHIESFDISGSVNLKTFSTLLPTSVTELHIDNSGIESITDCIKGLHNLRVLALSNCKKLTSLPKLPSSLKWLRASHCESLERVSEPLNTPNADLDFSNCFKLDRQARQAIFQQRFVDGRALLPGRKVPALFDHRARGNSLTIPNSASYKVCVVISTEFDHKDRDSTIVSRLLCRCIVISNSVNSTDKEFVLTDVYKYRMEHLFIFHMVNPVSFFYPSSREIVLEFSSIHKHFDIVECGVQILTDETERNNNVGSADEDDLWYIHEFSESLRKEEKDKDSVAKSESCGASEKEDEEATKDKDEDIAEHSDSESISENRPRKRTMISATTNLKKWFLCLFLFFFFSFAFVKFSIYFDLF", "length": 1096, "header": "tr|Q9FXA6-1|Q9FXA6_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXA6-1" }, "locus": { "chromosome": "1", "start_pos": 21181585, "end_pos": 21185495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56540.1", "url": "https://www.ensemblgenomes.org/id/AT1G56540.1" }, { "database": "Ensembl Peptide", "id": "AT1G56540.1", "url": "https://www.ensemblgenomes.org/id/AT1G56540.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1064, "end_pos": 1064, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXA6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXA6" } ], "site_lbl": "Ser1064" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQI7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQI7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQI7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G56540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA6", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA6", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6" } ], "pmid": "" }, { "name": "response to fungus", "id": "GO:0009620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009620", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA6", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA6", "url": "https://www.uniprot.org/uniprotkb/Q9FXA6" } ], "pmid": "" }, { 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protein", "type": "synonym", "evidence": [ { "id": "NP_173121", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_173121" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FWR1", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1", "locus": {} } ], "crossref": [ { "id": "AT1G16770", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G16770", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838248", "url": "https://www.ncbi.nlm.nih.gov/gene/838248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "GSNHRYA", "url": "https://omabrowser.org/oma/group/GSNHRYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34776:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34776:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_173121", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_173121", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G16770", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G16770", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AQP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FWR1", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FWR1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQGKEVKTRPDPQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSLPDPSKKSQPFWGFVEMVTTNVEDVKNALKGEEYETKTRGHRHKPPARAVGEGIYRILRHKPNPTRKHHTHLVYKLEFPSVSQTREHEPQESLNIEPEGSFLIQIRNPEQGGGGRSGFGGLQRKRKAQFPVHIQAHLGHTRFGPADPPDFLNYEGCELLLISASDDIEEELGMELEPEGDGEESTCDLLKTFGDDVEATPLLRGTWE", "length": 324, "header": "tr|Q9FWR1-1|Q9FWR1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FWR1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AQP5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1/entry#A0A1P8AQP5-1", "sequence": { "sequence": "MGKKSLPDPSKKSQPFWGFVEMVTTNVEDVKNALKGEEYETKTRGHRHKPPARAVGEGIYRILRHKPNPTRKHHTHLVYKLEFPSVSQTREHEPQESLNIEPEGSFLIQIRNPEQGGGGRSGFGGLQRKRKAQFPVHIQAHLGHTRFGPADPPDFLNYEGCELLLISASDDIEEELGMELEPEGDGEESTCDLLKTFGDDVEATPLLRGTWE", "length": 212, "header": "tr|A0A1P8AQP5-1|Q9FWR1_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FWR1-1" }, "locus": { "chromosome": "1", "start_pos": 5737945, "end_pos": 5739110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G16770.3", "url": "https://www.ensemblgenomes.org/id/AT1G16770.3" }, { "database": "Ensembl Peptide", "id": "AT1G16770.3", "url": "https://www.ensemblgenomes.org/id/AT1G16770.3" } ] } }, { "isoform_ac": "Q9FWR1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FWR1/entry#Q9FWR1-1", "sequence": { "sequence": "MGQGKEVKTRPDPQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSLPDPSKKSQPFWGFVEMVTTNVEDVKNALKGEEYETKTRGHRHKPPARAVGEGIYRILRHKPNPTRKHHTHLVYKLEFPSVSQTREHEPQESLNIEPEGSFLIQIRNPEQGGGGRSGFGGLQRKRKAQFPVHIQAHLGHTRFGPADPPDFLNYEGCELLLISASDDIEEELGMELEPEGDGEESTCDLLKTFGDDVEATPLLRGTWE", "length": 324, "header": "tr|Q9FWR1-1|Q9FWR1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FWR1-1" }, "locus": { "chromosome": "1", "start_pos": 5737878, "end_pos": 5739377, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G16770.1", "url": "https://www.ensemblgenomes.org/id/AT1G16770.1" }, { "database": "Ensembl Peptide", "id": "AT1G16770.1", "url": "https://www.ensemblgenomes.org/id/AT1G16770.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis 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R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQP5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AQP5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": 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"tr|Q9FWY3-1|Q9FWY3_ARATH Isoform 1 of Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FWY3-1" }, "locus": { "chromosome": "1", "start_pos": 568558, "end_pos": 570554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G02650.1", "url": "https://www.ensemblgenomes.org/id/AT1G02650.1" }, { "database": "Ensembl Peptide", "id": "AT1G02650.1", "url": "https://www.ensemblgenomes.org/id/AT1G02650.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 474, "end_pos": 474, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FWY3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FWY3" } ], "site_lbl": "Thr474" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", 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} ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZE2", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2", "locus": {} } ], "crossref": [ { "id": "AT1G26580", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G26580", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839198", "url": "https://www.ncbi.nlm.nih.gov/gene/839198", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G26580", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTWSMIE", 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"categories": [ "Protein" ] }, { "id": "Q9FZE2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFKRPFEDEKFHELPLKHSRQLDYNDKSTQFEEVSPHHAGFQKTVATVNEGNLCKSQGGESSEGDMFDEESNYVYPGHDMDDTFTWDTQGCGGRDATYSPHSGKYFELDIPPRVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADGEKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREELVKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVSFYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIESPLHQGTKKVYPLHHEEGEEDVSHSSNDEDDDDTKEGGTGLYDEHKMSSTVEYMDRFSGNNGERLNVEDDSCTSFELARNAVNCAEKDETVPGEQQKKLKDCNDPIDTKVWDASRCLNVPTNGKDLQPTRRIMEEIFGNGCWENKARNK", "length": 493, "header": "tr|Q9FZE2-1|Q9FZE2_ARATH Isoform 1 of ELM2 domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZE2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ARJ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2/entry#A0A1P8ARJ3-1", "sequence": { "sequence": "MFDEESNYVYPGHDMDDTFTWDTQGCGGRDATYSPHSGKYFELDIPPRVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADGEKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREELVKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVSFYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIESPLHQGTKKVYPLHHEEGEEDVSHSSNDEDDDDTKEGGTGLYDEHKMSSTVEYMDRFSGNNGERLNVEDDSCTSFELARNAVNCAEKDETVPGEQQKKLKDCNDPIDTKVWDASRCLNVPTNGKDLQPTRRIMEEIFGNGCWENKARNK", "length": 427, "header": "tr|A0A1P8ARJ3-1|Q9FZE2_ARATH Computationally mapped isoform of ELM2 domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZE2-1" }, "locus": { "chromosome": "1", "start_pos": 9184590, "end_pos": 9187521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26580.3", "url": "https://www.ensemblgenomes.org/id/AT1G26580.3" }, { "database": "Ensembl Peptide", "id": "AT1G26580.3", "url": "https://www.ensemblgenomes.org/id/AT1G26580.3" } ] } }, { "isoform_ac": "Q9FZE2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2/entry#Q9FZE2-1", "sequence": { "sequence": "MGFKRPFEDEKFHELPLKHSRQLDYNDKSTQFEEVSPHHAGFQKTVATVNEGNLCKSQGGESSEGDMFDEESNYVYPGHDMDDTFTWDTQGCGGRDATYSPHSGKYFELDIPPRVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADGEKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREELVKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVSFYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIESPLHQGTKKVYPLHHEEGEEDVSHSSNDEDDDDTKEGGTGLYDEHKMSSTVEYMDRFSGNNGERLNVEDDSCTSFELARNAVNCAEKDETVPGEQQKKLKDCNDPIDTKVWDASRCLNVPTNGKDLQPTRRIMEEIFGNGCWENKARNK", "length": 493, "header": "tr|Q9FZE2-1|Q9FZE2_ARATH Isoform 1 of ELM2 domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZE2-1" }, "locus": { "chromosome": "1", "start_pos": 9184567, "end_pos": 9187578, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26580.1", "url": "https://www.ensemblgenomes.org/id/AT1G26580.1" }, { "database": "Ensembl Peptide", "id": "AT1G26580.1", "url": "https://www.ensemblgenomes.org/id/AT1G26580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ARJ3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARJ3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ARJ3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARJ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G26580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26580", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE2", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2" } ], "pmid": "" }, { "name": "histone deacetylase complex", "id": "GO:0000118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000118", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE2", "url": "https://www.uniprot.org/uniprotkb/Q9FZE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FZ70-1", "uniprot_ac": "Q9FZ70", "uniprot_id": "FDL1_ARATH", "mass": { "chemical_mass": 47605.0, "monoisotopic_mass": 47605.0 }, "refseq": {}, "gene_names": [ { "name": "F13B4.6", "type": "synonym", "evidence": [ { "id": "Q9FZ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70" } ] }, { "name": "F13B4_6", "type": "synonym", "evidence": [ { "id": "Q9FZ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70" } ] } ], "protein_names": [ { "name": "F-box/FBD/LRR-repeat protein At1g13570", "type": "recommended", "evidence": [ { "id": "Q9FZ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZ70", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70", "locus": {} } ], "crossref": [ { "id": "Q9FZ70", "url": "https://alphafold.ebi.ac.uk/entry/Q9FZ70", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G13570", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G13570", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "837918", "url": "https://www.ncbi.nlm.nih.gov/gene/837918", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G13570", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G13570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQNIRIC", "url": "https://omabrowser.org/oma/group/HQNIRIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31639:SF237", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31639:SF237", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FZ70", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FZ70", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G13570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G13570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ARN3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ARN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FZ70", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FZ70-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGFDLFERDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFLQD", "length": 416, "header": "sp|Q9FZ70-1|FDL1_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FZ70-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ARN3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70/entry#A0A1P8ARN3-1", "sequence": { "sequence": "MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKVILLHPKYFEQLPLMKKTLFFDLST", "length": 292, "header": "tr|A0A1P8ARN3-1|FDL1_ARATH Computationally mapped isoform of F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FZ70-1" }, "locus": { "chromosome": "1", "start_pos": 4642236, "end_pos": 4644422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G13570.2", "url": "https://www.ensemblgenomes.org/id/AT1G13570.2" }, { "database": "Ensembl Peptide", "id": "AT1G13570.2", "url": "https://www.ensemblgenomes.org/id/AT1G13570.2" } ] } }, { "isoform_ac": "Q9FZ70-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70/entry#Q9FZ70-1", "sequence": { "sequence": "MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGFDLFERDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFLQD", "length": 416, "header": "sp|Q9FZ70-1|FDL1_ARATH Isoform 1 of F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FZ70-1" }, "locus": { "chromosome": "1", "start_pos": 4642124, "end_pos": 4644422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G13570.1", "url": "https://www.ensemblgenomes.org/id/AT1G13570.1" }, { "database": "Ensembl Peptide", "id": "AT1G13570.1", "url": "https://www.ensemblgenomes.org/id/AT1G13570.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 90, "end_pos": 90, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ70" } ], "site_lbl": "Thr90" }, { "start_pos": 91, "end_pos": 91, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ70" } ], "site_lbl": "Ser91" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ARN3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARN3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Functional annotation of a full-length Arabidopsis cDNA collection.", "journal": "Science", "date": "2002", "authors": "Seki Motoaki, Narusaka Mari, Kamiya Asako, Ishida Junko, Satou Masakazu, Sakurai Tetsuya, Nakajima Maiko, Enju Akiko, Akiyama Kenji, Oono Youko, Muramatsu Masami, Hayashizaki Yoshihide, Kawai Jun, Carninci Piero, Itoh Masayoshi, Ishii Yoshiyuki, Arakawa Takahiro, Shibata Kazuhiro, Shinagawa Akira, Shinozaki Kazuo", "evidence": [ { "database": "UniProtKB", "id": "Q9FZ70", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70" } ], "reference": [ { "type": "PubMed", "id": "11910074", "url": "https://glygen.org/publication/PubMed/11910074" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ARN3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ARN3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G13570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G13570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FZ70-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 416, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FZ70-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FZ70" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FZ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ70" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 5, "end_pos": 53, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 90, 91 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FRR8-1", "uniprot_ac": "Q9FRR8", "uniprot_id": "Q9FRR8_ARATH", "mass": { "chemical_mass": 26543.0, "monoisotopic_mass": 26543.0 }, "refseq": { "ac": "NP_172343", "name": "ENTH/VHS family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172343" }, "gene_names": [ { "name": "F22O13.15", "type": "synonym", "evidence": [ { "id": "NP_172343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172343" }, { "id": "Q9FRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8" } ] }, { "name": "F22O13_15", "type": "synonym", "evidence": [ { "id": "NP_172343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172343" }, { "id": "Q9FRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8" } ] } ], "protein_names": [ { "name": "ENTH/VHS family protein", "type": "synonym", "evidence": [ { "id": "NP_172343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172343" }, { "id": "Q9FRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FRR8", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8", "locus": {} } ], "crossref": [ { "id": "AT1G08670", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G08670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd03571", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03571", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "837389", "url": "https://www.ncbi.nlm.nih.gov/gene/837389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013809", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013809", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G08670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G08670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EEHYFWE", "url": "https://omabrowser.org/oma/group/EEHYFWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8ART5", "url": "https://www.orthodb.org/?gene=A0A1P8ART5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FRR8", "url": "https://www.orthodb.org/?gene=Q9FRR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12276", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12276", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12276:SF113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12276:SF113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01417", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01417", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_172343", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G08670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G08670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ART5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ART5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ART5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ART5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FRR8", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FRR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKLMQNPVLHELKKQASFFIKEKIKTARLAVTDVTAEELLTEEVTGSDHSSIDSRSMAAITRVSFEVDQFQRIVKILRQRMVVFDRKEWRGMCNTLSMLNHLLLNGPLSVFSEFQHERAIIEDAIKMEWIDERGFDCGLKVRNIAEKVLRLLEDDMFLKDERERNRKQSIGRITGFGNSSFVIHSETNNGRDGSLMLSNHQTCENDCIADDHPFVENEHKTAQLLLSSST", "length": 231, "header": "tr|Q9FRR8-1|Q9FRR8_ARATH Isoform 1 of ENTH/VHS family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRR8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ART5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8/entry#A0A1P8ART5-1", "sequence": { "sequence": "MAAITRVSFEVDQFQRIVKILRQRMVVFDRKEWRGMCNTLSMLNHLLLNGPLSVFSEFQHERAIIEDAIKMEWIDERGFDCGLKVRNIAEKVLRLLEDDMFLKDERERNRKQSIGRITGFGNSSFVIHSETNNGRDGSLMLSNHQTCENDCIADDHPFVENEHKTAQLLLSSST", "length": 174, "header": "tr|A0A1P8ART5-1|Q9FRR8_ARATH Computationally mapped isoform of ENTH/VHS family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRR8-1" }, "locus": { "chromosome": "1", "start_pos": 2760183, "end_pos": 2761599, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G08670.2", "url": "https://www.ensemblgenomes.org/id/AT1G08670.2" }, { "database": "Ensembl Peptide", "id": "AT1G08670.2", "url": "https://www.ensemblgenomes.org/id/AT1G08670.2" } ] } }, { "isoform_ac": "Q9FRR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRR8/entry#Q9FRR8-1", "sequence": { "sequence": "MSKLMQNPVLHELKKQASFFIKEKIKTARLAVTDVTAEELLTEEVTGSDHSSIDSRSMAAITRVSFEVDQFQRIVKILRQRMVVFDRKEWRGMCNTLSMLNHLLLNGPLSVFSEFQHERAIIEDAIKMEWIDERGFDCGLKVRNIAEKVLRLLEDDMFLKDERERNRKQSIGRITGFGNSSFVIHSETNNGRDGSLMLSNHQTCENDCIADDHPFVENEHKTAQLLLSSST", "length": 231, "header": "tr|Q9FRR8-1|Q9FRR8_ARATH Isoform 1 of ENTH/VHS family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRR8-1" }, "locus": { "chromosome": "1", "start_pos": 2760183, "end_pos": 2761599, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G08670.1", "url": "https://www.ensemblgenomes.org/id/AT1G08670.1" }, { "database": "Ensembl Peptide", "id": "AT1G08670.1", "url": "https://www.ensemblgenomes.org/id/AT1G08670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, 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"MVEPYETRNNGEASQMIRYQSYNHHNSRLPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEGVSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSGTLEMSGSNGFTGESKHSVKRWNMNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTEYGSYKQEYEGEHSDMYWNREYADGEDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRNFRRRII", "length": 315, "header": "tr|Q9FRK9-1|Q9FRK9_ARATH Isoform 1 of Erythronate-4-phosphate dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRK9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ASB8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRK9/entry#A0A1P8ASB8-1", "sequence": { "sequence": "MVEPYETRNNGEASQMIRYQSYNHHNSRLPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEGVSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSGTLEMSGSNGFTGESKHSVKRWNMNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTFNCLVLHFFKIIIMLPNSFILIECFECFS", "length": 270, "header": "tr|A0A1P8ASB8-1|Q9FRK9_ARATH Computationally mapped isoform of Erythronate-4-phosphate dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRK9-1" }, "locus": { "chromosome": "1", "start_pos": 28217099, "end_pos": 28218801, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G75180.4", "url": "https://www.ensemblgenomes.org/id/AT1G75180.4" }, { "database": "Ensembl Peptide", "id": "AT1G75180.4", "url": "https://www.ensemblgenomes.org/id/AT1G75180.4" } ] } }, { "isoform_ac": "Q9FRK9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRK9/entry#Q9FRK9-1", "sequence": { "sequence": "MVEPYETRNNGEASQMIRYQSYNHHNSRLPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEGVSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSGTLEMSGSNGFTGESKHSVKRWNMNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTEYGSYKQEYEGEHSDMYWNREYADGEDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRNFRRRII", "length": 315, "header": "tr|Q9FRK9-1|Q9FRK9_ARATH Isoform 1 of Erythronate-4-phosphate dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FRK9-1" }, "locus": { "chromosome": "1", "start_pos": 28215836, "end_pos": 28218801, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G75180.3", "url": "https://www.ensemblgenomes.org/id/AT1G75180.3" }, { "database": "Ensembl Peptide", "id": "AT1G75180.3", "url": "https://www.ensemblgenomes.org/id/AT1G75180.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASB8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASB8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASB8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASB8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G75180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G75180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FRK9", "url": "https://www.uniprot.org/uniprotkb/Q9FRK9" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FRK9", "url": 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Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASF3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASF3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LM77" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LM77" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LM77" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": 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"Protein", "Organism-specific" ] }, { "id": "A0A1P8ATV4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ATV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LN77", "url": "https://www.uniprot.org/uniprotkb/Q9LN77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LN77-1", "url": "https://www.uniprot.org/uniprotkb/Q9LN77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVAHSDLHNDLSSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKRF", "length": 291, "header": "sp|Q9LN77-1|P2A12_ARATH Isoform 1 of F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1 CANONICAL=Q9LN77-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ATV4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LN77/entry#A0A1P8ATV4-1", "sequence": { "sequence": "MGVAHSDLHNDLSSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFELFGDLSLLPCVRLLCTIRYLSCSYQSLDTCYGLTFIGACRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKRF", "length": 333, "header": "tr|A0A1P8ATV4-1|P2A12_ARATH Computationally mapped isoform of F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1 CANONICAL=Q9LN77-1" }, "locus": { "chromosome": "1", "start_pos": 4326739, "end_pos": 4328546, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G12710.2", "url": "https://www.ensemblgenomes.org/id/AT1G12710.2" }, { "database": "Ensembl Peptide", "id": "AT1G12710.2", "url": "https://www.ensemblgenomes.org/id/AT1G12710.2" } ] } }, { "isoform_ac": "Q9LN77-1", "url": "https://www.uniprot.org/uniprotkb/Q9LN77/entry#Q9LN77-1", "sequence": { "sequence": "MGVAHSDLHNDLSSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKRF", "length": 291, "header": "sp|Q9LN77-1|P2A12_ARATH Isoform 1 of F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1 CANONICAL=Q9LN77-1" }, "locus": { "chromosome": "1", "start_pos": 4326739, "end_pos": 4328616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G12710.1", "url": "https://www.ensemblgenomes.org/id/AT1G12710.1" }, { "database": "Ensembl Peptide", "id": "AT1G12710.1", "url": "https://www.ensemblgenomes.org/id/AT1G12710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LN77", "url": "https://www.uniprot.org/uniprotkb/Q9LN77" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Functional annotation of a full-length Arabidopsis cDNA collection.", "journal": "Science", "date": "2002", "authors": "Seki Motoaki, Narusaka Mari, Kamiya Asako, Ishida Junko, Satou Masakazu, Sakurai Tetsuya, Nakajima Maiko, Enju Akiko, Akiyama Kenji, Oono Youko, Muramatsu Masami, Hayashizaki Yoshihide, Kawai Jun, Carninci Piero, Itoh Masayoshi, Ishii Yoshiyuki, Arakawa Takahiro, Shibata Kazuhiro, Shinagawa Akira, Shinozaki Kazuo", "evidence": [ { "database": "UniProtKB", "id": "Q9LN77", "url": "https://www.uniprot.org/uniprotkb/Q9LN77" } ], "reference": [ { "type": "PubMed", "id": "11910074", "url": "https://glygen.org/publication/PubMed/11910074" } ] }, { "title": "Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms.", "journal": "Plant Physiol.", "date": "2003", "authors": "Dinant Sylvie, Clark Anna M, Zhu Yanmin, Vilaine Fran\u00e7oise, Palauqui Jean-Christophe, Kusiak Chantal, Thompson Gary A", "evidence": [ { "database": "UniProtKB", "id": "Q9LN77", "url": "https://www.uniprot.org/uniprotkb/Q9LN77" } ], "reference": [ { "type": "PubMed", "id": "12529520", "url": "https://glygen.org/publication/PubMed/12529520" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9LN77", "url": "https://www.uniprot.org/uniprotkb/Q9LN77" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LPK0-1", "uniprot_ac": "Q9LPK0", "uniprot_id": "Q9LPK0_ARATH", "mass": { "chemical_mass": 32361.0, "monoisotopic_mass": 32361.0 }, "refseq": {}, "gene_names": [ { "name": "F6N18.2", "type": "synonym", "evidence": [ { "id": "Q9LPK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0" } ] }, { "name": "F6N18_2", "type": "synonym", "evidence": [ { "id": "Q9LPK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0" } ] } ], "protein_names": [ { "name": "Hydroxyproline-rich glycoprotein family protein", "type": "synonym", "evidence": [ { "id": "Q9LPK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { 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"categories": [ "Protein" ] }, { "id": "Q9LPK0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRTCWYYDQLGVNKIGKNIKKSPLPQPQGYSMSNNDFTSIVQQLTDSPSRESLPQPLPRNLLKPQQKIRPVGQIQINRPCVPPPVMAQPTHEFVARPPMHPLPHGSQPIISHGDQFGSNTAESSVSVYMRYRQSSLGDSGPNENQMQPSHDNQQQPQVEGQAQSHNHHSPRFNDSARNTPILPTPKFDGPPQQMHNNSLPSPRFNGRGILPTPTSQYRPQSPTAYRNLLSPRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPGTIPLPHASPFGVIPISSQRWRGY", "length": 291, "header": "tr|Q9LPK0-1|Q9LPK0_ARATH Isoform 1 of Hydroxyproline-rich glycoprotein family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LPK0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AUC0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0/entry#A0A1P8AUC0-1", "sequence": { "sequence": "MSNNDFTSIVQQLTDSPSRESLPQPLPRNLLKPQQKIRPVGQIQINRPCVPPPVMAQPTHEFVARPPMHPLPHGSQPIISHGDQFGSNTAESSVSVYMRYRQSSLGDSGPNENQMQPSHDNQQQPQVEGQAQSHNHHSPRFNDSARNTPILPTPKFDGPPQQMHNNSLPSPRFNGRGILPTPTSQYRPQSPTAYRNLLSPRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPGTIPLPHASPFGVIPISSQRWRGY", "length": 259, "header": "tr|A0A1P8AUC0-1|Q9LPK0_ARATH Computationally mapped isoform of Hydroxyproline-rich glycoprotein family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LPK0-1" }, "locus": { "chromosome": "1", "start_pos": 11795699, "end_pos": 11797140, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32610.3", "url": "https://www.ensemblgenomes.org/id/AT1G32610.3" }, { "database": "Ensembl Peptide", "id": "AT1G32610.3", "url": "https://www.ensemblgenomes.org/id/AT1G32610.3" } ] } }, { "isoform_ac": "Q9LPK0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK0/entry#Q9LPK0-1", "sequence": { "sequence": "MDRTCWYYDQLGVNKIGKNIKKSPLPQPQGYSMSNNDFTSIVQQLTDSPSRESLPQPLPRNLLKPQQKIRPVGQIQINRPCVPPPVMAQPTHEFVARPPMHPLPHGSQPIISHGDQFGSNTAESSVSVYMRYRQSSLGDSGPNENQMQPSHDNQQQPQVEGQAQSHNHHSPRFNDSARNTPILPTPKFDGPPQQMHNNSLPSPRFNGRGILPTPTSQYRPQSPTAYRNLLSPRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPGTIPLPHASPFGVIPISSQRWRGY", "length": 291, "header": "tr|Q9LPK0-1|Q9LPK0_ARATH Isoform 1 of Hydroxyproline-rich glycoprotein family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LPK0-1" }, "locus": { "chromosome": "1", "start_pos": 11795699, "end_pos": 11797221, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32610.2", "url": "https://www.ensemblgenomes.org/id/AT1G32610.2" }, { "database": "Ensembl Peptide", "id": "AT1G32610.2", "url": "https://www.ensemblgenomes.org/id/AT1G32610.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], 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"https://www.uniprot.org/uniprotkb/Q9LPS9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LPS9", "locus": {} } ], "crossref": [ { "id": "Q9LPS9", "url": "https://alphafold.ebi.ac.uk/entry/Q9LPS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G50590", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G50590", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd02247", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02247", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02909", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02909", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "841481", "url": "https://www.ncbi.nlm.nih.gov/gene/841481", "database": "GeneID", "categories": [ "Genome 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"Organism-specific" ] }, { "id": "A0A1P8AVL1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AVL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AVL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPS9", "url": "https://www.uniprot.org/uniprotkb/Q9LPS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPS9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPISEKSSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPAGFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQAASALGLF", "length": 310, "header": "sp|Q9LPS9-1|PRNL1_ARATH Isoform 1 of Pirin-like protein At1g50590 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LPS9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AVL1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPS9/entry#A0A1P8AVL1-1", "sequence": { "sequence": "MLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQAASALGLF", "length": 236, "header": "tr|A0A1P8AVL1-1|PRNL1_ARATH Computationally mapped isoform of Pirin-like protein At1g50590 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LPS9-1" }, "locus": { "chromosome": "1", "start_pos": 18732378, "end_pos": 18733326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50590.3", "url": "https://www.ensemblgenomes.org/id/AT1G50590.3" }, { "database": "Ensembl Peptide", "id": "AT1G50590.3", "url": "https://www.ensemblgenomes.org/id/AT1G50590.3" } ] } }, { "isoform_ac": "Q9LPS9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPS9/entry#Q9LPS9-1", "sequence": { "sequence": "MPISEKSSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPAGFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQAASALGLF", "length": 310, "header": "sp|Q9LPS9-1|PRNL1_ARATH Isoform 1 of Pirin-like protein At1g50590 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LPS9-1" }, "locus": { "chromosome": "1", "start_pos": 18732378, "end_pos": 18734199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50590.1", "url": "https://www.ensemblgenomes.org/id/AT1G50590.1" }, { "database": "Ensembl Peptide", "id": "AT1G50590.1", "url": "https://www.ensemblgenomes.org/id/AT1G50590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, 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"Q9LQ46-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQ46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTMSDLSVDLVGEILSRVPLTSLSAVRCTCKSWNTLSKHQIFGKAELAATKQFLGFTVMDYKVCSLRFDLQGIRNDGDDFVDHGEVYDVFHSDGLLLCVTKDHWRLVVWNPYLGQIRWIRARKQFGYSNMFSLGYNNSNRNHKIIEVSYVYDKTACPQYSEIYDFNSSSWRLVEINPVWFLHSDRVSLKGNTYFFAQDLLKDAKIENYLLCFDFTAERFGPHLPLPVHSYDDVTLSCVRQEQLALLYGNNETDDSLEIWITNQIDPNAVSWSIFLKVDIKPLIGFPKDFDPGSFFIDEEKKVVVVYDLDGHLYSTKKNCAYQRLYIIGEDGYFTSVKIKCSDSPEFSAYAPSLVTYKPTNYAK", "length": 364, "header": "sp|Q9LQ46-1|FB67_ARATH Isoform 1 of F-box protein At1g59680 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9LQ46-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AWI0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQ46/entry#A0A1P8AWI0-1", "sequence": { "sequence": "MTTMSDLSVDLVGEILSRVPLTSLSAVRCTCKSWNTLSKHQIFGKAELAATKQFLGFTVMDYKVCSLRFDLQGIRNDGDDFVDHGKSGLKIRNKAVKKNHGNGLHRKTGRCHIVERSELNQVEVYDVFHSDGLLLCVTKDHWRLVHVHNTQKSMILTPVHGGWLRSIPSAERFGPHLPLPVHSYDDVTLSCVRQEQLALLYGNNETDDSLEIWITNQIDPNAVSWSIFLKVDIKPLIGFPKDFDPGSFFIDEEKKVVVVYDLDGHLYSTKKNCAYQRLYIIGEDGYFTSVKIKCSDSPEFSAYAPSLVTYKPTNYAK", "length": 317, "header": "tr|A0A1P8AWI0-1|FB67_ARATH Computationally mapped isoform of F-box protein At1g59680 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LQ46-1" }, "locus": { "chromosome": "1", "start_pos": 21933012, "end_pos": 21934216, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G59680.2", "url": "https://www.ensemblgenomes.org/id/AT1G59680.2" }, { "database": "Ensembl Peptide", "id": "AT1G59680.2", "url": "https://www.ensemblgenomes.org/id/AT1G59680.2" } ] } }, { "isoform_ac": "Q9LQ46-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQ46/entry#Q9LQ46-1", "sequence": { "sequence": "MTTMSDLSVDLVGEILSRVPLTSLSAVRCTCKSWNTLSKHQIFGKAELAATKQFLGFTVMDYKVCSLRFDLQGIRNDGDDFVDHGEVYDVFHSDGLLLCVTKDHWRLVVWNPYLGQIRWIRARKQFGYSNMFSLGYNNSNRNHKIIEVSYVYDKTACPQYSEIYDFNSSSWRLVEINPVWFLHSDRVSLKGNTYFFAQDLLKDAKIENYLLCFDFTAERFGPHLPLPVHSYDDVTLSCVRQEQLALLYGNNETDDSLEIWITNQIDPNAVSWSIFLKVDIKPLIGFPKDFDPGSFFIDEEKKVVVVYDLDGHLYSTKKNCAYQRLYIIGEDGYFTSVKIKCSDSPEFSAYAPSLVTYKPTNYAK", "length": 364, "header": "sp|Q9LQ46-1|FB67_ARATH Isoform 1 of F-box protein At1g59680 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9LQ46-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AWI0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWI0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AWI0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWI0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G59680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G59680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "megagametogenesis", "id": "GO:0009561", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009561", "evidence": [ { "database": "UniProtKB", "id": "Q9LQ46", "url": "https://www.uniprot.org/uniprotkb/Q9LQ46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LQ46-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9LQ46-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9LQ46" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 251, "end_pos": 253 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LPK4-1", "uniprot_ac": "Q9LPK4", "uniprot_id": "Q9LPK4_ARATH", "mass": { "chemical_mass": 46318.0, "monoisotopic_mass": 46318.0 }, "refseq": { "ac": "NP_001185053", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185053" }, "gene_names": [ { "name": "F24J8.19", "type": "synonym", "evidence": [ { "id": "NP_001185053", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185053" }, { "id": "Q9LPK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4" } ] }, { "name": "F24J8_19", "type": "synonym", "evidence": [ { "id": "NP_001185053", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185053" }, { "id": "Q9LPK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9LPK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001185053", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185053" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LPK4", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4", "locus": {} } ], "crossref": [ { "id": "AT1G21560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G21560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838757", "url": "https://www.ncbi.nlm.nih.gov/gene/838757", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LPK4", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LPK4*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT1G21560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G21560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HECSKIT", "url": "https://omabrowser.org/oma/group/HECSKIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34194", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34194", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34194:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34194:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001185053", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185053", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G21560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G21560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AWJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPK4", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPK4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTLMNSAATMRAVKKEFIVIDLDADKDEDVRCGKVKEEYMMDAGKTNPSNIQQVVSAVASDDDGDDDDDWGTKMDYQYIKLLDSFREDGSLNLSDNPLRSIRYEVDNGGYDKREFKAVFTNKRSREDRNTIRVTKKNVEPKPPHVQASTEKVTKEAGFKLRRRESLVSQKSVEAMLITSHVRRNSQHNNGDASEKENFEDDIVLDEVYRSYLKRLVENSKSSRTNPEKEIKVKCEEDHTVSLSDSDSDIIVVGDCPFLEEEDSPFVPSKSYKVIDLDEESSDQRNSWFRREIMNVLKQPYTVTELKELHKEASVHGVSSRHIELRDGTEFSFPTNKKKPSYLDRYPDFKKQYLDSLREKDERKALNLLRGFIFYITNVVRDDAFKPWLDQECLKIRCV", "length": 399, "header": "tr|Q9LPK4-1|Q9LPK4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPK4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AWJ6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4/entry#A0A1P8AWJ6-1", "sequence": { "sequence": "MRTLMNSAATMRAVKKEFIVIDLDADKDEDVRCGKVKEEYMMDAGKTNPSNIQQVVSAVASDDDGDDDDDWGTKMDYQYIKLLDSFREDGSLNLSDNPLRSIRYEVDNGGYDKREFKAVFTNKRSREDRNTIRVTKKNVEPKPPHVQASTEKVTKEAGFKLRRRESLVSQKSVEAMLITSHVRRNSQHNNGDASEKENFEDDIVLDEVYRSYLKRLVENSKSSRTNPEKEIKVKCEEDHTVSLSDSDSDIIVVGDCPFLEEEDSPFVPSKSYKVIDLDEESSDQRNSWFRREIMNVLKQPYTVTELKELHKEASVHGVSSRHIELRDGTEFSFPTNKKKPSYLDRYPGTLPGGVLCLAYLLETIS", "length": 365, "header": "tr|A0A1P8AWJ6-1|Q9LPK4_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPK4-1" }, "locus": { "chromosome": "1", "start_pos": 7554771, "end_pos": 7557112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G21560.4", "url": "https://www.ensemblgenomes.org/id/AT1G21560.4" }, { "database": "Ensembl Peptide", "id": "AT1G21560.4", "url": "https://www.ensemblgenomes.org/id/AT1G21560.4" } ] } }, { "isoform_ac": "Q9LPK4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPK4/entry#Q9LPK4-1", "sequence": { "sequence": "MRTLMNSAATMRAVKKEFIVIDLDADKDEDVRCGKVKEEYMMDAGKTNPSNIQQVVSAVASDDDGDDDDDWGTKMDYQYIKLLDSFREDGSLNLSDNPLRSIRYEVDNGGYDKREFKAVFTNKRSREDRNTIRVTKKNVEPKPPHVQASTEKVTKEAGFKLRRRESLVSQKSVEAMLITSHVRRNSQHNNGDASEKENFEDDIVLDEVYRSYLKRLVENSKSSRTNPEKEIKVKCEEDHTVSLSDSDSDIIVVGDCPFLEEEDSPFVPSKSYKVIDLDEESSDQRNSWFRREIMNVLKQPYTVTELKELHKEASVHGVSSRHIELRDGTEFSFPTNKKKPSYLDRYPDFKKQYLDSLREKDERKALNLLRGFIFYITNVVRDDAFKPWLDQECLKIRCV", "length": 399, "header": "tr|Q9LPK4-1|Q9LPK4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPK4-1" }, "locus": { "chromosome": "1", "start_pos": 7554771, "end_pos": 7557112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G21560.6", "url": "https://www.ensemblgenomes.org/id/AT1G21560.6" }, { "database": "Ensembl Peptide", "id": "AT1G21560.6", "url": "https://www.ensemblgenomes.org/id/AT1G21560.6" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 121, "end_pos": 121, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LPK4" } ], "site_lbl": "Thr121" }, { "start_pos": 169, "end_pos": 169, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LPK4" } ], "site_lbl": "Ser169" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWJ6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", 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E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HQS0", "url": "https://www.uniprot.org/uniprotkb/F4HQS0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FX61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX61" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FX61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX61" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FX61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX61" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FX61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX61" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HQS0", "url": "https://www.uniprot.org/uniprotkb/F4HQS0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2", "locus": {} } ], "crossref": [ { "id": "AT1G67660", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G67660", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22343", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22343", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "843091", "url": 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Pathway" ] }, { "id": "F4HTP8", "url": "https://www.orthodb.org/?gene=F4HTP8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FXD2", "url": "https://www.orthodb.org/?gene=Q9FXD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46609", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46609", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46609:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46609:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09588", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09588", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G67660", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G67660", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HTP8", "url": "https://www.uniprot.org/uniprotkb/F4HTP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HTP8-1", "url": "https://www.uniprot.org/uniprotkb/F4HTP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVSNMIPLTFVTVCVCRVLKPNKVALNSMILSAMRTCSISGFHTHLPKSSGSVSSRKRFSSTALSLITQTISPFAHPRSSVIVSSLLSPSDIPQKSEEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMESSAIERYKRIMGCEVGTMGFAIHSNEEFHWLGASPDGILDCFGILEVKCPYNKGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLREFWWESVIPAREALLLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIADHVEFF", "length": 334, "header": "tr|Q9FXD2-1|Q9FXD2_ARATH Isoform 1 of Restriction endonuclease, type II-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXD2-1" }, "isoforms": [ { "isoform_ac": "F4HTP8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2/entry#F4HTP8-1", "sequence": { "sequence": "MILSAMRTCSISGFHTHLPKSSGSVSSRKRFSSTALSLITQTISPFAHPRSSVIVSSLLSPSDIPQKSEEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMESSAIERYKRIMGCEVGTMGFAIHSNEEFHWLGASPDGILDCFGILEVKCPYNKGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLREFWWESVIPAREALLLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIADHVEFF", "length": 305, "header": "tr|F4HTP8-1|Q9FXD2_ARATH Computationally mapped isoform of Restriction endonuclease, type II-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXD2-1" }, "locus": { "chromosome": "1", "start_pos": 25363504, "end_pos": 25365314, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G67660.2", "url": "https://www.ensemblgenomes.org/id/AT1G67660.2" }, { "database": "Ensembl Peptide", "id": "AT1G67660.2", "url": "https://www.ensemblgenomes.org/id/AT1G67660.2" } ] } }, { "isoform_ac": "Q9FXD2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2/entry#Q9FXD2-1", "sequence": { "sequence": "MFVSNMIPLTFVTVCVCRVLKPNKVALNSMILSAMRTCSISGFHTHLPKSSGSVSSRKRFSSTALSLITQTISPFAHPRSSVIVSSLLSPSDIPQKSEEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMESSAIERYKRIMGCEVGTMGFAIHSNEEFHWLGASPDGILDCFGILEVKCPYNKGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLREFWWESVIPAREALLLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIADHVEFF", "length": 334, "header": "tr|Q9FXD2-1|Q9FXD2_ARATH Isoform 1 of Restriction endonuclease, type II-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXD2-1" }, "locus": { "chromosome": "1", "start_pos": 25363666, "end_pos": 25365218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G67660.3", "url": "https://www.ensemblgenomes.org/id/AT1G67660.3" }, { "database": "Ensembl Peptide", "id": "AT1G67660.3", "url": "https://www.ensemblgenomes.org/id/AT1G67660.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HTP8", "url": "https://www.uniprot.org/uniprotkb/F4HTP8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HTP8", "url": "https://www.uniprot.org/uniprotkb/F4HTP8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G67660", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G67660", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "Q9FXD2", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FXD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXD2" }, { "id": "PF09588", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09588" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "YqaJ viral recombinase", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 236, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 249, "end_pos": 251 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LMM4-1", "uniprot_ac": "Q9LMM4", "uniprot_id": "Q9LMM4_ARATH", "mass": { "chemical_mass": 58780.0, "monoisotopic_mass": 58780.0 }, "refseq": {}, "gene_names": [ { "name": "F22L4.11", "type": "synonym", "evidence": [ { "id": "Q9LMM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4" } ] }, { "name": "F22L4_11", "type": "synonym", "evidence": [ { "id": "Q9LMM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4" } ] } ], "protein_names": [ { "name": "Transferring glycosyl group transferase (DUF604)", "type": "synonym", "evidence": [ { "id": "Q9LMM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMM4", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4", "locus": {} } ], "crossref": [ { "id": "AT1G01570", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G01570", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "837183", "url": "https://www.ncbi.nlm.nih.gov/gene/837183", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006740", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006740", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G01570", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G01570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQFDLFG", "url": "https://omabrowser.org/oma/group/HQFDLFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10811", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10811", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G01570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G01570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HU33", "url": "https://www.uniprot.org/uniprotkb/F4HU33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HU33-1", "url": "https://www.uniprot.org/uniprotkb/F4HU33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMM4", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMM4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDDKKDQKQLSSYLKAKNFSCDSHFSFYWLMSRLIFLILAILFSLQFVFYPLNFISSSSQPLIKFSVSPVVSGSGSVHEPDQTELKHVVFGIAASAKFWKHRKDYVKLWWKPNGEMNGVVWLDQHINQNDNVSKTLPPIRISSDTSRFQYRYPKGLRSAIRITRIVSETVRLLNGTELEKNVRWIVMGDDDTVFFPENLVKVLRKYDHNQFYYIGSSSESHIQNLKFSYGMAYGGGGFAISYPLAKALEKMQDRCIQRYSELYGSDDRIHACMSELGVPLTKEVGFHQIDLYGKLLGLLSAHPLAPLVSIHHLDLVDPVFPNMGRVNAMRRFMVPAKLDSPSLAQQSICYDADHRWTVSVSWGYTVQIIRGVLSAREMVIPTRTFIDWYKQADERSYAFNTRPIAKSACQRPRVYYLSNALPDLALRRTASEYVRWYDMWEPECDWDMSDPSEFERVIVYKKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAEFLVK", "length": 509, "header": "tr|Q9LMM4-1|Q9LMM4_ARATH Isoform 1 of Transferring glycosyl group transferase (DUF604) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMM4-1" }, "isoforms": [ { "isoform_ac": "F4HU33-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4/entry#F4HU33-1", "sequence": { "sequence": "MSRLIFLILAILFSLQFVFYPLNFISSSSQPLIKFSVSPVVSGSGSVHEPDQTELKHVVFGIAASAKFWKHRKDYVKLWWKPNGEMNGVVWLDQHINQNDNVSKTLPPIRISSDTSRFQYRYPKGLRSAIRITRIVSETVRLLNGTELEKNVRWIVMGDDDTVFFPENLVKVLRKYDHNQFYYIGSSSESHIQNLKFSYGMAYGGGGFAISYPLAKALEKMQDRCIQRYSELYGSDDRIHACMSELGVPLTKEVGFHQIDLYGKLLGLLSAHPLAPLVSIHHLDLVDPVFPNMGRVNAMRRFMVPAKLDSPSLAQQSICYDADHRWTVSVSWGYTVQIIRGVLSAREMVIPTRTFIDWYKQADERSYAFNTRPIAKSACQRPRVYYLSNALPDLALRRTASEYVRWYDMWEPECDWDMSDPSEFERVIVYKKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAEFLVK", "length": 478, "header": "tr|F4HU33-1|Q9LMM4_ARATH Computationally mapped isoform of Transferring glycosyl group transferase (DUF604) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMM4-1" }, "locus": { "chromosome": "1", "start_pos": 205176, "end_pos": 207435, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G01570.1", "url": "https://www.ensemblgenomes.org/id/AT1G01570.1" }, { "database": "Ensembl Peptide", "id": "AT1G01570.1", "url": "https://www.ensemblgenomes.org/id/AT1G01570.1" } ] } }, { "isoform_ac": "Q9LMM4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMM4/entry#Q9LMM4-1", "sequence": { "sequence": "MGDDKKDQKQLSSYLKAKNFSCDSHFSFYWLMSRLIFLILAILFSLQFVFYPLNFISSSSQPLIKFSVSPVVSGSGSVHEPDQTELKHVVFGIAASAKFWKHRKDYVKLWWKPNGEMNGVVWLDQHINQNDNVSKTLPPIRISSDTSRFQYRYPKGLRSAIRITRIVSETVRLLNGTELEKNVRWIVMGDDDTVFFPENLVKVLRKYDHNQFYYIGSSSESHIQNLKFSYGMAYGGGGFAISYPLAKALEKMQDRCIQRYSELYGSDDRIHACMSELGVPLTKEVGFHQIDLYGKLLGLLSAHPLAPLVSIHHLDLVDPVFPNMGRVNAMRRFMVPAKLDSPSLAQQSICYDADHRWTVSVSWGYTVQIIRGVLSAREMVIPTRTFIDWYKQADERSYAFNTRPIAKSACQRPRVYYLSNALPDLALRRTASEYVRWYDMWEPECDWDMSDPSEFERVIVYKKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAEFLVK", "length": 509, "header": "tr|Q9LMM4-1|Q9LMM4_ARATH Isoform 1 of Transferring glycosyl group transferase (DUF604) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMM4-1" }, "locus": { "chromosome": "1", "start_pos": 204935, "end_pos": 207642, "strand": "+", "evidence": [ { "database": "Ensembl 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"count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LP68-1", "uniprot_ac": "Q9LP68", "uniprot_id": "Q9LP68_ARATH", "mass": { "chemical_mass": 72387.0, "monoisotopic_mass": 72387.0 }, "refseq": { "ac": "NP_175289", "name": "uncharacterized protein", "summary": "", "url": 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTHFWNI", "url": "https://omabrowser.org/oma/group/KTHFWNI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35491:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35491:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_175289", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G48560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G48560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HYH8", "url": "https://www.uniprot.org/uniprotkb/F4HYH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HYH8-1", "url": "https://www.uniprot.org/uniprotkb/F4HYH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LP68", "url": "https://www.uniprot.org/uniprotkb/Q9LP68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LP68-1", "url": "https://www.uniprot.org/uniprotkb/Q9LP68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWKKGELVWVSVSFSNTWIPGRIIDPSESLGVLVSFFGLMDPRYVPKPFLRSFDRDFKTLISDSRWIRRFVNRALRAYFWNISFGLWCSCQPRIDSPYLDRENSLPRFHATSDSALGFVRDMAISIRMPLWRLAETNSSSAQILSFRRYIVDFKRSESVYEETRASAELNDRSEESGWCLEYSKKMDLCSMFPETADADIDNSRDLSLRDPLPKDLPCCSSEQHVDKVVQICTWNTRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKSKECCQVEQNICLLNSEPSIEDMIEEDTTSVAASRVDVSEALPDVMIETHDDIIGLVDGPVTSTNELSPLLDSSNDKAYLAKPVSFVVPGACHTLACSVRKKYASPRNKLDSSIISAKTLNEQSLGRNSLNGTRENCSEYTLESHIVEVGQVSLPSTGTSNKEFSSDDAGAPAEQLQDLEAGTTVENQTRSVDNVRSIGVKRKASRDKASARYSKRKKKAGQQSISTDKSLNLHLMKDMRLANPKCLRMKFLCRHGDLPSKAELLKRFSVFGKIDASRTDVNPGESSAKVVFMQSIDAVTAYQFARSKKFRLGKSKVTYRLEPFEEDNEVKKVPLPQKPQKSAPSPKSCLKEHGLVDKEEGRRNMKVKFQMETNS", "length": 643, "header": "tr|Q9LP68-1|Q9LP68_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LP68-1" }, "isoforms": [ { "isoform_ac": "F4HYH8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LP68/entry#F4HYH8-1", "sequence": { "sequence": "MWKKGELVWVSVSFSNTWIPGRIIDPSESLGVLVSFFGLMDPRYVPKPFLRSFDRDFKTLISDSRWIRRFVNRALRAYFWNISFGLWCSCQPRIDSPYLDRENSLPRFHATSDSALGFVRDMAISIRMPLWRLAETNSSSAQILSFRRYIVDFKRSESVYEETRARTSKFECESICSVYNRTRRSAELNDRSEESGWCLEYSKKMDLCSMFPETADADIDNSRDLSLRDPLPKDLPCCSSEQHVDKVVQICTWNTRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKSKECCQVEQNICLLNSEPSIEDMIEEDTTSVAASRVDVSEALPDVMIETHDDIIGLVDGPVTSTNELSPLLDSSNDKAYLAKPVSFVVPGACHTLACSVRKKYASPRNKLDSSIISAKTLNEQSLGRNSLNGTRENCSEYTLESHIVEVGQVSLPSTGTSNKEFSSDDAGAPAEQLQDLEAGTTVENQTRSVDNVRSIGVKRKASRDKASARYSKRKKKAGQQSISTDKSLNLHLMKDMRLANPKCLRMKFLCRHGDLPSKAELLKRFSVFGKIDASRTDVNPGESSAKVVFMQSIDAVTAYQFARSKKFRLGKSKVTYRLEPFEEDNEVKKVPLPQKPQKSAPSPKSCLKEHGLVDKEEGRRNMKVKFQMETNS", "length": 662, "header": "tr|F4HYH8-1|Q9LP68_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LP68-1" }, "locus": { "chromosome": "1", "start_pos": 17952859, "end_pos": 17955273, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48560.2", "url": "https://www.ensemblgenomes.org/id/AT1G48560.2" }, { "database": "Ensembl Peptide", "id": "AT1G48560.2", "url": "https://www.ensemblgenomes.org/id/AT1G48560.2" } ] } }, { "isoform_ac": "Q9LP68-1", "url": "https://www.uniprot.org/uniprotkb/Q9LP68/entry#Q9LP68-1", "sequence": { "sequence": "MWKKGELVWVSVSFSNTWIPGRIIDPSESLGVLVSFFGLMDPRYVPKPFLRSFDRDFKTLISDSRWIRRFVNRALRAYFWNISFGLWCSCQPRIDSPYLDRENSLPRFHATSDSALGFVRDMAISIRMPLWRLAETNSSSAQILSFRRYIVDFKRSESVYEETRASAELNDRSEESGWCLEYSKKMDLCSMFPETADADIDNSRDLSLRDPLPKDLPCCSSEQHVDKVVQICTWNTRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKSKECCQVEQNICLLNSEPSIEDMIEEDTTSVAASRVDVSEALPDVMIETHDDIIGLVDGPVTSTNELSPLLDSSNDKAYLAKPVSFVVPGACHTLACSVRKKYASPRNKLDSSIISAKTLNEQSLGRNSLNGTRENCSEYTLESHIVEVGQVSLPSTGTSNKEFSSDDAGAPAEQLQDLEAGTTVENQTRSVDNVRSIGVKRKASRDKASARYSKRKKKAGQQSISTDKSLNLHLMKDMRLANPKCLRMKFLCRHGDLPSKAELLKRFSVFGKIDASRTDVNPGESSAKVVFMQSIDAVTAYQFARSKKFRLGKSKVTYRLEPFEEDNEVKKVPLPQKPQKSAPSPKSCLKEHGLVDKEEGRRNMKVKFQMETNS", "length": 643, "header": "tr|Q9LP68-1|Q9LP68_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LP68-1" }, "locus": { "chromosome": "1", "start_pos": 17952854, "end_pos": 17955509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G48560.1", "url": "https://www.ensemblgenomes.org/id/AT1G48560.1" }, { "database": "Ensembl Peptide", "id": "AT1G48560.1", "url": "https://www.ensemblgenomes.org/id/AT1G48560.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HYH8", "url": "https://www.uniprot.org/uniprotkb/F4HYH8" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HYH8", "url": "https://www.uniprot.org/uniprotkb/F4HYH8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G48560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G48560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LP68", "url": "https://www.uniprot.org/uniprotkb/Q9LP68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 404, "end_pos": 406 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LQB2-1", "uniprot_ac": "Q9LQB2", "uniprot_id": "Q9LQB2_ARATH", "mass": { "chemical_mass": 24955.0, "monoisotopic_mass": 24955.0 }, "refseq": {}, "gene_names": [ { "name": "F4N2.5", "type": "synonym", "evidence": [ { "id": "Q9LQB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2" } ] }, { "name": "F4N2_5", "type": "synonym", "evidence": [ { "id": "Q9LQB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2" } ] } ], "protein_names": [ { "name": "Adenine nucleotide alpha hydrolases-like superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LQB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G69080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G69080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I0J2", "url": "https://www.uniprot.org/uniprotkb/F4I0J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I0J2-1", "url": "https://www.uniprot.org/uniprotkb/F4I0J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LQB2", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LQB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKKGEGFFVSRLRANVRVQPPTTTSQHGCSHEPPTTSIEIKGRRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDKPTTSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKKQHATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLLA", "length": 223, "header": "tr|Q9LQB2-1|Q9LQB2_ARATH Isoform 1 of Adenine nucleotide alpha hydrolases-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LQB2-1" }, "isoforms": [ { "isoform_ac": "F4I0J2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2/entry#F4I0J2-1", "sequence": { "sequence": "MGKKGEGFFVSRLRANVRVQPPTTTSQHGCSHEPPTTSIEIKGRRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDKPTTSRADKKVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKKQHATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLLA", "length": 209, "header": "tr|F4I0J2-1|Q9LQB2_ARATH Computationally mapped isoform of Adenine nucleotide alpha hydrolases-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LQB2-1" }, "locus": { "chromosome": "1", "start_pos": 25971915, "end_pos": 25973505, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G69080.2", "url": "https://www.ensemblgenomes.org/id/AT1G69080.2" }, { "database": "Ensembl Peptide", "id": "AT1G69080.2", "url": "https://www.ensemblgenomes.org/id/AT1G69080.2" } ] } }, { "isoform_ac": "Q9LQB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2/entry#Q9LQB2-1", "sequence": { "sequence": "MGKKGEGFFVSRLRANVRVQPPTTTSQHGCSHEPPTTSIEIKGRRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDKPTTSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKKQHATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLLA", "length": 223, "header": "tr|Q9LQB2-1|Q9LQB2_ARATH Isoform 1 of Adenine nucleotide alpha hydrolases-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LQB2-1" }, "locus": { "chromosome": "1", "start_pos": 25971926, "end_pos": 25973505, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G69080.1", "url": "https://www.ensemblgenomes.org/id/AT1G69080.1" }, { "database": "Ensembl Peptide", "id": "AT1G69080.1", "url": "https://www.ensemblgenomes.org/id/AT1G69080.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I0J2", "url": "https://www.uniprot.org/uniprotkb/F4I0J2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I0J2", "url": "https://www.uniprot.org/uniprotkb/F4I0J2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G69080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G69080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9LQB2", "url": "https://www.uniprot.org/uniprotkb/Q9LQB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LQB2", "database": "UniProtKB", "url": 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"https://www.uniprot.org/uniprotkb/Q9LM16", "locus": {} } ], "crossref": [ { "id": "AT1G22200", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G22200", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838825", "url": "https://www.ncbi.nlm.nih.gov/gene/838825", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G22200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPTHGMY", "url": "https://omabrowser.org/oma/group/GPTHGMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I1A5", "url": "https://www.orthodb.org/?gene=F4I1A5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LM16", "url": "https://www.orthodb.org/?gene=Q9LM16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10984:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10984:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13850", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13850", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G22200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G22200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I1A5", "url": "https://www.uniprot.org/uniprotkb/F4I1A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I1A5-1", "url": "https://www.uniprot.org/uniprotkb/F4I1A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LM16", "url": "https://www.uniprot.org/uniprotkb/Q9LM16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LM16-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLRVDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVIEAKQDGIGHTKIEKPLQKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKKGWALSDPESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFHDMLLFQQGNYNISHKVNRLAFGDFFPGVVNPLDGVQWNQGKQSGVYQYFIKVVPSIYTDVHQNTIQSNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQHVEFLHFLTNVCAIVGGIFTVSGIVDSFIYHGQRAIKKKMEIGKFN", "length": 386, "header": "tr|Q9LM16-1|Q9LM16_ARATH Isoform 1 of Endoplasmic reticulum vesicle transporter protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LM16-1" }, "isoforms": [ { "isoform_ac": "F4I1A5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM16/entry#F4I1A5-1", "sequence": { "sequence": "MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLRVDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVIEAKQDGIGHTKIEKPLQKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKKGWALSDPESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFHDMLLFQQGNYNISHKVNRLAFGDFFPGVVNPLDGVQWNQGKQSGVYQYFIKVVPSIYTDVHQNTIQSNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVCDI", "length": 338, "header": "tr|F4I1A5-1|Q9LM16_ARATH Computationally mapped isoform of Endoplasmic reticulum vesicle transporter protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LM16-1" }, "locus": { "chromosome": "1", "start_pos": 7837591, "end_pos": 7840788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22200.2", "url": "https://www.ensemblgenomes.org/id/AT1G22200.2" }, { "database": "Ensembl Peptide", "id": "AT1G22200.2", "url": "https://www.ensemblgenomes.org/id/AT1G22200.2" } ] } }, { "isoform_ac": "Q9LM16-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM16/entry#Q9LM16-1", "sequence": { "sequence": "MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLRVDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVIEAKQDGIGHTKIEKPLQKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKKGWALSDPESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFHDMLLFQQGNYNISHKVNRLAFGDFFPGVVNPLDGVQWNQGKQSGVYQYFIKVVPSIYTDVHQNTIQSNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQHVEFLHFLTNVCAIVGGIFTVSGIVDSFIYHGQRAIKKKMEIGKFN", "length": 386, "header": "tr|Q9LM16-1|Q9LM16_ARATH Isoform 1 of Endoplasmic reticulum vesicle transporter protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LM16-1" }, "locus": { "chromosome": "1", "start_pos": 7837563, "end_pos": 7840898, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22200.1", "url": "https://www.ensemblgenomes.org/id/AT1G22200.1" }, { "database": "Ensembl Peptide", "id": "AT1G22200.1", "url": "https://www.ensemblgenomes.org/id/AT1G22200.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": 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Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I1A5", "url": "https://www.uniprot.org/uniprotkb/F4I1A5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I1A5", "url": "https://www.uniprot.org/uniprotkb/F4I1A5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G22200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"Q9FXG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0/entry#names_and_taxonomy" } ] }, { "name": "double-stranded DNA-binding family protein", "type": "synonym", "evidence": [ { "id": "NP_564336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564336" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXG0", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "PDCD5", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0", "locus": {} } ], "crossref": [ { "id": "AT1G29850", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G29850", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839863", "url": "https://www.ncbi.nlm.nih.gov/gene/839863", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FXG0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FXG0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR002836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G29850", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29850", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MQYEMQK", "url": "https://omabrowser.org/oma/group/MQYEMQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I354", "url": "https://www.orthodb.org/?gene=F4I354", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4I355", "url": "https://www.orthodb.org/?gene=F4I355", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9FXG0", "url": "https://www.orthodb.org/?gene=Q9FXG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10840", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10840", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10840:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10840:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_564336", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564336", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G29850", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G29850", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I354", "url": "https://www.uniprot.org/uniprotkb/F4I354", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I354-1", "url": "https://www.uniprot.org/uniprotkb/F4I354-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I355", "url": "https://www.uniprot.org/uniprotkb/F4I355", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I355-1", "url": "https://www.uniprot.org/uniprotkb/F4I355-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXG0", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGVDDD", "length": 129, "header": "tr|Q9FXG0-1|Q9FXG0_ARATH Isoform 1 of Double-stranded DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN=PDCD5 PE=1 SV=1 CANONICAL=Q9FXG0-1" }, "isoforms": [ { "isoform_ac": "F4I354-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0/entry#F4I354-1", "sequence": { "sequence": "MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTVSTNGAVGWTTIRKEEEYYDVLCISMEISLLC", "length": 138, "header": "tr|F4I354-1|F4I354_ARATH Computationally mapped isoform of Double-stranded DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN=PDCD5 PE=1 SV=2 CANONICAL=Q9FXG0-1" }, "locus": { "chromosome": "1", "start_pos": 10447754, "end_pos": 10449946, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29850.3", "url": "https://www.ensemblgenomes.org/id/AT1G29850.3" }, { "database": "Ensembl Peptide", "id": "AT1G29850.3", "url": "https://www.ensemblgenomes.org/id/AT1G29850.3" } ] } }, { "isoform_ac": "F4I355-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0/entry#F4I355-1", "sequence": { "sequence": "MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGVDDD", "length": 130, "header": "tr|F4I355-1|Q9FXG0_ARATH Computationally mapped isoform of Double-stranded DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN=PDCD5 PE=1 SV=1 CANONICAL=Q9FXG0-1" }, "locus": { "chromosome": "1", "start_pos": 10447754, "end_pos": 10449946, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29850.2", "url": "https://www.ensemblgenomes.org/id/AT1G29850.2" }, { "database": "Ensembl Peptide", "id": "AT1G29850.2", "url": "https://www.ensemblgenomes.org/id/AT1G29850.2" } ] } }, { "isoform_ac": "Q9FXG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0/entry#Q9FXG0-1", "sequence": { "sequence": "MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGVDDD", "length": 129, "header": "tr|Q9FXG0-1|Q9FXG0_ARATH Isoform 1 of Double-stranded DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN=PDCD5 PE=1 SV=1 CANONICAL=Q9FXG0-1" }, "locus": { "chromosome": "1", "start_pos": 10447347, "end_pos": 10449969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29850.1", "url": "https://www.ensemblgenomes.org/id/AT1G29850.1" }, { "database": "Ensembl Peptide", "id": "AT1G29850.1", "url": "https://www.ensemblgenomes.org/id/AT1G29850.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I355", "url": "https://www.uniprot.org/uniprotkb/F4I355" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": 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Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4I355", "url": "https://www.uniprot.org/uniprotkb/F4I355" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I355", "url": "https://www.uniprot.org/uniprotkb/F4I355" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G29850", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29850", "resource": "KEGG Pathway" } ], "orthologs": 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"Q04773-1", "protein_name": "Uncharacterized protein YMR074C", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDPELQAIREARLAQLKNNSGGTNGDRNSGANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFERKDFSEDLNSFDKQNAKNDDDEDDDDFFD", "length": 145 }, "evidence": [ { "id": "Q9FXG0", "url": "https://omabrowser.org/oma/group/Q9FXG0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2HJH9-1", "protein_name": "Programmed cell death protein 5", "gene_name": "PDCD5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEQELEALRKQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDEDDDY", "length": 125 }, "evidence": [ { "id": "Q9FXG0", "url": "https://omabrowser.org/oma/group/Q9FXG0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54YS0-1", "protein_name": "DNA-binding protein DDB_G0278111", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSEKEIQQQLSQMQGQGFDPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLEQLSEKTKKTTITMKRRTIEDDD", "length": 117 }, "evidence": [ { "id": "Q9FXG0", "url": "https://omabrowser.org/oma/group/Q9FXG0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VUZ8-1", "protein_name": "Programmed cell death 5", "gene_name": "PDCD-5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQVLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSILESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGC", "length": 133 }, "evidence": [ { "id": "Q9FXG0", "url": "https://omabrowser.org/oma/group/Q9FXG0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit 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"Q9FXG0", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "Q9FXG0", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0" } ], "pmid": "" }, { "name": "programmed cell death", "id": "GO:0012501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012501", "evidence": [ { "database": "UniProtKB", "id": "Q9FXG0", "url": "https://www.uniprot.org/uniprotkb/Q9FXG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LPM6-1", "uniprot_ac": "Q9LPM6", "uniprot_id": "Q9LPM6_ARATH", "mass": { "chemical_mass": 17459.0, "monoisotopic_mass": 17459.0 }, "refseq": {}, "gene_names": [ { "name": "F2J10.7", "type": "synonym", "evidence": [ { "id": "Q9LPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6" } ] }, { "name": "F2J10_7", "type": "synonym", "evidence": [ { "id": "Q9LPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6" } ] } ], "protein_names": [ { "name": "CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Probably involved in the defense reaction of plants against pathogens.", "evidence": [ { "database": "UniProtKB", "id": "F4I4X9", "url": "https://www.uniprot.org/uniprotkb/F4I4X9#function" }, { "database": "UniProtKB", "id": "ARBA00003143", "url": "https://www.uniprot.org/uniprotkb/ARBA00003143#function" }, { "database": "UniProtKB", "id": "Q9LPM6", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LPM6", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6", "locus": {} } ], "crossref": [ { "id": "AT1G50050", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G50050", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05381", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05381", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "841429", "url": "https://www.ncbi.nlm.nih.gov/gene/841429", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G50050", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G50050", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VANIMWD", "url": "https://omabrowser.org/oma/group/VANIMWD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I4X9", "url": "https://www.orthodb.org/?gene=F4I4X9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LPM6", "url": "https://www.orthodb.org/?gene=Q9LPM6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G50050", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G50050", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I4X9", "url": "https://www.uniprot.org/uniprotkb/F4I4X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I4X9-1", "url": "https://www.uniprot.org/uniprotkb/F4I4X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPM6", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LPM6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTFKTPFLIIVAISFLVLATNAQNAQQDYLNTHNTARAQVGVANVVWDTVVAAYATNYANARKVDCSLTPSTGGSYGENLANGNNALFTGVAAVNLWVNEKPYYNYTANACIGAQQCKHYTQVVWSNSVKIGCARVLCNNGGYFVGCNYDASGNQAGQYPY", "length": 162, "header": "tr|Q9LPM6-1|Q9LPM6_ARATH Isoform 1 of CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPM6-1" }, "isoforms": [ { "isoform_ac": "F4I4X9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6/entry#F4I4X9-1", "sequence": { "sequence": "MNTFKTPFLIIVAISFLVLATNAQNAQQDYLNTHNTARAQVGVANVVWDTVVAAYATNYANARKVDCSLTPSTGGSYGENLANGNNALFTGVAAVNLWVNEKPYYNYTANACIGAQQCKHYTQVVWSNSVKIGCARVLCNNGGYFVGCNYDASAALKSRKITASVRQTRGLGASAACGQLRNKFQKSPSLATAEGEVIEARLRSEDFDNSCIGFAFTYICDACVGL", "length": 226, "header": "tr|F4I4X9-1|Q9LPM6_ARATH Computationally mapped isoform of CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPM6-1" }, "locus": { "chromosome": "1", "start_pos": 18546165, "end_pos": 18549046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50050.1", "url": "https://www.ensemblgenomes.org/id/AT1G50050.1" }, { "database": "Ensembl Peptide", "id": "AT1G50050.1", "url": "https://www.ensemblgenomes.org/id/AT1G50050.1" } ] } }, { "isoform_ac": "Q9LPM6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LPM6/entry#Q9LPM6-1", "sequence": { "sequence": "MNTFKTPFLIIVAISFLVLATNAQNAQQDYLNTHNTARAQVGVANVVWDTVVAAYATNYANARKVDCSLTPSTGGSYGENLANGNNALFTGVAAVNLWVNEKPYYNYTANACIGAQQCKHYTQVVWSNSVKIGCARVLCNNGGYFVGCNYDASGNQAGQYPY", "length": 162, "header": "tr|Q9LPM6-1|Q9LPM6_ARATH Isoform 1 of CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPM6-1" }, "locus": { "chromosome": "1", "start_pos": 18546086, "end_pos": 18547151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50050.2", "url": "https://www.ensemblgenomes.org/id/AT1G50050.2" }, { "database": "Ensembl Peptide", "id": "AT1G50050.2", "url": "https://www.ensemblgenomes.org/id/AT1G50050.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4X9", "url": "https://www.uniprot.org/uniprotkb/F4I4X9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I4X9", "url": "https://www.uniprot.org/uniprotkb/F4I4X9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G50050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G50050", 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9", "locus": {} } ], "crossref": [ { "id": "AT1G06420", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G06420", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "837153", "url": "https://www.ncbi.nlm.nih.gov/gene/837153", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G06420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G06420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QLQEHWI", "url": "https://omabrowser.org/oma/group/QLQEHWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "AT1G06420", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G06420", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IDM0", "url": "https://www.uniprot.org/uniprotkb/F4IDM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDM0-1", "url": "https://www.uniprot.org/uniprotkb/F4IDM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMH9", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LMH9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDHEKIDGKKKKKKSVALIPANYVSILQLQERWLKEKEKKQKEKDFVERGVKQQVDQRQRRREEEENVVKAMETKVKLEEHSLSGGVRMHCSVNRWKRDQVCVKKEEIKVSGIVSNKDEDGVDSREKKKKNPVKENTRRVFKSKGENAAKEVTQCWIKKKVEEERETSEVKGTARLISKQGYYQNKRHDWSSTRVIRATTSTMVWVKKGKKDGAVGENKV", "length": 221, "header": "tr|Q9LMH9-1|Q9LMH9_ARATH Isoform 1 of DNA ligase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMH9-1" }, "isoforms": [ { "isoform_ac": "F4IDM0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9/entry#F4IDM0-1", "sequence": { "sequence": "MEDHEKIDGKKKKKKKKKQKEKDFVERGVKQQVDQRQRRREEEENVVKAMETKVKLEEHSLSGGVRMHCSVNRWKRDQVCVKKEEIKVSGIVSNKDEDGVDSREKKKKNPVKENTRRVFKSKGENAAKEVTQCWIKKKVEEERETSEVKGTARLISKQGYYQNKRHDWSSTRVIRATTSTMVWVKKGKKDGAVGENKV", "length": 198, "header": "tr|F4IDM0-1|Q9LMH9_ARATH Computationally mapped isoform of DNA ligase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMH9-1" }, "locus": { "chromosome": "1", "start_pos": 1958923, "end_pos": 1959947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G06420.2", "url": "https://www.ensemblgenomes.org/id/AT1G06420.2" }, { "database": "Ensembl Peptide", "id": "AT1G06420.2", "url": "https://www.ensemblgenomes.org/id/AT1G06420.2" } ] } }, { "isoform_ac": "Q9LMH9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9/entry#Q9LMH9-1", "sequence": { "sequence": "MEDHEKIDGKKKKKKSVALIPANYVSILQLQERWLKEKEKKQKEKDFVERGVKQQVDQRQRRREEEENVVKAMETKVKLEEHSLSGGVRMHCSVNRWKRDQVCVKKEEIKVSGIVSNKDEDGVDSREKKKKNPVKENTRRVFKSKGENAAKEVTQCWIKKKVEEERETSEVKGTARLISKQGYYQNKRHDWSSTRVIRATTSTMVWVKKGKKDGAVGENKV", "length": 221, "header": "tr|Q9LMH9-1|Q9LMH9_ARATH Isoform 1 of DNA ligase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMH9-1" }, "locus": { "chromosome": "1", "start_pos": 1958878, "end_pos": 1960027, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G06420.1", "url": "https://www.ensemblgenomes.org/id/AT1G06420.1" }, { "database": "Ensembl Peptide", "id": "AT1G06420.1", "url": "https://www.ensemblgenomes.org/id/AT1G06420.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IDM0", "url": "https://www.uniprot.org/uniprotkb/F4IDM0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IDM0", "url": "https://www.uniprot.org/uniprotkb/F4IDM0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G06420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G06420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "Q9LMH9", "url": "https://www.uniprot.org/uniprotkb/Q9LMH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LK87-1", "uniprot_ac": "Q9LK87", "uniprot_id": "Q9LK87_ARATH", "mass": { "chemical_mass": 29470.0, "monoisotopic_mass": 29470.0 }, "refseq": { "ac": "NP_001325896", "name": "hypothetical protein (DUF1184)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325896" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9LK87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK87/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF1184)", "type": "synonym", "evidence": [ { "id": "NP_001325896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325896" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK87", "url": "https://www.uniprot.org/uniprotkb/Q9LK87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK87", "locus": {} } ], "crossref": [ { "id": "AT3G27900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G27900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822413", "url": "https://www.ncbi.nlm.nih.gov/gene/822413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G27900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MIYVFET", "url": "https://omabrowser.org/oma/group/MIYVFET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PF06683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001325896", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325896", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G27900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G27900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IXR7", "url": "https://www.uniprot.org/uniprotkb/F4IXR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXR7-1", "url": "https://www.uniprot.org/uniprotkb/F4IXR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK87", "url": "https://www.uniprot.org/uniprotkb/Q9LK87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK87-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSSDISIISEKMESMSMNHRVVRHCHNKKLQQSRYSPYSKENIISTIEKEMQKDEAIRLGVELSLFVAETMVLLSDNLRSMLLFCLWVLTNAECTYFTDPVVGRLHCVMLYVLETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDFEHCNQELKKLEETLRSAKDVSEANGFAREVIKSNILCLWKSLFETSQPKVINLKNRTLDMFKPLLNQAREITCSSLIASLHI", "length": 256, "header": "tr|Q9LK87-1|Q9LK87_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK87-1" }, "isoforms": [ { "isoform_ac": "F4IXR7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK87/entry#F4IXR7-1", "sequence": { "sequence": "MESMSMNHRVVRHCHNKKLQQSRYSPYSKENIISTIEKEMQKDEAIRLGVELSLFVAETMVLLSDNLRSMLLFCLWVLTNAECTYFTDPVVGRLHCVMLYVLETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDFEHCNQELKKLEETLRSAKDVSEANGFAREVIKSNILCLWKSLFETSQPKVINLKNRTLDMFKPLLNQAREITCSSLIASLHI", "length": 244, "header": "tr|F4IXR7-1|Q9LK87_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK87-1" }, "locus": { "chromosome": "3", "start_pos": 10352905, "end_pos": 10353639, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27900.1", "url": "https://www.ensemblgenomes.org/id/AT3G27900.1" }, { "database": "Ensembl Peptide", "id": "AT3G27900.1", "url": "https://www.ensemblgenomes.org/id/AT3G27900.1" } ] } }, { "isoform_ac": "Q9LK87-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK87/entry#Q9LK87-1", "sequence": { "sequence": "MNSSDISIISEKMESMSMNHRVVRHCHNKKLQQSRYSPYSKENIISTIEKEMQKDEAIRLGVELSLFVAETMVLLSDNLRSMLLFCLWVLTNAECTYFTDPVVGRLHCVMLYVLETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDFEHCNQELKKLEETLRSAKDVSEANGFAREVIKSNILCLWKSLFETSQPKVINLKNRTLDMFKPLLNQAREITCSSLIASLHI", "length": 256, "header": "tr|Q9LK87-1|Q9LK87_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK87-1" }, "locus": { "chromosome": "3", "start_pos": 10352462, "end_pos": 10353875, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27900.2", "url": "https://www.ensemblgenomes.org/id/AT3G27900.2" }, { "database": "Ensembl Peptide", "id": "AT3G27900.2", "url": "https://www.ensemblgenomes.org/id/AT3G27900.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", 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"https://www.ebi.ac.uk/interpro/entry/IPR052258", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G15400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDKIMPD", "url": "https://omabrowser.org/oma/group/EDKIMPD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR37612", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37612", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37612:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37612:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_188159", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188159", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G15400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G15400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IYR6", "url": "https://www.uniprot.org/uniprotkb/F4IYR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IYR6-1", "url": "https://www.uniprot.org/uniprotkb/F4IYR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LD84", "url": "https://www.uniprot.org/uniprotkb/Q9LD84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LD84-1", "url": "https://www.uniprot.org/uniprotkb/Q9LD84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQGHQGLCFGFIFLLCFFSSTFALRILKDLPMMEPRKLDLNHEMMPGMVMLQPDHEVQPEHTVKPGHTLQSMSGVSEHPEHTVKPGHTLQSMSGALEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMSGESKHPEHKVKPDQIMQTMASELEEEDPDHTSKPMGYGVGRGYGSGGSGVGYGVGIGSSGGSGFGEGIGSSGGNGFGEGIGSSGGSGFGEGIGSSGGSGFGEGIGSGGGTGIGIGEGIGSGSAQPNCGPVTGAPGSGFGEGIGQGSGPGEGIGIGIGQGGPSVVVPGTRIPPIVVPGAQIPGFVIPGITVPGYGTGCQTGGCNPNPPHYYIPPSCPHCPPFTSGQDKHMSDKGAMTEALAPTSPEIHV", "length": 416, "header": "tr|Q9LD84-1|Q9LD84_ARATH Isoform 1 of Anther 20 OS=Arabidopsis thaliana OX=3702 GN=ATA20 PE=4 SV=1 CANONICAL=Q9LD84-1" }, "isoforms": [ { "isoform_ac": "F4IYR6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LD84/entry#F4IYR6-1", "sequence": { "sequence": "MAQGHQGLCFGFIFLLCFFSSTFALRILKDLPMMEPRKLDLNHEMMPGMVMLQPDHEVQPEHTVKPGHTLQSMSGVSEHPEHTVKPGHTLQSMSGALEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMSGESKHPEHKVKPDQIMQTMASELEEEDPDHTSKPMGYGVGRGYGSGGSGVGYGVGIGSSGGSGFGEGIGSSGGNGFGEGIGSSGGSGFGEGIGSSGGSGFGEGIGSGGGTGIGIGEGIGSGSAQPNCGPVTGAPGSGFGEGIGQGSGPGEGIGIGIGQGGPSVVVPGTRIPPIVVPGAQIPGFVIPGITVPGYGTGCQTGGCNPNPPHYYIPPSCPHCPPFTSGQDKHMSDKGAMTEALAPTSPEIHV", "length": 398, "header": "tr|F4IYR6-1|Q9LD84_ARATH Computationally mapped isoform of Anther 20 OS=Arabidopsis thaliana OX=3702 GN=ATA20 PE=4 SV=2 CANONICAL=Q9LD84-1" }, "locus": { "chromosome": "3", "start_pos": 5201644, "end_pos": 5203197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15400.2", "url": "https://www.ensemblgenomes.org/id/AT3G15400.2" }, { "database": "Ensembl Peptide", "id": "AT3G15400.2", "url": "https://www.ensemblgenomes.org/id/AT3G15400.2" } ] } }, { "isoform_ac": "Q9LD84-1", "url": "https://www.uniprot.org/uniprotkb/Q9LD84/entry#Q9LD84-1", "sequence": { "sequence": "MAQGHQGLCFGFIFLLCFFSSTFALRILKDLPMMEPRKLDLNHEMMPGMVMLQPDHEVQPEHTVKPGHTLQSMSGVSEHPEHTVKPGHTLQSMSGALEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEKPDHKLQSMSGESKHPEHKVKPDQIMQTMASELEEEDPDHTSKPMGYGVGRGYGSGGSGVGYGVGIGSSGGSGFGEGIGSSGGNGFGEGIGSSGGSGFGEGIGSSGGSGFGEGIGSGGGTGIGIGEGIGSGSAQPNCGPVTGAPGSGFGEGIGQGSGPGEGIGIGIGQGGPSVVVPGTRIPPIVVPGAQIPGFVIPGITVPGYGTGCQTGGCNPNPPHYYIPPSCPHCPPFTSGQDKHMSDKGAMTEALAPTSPEIHV", "length": 416, "header": "tr|Q9LD84-1|Q9LD84_ARATH Isoform 1 of Anther 20 OS=Arabidopsis thaliana OX=3702 GN=ATA20 PE=4 SV=1 CANONICAL=Q9LD84-1" }, "locus": { "chromosome": "3", "start_pos": 5201622, "end_pos": 5203197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15400.1", "url": "https://www.ensemblgenomes.org/id/AT3G15400.1" }, { "database": "Ensembl Peptide", "id": "AT3G15400.1", "url": "https://www.ensemblgenomes.org/id/AT3G15400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IYR6", "url": "https://www.uniprot.org/uniprotkb/F4IYR6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IYR6", "url": "https://www.uniprot.org/uniprotkb/F4IYR6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G15400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9LD84", "url": "https://www.uniprot.org/uniprotkb/Q9LD84" } ], "pmid": "" }, { "name": "plant-type cell wall", "id": "GO:0009505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009505", "evidence": [ { "database": "UniProtKB", "id": "Q9LD84", "url": "https://www.uniprot.org/uniprotkb/Q9LD84" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LD84", "url": "https://www.uniprot.org/uniprotkb/Q9LD84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LE80-1", "uniprot_ac": "Q9LE80", "uniprot_id": "Q9LE80_ARATH", "mass": { "chemical_mass": 27700.0, "monoisotopic_mass": 27700.0 }, "refseq": { "ac": "NP_566513", "name": "aluminum induced protein with YGL and LRDR motifs", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566513" }, "gene_names": [], "protein_names": [ { "name": "Aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "Q9LE80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LE80/entry#names_and_taxonomy" } ] }, { "name": "aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "NP_566513", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566513" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LE80", "url": "https://www.uniprot.org/uniprotkb/Q9LE80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LE80", "locus": {} } ], "crossref": [ { "id": "AT3G15450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G15450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820784", "url": "https://www.ncbi.nlm.nih.gov/gene/820784", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LE80", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LE80*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR024286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IDGIYCT", "url": "https://omabrowser.org/oma/group/IDGIYCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IYS4", "url": "https://www.orthodb.org/?gene=F4IYS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LE80", "url": "https://www.orthodb.org/?gene=Q9LE80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566513", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566513", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G15450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G15450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IYS4", "url": "https://www.uniprot.org/uniprotkb/F4IYS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IYS4-1", "url": "https://www.uniprot.org/uniprotkb/F4IYS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LE80", "url": "https://www.uniprot.org/uniprotkb/Q9LE80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LE80-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], 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Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IYS4", "url": "https://www.uniprot.org/uniprotkb/F4IYS4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9LE80", "url": "https://www.uniprot.org/uniprotkb/Q9LE80" }, { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LE80", "url": "https://www.uniprot.org/uniprotkb/Q9LE80" }, { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4IYS4", "url": "https://www.uniprot.org/uniprotkb/F4IYS4" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": 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phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE80" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9LE80", "url": 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Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J2T8", "url": "https://www.uniprot.org/uniprotkb/F4J2T8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ 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"header": "tr|F4J6P1-1|Q9LH38_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9LH38-1" }, "locus": { "chromosome": "3", "start_pos": 12357280, "end_pos": 12357865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30730.1", "url": "https://www.ensemblgenomes.org/id/AT3G30730.1" }, { "database": "Ensembl Peptide", "id": "AT3G30730.1", "url": "https://www.ensemblgenomes.org/id/AT3G30730.1" } ] } }, { "isoform_ac": "Q9LH38-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH38/entry#Q9LH38-1", "sequence": { "sequence": "MATTIPIYLGFTIKPNLPEDKKKQTSHYNPNMAPHKAQQSLQPYTFQNFDDIDGDFCQKEVLLRLIYIWEARNIKKGNILMGFELLFIYSQSNPMEGFISANRIFPYQEDLKYNSIYKLNKVEWCNSSNAIKYLFKYVTKGVNKSAIFIEKGTNTTSNSED", "length": 161, "header": "tr|Q9LH38-1|Q9LH38_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LH38-1" }, "locus": { "chromosome": "3", "start_pos": 12357322, 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"id": "Q9LHL7", "url": "https://www.orthodb.org/?gene=Q9LHL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566410", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566410", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12050", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12050", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J8L7", "url": "https://www.uniprot.org/uniprotkb/F4J8L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J8L7-1", "url": "https://www.uniprot.org/uniprotkb/F4J8L7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHL7", "url": "https://www.uniprot.org/uniprotkb/Q9LHL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHL7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKFGEGDKRWIVEDRPDGTNVHNWHWSETNCLEWSRNFFTKQFSGVDILSGEGNLFIKVSKIEKVEGEAYVNVRKGKIIPGYELNVSLSWEGEAKDSDGKTLLKADGLVDMPYISDENADEDPEIRFSVKDEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAAGSATVAVEKSGAAPVVSAAAVESKVVKEKKKAKTKEGFKTITMTEKFNCRARDLYEILMDENRWKGFTQSNAKISKDVNGPISVFDGSVTGMNLELEEGKLIVQKWRFGSWPDGLDSTVKIVFEEPQPGVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI", "length": 360, "header": "tr|Q9LHL7-1|Q9LHL7_ARATH Isoform 1 of Aha1 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MEC18.18 PE=1 SV=1 CANONICAL=Q9LHL7-1" }, "isoforms": [ { "isoform_ac": "F4J8L7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL7/entry#F4J8L7-1", "sequence": { "sequence": "MAKFGEGDKRWIVEDRPDGTNVHNWHWSETNCLEWSRNFFTKQFSGVDILSGEGEAKDSDGKTLLKADGLVDMPYISDENADEDPEIRFSVKDEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAAGSATVAVEKSGAAPVVSAAAVESKVVKEKKKAKTKEGFKTITMTEKFNCRARDLYEILMDENRWKGFTQSNAKISKDVNGPISVFDGSVTGMNLELEEGKLIVQKWRFGSWPDGLDSTVKIVFEEPQPGVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI", "length": 321, "header": "tr|F4J8L7-1|Q9LHL7_ARATH Computationally mapped isoform of Aha1 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MEC18.18 PE=1 SV=1 CANONICAL=Q9LHL7-1" }, "locus": { "chromosome": "3", "start_pos": 3839102, "end_pos": 3841466, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12050.2", "url": "https://www.ensemblgenomes.org/id/AT3G12050.2" }, { "database": "Ensembl Peptide", "id": "AT3G12050.2", "url": "https://www.ensemblgenomes.org/id/AT3G12050.2" } ] } }, { "isoform_ac": "Q9LHL7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHL7/entry#Q9LHL7-1", "sequence": { "sequence": "MAKFGEGDKRWIVEDRPDGTNVHNWHWSETNCLEWSRNFFTKQFSGVDILSGEGNLFIKVSKIEKVEGEAYVNVRKGKIIPGYELNVSLSWEGEAKDSDGKTLLKADGLVDMPYISDENADEDPEIRFSVKDEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAAGSATVAVEKSGAAPVVSAAAVESKVVKEKKKAKTKEGFKTITMTEKFNCRARDLYEILMDENRWKGFTQSNAKISKDVNGPISVFDGSVTGMNLELEEGKLIVQKWRFGSWPDGLDSTVKIVFEEPQPGVTIVNLTHTDVPEEDRYGNATVVENTERGWRDLIFHRIRAVFGFGI", "length": 360, "header": "tr|Q9LHL7-1|Q9LHL7_ARATH Isoform 1 of Aha1 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MEC18.18 PE=1 SV=1 CANONICAL=Q9LHL7-1" }, "locus": { "chromosome": "3", "start_pos": 3839101, "end_pos": 3841606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12050.1", "url": "https://www.ensemblgenomes.org/id/AT3G12050.1" }, { "database": "Ensembl Peptide", "id": "AT3G12050.1", "url": "https://www.ensemblgenomes.org/id/AT3G12050.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 295, "end_pos": 295, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser295" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J8L7", "url": "https://www.uniprot.org/uniprotkb/F4J8L7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4J8L7", "url": "https://www.uniprot.org/uniprotkb/F4J8L7" }, { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J8L7", "url": "https://www.uniprot.org/uniprotkb/F4J8L7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LHL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHL7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT3G12050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12050", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K7W5-1", "protein_name": "Activator of HSP90 ATPase homolog 2", "gene_name": "Ahsa2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATVWSKGKLRELLVGLAMENEAGRCEISELKQVEGEASCNSRKGKLIFFYEWNIKLAWKGTVKESGAKHKGLIEIPSLSEENEVNDTEVNVSKKKGDGEILKDLMRTTGTAKVREALGEYLKALKTEFTTGMILPTKAGATQALTLERKLTENALQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKELVQGFSKSPAVLEAEKGGKFQMFDGNITGEYVELVTNRKIIMKWRCRNWPEEHYATVELNFVPAPGQTELQLDCKGVPVCKEEHMKFCWQKQHFEEIKGLLQLTTQNA", "length": 331 }, "evidence": [ { "id": "Q9LHL7", "url": "https://omabrowser.org/oma/group/Q9LHL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BSW0-1", "protein_name": "AHA1, activator of heat shock 90kDa 2", "gene_name": "AHSA2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKWGQGDPRWIVEERADGTNVNNWHWTERDATSWSRSKLQEVLVGLVVEGEAGRCEICELKQVEGEASCSSRKGRLIFFYEWNLRLSWKGTVKESGEKHKGSIEIPNLSEENEVDDTEINVSKKKGEGDILKELMRTEGTTKVREALRDYLKALKTEFTLGMILPTKAAGQELAAERRLSGNTVQESASPHLQGLVGVKIPTVRILMREIFSSPADELYSIFTTKELVQKFSKCPAVIEAEKGGKLLMFDGCVSGEYTELVPGKRLVLKWRCRNWPDEHYATVALNFQNMVAETELQLECKGVPVSNEDSTRQWWKKQYFEEIHNLLQQSKDNMD", "length": 336 }, "evidence": [ { "id": "Q9LHL7", "url": "https://omabrowser.org/oma/group/Q9LHL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q12449-1", "protein_name": "Hsp90 co-chaperone AHA1", "gene_name": "AHA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVVNNPNNWHWVDKNCIGWAKEYFKQKLVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKETSELSEAKPLIRSELLPKLRQIFQQFGKDLLATHGNDIQVPESQVKSNYTRGNQKSSFTEIKDSASKPKKNALPSSTSTSAPVSSTNKVPQNGSGNSTSIYLEPTFNVPSSELYETFLDKQRILAWTRSAQFFNSGPKLETKEKFELFGGNVISELVSCEKDKKLVFHWKLKDWSAPFNSTIEMTFHESQEFHETKLQVKWTGIPVGEEDRVRANFEEYYVRSIKLTFGFGAVL", "length": 350 }, "evidence": [ { "id": "Q9LHL7", "url": "https://omabrowser.org/oma/group/Q9LHL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8N9S3-1", "protein_name": "Activator of 90 kDa heat shock protein ATPase homolog 2", "gene_name": "Ahsa2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATIWSKGKLRELLVGIAMENEAGRCEISELKQVEGEASCNSRKGKLIFFYEWNIKLAWKGTVKESGAKHKGLIEIPSLSEENEINDTEVNVSKKKGDGEILKDLMRTTGTAKVREALGEYLKALKTEFTTGMILPTKAVATQELTLQRKLNENKLQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKELVQKFSKSPAVLEAERGGKFQMFDGNISGEYVELVTNRKIIMKWRCRNWPEEHYATVELNFVPAPGQTELQLDCKGVPVCKEENMKFCWQKQHFEEIKGLLELTAQNA", "length": 331 }, "evidence": [ { "id": "Q9LHL7", "url": "https://omabrowser.org/oma/group/Q9LHL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V9Q4-1", "protein_name": "Activator of Hsp90 ATPase AHSA1-like N-terminal domain-containing protein", "gene_name": "Dmel\\CG1416", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIGQSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLIHKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQLASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALNSSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTRAPAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNVVIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSISDAL", "length": 354 }, "evidence": [ { "id": "Q9LHL7", "url": "https://omabrowser.org/oma/group/Q9LHL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "Q9LHL7", "url": "https://www.uniprot.org/uniprotkb/Q9LHL7" } ], "pmid": "" }, { "name": "ATPase activator activity", "id": "GO:0001671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001671", 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"Organism-specific" ] }, { "id": "821433", "url": "https://www.ncbi.nlm.nih.gov/gene/821433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G19000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYPDMFK", "url": "https://omabrowser.org/oma/group/HYPDMFK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4J9Y8", "url": "https://www.orthodb.org/?gene=F4J9Y8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LJ66", "url": "https://www.orthodb.org/?gene=Q9LJ66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10209", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10209", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10209:SF850", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10209:SF850", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566623", "url": 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"MGELDEAFIQAPEHRPNTHLTNSGDFIFSDEIPTIDLSSLEDTHHDKTAIAKEIAEACKRWGFFQVINHGLPSALRHRVEKTAAEFFNLTTEEKRKVKRDEVNPMGYHDEEHTKNVRDWKEIFDFFLQDSTIVPASPEPEDTELRKLTNQWPQNPSHFREVCQEYAREVEKLAFRLLELVSISLGLPGDRLTGFFNEQTSFLRFNHYPPCPNPELALGVGRHKDGGALTVLAQDSVGGLQVSRRSDGQWIPVKPISDALIINMGNCIQVWTNDEYWSAEHRVVVNTSKERFSIPFFFFPSHEANIEPLEELISEENPPCYKKYNWGKFFVSRNRSDFKKLEVENIQIDHFKA", "length": 352, "header": "tr|Q9LJ66-1|Q9LJ66_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJ66-1" }, "isoforms": [ { "isoform_ac": "F4J9Y8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ66/entry#F4J9Y8-1", "sequence": { "sequence": "MGELDEAFIQAPEHRPNTHLTNSGDFIFSDEIPTIDLSSLEDTHHDKTAIAKEIAEACKRWGFFQVINHGLPSALRHRVEKTAAEFFNLTTEEKRKVKRDEVNPMGYHDEEHTKNVRDWKEIFDFFLQDSTIVPASPEPEDTELRKLTNQWPQNPSHFREVCQEYAREVEKLAFRLLELVSISLGLPGDRLTGFFNEQTSFLRFNHYPPCPNPELALGVGRHKDGGALTVLAQDSVGGLQVSRRSDGQWIPVKPISDALIINMGNCIQVNVDFRLKTN", "length": 278, "header": "tr|F4J9Y8-1|Q9LJ66_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJ66-1" }, "locus": { "chromosome": "3", "start_pos": 6553440, "end_pos": 6555040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19000.2", "url": "https://www.ensemblgenomes.org/id/AT3G19000.2" }, { "database": "Ensembl Peptide", "id": "AT3G19000.2", "url": "https://www.ensemblgenomes.org/id/AT3G19000.2" } ] } }, { "isoform_ac": "Q9LJ66-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ66/entry#Q9LJ66-1", "sequence": { "sequence": "MGELDEAFIQAPEHRPNTHLTNSGDFIFSDEIPTIDLSSLEDTHHDKTAIAKEIAEACKRWGFFQVINHGLPSALRHRVEKTAAEFFNLTTEEKRKVKRDEVNPMGYHDEEHTKNVRDWKEIFDFFLQDSTIVPASPEPEDTELRKLTNQWPQNPSHFREVCQEYAREVEKLAFRLLELVSISLGLPGDRLTGFFNEQTSFLRFNHYPPCPNPELALGVGRHKDGGALTVLAQDSVGGLQVSRRSDGQWIPVKPISDALIINMGNCIQVWTNDEYWSAEHRVVVNTSKERFSIPFFFFPSHEANIEPLEELISEENPPCYKKYNWGKFFVSRNRSDFKKLEVENIQIDHFKA", "length": 352, "header": "tr|Q9LJ66-1|Q9LJ66_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJ66-1" }, "locus": { "chromosome": "3", "start_pos": 6553440, "end_pos": 6555147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19000.1", "url": "https://www.ensemblgenomes.org/id/AT3G19000.1" }, { "database": "Ensembl Peptide", "id": "AT3G19000.1", "url": "https://www.ensemblgenomes.org/id/AT3G19000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J9Y8", "url": "https://www.uniprot.org/uniprotkb/F4J9Y8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J9Y8", "url": "https://www.uniprot.org/uniprotkb/F4J9Y8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ66", "url": "https://www.uniprot.org/uniprotkb/Q9LJ66" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ66", "url": "https://www.uniprot.org/uniprotkb/Q9LJ66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ66", "url": "https://www.uniprot.org/uniprotkb/Q9LJ66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LJ66", "database": "UniProtKB", "url": 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"end_pos": 6558648, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19010.4", "url": "https://www.ensemblgenomes.org/id/AT3G19010.4" }, { "database": "Ensembl Peptide", "id": "AT3G19010.4", "url": "https://www.ensemblgenomes.org/id/AT3G19010.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, 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"isoform_ac": "F4JWH3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFM4/entry#F4JWH3-1", "sequence": { "sequence": "MGKKKGKAIIVGGSIAGLSCAHSLTLACWDVLVLEKSSEPPVGSPTGAGLGLDPQARQIIKSWLTTPQLLDEITLPLSIDQNQTTDSEKKVTRILTRDEDFDFRAAYWSDIQSLLYNALPQTMFLWGHKFLSFTMSQDESNVKVKTLVVETQETVEIEGDLLIAADGCLSSIRKTFLPDFKLRYSGYCAWRGVFDFSGNENSETVSGIKKVYPDLGKCLYFDLGEQTHSVFYELFNKKLNWIWYVNQPEPDLKVRRLIPLSF", "length": 262, "header": "tr|F4JWH3-1|Q9LFM4_ARATH Computationally mapped isoform of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=Q9LFM4-1" }, "locus": { "chromosome": "5", "start_pos": 3617138, "end_pos": 3618913, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G11330.2", "url": "https://www.ensemblgenomes.org/id/AT5G11330.2" }, { "database": "Ensembl Peptide", "id": "AT5G11330.2", "url": "https://www.ensemblgenomes.org/id/AT5G11330.2" } ] } }, { "isoform_ac": "Q9LFM4-1", "url": 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Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JWH3", "url": "https://www.uniprot.org/uniprotkb/F4JWH3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JWH3", "url": "https://www.uniprot.org/uniprotkb/F4JWH3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G11330", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G11330", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "FAD binding", 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"proline-rich extensin-like family protein", "type": "synonym", "evidence": [ { "id": "NP_001331126", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331126" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHS1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "EXT13", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1", "locus": { "chromosome": "CP002688.1", "start_pos": 13435424, "end_pos": 13434151, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT5G35190", "url": "https://www.ensemblgenomes.org/id/AT5G35190" } ] } } ], "crossref": [ { "id": "AT5G35190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G35190", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "833473", "url": "https://www.ncbi.nlm.nih.gov/gene/833473", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006706", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006706", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G35190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G35190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JYC5", "url": "https://www.orthodb.org/?gene=F4JYC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "Q9LHS1", "url": "https://www.orthodb.org/?gene=Q9LHS1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36586", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36586", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36586:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36586:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001331126", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331126", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G35190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G35190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JYC5", "url": "https://www.uniprot.org/uniprotkb/F4JYC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYC5-1", "url": "https://www.uniprot.org/uniprotkb/F4JYC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHS1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHS1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSPRVMERVHCMVYVVVLSAIAATVTAYPYSSHQTPQYNSPVHKHESSYSPKKYSPYYSASPLPPLQYRRQGPKYTPHPKPYLFNSPPPPYYSPSPKEDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSLSPKVDYKSPPPPYVYNSPPPPYYSPSPKVDYKFSPPPYVYNSPSPPYYSPSPKVDYKSPPPPYVYNSPPPPYFSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPEVSYKSPPPPPYYSPSLEVSYKSPPPLFVYNFPPPPPFYSPSPKVSYKSPPAPYVSKTPNY", "length": 334, "header": "tr|Q9LHS1-1|Q9LHS1_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT13 PE=4 SV=1 CANONICAL=Q9LHS1-1" }, "isoforms": [ { "isoform_ac": "F4JYC5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1/entry#F4JYC5-1", "sequence": { "sequence": "MERVHCMVYVVVLSAIAATVTAYPYSSHQTPQYNSPVHKHESSYSPKKYSPYYSASPLPPLQYRRQGPKYTPHPKPYLFNSPPPPYYSPSPKEDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSLSPKVDYKSPPPPYVYNSPPPPYYSPSPKVDYKFSPPPYVYNSPSPPYYSPSPKVDYKSPPPPYVYNSPPPPYFSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPEVSYKSPPPPPYYSPSLEVSYKSPPPLFVYNFPPPPPFYSPSPKVSYKSPPAPYVSKTPNY", "length": 328, "header": "tr|F4JYC5-1|Q9LHS1_ARATH Computationally mapped isoform of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT13 PE=4 SV=1 CANONICAL=Q9LHS1-1" }, "locus": { "chromosome": "5", "start_pos": 13434181, "end_pos": 13435424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G35190.1", "url": "https://www.ensemblgenomes.org/id/AT5G35190.1" }, { "database": "Ensembl Peptide", "id": "AT5G35190.1", "url": "https://www.ensemblgenomes.org/id/AT5G35190.1" } ] } }, { "isoform_ac": "Q9LHS1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1/entry#Q9LHS1-1", "sequence": { "sequence": "MRSPRVMERVHCMVYVVVLSAIAATVTAYPYSSHQTPQYNSPVHKHESSYSPKKYSPYYSASPLPPLQYRRQGPKYTPHPKPYLFNSPPPPYYSPSPKEDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSLSPKVDYKSPPPPYVYNSPPPPYYSPSPKVDYKFSPPPYVYNSPSPPYYSPSPKVDYKSPPPPYVYNSPPPPYFSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPEVSYKSPPPPPYYSPSLEVSYKSPPPLFVYNFPPPPPFYSPSPKVSYKSPPAPYVSKTPNY", "length": 334, "header": "tr|Q9LHS1-1|Q9LHS1_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT13 PE=4 SV=1 CANONICAL=Q9LHS1-1" }, "locus": { "chromosome": "5", "start_pos": 13434151, "end_pos": 13435372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G35190.2", "url": "https://www.ensemblgenomes.org/id/AT5G35190.2" }, { "database": "Ensembl Peptide", "id": "AT5G35190.2", "url": "https://www.ensemblgenomes.org/id/AT5G35190.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 322, "end_pos": 322, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHS1" } ], "site_lbl": "Ser322" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JYC5", "url": "https://www.uniprot.org/uniprotkb/F4JYC5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JYC5", "url": "https://www.uniprot.org/uniprotkb/F4JYC5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G35190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G35190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cell wall", "id": "GO:0005199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005199", "evidence": [ { "database": "UniProtKB", "id": "Q9LHS1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plant-type cell wall organization", "id": "GO:0009664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009664", "evidence": [ { "database": "UniProtKB", "id": "Q9LHS1", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LHS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHS1" }, { "id": "PF04554", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04554" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Extensin", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 157, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 322 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FN27-1", "uniprot_ac": "Q9FN27", "uniprot_id": "Q9FN27_ARATH", "mass": { "chemical_mass": 40025.0, "monoisotopic_mass": 40025.0 }, "refseq": {}, "gene_names": [ { "name": "K19P17.17", "type": "synonym", "evidence": [ { "id": "Q9FN27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ] }, { "name": "K19P17_17", "type": "synonym", "evidence": [ { "id": "Q9FN27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ] } ], "protein_names": [ { "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9FN27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN27/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FN27", "locus": {} } ], "crossref": [ { "id": "AT5G54000", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G54000", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "835483", "url": "https://www.ncbi.nlm.nih.gov/gene/835483", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G54000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G54000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IALWPEH", "url": "https://omabrowser.org/oma/group/IALWPEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47991", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47991", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G54000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G54000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JYS8", "url": "https://www.uniprot.org/uniprotkb/F4JYS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JYS8-1", "url": "https://www.uniprot.org/uniprotkb/F4JYS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN27-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKPKLKTVQEVVAAGEKLPERYLYTPTGDGEGDQPFNGLLPEMKISIIDLNLLFSSSDDGREELSKLHSAISTWGVVQVMNHGISEALLDKIHELTKQFFVLPTKEKQKYAREISSFQGFGNDMILSDDQVLDWVDRLYLITYPEDQRQLKFWPENPSGFRETLHEYTMKQQLVVEKFFKALARSLELEDNCFLEMHGENATLETRFNIYPPCPRPDKVLGLKPHSDGSAFTLILPDKNVEGLQFLKDGKWYKASILPHTILINVGDTMEVMSNGIYKSPVHRVVLNGKKERIYVATFCNADEDKEIQPLNGLVSEARPRLYKAVKKSEKNFFDYYQQGRRPIEAAMI", "length": 349, "header": "tr|Q9FN27-1|Q9FN27_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FN27-1" }, "isoforms": [ { "isoform_ac": "F4JYS8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN27/entry#F4JYS8-1", "sequence": { "sequence": "MNHGISEALLDKIHELTKQFFVLPTKEKQKYAREISSFQGFGNDMILSDDQVLDWVDRLYLITYPEDQRQLKFWPENPSGFRETLHEYTMKQQLVVEKFFKALARSLELEDNCFLEMHGENATLETRFNIYPPCPRPDKVLGLKPHSDGSAFTLILPDKNVEGLQFLKDGKWYKASILPHTILINVGDTMEVMSNGIYKSPVHRVVLNGKKERIYVATFCNADEDKEIQPLNGLVSEARPRLYKAVKKSEKNFFDYYQQGRRPIEAAMI", "length": 269, "header": "tr|F4JYS8-1|Q9FN27_ARATH Computationally mapped isoform of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FN27-1" }, "locus": { "chromosome": "5", "start_pos": 21917699, "end_pos": 21918792, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54000.1", "url": "https://www.ensemblgenomes.org/id/AT5G54000.1" }, { "database": "Ensembl Peptide", "id": "AT5G54000.1", "url": "https://www.ensemblgenomes.org/id/AT5G54000.1" } ] } }, { "isoform_ac": "Q9FN27-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN27/entry#Q9FN27-1", "sequence": { "sequence": "MEKPKLKTVQEVVAAGEKLPERYLYTPTGDGEGDQPFNGLLPEMKISIIDLNLLFSSSDDGREELSKLHSAISTWGVVQVMNHGISEALLDKIHELTKQFFVLPTKEKQKYAREISSFQGFGNDMILSDDQVLDWVDRLYLITYPEDQRQLKFWPENPSGFRETLHEYTMKQQLVVEKFFKALARSLELEDNCFLEMHGENATLETRFNIYPPCPRPDKVLGLKPHSDGSAFTLILPDKNVEGLQFLKDGKWYKASILPHTILINVGDTMEVMSNGIYKSPVHRVVLNGKKERIYVATFCNADEDKEIQPLNGLVSEARPRLYKAVKKSEKNFFDYYQQGRRPIEAAMI", "length": 349, "header": "tr|Q9FN27-1|Q9FN27_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FN27-1" }, "locus": { "chromosome": "5", "start_pos": 21917699, "end_pos": 21919180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G54000.2", "url": "https://www.ensemblgenomes.org/id/AT5G54000.2" }, { "database": "Ensembl Peptide", "id": "AT5G54000.2", "url": "https://www.ensemblgenomes.org/id/AT5G54000.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JYS8", "url": "https://www.uniprot.org/uniprotkb/F4JYS8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JYS8", "url": "https://www.uniprot.org/uniprotkb/F4JYS8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G54000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G54000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FN27", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FN27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN27" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 199, "end_pos": 302, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LK83-1", "uniprot_ac": "Q9LK83", "uniprot_id": "Q9LK83_ARATH", "mass": { "chemical_mass": 131660.0, "monoisotopic_mass": 131660.0 }, "refseq": { "ac": "NP_199642", "name": "portal protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199642" }, "gene_names": [ { "name": "RASD1", "type": "recommended", "evidence": [ { "id": "Q9LK83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ] }, { "name": "K23F3.3", "type": "synonym", "evidence": [ { "id": "NP_199642", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199642" }, { "id": "Q9LK83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ] }, { "name": "K23F3_3", "type": "synonym", "evidence": [ { "id": "NP_199642", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199642" }, { "id": "Q9LK83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ] } ], "protein_names": [ { "name": "Portal protein", "type": "synonym", "evidence": [ { "id": "Q9LK83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK83/entry#names_and_taxonomy" } ] }, { "name": "portal protein", "type": "synonym", "evidence": [ { "id": "NP_199642", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199642" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK83", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "RASD1", "url": "https://www.uniprot.org/uniprotkb/Q9LK83", "locus": {} } ], "crossref": [ { "id": "AT5G48310", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G48310", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834884", "url": "https://www.ncbi.nlm.nih.gov/gene/834884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G48310", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PVMKARN", "url": "https://omabrowser.org/oma/group/PVMKARN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_199642", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199642", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G48310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G48310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K1M6", "url": "https://www.uniprot.org/uniprotkb/F4K1M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K1M6-1", "url": "https://www.uniprot.org/uniprotkb/F4K1M6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK83", "url": "https://www.uniprot.org/uniprotkb/Q9LK83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK83-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQLQRPRIRSPLSENLPPSTFSQSPLKRNSNLSSPILVTPTLNDDESNDNMSIESVSDTGEGNELLFSDYDVEDEEEEEVIGRRYDEEEVFGDKSNSKLNRGMLKDKNLRIEVPFMNRRVTDCELELRRFALKNSTPASERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEICGEAGVESSKQESMRSSSHLYRVEEFGERYFPNLTRFFVISFCGLVLMCLIMVWCSVKDSKTVEDSKISEICSDELEECHSISGQYAWQSLLAYDACIRLCLYEWSKGSTEASEFLRDECRILRGAFGLHKFLLQPRGVRSSEKNNNVKAEPKPSLKSKNVVRKLRVEVKRLRLIPQRKLRGTDSLRSLMNMQIGMGAEYCRQVSSLVKTGMTSIKQATLSAVSEEQFSCYLQMKSTAEGGQIEQGSSVCLQSGTGSYHVFFPESEGDALMIEVQDKKKSVQGKAMISITSLTENPNDNVRWWPIYHGEQECVGKIQLFIGSTTTSDEDCHIKNAPVVETLAYDLLLEAATRAQKFHPQNLRLDGSWKWLLSEFADYYGVSDSYTKLRYLSHVMNVATPTKTCLQLVHELLVPILMARSEKSLTRQEKSILMDCEIEIEKLMATVFENYKSLDENFPSGLADISCPVQVSATTALSSAVQVFTLLHDILSPEAQETLKNYLQTAAKKRCRKHMVDTDEYVSCNSEGFLLDSVTISTAYLKMKNLFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVPPSCPLPHVNELLIAVSDFERNLDSWGISPVHGGVDSRGLFHNYIMVWIHDMELRLLDRCRAEKVPWSGVITNHSTSPFAEDIYERIKDSLIEYEVVISRWPQYTLILENTASIVERAIVKSLEKQYNDILIPLKDSIPKRLNMHVQKLTRRQSSVLYSLPTQLGTFINTIKRVLDVLHPRVEDILRQWASCLPVVEDKKLIFGEQMNVITVLLRTKYRNYMQAAVDKLVSNTQSNKNTRLKRILEEIKDNEREVEVRERMKTLCLQITDSVSNLHDVFTSQIFVASCRLFWDRMAQVVLKFLEGRKENEVGYKGSYYALGIIEDTFASEMQRLQGNSLQEKDMEAPRSVIEARSILSRDNNANHSSYFYV", "length": 1156, "header": "tr|Q9LK83-1|Q9LK83_ARATH Isoform 1 of Portal protein OS=Arabidopsis thaliana OX=3702 GN=RASD1 PE=1 SV=1 CANONICAL=Q9LK83-1" }, "isoforms": [ { "isoform_ac": "F4K1M6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK83/entry#F4K1M6-1", "sequence": { "sequence": "MAQLQRPRIRSPLSENLPPSTFSQSPLKRNSNLSSPILVTPTLNDDESNDNMSIESVSDTGEGNELLFSDYDVEDEEEEEVIGRRYDEEEVFGDKSNSKLNRGMLKDKNLRIEVPFMNRRVTDCELELRRFALKNSTPASERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEICGEAGVESSKQESMRSSSHLYRVEEFGESVKDSKTVEDSKISEICSDELEECHSISGQYAWQSLLAYDACIRLCLYEWSKGSTEASEFLRDECRILRGAFGLHKFLLQPRGVRSSEKNNNVKAEPKPSLKSKNVVRKLRVEVKRLRLIPQRKLRGTDSLRSLMNMQIGMGAEYCRQVSSLVKTGMTSIKQATLSAVSEEQFSCYLQMKSTAEGGQIEQGSSVCLQSGTGSYHVFFPESEGDALMIEVQDKKKSVQGKAMISITSLTENPNDNVRWWPIYHGEQECVGKIQLFIGSTTTSDEDCHIKNAPVVETLAYDLLLEAATRAQKFHPQNLRLDGSWKWLLSEFADYYGVSDSYTKLRYLSHVMNVATPTKTCLQLVHELLVPILMARSEKSLTRQEKSILMDCEIEIEKLMATVFENYKSLDENFPSGLADISCPVQVSATTALSSAVQVFTLLHDILSPEAQETLKNYLQTAAKKRCRKHMVDTDEYVSCNSEGFLLDSVTISTAYLKMKNLFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVPPSCPLPHVNELLIAVSDFERNLDSWGISPVHGGVDSRGLFHNYIMVWIHDMELRLLDRCRAEKVPWSGVITNHSTSPFAEDIYERIKDSLIEYEVVISRWPQYTLILENTASIVERAIVKSLEKQYNDILIPLKDSIPKRLNMHVQKLTRRQSSVLYSLPTQLGTFINTIKRVLDVLHPRVEDILRQWASCLPVVEDKKLIFGEQMNVITVLLRTKYRNYMQAAVDKLVSNTQSNKNTRLKRILEEIKDNEREVEVRERMKTLCLQITDSVSNLHDVFTSQIFVASCRLFWDRMAQVVLKFLEGRKENEVGYKGSYYALGIIEDTFASEMQRLQGNSLQEKDMEAPRSVIEARSILSRDNNANHSSYFYV", "length": 1129, "header": "tr|F4K1M6-1|Q9LK83_ARATH Computationally mapped isoform of Portal protein OS=Arabidopsis thaliana OX=3702 GN=RASD1 PE=1 SV=1 CANONICAL=Q9LK83-1" }, "locus": { "chromosome": "5", "start_pos": 19574780, "end_pos": 19580469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48310.2", "url": "https://www.ensemblgenomes.org/id/AT5G48310.2" }, { "database": "Ensembl Peptide", "id": "AT5G48310.2", "url": "https://www.ensemblgenomes.org/id/AT5G48310.2" } ] } }, { "isoform_ac": "Q9LK83-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK83/entry#Q9LK83-1", "sequence": { "sequence": "MAQLQRPRIRSPLSENLPPSTFSQSPLKRNSNLSSPILVTPTLNDDESNDNMSIESVSDTGEGNELLFSDYDVEDEEEEEVIGRRYDEEEVFGDKSNSKLNRGMLKDKNLRIEVPFMNRRVTDCELELRRFALKNSTPASERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEICGEAGVESSKQESMRSSSHLYRVEEFGERYFPNLTRFFVISFCGLVLMCLIMVWCSVKDSKTVEDSKISEICSDELEECHSISGQYAWQSLLAYDACIRLCLYEWSKGSTEASEFLRDECRILRGAFGLHKFLLQPRGVRSSEKNNNVKAEPKPSLKSKNVVRKLRVEVKRLRLIPQRKLRGTDSLRSLMNMQIGMGAEYCRQVSSLVKTGMTSIKQATLSAVSEEQFSCYLQMKSTAEGGQIEQGSSVCLQSGTGSYHVFFPESEGDALMIEVQDKKKSVQGKAMISITSLTENPNDNVRWWPIYHGEQECVGKIQLFIGSTTTSDEDCHIKNAPVVETLAYDLLLEAATRAQKFHPQNLRLDGSWKWLLSEFADYYGVSDSYTKLRYLSHVMNVATPTKTCLQLVHELLVPILMARSEKSLTRQEKSILMDCEIEIEKLMATVFENYKSLDENFPSGLADISCPVQVSATTALSSAVQVFTLLHDILSPEAQETLKNYLQTAAKKRCRKHMVDTDEYVSCNSEGFLLDSVTISTAYLKMKNLFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVPPSCPLPHVNELLIAVSDFERNLDSWGISPVHGGVDSRGLFHNYIMVWIHDMELRLLDRCRAEKVPWSGVITNHSTSPFAEDIYERIKDSLIEYEVVISRWPQYTLILENTASIVERAIVKSLEKQYNDILIPLKDSIPKRLNMHVQKLTRRQSSVLYSLPTQLGTFINTIKRVLDVLHPRVEDILRQWASCLPVVEDKKLIFGEQMNVITVLLRTKYRNYMQAAVDKLVSNTQSNKNTRLKRILEEIKDNEREVEVRERMKTLCLQITDSVSNLHDVFTSQIFVASCRLFWDRMAQVVLKFLEGRKENEVGYKGSYYALGIIEDTFASEMQRLQGNSLQEKDMEAPRSVIEARSILSRDNNANHSSYFYV", "length": 1156, "header": "tr|Q9LK83-1|Q9LK83_ARATH Isoform 1 of Portal protein OS=Arabidopsis thaliana OX=3702 GN=RASD1 PE=1 SV=1 CANONICAL=Q9LK83-1" }, "locus": { "chromosome": "5", "start_pos": 19574859, "end_pos": 19580362, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G48310.1", "url": "https://www.ensemblgenomes.org/id/AT5G48310.1" }, { "database": "Ensembl Peptide", "id": "AT5G48310.1", "url": "https://www.ensemblgenomes.org/id/AT5G48310.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1018, "end_pos": 1018, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK83" } ], "site_lbl": "Thr1018" }, { "start_pos": 1020, "end_pos": 1020, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK83" } ], "site_lbl": "Ser1020" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4K1M6", "url": "https://www.uniprot.org/uniprotkb/F4K1M6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4K1M6", "url": "https://www.uniprot.org/uniprotkb/F4K1M6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G48310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G48310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LK83", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to abscisic acid", "id": "GO:0009737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009737", "evidence": [ { "database": "UniProtKB", "id": "Q9LK83", "url": "https://www.uniprot.org/uniprotkb/Q9LK83" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1149, "end_pos": 1151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 858, "end_pos": 860, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 1018, 1020 ], "sequon_annotation_sites": [ { "start_pos": 1149, "end_pos": 1151 }, { "start_pos": 135, "end_pos": 137 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 858, "end_pos": 860 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LFQ6-1", "uniprot_ac": "Q9LFQ6", "uniprot_id": "Q9LFQ6_ARATH", "mass": { "chemical_mass": 77516.0, "monoisotopic_mass": 77516.0 }, "refseq": {}, "gene_names": [ { "name": "F2G14.110", "type": "synonym", "evidence": [ { "id": "Q9LFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6" } ] }, { "name": "F2G14_110", "type": "synonym", "evidence": [ { "id": "Q9LFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6" } ] } ], "protein_names": [ { "name": "WPP domain associated protein", "type": "synonym", "evidence": [ { "id": "Q9LFQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ6", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6", "locus": {} } ], "crossref": [ { "id": "AT5G14990", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G14990", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "831351", "url": "https://www.ncbi.nlm.nih.gov/gene/831351", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037490", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037490", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G14990", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RCCDLQT", "url": "https://omabrowser.org/oma/group/RCCDLQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33883", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33883", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33883:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33883:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT5G14990", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G14990", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4K8A5", "url": "https://www.uniprot.org/uniprotkb/F4K8A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4K8A5-1", "url": "https://www.uniprot.org/uniprotkb/F4K8A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFQ6", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFQ6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDIMKEVEGKVKFSMADSTMMLLVQQAMDKAHEKIKTKHGLLLRLNAISIFYELAVIQLESCLSFVGQETDKLESNHEEVVRDLREIKDRLHHRLLETEIAILEKDRQLLEMSENQESLRNVLESKETELVHLQDLERKRFHSKIGDFIKEDEFSELKSSVDQQVMNLRQKLETEYDELRGETEDPSAVDIDVLKGTMDLAFNKMHHAIFLSELGPIEQSWRWSIERDSMALLIKGFMNGLEEKMEKVMIVVKDYESGFKDRVGSIRRELECLESQSDQIIVHRSSSPRSCVATAATISSSSSIDNEIGDDKEAKEDREEEQDSSNFPVSKLIKSHESIIRRKSEELAPPKIESIKRQKSCNGSSSKRAIDDIVSGLDSLMSLNTKLFEHLFDDDDGDRHEHHPEVVMDDNLDDVWMKMQKNNSVFSDNAIEEKEDTEIRLMILEDTYLTLLKGLKADEITNNRKAEEEEEEIKSEKIESEVKCMDCLENLNREKDYEILLEDEEFRQELSWIIVTELLREVSETVENHEKIEANNKRVIEEEVNRACLEISLLYDDFDFKIQEKLKMVTFRLQNLEIKIDSTMDFIAELRQRESVYRTAFVLRSENLRKAETEVDLLGDQVDSLVKLLQKTLWTFHQHPLLLCNNSDILEISKMIKKELLSEDS", "length": 666, "header": "tr|Q9LFQ6-1|Q9LFQ6_ARATH Isoform 1 of WPP domain associated protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFQ6-1" }, "isoforms": [ { "isoform_ac": "F4K8A5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6/entry#F4K8A5-1", "sequence": { "sequence": "MKDIMKEVEGKVKFSMADSTMMLLVQQAMDKAHEKIKTKHGLLLRLNAISIFYELAVIQLESCLSFVGQETDKLESNHEEVVRDLREIKDRLHHRLLETEIAILEKDRQLLEMSENQESLRNVLESKETELVHLQDLERKRFHSKIGDFIKEDEFSELKSSVDQQVMNLRQKLETEYDELRGETEDPSAVDIDVLKGTMDLAFNKMHHAIFLSELGPIEQSWRWSIERDSMALLIKGFMNGLEEKMEKVMIVVKDYESGFKDRVGSIRRELECLESQSDQIIVHRSSSPRSCVATAATISSSSSIDNEIGDDKEAKEDREEEQDSSNFPVSKLIKSHESIIRRKSEELAPPKIESIKRQKSCNGSSSKRAIDDIVSGLDSLMSLNTKLFEHLFDDDDGDRHEHHPEVVMDDNLDDVWMKMQKNNSVFSDNAIEEKEDTEIRLMILEDTYLTLLKGLKADEITNNRKAEEEEEEIKSEKIESEVKCMDCLENLNREKDYEILLEDEEFRQELSWIIVTELLREVSETVENHEKIEANNKRVIEEEVNRACLEISLLYDDFDFKIQEKLKMVTFR", "length": 573, "header": "tr|F4K8A5-1|Q9LFQ6_ARATH Computationally mapped isoform of WPP domain associated protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFQ6-1" }, "locus": { "chromosome": "5", "start_pos": 4850668, "end_pos": 4853087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14990.2", "url": "https://www.ensemblgenomes.org/id/AT5G14990.2" }, { "database": "Ensembl Peptide", "id": "AT5G14990.2", "url": "https://www.ensemblgenomes.org/id/AT5G14990.2" } ] } }, { "isoform_ac": "Q9LFQ6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ6/entry#Q9LFQ6-1", "sequence": { "sequence": "MKDIMKEVEGKVKFSMADSTMMLLVQQAMDKAHEKIKTKHGLLLRLNAISIFYELAVIQLESCLSFVGQETDKLESNHEEVVRDLREIKDRLHHRLLETEIAILEKDRQLLEMSENQESLRNVLESKETELVHLQDLERKRFHSKIGDFIKEDEFSELKSSVDQQVMNLRQKLETEYDELRGETEDPSAVDIDVLKGTMDLAFNKMHHAIFLSELGPIEQSWRWSIERDSMALLIKGFMNGLEEKMEKVMIVVKDYESGFKDRVGSIRRELECLESQSDQIIVHRSSSPRSCVATAATISSSSSIDNEIGDDKEAKEDREEEQDSSNFPVSKLIKSHESIIRRKSEELAPPKIESIKRQKSCNGSSSKRAIDDIVSGLDSLMSLNTKLFEHLFDDDDGDRHEHHPEVVMDDNLDDVWMKMQKNNSVFSDNAIEEKEDTEIRLMILEDTYLTLLKGLKADEITNNRKAEEEEEEIKSEKIESEVKCMDCLENLNREKDYEILLEDEEFRQELSWIIVTELLREVSETVENHEKIEANNKRVIEEEVNRACLEISLLYDDFDFKIQEKLKMVTFRLQNLEIKIDSTMDFIAELRQRESVYRTAFVLRSENLRKAETEVDLLGDQVDSLVKLLQKTLWTFHQHPLLLCNNSDILEISKMIKKELLSEDS", "length": 666, "header": "tr|Q9LFQ6-1|Q9LFQ6_ARATH Isoform 1 of WPP domain associated protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFQ6-1" }, "locus": { "chromosome": "5", "start_pos": 4850764, "end_pos": 4853003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14990.1", "url": "https://www.ensemblgenomes.org/id/AT5G14990.1" }, { "database": "Ensembl Peptide", "id": "AT5G14990.1", "url": "https://www.ensemblgenomes.org/id/AT5G14990.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, 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"MASTTREKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHLYGKTRT", "length": 579, "header": "tr|Q9FMT8-1|Q9FMT8_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MUA22.12 PE=1 SV=1 CANONICAL=Q9FMT8-1" }, "locus": { "chromosome": "5", "start_pos": 4555821, "end_pos": 4558710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14120.1", "url": "https://www.ensemblgenomes.org/id/AT5G14120.1" }, { "database": "Ensembl Peptide", "id": "AT5G14120.1", "url": "https://www.ensemblgenomes.org/id/AT5G14120.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 184, "start_aa": "Thr", "end_pos": 184, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr184", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 208, "start_aa": "Thr", "end_pos": 208, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr208", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 295, "end_pos": 295, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMT8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMT8" } ], "site_lbl": "Thr295" }, { "start_pos": 301, "end_pos": 301, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMT8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMT8" } ], "site_lbl": "Ser301" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMT8", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMT8", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMT8", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G14120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9FMT8", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" } ], "pmid": "" }, { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "Q9FMT8", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 536, "end_pos": 538, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMT8" }, { "id": "PF23262", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23262" } ], "ann_type": "Domain_Extent_Annotation", 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{ "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", 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{ "id": "Q9FMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMT9" } ] }, { "name": "MUA22.11", "type": "synonym", "evidence": [ { "id": "NP_196915", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196915" } ] }, { "name": "MUA22_11", "type": "synonym", "evidence": [ { "id": "NP_196915", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196915" }, { "id": "Q9FMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMT9" } ] } ], "protein_names": [ { "name": "Peroxidase (DUF 3339)", "type": "synonym", "evidence": [ { "id": "Q9FMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMT9/entry#names_and_taxonomy" } ] }, { "name": "peroxidase (DUF 3339)", "type": "synonym", "evidence": [ { "id": "NP_196915", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_196915" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], 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"MTLSRVHQQVIAFPAAKTDTMSYLPDPASINNHQIPTSSKVSYLTGKGKSMLRKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNNDEQ", "length": 218, "header": "sp|Q9FMW6-1|GEML6_ARATH Isoform 1 of GEM-like protein 6 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=2 CANONICAL=Q9FMW6-1" }, "locus": { "chromosome": "5", "start_pos": 7858545, "end_pos": 7859201, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23350.1", "url": "https://www.ensemblgenomes.org/id/AT5G23350.1" }, { "database": "Ensembl Peptide", "id": "AT5G23350.1", "url": "https://www.ensemblgenomes.org/id/AT5G23350.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Functional annotation of a full-length Arabidopsis cDNA collection.", "journal": "Science", "date": "2002", "authors": "Seki Motoaki, Narusaka Mari, Kamiya Asako, Ishida Junko, Satou 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analysis of Arabidopsis thaliana chromosome 5. III. 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"categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197725", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197725", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G23340", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23340", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMW7", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMW7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW7", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW7", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G23340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23340", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KF28-1", "protein_name": "Partner of paired, isoform B", "gene_name": "Ppa", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MATNTELLPFHHQTIAVLNNLNSHCGGSGSNGAATSGGAAIGGAGAGGAPSWAMDELYQQTELPGLTRTGATTTHHHLLRFTPYALHHRPPHHQLQTLPPALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVRXCVHHDCNACAAKEAARGSYNSQP", "length": 562 }, "evidence": [ { "id": "Q9FMW7", "url": "https://omabrowser.org/oma/group/Q9FMW7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A1D5PZ57-1", "protein_name": "F-box/LRR-repeat protein 14", "gene_name": "FBXL14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"METHISCLFPELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR", "length": 400 }, "evidence": [ { "id": "Q9FMW7", "url": "https://omabrowser.org/oma/group/Q9FMW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N1E6-1", "protein_name": "F-box/LRR-repeat protein 14", "gene_name": "FBXL14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METHISCLFPELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPLFTVRTRGSSRR", "length": 418 }, "evidence": [ { "id": "Q9FMW7", "url": "https://omabrowser.org/oma/group/Q9FMW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FMW7", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMW7" }, { "id": "PF25372", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box/LRR-repeat protein 15-like leucin rich repeat", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 281, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 393, "end_pos": 395 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FMY2-1", "uniprot_ac": "Q9FMY2", "uniprot_id": "Q9FMY2_ARATH", "mass": { "chemical_mass": 15509.0, "monoisotopic_mass": 15509.0 }, "refseq": { "ac": "NP_197709", "name": "mediator-associated-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197709" }, "gene_names": [ { "name": "MKD15.4", "type": "recommended", "evidence": [ { "id": "Q9FMY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2" } ] }, { "name": "MKD15.4", "type": "synonym", "evidence": [ { "id": "NP_197709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197709" } ] }, { "name": "MKD15_4", "type": "synonym", "evidence": [ { "id": "NP_197709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197709" }, { "id": "Q9FMY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2" } ] } ], "protein_names": [ { "name": "Mediator-associated-like protein", "type": "synonym", "evidence": [ { "id": "Q9FMY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2/entry#names_and_taxonomy" } ] }, { "name": "mediator-associated-like protein", "type": "synonym", "evidence": [ { "id": "NP_197709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197709" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMY2", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MKD15.4", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2", "locus": {} } ], "crossref": [ { "id": "832382", "url": "https://www.ncbi.nlm.nih.gov/gene/832382", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G23180", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIAYWDM", "url": "https://omabrowser.org/oma/group/WIAYWDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FMY2", "url": "https://www.orthodb.org/?gene=Q9FMY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_197709", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197709", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G23180", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23180", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMY2", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMY2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPKQPEKIENPPMASAPSSEKESGSTENEYGSSGEETNSSDDEHEEARDNVISTPLSFGQELVSFFKVENLTYLGIDEAKWIAYWDMVKDGPKKREVEKQLKKMLAMQMELFMMRTGFTKEVATVLFKQDNASSSGK", "length": 138, "header": "tr|Q9FMY2-1|Q9FMY2_ARATH Isoform 1 of Mediator-associated-like protein OS=Arabidopsis thaliana OX=3702 GN=MKD15.4 PE=4 SV=1 CANONICAL=Q9FMY2-1" }, "isoforms": [ { "isoform_ac": "Q9FMY2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMY2/entry#Q9FMY2-1", "sequence": { "sequence": "MAPKQPEKIENPPMASAPSSEKESGSTENEYGSSGEETNSSDDEHEEARDNVISTPLSFGQELVSFFKVENLTYLGIDEAKWIAYWDMVKDGPKKREVEKQLKKMLAMQMELFMMRTGFTKEVATVLFKQDNASSSGK", "length": 138, "header": "tr|Q9FMY2-1|Q9FMY2_ARATH Isoform 1 of Mediator-associated-like protein OS=Arabidopsis thaliana OX=3702 GN=MKD15.4 PE=4 SV=1 CANONICAL=Q9FMY2-1" }, "locus": { "chromosome": "5", "start_pos": 7801474, "end_pos": 7801955, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23180.1", "url": "https://www.ensemblgenomes.org/id/AT5G23180.1" }, { "database": "Ensembl Peptide", "id": "AT5G23180.1", "url": "https://www.ensemblgenomes.org/id/AT5G23180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, 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"categories": [ "Protein Classification" ] }, { "id": "PF22970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_201195", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_201195", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G63900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G63900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FMZ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSCDIVPMEAELSPGAIEEWLSTVKHGKMTENGKRRSDLSIKVKRHLSALGWVISYYNKRNKKEQRYKSPKGKWFYSLAKACMSCVDQDSQQQLQIVPKYDLSCLPSNIASESSSDVSNQKQKKSKKRGRVEDLDVKSTAPEKDNHPSADLIKIVPNFDVAKQQQQKKIIMNREGSDTAVFNGDQEKIRIGLNVDVIHEQQKKRRKMASEEIRRPKMVKSLKKVLQVMEKKQQKNKHEKESLRFCRKDCSPDMNCDVCCVCHWGGDLLLCDGCPSAFHHACLGLSSLPEEDLWFCPCCCCDICGSMESPANSKLMACEQCQRRFHLTCLKEDSCIVSSRGWFCSSQCNRVFSALENLLGSKIAVGNDGDLVWTLMRAPNEGEHYDDEQISKLESAVEILHQGFEPTNDVFSGRDLVEELIYRKDRTGVGRGFYTVLIERKNEPITVAAVRVDKDVVEIPLVATLSSYRRSGMCRVLMDELEKQMSQMGVCRLVLPAAKEVVTTWTERFGFSVMNSSERLELVKHGMLDFVGTIMCHKFLQKERAENDSAEESSLTE", "length": 557, "header": "tr|Q9FMZ9-1|Q9FMZ9_ARATH Isoform 1 of Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MGI19.10 PE=4 SV=1 CANONICAL=Q9FMZ9-1" }, "isoforms": [ { "isoform_ac": "Q9FMZ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9/entry#Q9FMZ9-1", "sequence": { "sequence": "MNSCDIVPMEAELSPGAIEEWLSTVKHGKMTENGKRRSDLSIKVKRHLSALGWVISYYNKRNKKEQRYKSPKGKWFYSLAKACMSCVDQDSQQQLQIVPKYDLSCLPSNIASESSSDVSNQKQKKSKKRGRVEDLDVKSTAPEKDNHPSADLIKIVPNFDVAKQQQQKKIIMNREGSDTAVFNGDQEKIRIGLNVDVIHEQQKKRRKMASEEIRRPKMVKSLKKVLQVMEKKQQKNKHEKESLRFCRKDCSPDMNCDVCCVCHWGGDLLLCDGCPSAFHHACLGLSSLPEEDLWFCPCCCCDICGSMESPANSKLMACEQCQRRFHLTCLKEDSCIVSSRGWFCSSQCNRVFSALENLLGSKIAVGNDGDLVWTLMRAPNEGEHYDDEQISKLESAVEILHQGFEPTNDVFSGRDLVEELIYRKDRTGVGRGFYTVLIERKNEPITVAAVRVDKDVVEIPLVATLSSYRRSGMCRVLMDELEKQMSQMGVCRLVLPAAKEVVTTWTERFGFSVMNSSERLELVKHGMLDFVGTIMCHKFLQKERAENDSAEESSLTE", "length": 557, "header": "tr|Q9FMZ9-1|Q9FMZ9_ARATH Isoform 1 of Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MGI19.10 PE=4 SV=1 CANONICAL=Q9FMZ9-1" }, "locus": { "chromosome": "5", "start_pos": 25568644, "end_pos": 25570402, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G63900.1", "url": "https://www.ensemblgenomes.org/id/AT5G63900.1" }, { "database": "Ensembl Peptide", "id": "AT5G63900.1", "url": "https://www.ensemblgenomes.org/id/AT5G63900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G63900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G63900", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "pmid": "" }, { "name": "acyltransferase activity, transferring groups other than amino-acyl groups", "id": "GO:0016747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016747", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ9", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FMZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ9" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 383, "end_pos": 540, "start_aa": "Glu", "end_aa": "Leu", 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"PF04438", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04438", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_201188", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_201188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G63830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G63830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FN06", "url": "https://www.uniprot.org/uniprotkb/Q9FN06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN06-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMPEKTIISSESSNSSPLNPSSTRIICHVCNKQFSQYTCPRCNFRYCSLPCYKSHSVQCTESFMRDNVNDELKQVRSDDQTKRKMLEILKRFHEEEEEDDGGIDSITDDEGLSLPEEIIQKIMNGDEVSLDDLSLEERKGFQRALASGELSKMIQPWDPWWLLASARTINLGLGGTQLVQCVEDEEETTVVSEIPRGPDTPLISLSKLTSTNPSPLLPIHLIDIAYSYCFTLRIYNGEWQSDSLGAATMVLTVSSVLGHNGQPETIKEVLSFCLEQTCSSAYKNLGGGLKFGLNLVDDVICFLSLGSGAMVCLLGDLQRLILGAIKEVKSSSGRDLKKKLKLAERKVFYMMCWVNEQNSEVWEALEPSVRAEKNSVVELNDYRGFPEMKKKDQFRKGGGVVIEEIE", "length": 406, "header": "tr|Q9FN06-1|Q9FN06_ARATH Isoform 1 of HIT-type Zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN=MGI19.3 PE=1 SV=1 CANONICAL=Q9FN06-1" }, "isoforms": [ { "isoform_ac": "Q9FN06-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN06/entry#Q9FN06-1", "sequence": { "sequence": "MMPEKTIISSESSNSSPLNPSSTRIICHVCNKQFSQYTCPRCNFRYCSLPCYKSHSVQCTESFMRDNVNDELKQVRSDDQTKRKMLEILKRFHEEEEEDDGGIDSITDDEGLSLPEEIIQKIMNGDEVSLDDLSLEERKGFQRALASGELSKMIQPWDPWWLLASARTINLGLGGTQLVQCVEDEEETTVVSEIPRGPDTPLISLSKLTSTNPSPLLPIHLIDIAYSYCFTLRIYNGEWQSDSLGAATMVLTVSSVLGHNGQPETIKEVLSFCLEQTCSSAYKNLGGGLKFGLNLVDDVICFLSLGSGAMVCLLGDLQRLILGAIKEVKSSSGRDLKKKLKLAERKVFYMMCWVNEQNSEVWEALEPSVRAEKNSVVELNDYRGFPEMKKKDQFRKGGGVVIEEIE", "length": 406, "header": "tr|Q9FN06-1|Q9FN06_ARATH Isoform 1 of HIT-type Zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN=MGI19.3 PE=1 SV=1 CANONICAL=Q9FN06-1" }, "locus": { "chromosome": "5", "start_pos": 25543331, "end_pos": 25544898, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G63830.1", "url": "https://www.ensemblgenomes.org/id/AT5G63830.1" }, { "database": "Ensembl Peptide", "id": "AT5G63830.1", "url": "https://www.ensemblgenomes.org/id/AT5G63830.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 105, "end_pos": 105, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser105" }, { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr107" }, { "start_pos": 200, "end_pos": 200, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr200" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FN06", "url": "https://www.uniprot.org/uniprotkb/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FN06", "url": "https://www.uniprot.org/uniprotkb/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9FN06", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN06" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT5G63830", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G63830", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RQU8-1", "protein_name": "Zinc finger HIT-type containing 2", "gene_name": "ZNHIT2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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"GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FN06", "url": "https://www.uniprot.org/uniprotkb/Q9FN06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FN06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN06" }, { "id": "PS51083", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51083" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HIT-type", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 59, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 105, 107, 200 ], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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III. 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"Protein" ] } ], "sequence": { "sequence": "MGKSSSSSKIIKDSSNKLRSVKKKKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKKKRRSKLSKKRSRKRYSSSESDDDSDDDRLLKKKKRSKRKDENVGKKKKKVVSRKRRKRDLSSSSTSSEQSDNDGSESDDGKRWSRDRGRRLGKVKDSRSRSRDELEGESEEPDECWQGEDEVIPEKNPRRLKSIVVVSYNYGNGERKEEDDRDVYMTRGGGNRELGYSEDSDEMDGESIDSYSRIRADDNGFGEYNKSETSKVSHTDNSLKDDDLEAILKKRALENLKRFRGVTQKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQKLCDSAVSKDLENSEKILHVINVKESGTALANSASQQDQQSGDTAKVKVSSGLSSCTTKRKLVRPVLSKDSLNLASKKEASGSQDAEAESIDGSTVDKNCLESTLALVTKNEGEHIEPTKVSSTLNAESSSHADTEEVDEVKGGSQSEQKTIDETKDESQYEQKTMTVMRGGEMVQVSYKVYIPKKASSLGRRKLNR", "length": 529, "header": "tr|Q9FN33-1|Q9FN33_ARATH Isoform 1 of Transcriptional regulator ATRX-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FN33-1" }, "isoforms": [ { "isoform_ac": "Q9FN33-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN33/entry#Q9FN33-1", "sequence": { "sequence": "MGKSSSSSKIIKDSSNKLRSVKKKKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKKKRRSKLSKKRSRKRYSSSESDDDSDDDRLLKKKKRSKRKDENVGKKKKKVVSRKRRKRDLSSSSTSSEQSDNDGSESDDGKRWSRDRGRRLGKVKDSRSRSRDELEGESEEPDECWQGEDEVIPEKNPRRLKSIVVVSYNYGNGERKEEDDRDVYMTRGGGNRELGYSEDSDEMDGESIDSYSRIRADDNGFGEYNKSETSKVSHTDNSLKDDDLEAILKKRALENLKRFRGVTQKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQKLCDSAVSKDLENSEKILHVINVKESGTALANSASQQDQQSGDTAKVKVSSGLSSCTTKRKLVRPVLSKDSLNLASKKEASGSQDAEAESIDGSTVDKNCLESTLALVTKNEGEHIEPTKVSSTLNAESSSHADTEEVDEVKGGSQSEQKTIDETKDESQYEQKTMTVMRGGEMVQVSYKVYIPKKASSLGRRKLNR", "length": 529, "header": "tr|Q9FN33-1|Q9FN33_ARATH Isoform 1 of Transcriptional regulator ATRX-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FN33-1" }, "locus": { "chromosome": "5", "start_pos": 21894232, "end_pos": 21896434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G53930.1", "url": "https://www.ensemblgenomes.org/id/AT5G53930.1" }, { "database": "Ensembl Peptide", "id": "AT5G53930.1", "url": "https://www.ensemblgenomes.org/id/AT5G53930.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 171, "end_pos": 171, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser171" }, { "start_pos": 324, "end_pos": 324, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser324" }, { "start_pos": 400, "end_pos": 400, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser400" }, { "start_pos": 403, "end_pos": 403, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" } ], "site_lbl": "Ser403" }, { "start_pos": 408, "end_pos": 408, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" } ], "site_lbl": "Ser408" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FN33", "url": "https://www.uniprot.org/uniprotkb/Q9FN33" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FN33", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN33" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FN33", "url": "https://www.uniprot.org/uniprotkb/Q9FN33" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G53930", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G53930", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FN33", "url": "https://www.uniprot.org/uniprotkb/Q9FN33" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 171, 324, 400, 403, 408 ], "sequon_annotation_sites": [ { "start_pos": 258, "end_pos": 260 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FN36-1", "uniprot_ac": "Q9FN36", "uniprot_id": "Q9FN36_ARATH", "mass": { "chemical_mass": 42210.0, "monoisotopic_mass": 42210.0 }, "refseq": { "ac": "NP_200201", "name": "Serine/threonine-protein kinase WNK (With No Lysine)-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200201" }, "gene_names": [ { "name": "K19P17.6", "type": "synonym", "evidence": [ { "id": "NP_200201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200201" }, { "id": "Q9FN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN36" } ] }, { "name": "K19P17_6", "type": "synonym", "evidence": [ { "id": "NP_200201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200201" }, { "id": "Q9FN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN36" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase WNK (With No Lysine)-like protein", "type": "synonym", "evidence": [ { "id": "NP_200201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_200201" }, { "id": "Q9FN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FN36", "url": "https://www.uniprot.org/uniprotkb/Q9FN36" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FN36", "locus": {} } ], "crossref": [ { "id": "835472", "url": "https://www.ncbi.nlm.nih.gov/gene/835472", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044170", "database": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FN44-1", "uniprot_ac": "Q9FN44", "uniprot_id": "Q9FN44_ARATH", "mass": { "chemical_mass": 527251.0, "monoisotopic_mass": 527251.0 }, "refseq": { "ac": "NP_197702", "name": "Zinc finger, C3HC4 type (RING finger) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197702" }, "gene_names": [ { "name": "MYJ24.15", "type": "recommended", "evidence": [ { "id": "Q9FN44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ] }, { "name": "MYJ24.15", "type": "synonym", "evidence": [ { "id": "NP_197702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197702" } ] }, { "name": "MYJ24_15", "type": "synonym", "evidence": [ { "id": "NP_197702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197702" }, { "id": "Q9FN44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ] } ], "protein_names": [ { "name": "Zinc finger, C3HC4 type (RING finger) family protein", "type": "synonym", "evidence": [ { "id": "NP_197702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197702" }, { "id": "Q9FN44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN44/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MYJ24.15", "url": "https://www.uniprot.org/uniprotkb/Q9FN44", "locus": {} } ], "crossref": [ { "id": "AT5G23110", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G23110", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "832375", "url": "https://www.ncbi.nlm.nih.gov/gene/832375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G23110", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23110", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APWMNAD", "url": "https://omabrowser.org/oma/group/APWMNAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15600", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15600", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15600:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15600:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197702", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G23110", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G23110", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FN44-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLLLEDFGQKVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATKVRLCLDRRVHGSGSLLSDSLAQWQGPSLLAYNDAVFTEEDFVSISRIGGSGKHGQAWKTGRFGVGFNSVYHLTDIPSFVSGKYVVLFDPQGAYLPNISAANPGKRIDYVGSSALSQYKDQFLPYCAFGCDMRSPFNGTLFRFPLRNTEQAASSRLSRQAYFEDDISLMFDQLFEEGVFSLLFLKCVLSIEMYTWDDGDSEPKKLYSCSVSSPNNDTVWHRQAVLRLSKTSISGDREMDAFTLEFLSESEKGNQTKRRTDRFYIVQTMASASSKIGLFAATASKEYDIHLLPWASVAACISDDSSENNILKLGHAFCFLPLPVRTGLTVQVNGYFEVSSNRRGIWYGEDMDRSGKVRSAWNRLLLEDVVAPSFARLLLCLREVLDSRDSYFSLWPSGSFEAPWSILVEQIYKNICNAPVLFSDLDGGKWVSPADAYLHDEEFSGSKDLGDALLQLEMPIVCLPRLVFDMLLKHPSFLLPKVVTPDRVRNFLKECKTLSALKKSLKLVLLEYCLDDLTDDSVCTQASNLKLLPLANGDFGFFSGRTGSVSYFICDELEHMLLQKVYDRVIDKNIPPPLYTRLFAIAESRTANVAIFSIHNLLQLFPRLVPAEWKHRSKISWHPESNRDHPSSSWFVLFWQYLDKRCQSLSLFCDWPILPSTSGYLYIASPQSKLINAEKLPAAVRNVLEKIGGKILNNNIKVEHSDLSSFVSDASYTGVLESIFDAASSDLDGVQNLIYDLNAQEKDELRSFLLDPKWHIGHQIGDLYLRICKILPIHRIYGETSAQESKYSDLVNPPKHLPPLDVPACLLGCEFILCCQGSEEDVLSRYYGIERMRKSNFYRQNVFNRIEVLQPEIRDQVMISILQDLPQLCLEDRLLREELQNLEFVPTVNGPLKRPSVLHDPRNEELYALLEDSDCFPASGFQGSAILDMLQGLGLKTTVSPETILESARLVERLMHKDLEKAHSRGKVLFSFLEVNAVKWLPDQSSEDDGAINRIFSRAATAFRPRNLTCNLVKFWSELKMICWCPVLVSAPFQTLPWPVVTSTVAPPKLVRPKTDMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAMPKIYSILARLLGSDEMDIVKAVLEGSRWIWVGDGFATLSEVVLDGPLQLVPYIRVIPTDLAVFRGLFVELGVREFLTPSDYADVLCRIAVRKGTSPLDPQEIRAAVLIAQQLAEAQFLDKVTIYLPDVSGRLFPSSDLVYNDAPWLTASDNLNSSFSAESTMLLNAKRTMQKFVHGNISNEVAEKLGVRSLRRVLLAESADSMNFSLSGAAEAFGQHEALTTRLKHILEMYADGPGILFELVQNAEDAGASEVTFLLDKTHYGTSSLLSPEMADWQGPALYCFNNSVFTQQDMYAISRIGQASKLEKPFAIGRFGLGFNCVYHFTDIPGFVSGENIVMFDPHANHLPGISPTHPGLRIKFAGRYILDQFPDQFAPFLHFGCDLEHTFPGTLFRFPLRNASVAPRSHIKKETYAPEDVLSLFTSFSGVVSEALIFLRNVKTVSIFTKEGAGHEMQLLHRVCKDHNVGQDTEPKPSSQVFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCILHGWITGECLNAGVSKKNLNLPEMSHKLIPWASVAVHINSVKNENVEDLAASISNIFGPSTISIQNRRNFGGRAFCFLPLPITTGLPAHINAYFELSSNRRDLWFGNDMAGDGKVRSDWNLYLIEEVVVPAYGHLLEKIASELGPCDLFFSVWPVTLGTEPWASLVRKLYSFIANNGLRVLYTKARGGQWISTKQAIYPDFSFPKADELVDVLADAGLPVINISKTVAERFGEACSSLHLMTPQLLRTLLTRRKREFRDRNGLALALEYCLLDLKVPFLADLLYGLPLLPLADGSFTTFNKNGTAERIFFAEEIGYELLKDSLPHQLVDREVPEGVYSKLLAVAQSGESCICLLSCNLLEKLFFKLLPADWHLSEKILWTPGQRGHPTVEWIRVLWSYLKLSCDDLSVFSKWPILPVEDGCLMQLILNSNVIRDDGWSENMSSLLLKCGCRFLNRELPVEHPQLETFVQPPTATGILNALLAISGGHENIKGIFLNVSEGELHELRNFILQSKWFSGGHMNEVHFETIKHLPIFESYRSRKLVSLNCPVKWLKPDGIREDLLDDDFVRLDSERERTIFKRYLQIKEPSKMEFYKACVLNRMSEFLSQQEALLAILHDLNDLVVADVSLQCAISTTPFVLAANGLWQQPSRLYDPRVPALQELLHKEVYFPSEKFSDSKILDALVGLGLRTTLDCSTYLDAARSVSMLHDLGDLEASRYGRRLLFHIKTLSIKLSSKTGEANHDESQNIMSITSEDSFDGETYPEYETETSYLGSLLTQQSEDEFWCQLRSIPWCPICLDPPIEGIPWLESSNLVASPDRVRPKSQMFLVSATMHLLDGECQSSYLHQKLGWMDCLTIDILCRQLIEISKSYKEQKSRSSVNPEFESMLQSQIPLLYTRLQELSRENDFLALKSALSGVPWVWLGDDFVSADVLSFDSPVKFTPYLYVVPSELSDFKELLLELGVRLSFDAADYMNTLQHLQNDIKGSQLTDEQINFVLCVLEAVADCFSEVSSDSDNNSVLVPDSAGFLVPLEDLVYNDAPWVDSSSLSGKRFVHPSINSDMANRLGIQSLRCISLVDNDITQDLPCMDFTKLKELLSLYASKDFLLFDLLELADCCKVKKLHIIFDKREHPRKTLLQHNLGEFQGPAIVAILEGVTLTREEICSLQLLSQWRIKGETLNYGLGLLSCYFMCDLLSIVSGGYFYMFDPQGATLSASTTQAPAGKMFSLIGTNLVERFSDQFNPMLIGQDKAWSLTDSTIIRMPLSTEILKDGFEAGLDRVKQISDQFLENASRILIFLKSVSQVSFSTWEQGNAQPHQDYTLHIDSASAIMRNPFAEKNLKTSKLSRIFGSSNSGVKSRIIEVNLHIGENKLLDRWLVVLSKGSGQSQNMARGRKYLAYNLTPVAGVAAHVSRNGRPVDVHAASPIMSPLPLSGSVNLPVTILGCFLIRNNCGRFLFKNKNERAMSEPQLDAGDILIDAWNKELMSCVRDSYIEIVVEMERLSREHSSSSTESSTARQLALSLKAYGHQLYSFWPRSNQHDDAIEAEVLKPEWECLVEQVIRPFYARVADLPLWQLYSGSLVKAEEGMFLTQPGSEVAVNLLPLTVCSFVKEHYPVFSVPWELLAEVQAVGIPVREVKPKMVRVLLRKSSASIDLRSVDTFIDVLEYCLSDIQFIEALNPEEANMDEGNSTSTSSSMSTQAQAGSSDAFEMMTSLGKALFDFGRVVVEDIGRTGDSIGQRISNNRYSNADPRFLSAVNELKGLPCPTATNHLARLGISELWLGNKEQQALMLPVSARFIHPKVFERSSLADIFLKSSVQAFLKLRSWSLPLLASNMKYLFHDHWVSYISESNSVPWFSWESTSSSSDDSGPSPEWIQLFWKNFNGSADELSLFSDWPLIPAFLGRPILCRVRERHLIFFPPPALQPVSRSGTDMHQTDSDISTTSVSGGPLSELTQRYVSGFDLAQSKHPWLILLLNQCNIPVCDTAYIDCAERCKCLPSPSVSLGQAIASKLAEGKRAGYIADIASFPTFGRDELFTLLANDFSSSGSSYQAYELEVLSSLPIFKTVTGSYTHLQRHGLCIISGDSFLKPYDECCFCYLPDSVECHFLQALGVTVLHNHQTLVRFGLAEFESRSQSEREDILIYVYGNWLDLEVDSDVIEALREAKFVRNSDEFSSELSKSKDLFDPSDTLLVSVFFGERKRFPGERFSSEGWLRILRKAGLRTAAEADVILECAKRVEFLGNERNRSSEEDDFETDLVHSEKDISVELSTLAGSVIEAILLNFAGFYSTAFCNTLGQIACVPAESGFPSLGGRKGGKRVLTRYSEAVLLRDWPLAWSSVPILSTQRFIPPGFSWTALRLKSPPIFSTVLKHLQVIGRNGGEDTLAHWPNDPNVMTIDVTSCEVLKYLEIVWDSLTTSDILELQKVAFLPAANGTRLVGASSLFVRLPINLSPFAFELPSLYLPFLNILKDLGLNDVLSVAAAKDILSKLQKLCGYRRLNPNELRAVMEILHFLCDEINTTKPPEINTIKSDVIVPDDGCRLVHALSCVYVDSFGSRYVRYIDTARLRLVHPLLPERICLDLGVRKLSDVVIEELENAEHIETLDNIGSISLKAVRRKLQSETFQAALWTVSRQATTVDDLSFEVMQHSLQSAAEKIGFVRNIYTRFLLLPNSVDVTFVAKESMIPEWENESHHRTMYFINRHRTSILVSEPPGYISFLDVMATVVSEVLGFPTSLPIGSLFSCPEGSETEITAYLRLCSYSLTNTGTADSSVGQEIMPQDAVQVQLHPLRPFYKGEIVAWKIKQGDKLRYGRVPEDVRPSAGQALYRLKVEMTPGETGLLLSSQVFSFRGTSIENEGPSTLPEVLPAVSDKKSQEISESSRTNKTSSSQPVNEMQLGRVTAKELVEAVHEMLSAAGINMELENQSLLQRTLTLQEELKDSKVAFLLEQERAEASMKEAETAKSQWLCQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFCRLQVNRTIRIFRP", "length": 4706, "header": "tr|Q9FN44-1|Q9FN44_ARATH Isoform 1 of Zinc finger, C3HC4 type (RING finger) family protein OS=Arabidopsis thaliana OX=3702 GN=MYJ24.15 PE=1 SV=1 CANONICAL=Q9FN44-1" }, "isoforms": [ { "isoform_ac": "Q9FN44-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN44/entry#Q9FN44-1", "sequence": { "sequence": "MDSLLLEDFGQKVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATKVRLCLDRRVHGSGSLLSDSLAQWQGPSLLAYNDAVFTEEDFVSISRIGGSGKHGQAWKTGRFGVGFNSVYHLTDIPSFVSGKYVVLFDPQGAYLPNISAANPGKRIDYVGSSALSQYKDQFLPYCAFGCDMRSPFNGTLFRFPLRNTEQAASSRLSRQAYFEDDISLMFDQLFEEGVFSLLFLKCVLSIEMYTWDDGDSEPKKLYSCSVSSPNNDTVWHRQAVLRLSKTSISGDREMDAFTLEFLSESEKGNQTKRRTDRFYIVQTMASASSKIGLFAATASKEYDIHLLPWASVAACISDDSSENNILKLGHAFCFLPLPVRTGLTVQVNGYFEVSSNRRGIWYGEDMDRSGKVRSAWNRLLLEDVVAPSFARLLLCLREVLDSRDSYFSLWPSGSFEAPWSILVEQIYKNICNAPVLFSDLDGGKWVSPADAYLHDEEFSGSKDLGDALLQLEMPIVCLPRLVFDMLLKHPSFLLPKVVTPDRVRNFLKECKTLSALKKSLKLVLLEYCLDDLTDDSVCTQASNLKLLPLANGDFGFFSGRTGSVSYFICDELEHMLLQKVYDRVIDKNIPPPLYTRLFAIAESRTANVAIFSIHNLLQLFPRLVPAEWKHRSKISWHPESNRDHPSSSWFVLFWQYLDKRCQSLSLFCDWPILPSTSGYLYIASPQSKLINAEKLPAAVRNVLEKIGGKILNNNIKVEHSDLSSFVSDASYTGVLESIFDAASSDLDGVQNLIYDLNAQEKDELRSFLLDPKWHIGHQIGDLYLRICKILPIHRIYGETSAQESKYSDLVNPPKHLPPLDVPACLLGCEFILCCQGSEEDVLSRYYGIERMRKSNFYRQNVFNRIEVLQPEIRDQVMISILQDLPQLCLEDRLLREELQNLEFVPTVNGPLKRPSVLHDPRNEELYALLEDSDCFPASGFQGSAILDMLQGLGLKTTVSPETILESARLVERLMHKDLEKAHSRGKVLFSFLEVNAVKWLPDQSSEDDGAINRIFSRAATAFRPRNLTCNLVKFWSELKMICWCPVLVSAPFQTLPWPVVTSTVAPPKLVRPKTDMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAMPKIYSILARLLGSDEMDIVKAVLEGSRWIWVGDGFATLSEVVLDGPLQLVPYIRVIPTDLAVFRGLFVELGVREFLTPSDYADVLCRIAVRKGTSPLDPQEIRAAVLIAQQLAEAQFLDKVTIYLPDVSGRLFPSSDLVYNDAPWLTASDNLNSSFSAESTMLLNAKRTMQKFVHGNISNEVAEKLGVRSLRRVLLAESADSMNFSLSGAAEAFGQHEALTTRLKHILEMYADGPGILFELVQNAEDAGASEVTFLLDKTHYGTSSLLSPEMADWQGPALYCFNNSVFTQQDMYAISRIGQASKLEKPFAIGRFGLGFNCVYHFTDIPGFVSGENIVMFDPHANHLPGISPTHPGLRIKFAGRYILDQFPDQFAPFLHFGCDLEHTFPGTLFRFPLRNASVAPRSHIKKETYAPEDVLSLFTSFSGVVSEALIFLRNVKTVSIFTKEGAGHEMQLLHRVCKDHNVGQDTEPKPSSQVFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCILHGWITGECLNAGVSKKNLNLPEMSHKLIPWASVAVHINSVKNENVEDLAASISNIFGPSTISIQNRRNFGGRAFCFLPLPITTGLPAHINAYFELSSNRRDLWFGNDMAGDGKVRSDWNLYLIEEVVVPAYGHLLEKIASELGPCDLFFSVWPVTLGTEPWASLVRKLYSFIANNGLRVLYTKARGGQWISTKQAIYPDFSFPKADELVDVLADAGLPVINISKTVAERFGEACSSLHLMTPQLLRTLLTRRKREFRDRNGLALALEYCLLDLKVPFLADLLYGLPLLPLADGSFTTFNKNGTAERIFFAEEIGYELLKDSLPHQLVDREVPEGVYSKLLAVAQSGESCICLLSCNLLEKLFFKLLPADWHLSEKILWTPGQRGHPTVEWIRVLWSYLKLSCDDLSVFSKWPILPVEDGCLMQLILNSNVIRDDGWSENMSSLLLKCGCRFLNRELPVEHPQLETFVQPPTATGILNALLAISGGHENIKGIFLNVSEGELHELRNFILQSKWFSGGHMNEVHFETIKHLPIFESYRSRKLVSLNCPVKWLKPDGIREDLLDDDFVRLDSERERTIFKRYLQIKEPSKMEFYKACVLNRMSEFLSQQEALLAILHDLNDLVVADVSLQCAISTTPFVLAANGLWQQPSRLYDPRVPALQELLHKEVYFPSEKFSDSKILDALVGLGLRTTLDCSTYLDAARSVSMLHDLGDLEASRYGRRLLFHIKTLSIKLSSKTGEANHDESQNIMSITSEDSFDGETYPEYETETSYLGSLLTQQSEDEFWCQLRSIPWCPICLDPPIEGIPWLESSNLVASPDRVRPKSQMFLVSATMHLLDGECQSSYLHQKLGWMDCLTIDILCRQLIEISKSYKEQKSRSSVNPEFESMLQSQIPLLYTRLQELSRENDFLALKSALSGVPWVWLGDDFVSADVLSFDSPVKFTPYLYVVPSELSDFKELLLELGVRLSFDAADYMNTLQHLQNDIKGSQLTDEQINFVLCVLEAVADCFSEVSSDSDNNSVLVPDSAGFLVPLEDLVYNDAPWVDSSSLSGKRFVHPSINSDMANRLGIQSLRCISLVDNDITQDLPCMDFTKLKELLSLYASKDFLLFDLLELADCCKVKKLHIIFDKREHPRKTLLQHNLGEFQGPAIVAILEGVTLTREEICSLQLLSQWRIKGETLNYGLGLLSCYFMCDLLSIVSGGYFYMFDPQGATLSASTTQAPAGKMFSLIGTNLVERFSDQFNPMLIGQDKAWSLTDSTIIRMPLSTEILKDGFEAGLDRVKQISDQFLENASRILIFLKSVSQVSFSTWEQGNAQPHQDYTLHIDSASAIMRNPFAEKNLKTSKLSRIFGSSNSGVKSRIIEVNLHIGENKLLDRWLVVLSKGSGQSQNMARGRKYLAYNLTPVAGVAAHVSRNGRPVDVHAASPIMSPLPLSGSVNLPVTILGCFLIRNNCGRFLFKNKNERAMSEPQLDAGDILIDAWNKELMSCVRDSYIEIVVEMERLSREHSSSSTESSTARQLALSLKAYGHQLYSFWPRSNQHDDAIEAEVLKPEWECLVEQVIRPFYARVADLPLWQLYSGSLVKAEEGMFLTQPGSEVAVNLLPLTVCSFVKEHYPVFSVPWELLAEVQAVGIPVREVKPKMVRVLLRKSSASIDLRSVDTFIDVLEYCLSDIQFIEALNPEEANMDEGNSTSTSSSMSTQAQAGSSDAFEMMTSLGKALFDFGRVVVEDIGRTGDSIGQRISNNRYSNADPRFLSAVNELKGLPCPTATNHLARLGISELWLGNKEQQALMLPVSARFIHPKVFERSSLADIFLKSSVQAFLKLRSWSLPLLASNMKYLFHDHWVSYISESNSVPWFSWESTSSSSDDSGPSPEWIQLFWKNFNGSADELSLFSDWPLIPAFLGRPILCRVRERHLIFFPPPALQPVSRSGTDMHQTDSDISTTSVSGGPLSELTQRYVSGFDLAQSKHPWLILLLNQCNIPVCDTAYIDCAERCKCLPSPSVSLGQAIASKLAEGKRAGYIADIASFPTFGRDELFTLLANDFSSSGSSYQAYELEVLSSLPIFKTVTGSYTHLQRHGLCIISGDSFLKPYDECCFCYLPDSVECHFLQALGVTVLHNHQTLVRFGLAEFESRSQSEREDILIYVYGNWLDLEVDSDVIEALREAKFVRNSDEFSSELSKSKDLFDPSDTLLVSVFFGERKRFPGERFSSEGWLRILRKAGLRTAAEADVILECAKRVEFLGNERNRSSEEDDFETDLVHSEKDISVELSTLAGSVIEAILLNFAGFYSTAFCNTLGQIACVPAESGFPSLGGRKGGKRVLTRYSEAVLLRDWPLAWSSVPILSTQRFIPPGFSWTALRLKSPPIFSTVLKHLQVIGRNGGEDTLAHWPNDPNVMTIDVTSCEVLKYLEIVWDSLTTSDILELQKVAFLPAANGTRLVGASSLFVRLPINLSPFAFELPSLYLPFLNILKDLGLNDVLSVAAAKDILSKLQKLCGYRRLNPNELRAVMEILHFLCDEINTTKPPEINTIKSDVIVPDDGCRLVHALSCVYVDSFGSRYVRYIDTARLRLVHPLLPERICLDLGVRKLSDVVIEELENAEHIETLDNIGSISLKAVRRKLQSETFQAALWTVSRQATTVDDLSFEVMQHSLQSAAEKIGFVRNIYTRFLLLPNSVDVTFVAKESMIPEWENESHHRTMYFINRHRTSILVSEPPGYISFLDVMATVVSEVLGFPTSLPIGSLFSCPEGSETEITAYLRLCSYSLTNTGTADSSVGQEIMPQDAVQVQLHPLRPFYKGEIVAWKIKQGDKLRYGRVPEDVRPSAGQALYRLKVEMTPGETGLLLSSQVFSFRGTSIENEGPSTLPEVLPAVSDKKSQEISESSRTNKTSSSQPVNEMQLGRVTAKELVEAVHEMLSAAGINMELENQSLLQRTLTLQEELKDSKVAFLLEQERAEASMKEAETAKSQWLCQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFCRLQVNRTIRIFRP", "length": 4706, "header": "tr|Q9FN44-1|Q9FN44_ARATH Isoform 1 of Zinc finger, C3HC4 type (RING finger) family protein OS=Arabidopsis thaliana OX=3702 GN=MYJ24.15 PE=1 SV=1 CANONICAL=Q9FN44-1" }, "locus": { "chromosome": "5", "start_pos": 7758100, "end_pos": 7775675, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G23110.1", "url": "https://www.ensemblgenomes.org/id/AT5G23110.1" }, { "database": "Ensembl Peptide", "id": "AT5G23110.1", "url": "https://www.ensemblgenomes.org/id/AT5G23110.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1112, "end_pos": 1112, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN44" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser1112" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FN44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN44" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FN44", "url": "https://www.uniprot.org/uniprotkb/Q9FN44" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G23110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G23110", "resource": "KEGG Pathway" } ], "orthologs": 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"MKLNNQKDPAEKLMWERTLSGSGSPTRPVSKLMVTLLLLVSATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQTAVIKSYASPPPSPPPPPPPPQTGFQHVVFGIAASARLWKQRKEYIKIWYKPNQMRSYVWLEKPVTEEDEEDEISLPPVKISGDTSKFPYKNKQGHRSAIRISRIVTETLKLGLKDVRWFVMGDDDTVFVAENLIRVLRKYDHNQMYYIGSLSESHLQNIYFSYGMAYGGGGFAISYPLAVALSKMQDRCIKRYPALYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLFGLLAAHPVAPLVTLHHLDVVEPIFPNMTRVDALKHLQVPAKLDSAGLMQQSICYDKRRKWTVSVSWGFAVQIFRGIFSAREIEMPSRTFLNWYRRADYTAYAFNTRPVSRHPCQKPFVFYMTSTRVHRVTNMTVSRYEIHRVAHPECRWKMANPSDIKTVIVYKKPDPHLWDRSPRRNCCRVKSKKNNTLEISVAVCKEGEVVEVV", "length": 524, "header": "tr|Q9FN55-1|Q9FN55_ARATH Isoform 1 of Transferring glycosyl group transferase (DUF604) OS=Arabidopsis thaliana OX=3702 GN=MYC6.16 PE=1 SV=1 CANONICAL=Q9FN55-1" }, "isoforms": [ { "isoform_ac": "Q9FN55-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN55/entry#Q9FN55-1", "sequence": { "sequence": "MKLNNQKDPAEKLMWERTLSGSGSPTRPVSKLMVTLLLLVSATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQTAVIKSYASPPPSPPPPPPPPQTGFQHVVFGIAASARLWKQRKEYIKIWYKPNQMRSYVWLEKPVTEEDEEDEISLPPVKISGDTSKFPYKNKQGHRSAIRISRIVTETLKLGLKDVRWFVMGDDDTVFVAENLIRVLRKYDHNQMYYIGSLSESHLQNIYFSYGMAYGGGGFAISYPLAVALSKMQDRCIKRYPALYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLFGLLAAHPVAPLVTLHHLDVVEPIFPNMTRVDALKHLQVPAKLDSAGLMQQSICYDKRRKWTVSVSWGFAVQIFRGIFSAREIEMPSRTFLNWYRRADYTAYAFNTRPVSRHPCQKPFVFYMTSTRVHRVTNMTVSRYEIHRVAHPECRWKMANPSDIKTVIVYKKPDPHLWDRSPRRNCCRVKSKKNNTLEISVAVCKEGEVVEVV", "length": 524, "header": "tr|Q9FN55-1|Q9FN55_ARATH Isoform 1 of Transferring glycosyl group transferase (DUF604) OS=Arabidopsis thaliana OX=3702 GN=MYC6.16 PE=1 SV=1 CANONICAL=Q9FN55-1" }, "locus": { "chromosome": "5", "start_pos": 16589390, "end_pos": 16592381, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G41460.1", "url": "https://www.ensemblgenomes.org/id/AT5G41460.1" }, { "database": "Ensembl Peptide", "id": "AT5G41460.1", "url": "https://www.ensemblgenomes.org/id/AT5G41460.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FN55", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN55" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser20" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, 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Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FN55", "url": "https://www.uniprot.org/uniprotkb/Q9FN55" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FN55", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN55" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FN55", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FN55" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FN55", "url": "https://www.uniprot.org/uniprotkb/Q9FN55" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "Q9FN55", "url": "https://www.uniprot.org/uniprotkb/Q9FN55" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acetylglucosaminyltransferase activity", "id": "GO:0008375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008375", "evidence": [ { "database": "UniProtKB", "id": "Q9FN55", "url": "https://www.uniprot.org/uniprotkb/Q9FN55" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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}, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FN56-1", "uniprot_ac": "Q9FN56", "uniprot_id": "Q9FN56_ARATH", "mass": { "chemical_mass": 19139.0, "monoisotopic_mass": 19139.0 }, "refseq": { "ac": "NP_198960", "name": "RING/U-box superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198960" }, "gene_names": [ { "name": "ATL87", "type": "recommended", "evidence": [ { "id": "Q9FN56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN56" } ] }, { "name": "MYC6.15", "type": "synonym", "evidence": [ { "id": "NP_198960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_198960" }, { "id": "Q9FN56", "database": "UniProtKB", "url": 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"MGDEPRFSEKWDFRRKENDFEDSSSDDPDSNSTQHPIIHNPNLESNQIDNGTKTVTREQPVKTRKRRSKKDETKPEKVKQVRKRKPKTVCVEDNKKKDETVMGTDGVGTFMETLLDELTASRERLMDWVKTELCGAPNENVASRPPPNKRGVAAVAAKRPVKKRMTKKKKEEEEKMKKKEEEETKESEKQSKPGESGLEMYIPEEKSSEIAHNGRDRECNAGSLDRLIASGQEMNTPKEKSPEIAQNGGSFDCNGGPLDRFLHSGQSGLGRNYFQQQQESQEALVAQTEMDNSKNETVKGQKSIVLAIQAPNLSKKLKKTSEANTNKNRSSIVEITGPEMQKDHNFGTPFASQLSSSSLQSFPVHSSLFPKLSSSSLLQSFPVPSSLFPSSSQGITPSASNTNFQMRQPVAQTPDLSEFQTGVTGGQGFENSLLHNNGYFSGFPAAFQSNLMAGGYNFPAQLNSATSSQQRDDNNMFGGLMMAGGAIRFSGNRFPEAEVSNCNNGLSDYRTSPGR", "length": 515, "header": "tr|Q9FN68-1|Q9FN68_ARATH Isoform 1 of Stress response NST1-like protein OS=Arabidopsis thaliana OX=3702 GN=MYC6.3 PE=4 SV=1 CANONICAL=Q9FN68-1" }, "isoforms": [ { "isoform_ac": "Q9FN68-1", "url": "https://www.uniprot.org/uniprotkb/Q9FN68/entry#Q9FN68-1", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT5G41320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FN68", "url": "https://www.uniprot.org/uniprotkb/Q9FN68" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FN68", "url": "https://www.uniprot.org/uniprotkb/Q9FN68" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G41320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G41320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FN68", "url": "https://www.uniprot.org/uniprotkb/Q9FN68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 295, "end_pos": 297 }, { "start_pos": 312, "end_pos": 314 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 50, "end_pos": 52 } ] 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OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FNB1-1" }, "isoforms": [ { "isoform_ac": "Q9FNB1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNB1/entry#Q9FNB1-1", "sequence": { "sequence": "MASSSSAVAVTRDEFNAFHKCDRALFRRFVVRLRRDINQSLQVMSFLLYLEKSGLVSNLIVNFNSLPDFFINTVADEVVMCLSCLSYENFSMFVANFGKKIIPLITRMTGEYLTLAVIHQNRESILLDMKKHLTSICYPAFEDICVQAEKEKVIEDMKHLGFSKAVHKAGSSSQFLSEQQATTRTSKVGVFSEDEQAREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHSAAMIPEIVSDGIERNKYTINGKHVWARKYIPRSSINNNLAPSYGVAL", "length": 301, "header": "tr|Q9FNB1-1|Q9FNB1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FNB1-1" }, "locus": { "chromosome": "5", "start_pos": 4385385, "end_pos": 4386386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13620.1", "url": "https://www.ensemblgenomes.org/id/AT5G13620.1" }, { "database": "Ensembl Peptide", "id": "AT5G13620.1", "url": "https://www.ensemblgenomes.org/id/AT5G13620.1" } ] } } ], 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Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNB1", "url": "https://www.uniprot.org/uniprotkb/Q9FNB1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNB1", "url": "https://www.uniprot.org/uniprotkb/Q9FNB1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G13620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13620", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"MVLVEELSDVSSPTNEANQAYSYDDDDDDDGSLTPSMVFDQIMGTSLMLPFHEHPVYNHYSSTGQCDGCPELRENGLHGYNCNTCGLTVHKECAESSPEINHPSHQRHPLMLLTHGLPQEAEDDKCRLCGEKVGKLVYHCSICDFSLDLFCARNPLSLVVYFRKGHEHTLTLMPRLIRFTCNACGLESDRSPYICAQCDFMIHEDCIYLPRVISIIRHEHRISRTYFLGSGDWKCGVCRRRMDGRYGAYSCSICPDYAVHSRCATRRDVWDGLELEDEPEDIEECEEPFRVVSDGVINHFSHREHDLRLEDGLTNRHDENIRCRACVRPVYANTFYSCMQCDDFILHETCANLPRKKRHVLHNHQLTLYPDDNIVMDFPMLRGVFLCTACRRLCSGFRYECCNIKLDVRCGSISEPFFYECHPHPLFQTSLDSKVCETCKEESDYVLTCMDCDYVLDFECATLPPTVRYKYDRHPLKLCYDGDKDMAGSYWCEICEKEMDQNIIFYTCESSGPTIHIECVLGDFRYVKPRLHFEFNKKKWEVALNGINRPGCYKCGFRCKGPFVAVSVDYDISYVCSLLCLWKGETLVYGSIRD", "length": 594, "header": "tr|Q9FNE5-1|Q9FNE5_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=MPO12.30 PE=1 SV=1 CANONICAL=Q9FNE5-1" }, "isoforms": [ { "isoform_ac": "Q9FNE5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNE5/entry#Q9FNE5-1", "sequence": { "sequence": 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Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNE5", "url": "https://www.uniprot.org/uniprotkb/Q9FNE5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNE5", "url": "https://www.uniprot.org/uniprotkb/Q9FNE5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G40320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G40320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNE5", "url": 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"" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31479", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31479", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31479:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31479:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_197810", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_197810", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G24220", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G24220", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRGSLRKLIGGGGEMASDSDRDVFSIFGPFHLTSIDWTNSYHRTSVASSLVNGVYTMERDKQEKRVGSESRAMPWWDFFNFSLVETLIDDYDSSIYGAVFEYKLSNLCQNTSHAKAPPRYVIAFRGTILESDTWMTDVKHNLKFSFNTLHEGGRSLQAIRAIRSMVDKHSEAAIWLAGHSLGAALVLLAGKTMTSFGFLLESYIFNPPISCIPLEQLPGGKKIKGVFQFTKTVVKATVAMVLTDLQVQEDDPKTASWIPYLYVNPADPICAGYIDYFRHKTFMSEIGASHIERIGAGKSVRSLLMGKSSSSDLSTEPLHLLPSADMIVNKNKPTKVMTAHGLHQWWERDSAMRENWESCCIRPYPDGKLEQLTIQ", "length": 376, "header": "tr|Q9FNG0-1|Q9FNG0_ARATH Isoform 1 of Lipase class 3-related protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.3 PE=4 SV=1 CANONICAL=Q9FNG0-1" }, "isoforms": [ { "isoform_ac": "Q9FNG0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0/entry#Q9FNG0-1", "sequence": { "sequence": "MGRGSLRKLIGGGGEMASDSDRDVFSIFGPFHLTSIDWTNSYHRTSVASSLVNGVYTMERDKQEKRVGSESRAMPWWDFFNFSLVETLIDDYDSSIYGAVFEYKLSNLCQNTSHAKAPPRYVIAFRGTILESDTWMTDVKHNLKFSFNTLHEGGRSLQAIRAIRSMVDKHSEAAIWLAGHSLGAALVLLAGKTMTSFGFLLESYIFNPPISCIPLEQLPGGKKIKGVFQFTKTVVKATVAMVLTDLQVQEDDPKTASWIPYLYVNPADPICAGYIDYFRHKTFMSEIGASHIERIGAGKSVRSLLMGKSSSSDLSTEPLHLLPSADMIVNKNKPTKVMTAHGLHQWWERDSAMRENWESCCIRPYPDGKLEQLTIQ", "length": 376, "header": "tr|Q9FNG0-1|Q9FNG0_ARATH Isoform 1 of Lipase class 3-related protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.3 PE=4 SV=1 CANONICAL=Q9FNG0-1" }, "locus": { "chromosome": "5", "start_pos": 8225861, "end_pos": 8227782, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24220.1", "url": "https://www.ensemblgenomes.org/id/AT5G24220.1" }, { "database": "Ensembl Peptide", "id": "AT5G24220.1", "url": "https://www.ensemblgenomes.org/id/AT5G24220.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 303, "end_pos": 303, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser303" }, { "start_pos": 309, "end_pos": 309, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser309" }, { "start_pos": 310, "end_pos": 310, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser310" }, { "start_pos": 311, "end_pos": 311, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser311" }, { "start_pos": 312, "end_pos": 312, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser312" }, { "start_pos": 324, "end_pos": 324, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNG0" } ], "site_lbl": "Ser324" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G24220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG0", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FNG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNG0" }, { "id": "PF01764", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fungal lipase-type", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 194, "start_aa": "Val", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 303, 309, 310, 311, 312, 324 ], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FNG1-1", "uniprot_ac": "Q9FNG1", "uniprot_id": "Q9FNG1_ARATH", "mass": { "chemical_mass": 39446.0, "monoisotopic_mass": 39446.0 }, "refseq": { "ac": "NP_001331221", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331221" }, "gene_names": [ { "name": "MOP9.2", "type": "recommended", "evidence": [ { "id": "Q9FNG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNG1" } ] }, { 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"ath:AT5G24210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G24210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LRYECEC", "url": "https://omabrowser.org/oma/group/LRYECEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31479", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31479", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31479:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31479:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001331221", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001331221", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G24210", "url": 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"Q9FNG1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNG1/entry#Q9FNG1-1", "sequence": { "sequence": "MGNLKKSTRSDELSRSGPPQIPNPDWNNLYHRTTVASCLVQGVYAKERDRENNRNGSESLATPWWKSFNFTLDESEILYDAFDGSIYGAVFQNMINYENTPNSIVVPPRYVIALRGTVPSDVSDWIHNSRIVLEKLHGGGKHMHVIRKIYSLVAKHGNTAVWIAGHSLGAGLALLAGKDMAMSGLPVEAYIFNPPISLIPLEQCGYNHELNFVYRLTRDLFKAGIAKVVDLDEGQEGPRYKNLASWRPHLFVNQSDVICSEYIGYFNHVVTMTEAGLGEISRLASGYSVRRMLFGDGENWSSSSTPDHLHFLPSAFMIVNKTEASEFYNKHGIHQWWNHMLKQSTTFSSY", "length": 350, "header": "tr|Q9FNG1-1|Q9FNG1_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MOP9.2 PE=1 SV=1 CANONICAL=Q9FNG1-1" }, "locus": { "chromosome": "5", "start_pos": 8217191, "end_pos": 8219720, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G24210.1", "url": "https://www.ensemblgenomes.org/id/AT5G24210.1" }, { "database": "Ensembl Peptide", "id": "AT5G24210.1", "url": "https://www.ensemblgenomes.org/id/AT5G24210.1" } ] } } ], "glycosylation": [], 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Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNG2", "url": "https://www.uniprot.org/uniprotkb/Q9FNG2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the 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"categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FNJ4", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FNJ4", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G22670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G22670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FNJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNJ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTKRGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEFHGYYEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGRWSYLGQELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIYPNDALLENLISSCPVLEDLNVSRDVENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRLSSVRDMTMSGTTLKVLSRYMRHEPLPQFPNMIQFYAVFCNSDLEKLPNFLESCPNLKSLVLELEVFKKNDLLILSSSIPKCLRSSLEHVEIHTPISGAEAEMKLVKYFLENSAVLKKFTLQLGCKRMDEESIIFKELLRFRRCSASCEVVVEV", "length": 443, "header": "sp|Q9FNJ4-1|FDL32_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FNJ4-1" }, "isoforms": [ { "isoform_ac": "Q9FNJ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4/entry#Q9FNJ4-1", "sequence": { "sequence": "MSTKRGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEFHGYYEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGRWSYLGQELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIYPNDALLENLISSCPVLEDLNVSRDVENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRLSSVRDMTMSGTTLKVLSRYMRHEPLPQFPNMIQFYAVFCNSDLEKLPNFLESCPNLKSLVLELEVFKKNDLLILSSSIPKCLRSSLEHVEIHTPISGAEAEMKLVKYFLENSAVLKKFTLQLGCKRMDEESIIFKELLRFRRCSASCEVVVEV", "length": 443, "header": "sp|Q9FNJ4-1|FDL32_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FNJ4-1" }, "locus": { "chromosome": "5", "start_pos": 7538192, "end_pos": 7539685, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22670.1", "url": "https://www.ensemblgenomes.org/id/AT5G22670.1" }, { "database": "Ensembl Peptide", "id": "AT5G22670.1", "url": "https://www.ensemblgenomes.org/id/AT5G22670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G22670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNJ4", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FNJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 443, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FNJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FNJ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FNJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNJ4" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": 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II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK0", "url": "https://www.uniprot.org/uniprotkb/Q9FNK0" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G22610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FNK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 502, 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Rich Repeat protein family OS=Arabidopsis thaliana OX=3702 GN=MDJ22.1 PE=4 SV=1 CANONICAL=Q9FNK2-1" }, "locus": { "chromosome": "5", "start_pos": 7504536, "end_pos": 7505838, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G22590.1", "url": "https://www.ensemblgenomes.org/id/AT5G22590.1" }, { "database": "Ensembl Peptide", "id": "AT5G22590.1", "url": "https://www.ensemblgenomes.org/id/AT5G22590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, 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Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK2", "url": "https://www.uniprot.org/uniprotkb/Q9FNK2" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK2", "url": "https://www.uniprot.org/uniprotkb/Q9FNK2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G22590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G22590", "resource": "KEGG Pathway" } ], "orthologs": [], 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"protein_names": [ { "name": "RNA-binding KH domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001330853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330853" }, { "id": "Q9FNK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNK3", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MCL19.25", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3", "locus": {} } ], "crossref": [ { "id": "AT5G46190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46190", "database": "Araport", "categories": [ 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HIFGTHE", "url": "https://omabrowser.org/oma/group/HIFGTHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001330853", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001330853", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G46190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8BC43", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BC43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8BC43-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BC43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNK3", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVERGKRTHNRFRDNNNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQDSIFQHGANVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIMST", "length": 644, "header": "tr|Q9FNK3-1|Q9FNK3_ARATH Isoform 1 of RNA-binding KH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MCL19.25 PE=1 SV=1 CANONICAL=Q9FNK3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8BC43-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3/entry#A0A1P8BC43-1", "sequence": { "sequence": 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"evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46190.2", "url": "https://www.ensemblgenomes.org/id/AT5G46190.2" }, { "database": "Ensembl Peptide", "id": "AT5G46190.2", "url": "https://www.ensemblgenomes.org/id/AT5G46190.2" } ] } }, { "isoform_ac": "Q9FNK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3/entry#Q9FNK3-1", "sequence": { "sequence": "MVERGKRTHNRFRDNNNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQDSIFQHGANVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIMST", "length": 644, "header": "tr|Q9FNK3-1|Q9FNK3_ARATH Isoform 1 of RNA-binding KH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=MCL19.25 PE=1 SV=1 CANONICAL=Q9FNK3-1" }, "locus": { "chromosome": "5", "start_pos": 18723116, "end_pos": 18726240, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46190.3", "url": "https://www.ensemblgenomes.org/id/AT5G46190.3" }, { "database": "Ensembl Peptide", "id": "AT5G46190.3", "url": "https://www.ensemblgenomes.org/id/AT5G46190.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 28, "end_pos": 28, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser28" }, { "start_pos": 31, "end_pos": 31, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser31" }, { "start_pos": 603, "end_pos": 603, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser603" }, { "start_pos": 612, "end_pos": 612, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser612" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK3", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNK3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK3", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G46190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK3", "url": "https://www.uniprot.org/uniprotkb/Q9FNK3" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK3", 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"https://www.uniprot.org/uniprotkb/Q9FNK5" } ] } ], "protein_names": [ { "name": "F-box protein At5g46170", "type": "recommended", "evidence": [ { "id": "Q9FNK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5", "locus": {} } ], "crossref": [ { "id": "Q9FNK5", "url": "https://alphafold.ebi.ac.uk/entry/Q9FNK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G46170", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46170", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834659", "url": "https://www.ncbi.nlm.nih.gov/gene/834659", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FNK5", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FNK5*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044809", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044809", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46170", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IQPNPMR", "url": "https://omabrowser.org/oma/group/IQPNPMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FNK5", "url": "https://www.orthodb.org/?gene=Q9FNK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FNK5", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FNK5", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G46170", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46170", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNK5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVIIPRSDPPSRIHPEPPQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSSSCGGSGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIPPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSESKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF", "length": 395, "header": "sp|Q9FNK5-1|FB285_ARATH Isoform 1 of F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNK5-1" }, "isoforms": [ { "isoform_ac": "Q9FNK5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5/entry#Q9FNK5-1", "sequence": { "sequence": "MAVIIPRSDPPSRIHPEPPQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSSSCGGSGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIPPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSESKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF", "length": 395, "header": "sp|Q9FNK5-1|FB285_ARATH Isoform 1 of F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNK5-1" }, "locus": { "chromosome": "5", "start_pos": 18714864, "end_pos": 18717031, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46170.1", "url": "https://www.ensemblgenomes.org/id/AT5G46170.1" }, { "database": "Ensembl Peptide", "id": "AT5G46170.1", "url": "https://www.ensemblgenomes.org/id/AT5G46170.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G46170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46170", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "heat acclimation", "id": "GO:0010286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010286", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK5", "url": "https://www.uniprot.org/uniprotkb/Q9FNK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FNK5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 395, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FNK5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FNK5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/Q9FNK9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ATDOA12", "url": "https://www.uniprot.org/uniprotkb/Q9FNK9", "locus": {} } ], "crossref": [ { "id": "AT5G46130", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46130", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834655", "url": "https://www.ncbi.nlm.nih.gov/gene/834655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46130", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46130", "database": "KEGG Pathway", 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"url": "https://www.uniprot.org/uniprotkb/Q9FNK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNK9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQPLIRILNPLVYTNVLRKNNLVRWCSSTPIYPFLLIDHLLKIGGSSNGSSSISRRSGSEGENEIIIKSKFLAGEVCEAMSMGLNQSGVNIHMKENTSLRDMDNVRLNIYYKPSDPKSKSVSVHLPPLPKGSQIQNIAMTSLPDLKNDDWVVAIKFSVSQLMLYRHKDLRWINIETTHGHECICPYSSLKYSKKEQRFYTSTPGGDWMCSFGLNFKEKDEPTYHIIDKKDLPQYMLYELEEMNSFTRTDHLVESPSGEQFLISWYYGDAFESDTVVHKTKRFLVFKEKENAKRHKDMYYTENIGDLCIFLGHGEPMCVPASSSPGLKPNCIYFAGHNFGVYDITTQTITLFYTEEGPLRSTAFPYWPHPFSLTPT", "length": 376, "header": "tr|Q9FNK9-1|Q9FNK9_ARATH Isoform 1 of KIB1-4 beta-propeller domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=ATDOA12 PE=4 SV=1 CANONICAL=Q9FNK9-1" }, "isoforms": [ { "isoform_ac": "Q9FNK9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNK9/entry#Q9FNK9-1", "sequence": { "sequence": 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"UniProtKB", "id": "Q9FNK9", "url": "https://www.uniprot.org/uniprotkb/Q9FNK9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNK9", "url": "https://www.uniprot.org/uniprotkb/Q9FNK9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FNL2-1", "uniprot_ac": "Q9FNL2", "uniprot_id": "PP418_ARATH", "mass": { "chemical_mass": 52879.0, "monoisotopic_mass": 52879.0 }, "refseq": {}, "gene_names": [ { "name": "MCL19.15", "type": "synonym", "evidence": [ { "id": "Q9FNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2" } ] } ], "protein_names": [ { "name": "Pentatricopeptide repeat-containing protein At5g46100", "type": "recommended", "evidence": [ { "id": "Q9FNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNL2", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2", "locus": {} } ], "crossref": [ { "id": "Q9FNL2", "url": "https://alphafold.ebi.ac.uk/entry/Q9FNL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT5G46100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G46100", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "834651", "url": "https://www.ncbi.nlm.nih.gov/gene/834651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002885", "url": 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FNL2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FNL2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G46100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FNL2", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNL2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDLDI", "length": 472, "header": "sp|Q9FNL2-1|PP418_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNL2-1" }, "isoforms": [ { "isoform_ac": "Q9FNL2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2/entry#Q9FNL2-1", "sequence": { "sequence": "MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDLDI", "length": 472, "header": "sp|Q9FNL2-1|PP418_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9FNL2-1" }, "locus": { "chromosome": "5", "start_pos": 18694316, "end_pos": 18695856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46100.1", "url": "https://www.ensemblgenomes.org/id/AT5G46100.1" }, { "database": "Ensembl Peptide", "id": "AT5G46100.1", "url": "https://www.ensemblgenomes.org/id/AT5G46100.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat Ludivine, Small Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9FNL2", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2" } ], "reference": [ { "type": "PubMed", "id": "15269332", "url": "https://glygen.org/publication/PubMed/15269332" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNL2", "url": "https://www.uniprot.org/uniprotkb/Q9FNL2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G46000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HITETEF", "url": "https://omabrowser.org/oma/group/HITETEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47293", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47293", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47293:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47293:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01419", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01419", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FNM2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FNM2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_199412", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_199412", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G46000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G46000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FNM2", "url": "https://www.uniprot.org/uniprotkb/Q9FNM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FNM2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKKVTIAYGGSNGNKFDDGVYEGTYDGVRKLIVGEDFHGIVYLKIQYVKNGDVVVKEHGRARGTHITETEFEVKCPDEYITSIWGTCRNDHHRYKSTGGRTFEQLTAADKYDINLAAKMGTPMYWNTVSELQFKTSHGRTSEQFRMPGTGGSNGVSWDDGAYDRLSKLCVGEDAHCVSSVEFHYVKGNDRITHCHGKDSKEHDKDGFISSLTFKTSMNRSSEKFGKPVGTKFQLEAKGFDKIVGFRGRSSVNRINALGANFAVVVVPPVKKLNAKGGVLGNEWDDGIHDDARMITFKLYFNKEYITSVEGHYGKRLAAPNASASAMSSFFTGYMTMLKFNTNRTTYQVLSHSPEYTYEGTSFKLEEKDHKIVGFYGKTEVSLNQIGVYVKPIANA", "length": 396, "header": "sp|Q9FNM2-1|JAL45_ARATH Isoform 1 of Jacalin-related lectin 45 OS=Arabidopsis thaliana OX=3702 GN=JAL45 PE=3 SV=1 CANONICAL=Q9FNM2-1" }, "isoforms": [ { "isoform_ac": "Q9FNM2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FNM2/entry#Q9FNM2-1", "sequence": { "sequence": "MSKKVTIAYGGSNGNKFDDGVYEGTYDGVRKLIVGEDFHGIVYLKIQYVKNGDVVVKEHGRARGTHITETEFEVKCPDEYITSIWGTCRNDHHRYKSTGGRTFEQLTAADKYDINLAAKMGTPMYWNTVSELQFKTSHGRTSEQFRMPGTGGSNGVSWDDGAYDRLSKLCVGEDAHCVSSVEFHYVKGNDRITHCHGKDSKEHDKDGFISSLTFKTSMNRSSEKFGKPVGTKFQLEAKGFDKIVGFRGRSSVNRINALGANFAVVVVPPVKKLNAKGGVLGNEWDDGIHDDARMITFKLYFNKEYITSVEGHYGKRLAAPNASASAMSSFFTGYMTMLKFNTNRTTYQVLSHSPEYTYEGTSFKLEEKDHKIVGFYGKTEVSLNQIGVYVKPIANA", "length": 396, "header": "sp|Q9FNM2-1|JAL45_ARATH Isoform 1 of Jacalin-related lectin 45 OS=Arabidopsis thaliana OX=3702 GN=JAL45 PE=3 SV=1 CANONICAL=Q9FNM2-1" }, "locus": { "chromosome": "5", "start_pos": 18654196, "end_pos": 18656376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G46000.1", "url": "https://www.ensemblgenomes.org/id/AT5G46000.1" }, { "database": "Ensembl Peptide", "id": "AT5G46000.1", "url": "https://www.ensemblgenomes.org/id/AT5G46000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { 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} ] }, { "title": "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.", "journal": "DNA Res.", "date": "1997", "authors": "Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9FNM2", "url": "https://www.uniprot.org/uniprotkb/Q9FNM2" } ], "reference": [ { "type": "PubMed", "id": "9405937", "url": "https://glygen.org/publication/PubMed/9405937" } ] } ], "pathway": [ { "id": "ath:AT5G46000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G46000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FNM2", "url": "https://www.uniprot.org/uniprotkb/Q9FNM2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { 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"site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 117, "start_aa": "Thr", "end_pos": 117, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr117", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 34, "end_pos": 34, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FNQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNQ6" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr34" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FNQ6", "url": "https://www.uniprot.org/uniprotkb/Q9FNQ6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FNQ6", "url": "https://www.uniprot.org/uniprotkb/Q9FNQ6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9FNQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FNQ6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT5G61090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G61090", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { 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] }, { "uniprot_canonical_ac": "Q9FRH9-1", "uniprot_ac": "Q9FRH9", "uniprot_id": "Q9FRH9_ARATH", "mass": { "chemical_mass": 30603.0, "monoisotopic_mass": 30603.0 }, "refseq": {}, "gene_names": [ { "name": "F4F7.31", "type": "synonym", "evidence": [ { "id": "Q9FRH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRH9" } ] }, { "name": "F4F7_31", "type": "synonym", "evidence": [ { "id": "Q9FRH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRH9" } ] } ], "protein_names": [ { "name": "Octicosapeptide/Phox/Bem1p family protein", "type": "synonym", "evidence": [ { "id": "Q9FRH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRH9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FRH9", "url": 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required, redundantly with CORD1, for the formation of the pitted secondary cell wall of metaxylem vessels (PubMed:29133465). Controls disorganization of the parallel cortical microtubule network by modulating microtubule attachment to the plasma membrane in metaxylem vessel cells; this mechanism probably relies on disruption of interactions between ARAC10/ROP11 and cortical microtubules (PubMed:29133465).", "evidence": [ { "database": "UniProtKB", "id": "Q9FRR2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2#function" }, { "database": "PubMed", "id": "29133465", "url": "https://glygen.org/publication/PubMed/29133465" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FRR2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "CORD2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2", "locus": {} } ], "crossref": [ { "id": "Q9FRR2", "url": "https://alphafold.ebi.ac.uk/entry/Q9FRR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G08760", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G08760", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "837398", "url": "https://www.ncbi.nlm.nih.gov/gene/837398", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048297", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048297", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G08760", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G08760", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FANGVKH", "url": "https://omabrowser.org/oma/group/FANGVKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31928", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31928", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31928:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31928:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_172353", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_172353", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G08760", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G08760", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FRR2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FRR2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVPGRHPCVGDPEDIVATHSLGFLSDDKVKNDNNGGVSSKPKERVKASVKANGSGSDGERIIGNRLSVSISRDDSSDGKKPVSALFRAKSAKSSLSLDVKKESLGKLKTSSGSKSIPSSPTSCYSLPNSFAKFANGIKQQQTVKPKLLEKGSPRMGLSEKGRSLLKAESPKVGKKLPMIKNFVQGIEFGAKALRKSWEGNLDIRGSDRTKSSLPRRDLTPDSRSLAAPRRSTSSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTKDKTSRPKSTSVEKKSVAENGLPGNLVKVSVNGKRLAAANIQWSSLPPSLSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLSTAKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAASEKQKLAASWVQAALVTNLSPFSVYSSKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKPTIGSKLVAQGMIRKHRENSSSQKATSVAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVERFLDADVITSSSLSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKETIDRLRKKIYEYLLTHVESAAAALGGGGGSVSSPRPKPIETKAKR", "length": 748, "header": "sp|Q9FRR2-1|CORD2_ARATH Isoform 1 of Protein CORTICAL MICROTUBULE DISORDERING 2 OS=Arabidopsis thaliana OX=3702 GN=CORD2 PE=2 SV=1 CANONICAL=Q9FRR2-1" }, "isoforms": [ { "isoform_ac": "Q9FRR2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2/entry#Q9FRR2-1", "sequence": { "sequence": "MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVPGRHPCVGDPEDIVATHSLGFLSDDKVKNDNNGGVSSKPKERVKASVKANGSGSDGERIIGNRLSVSISRDDSSDGKKPVSALFRAKSAKSSLSLDVKKESLGKLKTSSGSKSIPSSPTSCYSLPNSFAKFANGIKQQQTVKPKLLEKGSPRMGLSEKGRSLLKAESPKVGKKLPMIKNFVQGIEFGAKALRKSWEGNLDIRGSDRTKSSLPRRDLTPDSRSLAAPRRSTSSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTKDKTSRPKSTSVEKKSVAENGLPGNLVKVSVNGKRLAAANIQWSSLPPSLSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLSTAKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAASEKQKLAASWVQAALVTNLSPFSVYSSKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKPTIGSKLVAQGMIRKHRENSSSQKATSVAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVERFLDADVITSSSLSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKETIDRLRKKIYEYLLTHVESAAAALGGGGGSVSSPRPKPIETKAKR", "length": 748, "header": "sp|Q9FRR2-1|CORD2_ARATH Isoform 1 of Protein CORTICAL MICROTUBULE DISORDERING 2 OS=Arabidopsis thaliana OX=3702 GN=CORD2 PE=2 SV=1 CANONICAL=Q9FRR2-1" }, "locus": { "chromosome": "1", "start_pos": 2805044, "end_pos": 2808623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G08760.1", "url": "https://www.ensemblgenomes.org/id/AT1G08760.1" }, { "database": "Ensembl Peptide", "id": "AT1G08760.1", "url": "https://www.ensemblgenomes.org/id/AT1G08760.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 196, "end_pos": 196, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "site_lbl": "Ser196" }, { "start_pos": 197, "end_pos": 197, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "site_lbl": "Ser197" }, { "start_pos": 255, "end_pos": 255, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser255" }, { "start_pos": 299, "end_pos": 299, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser299" }, { "start_pos": 322, "end_pos": 322, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr322" }, { "start_pos": 325, "end_pos": 325, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser325" }, { "start_pos": 327, "end_pos": 327, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser327" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FRR2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9FRR2", "url": "https://www.uniprot.org/uniprotkb/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FRR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FRR2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FRR2", "url": 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}, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FT50", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FT50", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_190800", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190800", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G52320", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52320", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FT50", "url": "https://www.uniprot.org/uniprotkb/Q9FT50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FT50-1", "url": "https://www.uniprot.org/uniprotkb/Q9FT50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSLCVAVRKKEKQKQKKTVVFLPEIPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTGRRVKVCNPSTRQIVELPIMRSKTNVWNWFGHDPFHDEYKVLSLFWEVTKEQTVVRSEHQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYYSARTDANRCVLMSFDLSSEEFNLIELPFENWSRTIHMNYQGKVATCQYMRLASDGFVDVCVLEDADKSQWSNKKTFVLPISQMNFVHGDRLVVGASRDSGKVLMRKANLLRNQHARFFLYDMERNEIARRIEIRPSLLGSFNKTNQFLKVCYTFQTK", "length": 390, "header": "sp|Q9FT50-1|FB202_ARATH Isoform 1 of Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FT50-1" }, "isoforms": [ { "isoform_ac": "Q9FT50-1", "url": "https://www.uniprot.org/uniprotkb/Q9FT50/entry#Q9FT50-1", "sequence": { "sequence": "MGSSLCVAVRKKEKQKQKKTVVFLPEIPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTGRRVKVCNPSTRQIVELPIMRSKTNVWNWFGHDPFHDEYKVLSLFWEVTKEQTVVRSEHQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYYSARTDANRCVLMSFDLSSEEFNLIELPFENWSRTIHMNYQGKVATCQYMRLASDGFVDVCVLEDADKSQWSNKKTFVLPISQMNFVHGDRLVVGASRDSGKVLMRKANLLRNQHARFFLYDMERNEIARRIEIRPSLLGSFNKTNQFLKVCYTFQTK", "length": 390, "header": "sp|Q9FT50-1|FB202_ARATH Isoform 1 of Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FT50-1" }, "locus": { "chromosome": "3", "start_pos": 19403020, "end_pos": 19404192, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52320.1", "url": "https://www.ensemblgenomes.org/id/AT3G52320.1" }, { "database": "Ensembl Peptide", "id": "AT3G52320.1", "url": "https://www.ensemblgenomes.org/id/AT3G52320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { 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E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FT50", "url": "https://www.uniprot.org/uniprotkb/Q9FT50" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FT50", "url": "https://www.uniprot.org/uniprotkb/Q9FT50" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MAJ23.40", "url": "https://www.uniprot.org/uniprotkb/Q9FT64", "locus": {} } ], "crossref": [ { "id": "830932", "url": "https://www.ncbi.nlm.nih.gov/gene/830932", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT5G10680", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001318532", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318532", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT5G10680", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G10680", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FT64", "url": "https://www.uniprot.org/uniprotkb/Q9FT64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FT64-1", "url": "https://www.uniprot.org/uniprotkb/Q9FT64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METNQIEEMDVEVLSSMWPENVGPEADKQFNVEKPAIDLDMLKEVTIEEKPTIADLTRLPELLSLTQQGSSQLTNLVKQWEYMQNNAVRLLREELKNLDRQREEAEAKELKIIEEYNFESHQPEYVSVLDETSDLFRGFRQKRREVLVDSKKIEIYEEFDSKKVDDEENSETVATTTDMNEAVNFEKSKQEEQEEAEVKEEESESSRVKEETAETKAQIEELPEEGTKKEGVQGKKESPTA", "length": 241, "header": "tr|Q9FT64-1|Q9FT64_ARATH Isoform 1 of Calmodulin-binding protein-like protein OS=Arabidopsis thaliana OX=3702 GN=MAJ23.40 PE=4 SV=1 CANONICAL=Q9FT64-1" }, "isoforms": [ { "isoform_ac": "Q9FT64-1", "url": "https://www.uniprot.org/uniprotkb/Q9FT64/entry#Q9FT64-1", "sequence": { "sequence": "METNQIEEMDVEVLSSMWPENVGPEADKQFNVEKPAIDLDMLKEVTIEEKPTIADLTRLPELLSLTQQGSSQLTNLVKQWEYMQNNAVRLLREELKNLDRQREEAEAKELKIIEEYNFESHQPEYVSVLDETSDLFRGFRQKRREVLVDSKKIEIYEEFDSKKVDDEENSETVATTTDMNEAVNFEKSKQEEQEEAEVKEEESESSRVKEETAETKAQIEELPEEGTKKEGVQGKKESPTA", "length": 241, "header": "tr|Q9FT64-1|Q9FT64_ARATH Isoform 1 of Calmodulin-binding protein-like protein OS=Arabidopsis thaliana OX=3702 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G32140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EIWMTIK", "url": "https://omabrowser.org/oma/group/EIWMTIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47993", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47993", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47993:SF134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47993:SF134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FVQ9", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FVQ9", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G32140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G32140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FVQ9", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVQ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMMSDLSLDLVEEILCRVPITSLKAVRSSCKLWNVLSKNRILCKTEARNQFLGFTIMNHRLYSMRFNLHGIGLNENSEEFIDPSIKPIGNLLNQVEISKVFYCEGLLLCVTRNHSSKLVVWNPYLGEIRWIKTRNDYHIGVTYALGYDNNKNHMILRFFSEQGYYEIYDMNSSDSWDCFYGIPNKGLKCYQPGASLNGNAYFLTEGREVMEGYDCLLGFDFTTKKFGPLLSLSFSHDFIETGRLSCVKGEKLAVLYQRCYTYEMEVWVTTKIEPNAVSWSKFLAVEMEPLTSLKFNDDSGSFFIDEEKKIVVVFDIDESERNNTAYIIGDYGCLKEVDLDEVVNPQESVEVGDRIYSFSPFVCSCSYVPSLVKFKEDAEHERKDKKRKSKRKRTNKDGYDFILCFDFTTERFGQILPLPFKHSFRDTWTLSSVKEEKLAVAVLYWKNTCVMIEIWMTIKIDPNVESWSKFLRVDRKPCIDLRFDDRNDSFFIDEEKKVVVFFSSDKVKTSTAYVIGDNRYLRTVDLEKAANSQESVEVGERVYCFSPLVCSCSYYVPSLVKINHNAGRKRKEKKTKRKSKDKQMKLSNKV", "length": 591, "header": "sp|Q9FVQ9-1|FB29_ARATH Isoform 1 of Putative F-box protein At1g32140 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FVQ9-1" }, "isoforms": [ { "isoform_ac": "Q9FVQ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ9/entry#Q9FVQ9-1", "sequence": { "sequence": "MTMMSDLSLDLVEEILCRVPITSLKAVRSSCKLWNVLSKNRILCKTEARNQFLGFTIMNHRLYSMRFNLHGIGLNENSEEFIDPSIKPIGNLLNQVEISKVFYCEGLLLCVTRNHSSKLVVWNPYLGEIRWIKTRNDYHIGVTYALGYDNNKNHMILRFFSEQGYYEIYDMNSSDSWDCFYGIPNKGLKCYQPGASLNGNAYFLTEGREVMEGYDCLLGFDFTTKKFGPLLSLSFSHDFIETGRLSCVKGEKLAVLYQRCYTYEMEVWVTTKIEPNAVSWSKFLAVEMEPLTSLKFNDDSGSFFIDEEKKIVVVFDIDESERNNTAYIIGDYGCLKEVDLDEVVNPQESVEVGDRIYSFSPFVCSCSYVPSLVKFKEDAEHERKDKKRKSKRKRTNKDGYDFILCFDFTTERFGQILPLPFKHSFRDTWTLSSVKEEKLAVAVLYWKNTCVMIEIWMTIKIDPNVESWSKFLRVDRKPCIDLRFDDRNDSFFIDEEKKVVVFFSSDKVKTSTAYVIGDNRYLRTVDLEKAANSQESVEVGERVYCFSPLVCSCSYYVPSLVKINHNAGRKRKEKKTKRKSKDKQMKLSNKV", "length": 591, "header": "sp|Q9FVQ9-1|FB29_ARATH Isoform 1 of Putative F-box protein At1g32140 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FVQ9-1" }, "locus": { "chromosome": "1", "start_pos": 11562742, "end_pos": 11564833, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32140.1", "url": "https://www.ensemblgenomes.org/id/AT1G32140.1" }, { "database": "Ensembl Peptide", "id": "AT1G32140.1", "url": "https://www.ensemblgenomes.org/id/AT1G32140.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 2, "end_pos": 2, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FVQ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVQ9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr2" }, { "start_pos": 5, "end_pos": 5, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FVQ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVQ9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser5" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of 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M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FVQ9", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FVQ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVQ9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FVQ9", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G32140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 488, "end_pos": 490, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FVQ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FVQ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FVQ9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 2, 5 ], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 172, "end_pos": 174 }, { "start_pos": 323, "end_pos": 325 }, { "start_pos": 488, "end_pos": 490 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FVR1-1", "uniprot_ac": "Q9FVR1", "uniprot_id": "Q9FVR1_ARATH", "mass": { "chemical_mass": 45868.0, "monoisotopic_mass": 45868.0 }, "refseq": {}, "gene_names": [ { "name": "F3C3.6", "type": "synonym", "evidence": [ { "id": "Q9FVR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ] }, { "name": "F3C3_6", "type": "synonym", "evidence": [ { "id": "Q9FVR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ] } ], "protein_names": [ { "name": "Beta-casein (DUF760)", "type": "synonym", "evidence": [ { "id": "Q9FVR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "common_name": "Mouse-ear 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAIGSSHGRRLCFNHYLSDSFSKFLSPSSSPSLLPQRCHSFCIPKLGSSSTNENGRGRSVTVRASGDEDSNENFAPLAPVELESPVGQLLEQILRTHPHLLPVTVDEQLEKFAAESESRKADSSSTQDILQKRISEVRDKERRKTLAEIIYCLVVHRFVEKGISMIPRIKPTSDPAGRIDLWPNQEEKLEVIHSADAFEMIQSHLSSVLGDGPAVGPLSSIVQIGKIKLGKLYAASAMYGYFLRRVDQRYQLERTMNTLPKRPEKTRERFEEPSPPYPLWDPDSLIRIQPEEYDPDEYAIQRNEDESSSYGLRSYVTYLDSDTLQRYATIRSKEAMTLIEKQTQALFGRPDIRILEDGKLDTSNDEVLSLSVSGLAMLVLEAVAFGSFLWDSESYVESKYHFLKA", "length": 406, "header": "tr|Q9FVR1-1|Q9FVR1_ARATH Isoform 1 of Beta-casein (DUF760) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR1-1" }, "isoforms": [ { "isoform_ac": "Q9FVR1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1/entry#Q9FVR1-1", "sequence": { "sequence": 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H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FVR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVR1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FVR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVR1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G32160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "pmid": "" }, { "name": "chloroplast stroma", "id": "GO:0009570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009570", "evidence": [ { "database": "UniProtKB", "id": "Q9FVR1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 33, 127 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FVR9-1", "uniprot_ac": "Q9FVR9", "uniprot_id": "Q9FVR9_ARATH", "mass": { "chemical_mass": 61724.0, "monoisotopic_mass": 61724.0 }, "refseq": { "ac": "NP_176088", "name": "FAD/NAD(P)-binding oxidoreductase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176088" }, "gene_names": [ { "name": "F12K22.18", "type": "synonym", "evidence": [ { "id": "NP_176088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176088" }, { "id": "Q9FVR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9" } ] } ], "protein_names": [ { "name": "FAD/NAD(P)-binding oxidoreductase family protein", "type": "synonym", "evidence": [ { "id": "NP_176088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176088" }, { "id": "Q9FVR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FVR9", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9", "locus": {} } ], "crossref": [ { "id": "AT1G57770", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G57770", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842152", "url": "https://www.ncbi.nlm.nih.gov/gene/842152", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G57770", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G57770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VRGMQKF", "url": "https://omabrowser.org/oma/group/VRGMQKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46313:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46313:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01593", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_176088", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G57770", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G57770", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FVR9", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVR9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAANFCGLTLQSPFLYNFSRPTIRSSSFIRSSSSSSASSNGNLKEPFSGEPEADVVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGGAAHSFEIKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESFPCKKYDSWMVYLPEGDFLSRIGPTDFFKDLEKYAGPSAVQEWEKLLGAILPLSSAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFIKMGPKGALGATKLLRPFSEIVDSLELKDPFIRNWIDLLAFLLAGVKSDGILSAEMIYMFAEWYKPGCTLEYPIDGTGAVVEALVRGLEKFGGRLSLKSHVENIVIENGKAVGVKLRNGQFVRARKAVVSNASMWDTLKLLPPGALPESYVKGVNTTPQCESFMHLHLGFDAEGIADDLEIHHIVVNDWDRGVDADQNVVLISVPSVLSPNLAPPGKHVLHAYCPGTEPFGLWEGLDRRSAEYKNLKSQRSEVMWRAVERALGLGFKREKCEVSLVGTPLTHQRFLRRNRGTYGPAIEAGKGTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVPVSKHSQLLDAIGL", "length": 574, "header": "tr|Q9FVR9-1|Q9FVR9_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR9-1" }, "isoforms": [ { "isoform_ac": "Q9FVR9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVR9/entry#Q9FVR9-1", "sequence": { "sequence": "MAANFCGLTLQSPFLYNFSRPTIRSSSFIRSSSSSSASSNGNLKEPFSGEPEADVVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGGAAHSFEIKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESFPCKKYDSWMVYLPEGDFLSRIGPTDFFKDLEKYAGPSAVQEWEKLLGAILPLSSAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFIKMGPKGALGATKLLRPFSEIVDSLELKDPFIRNWIDLLAFLLAGVKSDGILSAEMIYMFAEWYKPGCTLEYPIDGTGAVVEALVRGLEKFGGRLSLKSHVENIVIENGKAVGVKLRNGQFVRARKAVVSNASMWDTLKLLPPGALPESYVKGVNTTPQCESFMHLHLGFDAEGIADDLEIHHIVVNDWDRGVDADQNVVLISVPSVLSPNLAPPGKHVLHAYCPGTEPFGLWEGLDRRSAEYKNLKSQRSEVMWRAVERALGLGFKREKCEVSLVGTPLTHQRFLRRNRGTYGPAIEAGKGTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVPVSKHSQLLDAIGL", "length": 574, "header": "tr|Q9FVR9-1|Q9FVR9_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FVR9-1" }, "locus": { "chromosome": "1", "start_pos": 21395096, "end_pos": 21398300, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G57770.1", "url": "https://www.ensemblgenomes.org/id/AT1G57770.1" }, { "database": "Ensembl Peptide", "id": "AT1G57770.1", "url": "https://www.ensemblgenomes.org/id/AT1G57770.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 156, "start_aa": "Thr", "end_pos": 156, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr156", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 106, "end_pos": 106, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FVR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVR9" } ], "site_lbl": "Ser106" }, { "start_pos": 33, "end_pos": 33, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FVR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVR9" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser33" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, 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National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FVT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVT5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FVT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FVT5" } ], "reference": [ 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"https://www.ebi.ac.uk/interpro/entry/IPR022742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G77420", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EPREWDG", "url": "https://omabrowser.org/oma/group/EPREWDG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_177867", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G77420", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G77420", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FVW6", "url": "https://www.uniprot.org/uniprotkb/Q9FVW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVW6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRALTPRFDTPATLSPFRYRYGSSLAITRRFAPAIVCAKRSPIDGVSDELNLIASQNLDQAPARRLARSAFVDLQLQLDHCLFKKAPSGIRTEEWYERNSKGEDIFCKSWLPKSGDEIKAAVCFCHGYGSTCTFFFDGIAKQIAGFGYGVYAIDHPGFGLSDGLHGHIPSFDDLADNAIEQFTKMKGRSELRNLPRFLLGQSMGGAVALKIHLKEPQAWDGLILVAPMCKISEDVKPPPLVLKTLILMSTLFPKAKLFPKRDLSDFFFRDLSKRKLCEYDVICYDDQTRLKTAVELLNATRDIEMQVDKVSLPLLILHGDTDKVTDPTVSKFLHKHAVSQDKTLKLYPGGYHCILEGDTDENIFTVINDIVAWLDARVDPK", "length": 382, "header": "tr|Q9FVW6-1|Q9FVW6_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MAGL5 PE=1 SV=1 CANONICAL=Q9FVW6-1" }, "isoforms": [ { "isoform_ac": "Q9FVW6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVW6/entry#Q9FVW6-1", "sequence": { "sequence": 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"common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FVW9", "locus": {} } ], "crossref": [ { "id": "844076", "url": "https://www.ncbi.nlm.nih.gov/gene/844076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FVW9", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FVW9*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR007789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G77400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RWRFERP", "url": "https://omabrowser.org/oma/group/RWRFERP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FVW9", "url": "https://www.orthodb.org/?gene=Q9FVW9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35466:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35466:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G77400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G77400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FVW9", "url": "https://www.uniprot.org/uniprotkb/Q9FVW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVW9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], 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"end_pos": 29086925, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G77400.1", "url": "https://www.ensemblgenomes.org/id/AT1G77400.1" }, { "database": "Ensembl Peptide", "id": "AT1G77400.1", "url": "https://www.ensemblgenomes.org/id/AT1G77400.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, 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"https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G47390", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G47390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EHEGNHQ", "url": "https://omabrowser.org/oma/group/EHEGNHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FX09", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FX09", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G47390", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G47390", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FX09", "url": "https://www.uniprot.org/uniprotkb/Q9FX09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX09-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPEEKLPCELIEEILSRVPPESLVRFRTVSKKWNALFDDKMFINNHKMTFRFILATESKFYSVSMTPKIEVRELSLDIPGLELKPKILIDCNGFLLCGMEKEGIVVWNPWLRQAKWIKPKVNQPSLCFNGIGYEYDNMKLESSGYKTLVSYPNELDPTRSVWKIHDFASNSWKYTNLVMSCSSGVTLFGASVSLNGILYWVASHLKNNSLFVLVYYNFSNEKVYKFSDLPCGENHHHDVLVLRIFREDRLSLLKQCHLTKKIEIWVTKNKIRNCSSGDVDSAEWMNFMEVSTLNLPVLVHPSYFIDDKKLVVCSCDQTGQAWIYVVGDNKLISKIQIDSVVGPWPLHCSFFPSLVSIPRSQTKKAALQV", "length": 370, "header": "sp|Q9FX09-1|FB40_ARATH Isoform 1 of Putative F-box protein At1g47390 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FX09-1" }, "isoforms": [ { "isoform_ac": "Q9FX09-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX09/entry#Q9FX09-1", "sequence": { "sequence": "MAPEEKLPCELIEEILSRVPPESLVRFRTVSKKWNALFDDKMFINNHKMTFRFILATESKFYSVSMTPKIEVRELSLDIPGLELKPKILIDCNGFLLCGMEKEGIVVWNPWLRQAKWIKPKVNQPSLCFNGIGYEYDNMKLESSGYKTLVSYPNELDPTRSVWKIHDFASNSWKYTNLVMSCSSGVTLFGASVSLNGILYWVASHLKNNSLFVLVYYNFSNEKVYKFSDLPCGENHHHDVLVLRIFREDRLSLLKQCHLTKKIEIWVTKNKIRNCSSGDVDSAEWMNFMEVSTLNLPVLVHPSYFIDDKKLVVCSCDQTGQAWIYVVGDNKLISKIQIDSVVGPWPLHCSFFPSLVSIPRSQTKKAALQV", "length": 370, "header": "sp|Q9FX09-1|FB40_ARATH Isoform 1 of Putative F-box protein At1g47390 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FX09-1" }, "locus": { "chromosome": "1", "start_pos": 17379544, "end_pos": 17380656, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G47390.1", "url": "https://www.ensemblgenomes.org/id/AT1G47390.1" }, { "database": "Ensembl Peptide", "id": "AT1G47390.1", "url": "https://www.ensemblgenomes.org/id/AT1G47390.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 62, "end_pos": 62, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FX09", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX09" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr62" }, { "start_pos": 67, "end_pos": 67, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FX09", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX09" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr67" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, 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"https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FX09", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX09" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FX09", "url": "https://www.uniprot.org/uniprotkb/Q9FX09" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G47390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G47390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FX09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 370, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9FX09-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9FX09" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FX09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX09" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 47, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 62, 67 ], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 }, { "start_pos": 218, "end_pos": 220 }, { "start_pos": 274, "end_pos": 276 } ] }, "class_list": [], "section_stats": [ { 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0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FX13-1", "uniprot_ac": "Q9FX13", "uniprot_id": "Q9FX13_ARATH", "mass": { "chemical_mass": 63845.0, "monoisotopic_mass": 63845.0 }, "refseq": {}, "gene_names": [ { "name": "F12G12.13", "type": "synonym", "evidence": [ { "id": "Q9FX13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ] }, { "name": "F12G12_13", "type": "synonym", "evidence": [ { "id": "Q9FX13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ] } ], "protein_names": [ { "name": "Ankyrin repeat family protein", "type": "synonym", "evidence": [ { "id": "Q9FX13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX13/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], 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"MMMQEKSHLKSLEKKKMVAPIIDAILANDVSTLLALAEGNLSVLRERYHWDSLGGTVLHLATELGHKEIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNPDVASLILEETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYSKISRWLRFDAKQIRSLSDPNHQQGNKNMGVLSEYKKMQIFETPSKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVYQEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEGKRWLFTTVLSISTLMLGGLFAFMTYKVIRHWLKKMTFNPMMIIMSAFTSISIGVDWLAAGSDGYYFY", "length": 573, "header": "tr|Q9FX13-1|Q9FX13_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FX13-1" }, "isoforms": [ { "isoform_ac": "Q9FX13-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX13/entry#Q9FX13-1", "sequence": { "sequence": "MMMQEKSHLKSLEKKKMVAPIIDAILANDVSTLLALAEGNLSVLRERYHWDSLGGTVLHLATELGHKEIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNPDVASLILEETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYSKISRWLRFDAKQIRSLSDPNHQQGNKNMGVLSEYKKMQIFETPSKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVYQEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEGKRWLFTTVLSISTLMLGGLFAFMTYKVIRHWLKKMTFNPMMIIMSAFTSISIGVDWLAAGSDGYYFY", "length": 573, "header": "tr|Q9FX13-1|Q9FX13_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FX13-1" }, "locus": { "chromosome": "1", "start_pos": 12393426, "end_pos": 12396194, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G34050.1", "url": "https://www.ensemblgenomes.org/id/AT1G34050.1" }, { "database": "Ensembl Peptide", "id": "AT1G34050.1", "url": "https://www.ensemblgenomes.org/id/AT1G34050.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FX13", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FX13", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G34050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G34050", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FX13", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "Q9FX13", "url": "https://www.uniprot.org/uniprotkb/Q9FX13" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"https://www.uniprot.org/uniprotkb/Q9FX16", "locus": {} } ], "crossref": [ { "id": "AT1G34070", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G34070", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "840305", "url": "https://www.ncbi.nlm.nih.gov/gene/840305", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G34070", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G34070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNIFRGR", "url": "https://omabrowser.org/oma/group/NNIFRGR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47481", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47481", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47481:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47481:SF41", "database": "PANTHER", "categories": [ "Protein 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"AT1G34070.1", "url": "https://www.ensemblgenomes.org/id/AT1G34070.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, 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"ath:AT1G34070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G34070", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23032:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23032:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G13310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G13310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FX66", "url": "https://www.uniprot.org/uniprotkb/Q9FX66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX66-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMMQYLIPEPKTKEILYEKTLQAAGPITLGEVKELTSKRKIIEESVNKTSKVIDSTTREMTRGLTSACEQDLHKLGEYLPLLFNLVHYTDKIKRVSNLKIRWSSGLISQTLIQRTCPKFFQVDNIMFEFGMVLFIYAVKLRERAMELVSTDSKKAVAVYREASGVFHHLSHEILPLLQTCLPPGKLPELTPPLCSALSLLCLAEGQAVTTEKAEESGKSASLLSKLHFGIFQFLSEAYALLSSRLTGEYKDLSTRFLEYVTTMGALHELKSQKYLAELLESEDRVGDAVGVLRRALAAAKKSTPSKDDKWIAIFKKEREDVAKNMAKYEKLNDSMMLQKIPIDREIPFPKGEKIVNLIPYTPTRVVRELRFKS", "length": 374, "header": "tr|Q9FX66-1|Q9FX66_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FX66-1" }, "isoforms": [ { "isoform_ac": "Q9FX66-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX66/entry#Q9FX66-1", "sequence": { "sequence": "MTMMQYLIPEPKTKEILYEKTLQAAGPITLGEVKELTSKRKIIEESVNKTSKVIDSTTREMTRGLTSACEQDLHKLGEYLPLLFNLVHYTDKIKRVSNLKIRWSSGLISQTLIQRTCPKFFQVDNIMFEFGMVLFIYAVKLRERAMELVSTDSKKAVAVYREASGVFHHLSHEILPLLQTCLPPGKLPELTPPLCSALSLLCLAEGQAVTTEKAEESGKSASLLSKLHFGIFQFLSEAYALLSSRLTGEYKDLSTRFLEYVTTMGALHELKSQKYLAELLESEDRVGDAVGVLRRALAAAKKSTPSKDDKWIAIFKKEREDVAKNMAKYEKLNDSMMLQKIPIDREIPFPKGEKIVNLIPYTPTRVVRELRFKS", "length": 374, "header": "tr|Q9FX66-1|Q9FX66_ARATH Isoform 1 of Endosomal targeting BRO1-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FX66-1" }, "locus": { "chromosome": "1", "start_pos": 4561028, "end_pos": 4563160, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G13310.1", "url": "https://www.ensemblgenomes.org/id/AT1G13310.1" }, { "database": "Ensembl Peptide", "id": "AT1G13310.1", "url": "https://www.ensemblgenomes.org/id/AT1G13310.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FX66", "url": "https://www.uniprot.org/uniprotkb/Q9FX66" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FX66", "url": "https://www.uniprot.org/uniprotkb/Q9FX66" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G13310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G13310", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54H07-1", "protein_name": "BRO1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQVEKPLKFLFINFELPQSKRVQFEKIIRTQTPQSSTHLSQTSLSRNELIIIIEKSSFQSVITACEKYIPDLYGLMISVEDNNSLRLNEQLSFSWSSITGNKSSFYSGFSLRFELIMSLVVYALAHYNRASEINDCSNESSFDENAKLMVNHLKIAAGIFNFITSVELPRWMNLPEDRPTECRQGFSLAMYELCLSTALSITARKAVKQSTSPSIISKLHCEAWQKAEMTKQFLKDLENSLYKKLPKSLKQIVSNIIIIEYSKTLMFMALNSKAQGKISDALGYFYQVNFSKIKKPSNTKISTILNSIVNDVTIEQQALSRENEVIYFEKRTDINSLPEKPSPMPKSIVNMVTFSPPLPSFMSIN", "length": 366 }, "evidence": [ { "id": "Q9FX66", "url": "https://omabrowser.org/oma/group/Q9FX66/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FX66", "url": "https://www.uniprot.org/uniprotkb/Q9FX66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX66" }, { "id": "PS51180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRO1", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 361, "start_aa": "Tyr", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 333, "end_pos": 335 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FX76-1", "uniprot_ac": "Q9FX76", "uniprot_id": "Q9FX76_ARATH", "mass": { "chemical_mass": 93874.0, "monoisotopic_mass": 93874.0 }, "refseq": {}, "gene_names": [ { "name": "F19K19.8", "type": "synonym", "evidence": [ { "id": "Q9FX76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX76" } ] }, { "name": "F19K19_8", "type": "synonym", "evidence": [ { "id": "Q9FX76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX76" } ] } ], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9FX76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX76/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FX76", "url": "https://www.uniprot.org/uniprotkb/Q9FX76" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FX76", "locus": {} } ], "crossref": [ { "id": "AT1G16630", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G16630", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838232", "url": "https://www.ncbi.nlm.nih.gov/gene/838232", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G16630", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G16630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RSFDKSH", "url": "https://omabrowser.org/oma/group/RSFDKSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34775", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34775", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34775:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34775:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G16630", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G16630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FX76", "url": "https://www.uniprot.org/uniprotkb/Q9FX76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX76-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSPAKNKISVSPSSLFSSSSPSMPSRPNPKQRNSETGDLMRRSFRGNPFSADPSRRNSIGRECSNRVEIGDKENQNDKDQIANVVKGPTKGSKHFMSPTISAVSKINPSPRKKILSDKNEVSRSFDKSHHQVQVKSSVSFSDVISIIGEDKDVDQICIDETKQLREEESHDITVSDFDEILERKSNDNSSFKISPLPPYVPCTFPVFESHEVDPVVAPYDPKKNYLSPRPQFLHYKPNPKIEHRSDECKQLEELFISESSSSDTDLSAEREEEGQQEEEVASQEGVVAVEEQEDDGEERLEAAEEILDVDGEERLEAVESDDEEEEVVVGESIEEEETHQISKQSRFSKTSMLLGWILALGVAYLLLVSSTTFSQQTITDSPFYQFNISPEIIMSASENFEQLGAKLRMWAESSFVYLDKLVSSLREEEGSVPFQFHNLTVLLEDKRLSDAVFQSTSVEIIVDGFIVDSLEVDIEEVNVGHQEPEEESENSGEISLEAVYEEDDNEVEQENEEGKVNLEIVDECDEQAEIKIATDTEVNGGERYSESLSEEGHGGQETDVVEGQEEYEENDQNNMEEAESDAQLLDDVQSAAISSNQQEQTGVANVETVQEEEGVGEIAGGSLSVSEEATDVEHDGNEVEEEESGFGEVVNDAGSEDILLSGQKKVLVLFSTMMVILAAVAAGFLLAKKKTKPVMLQHEDGEPTAISATKVVEHVPVENLIRERLSSLNFKEEEEEVGDDRKREVSSFPSEMSFSFSKNKPLHSCSNKKDDLKEHQSGGGGKKSNDSGESMASSASEYSIGSVSYGSFTTYEKIQKRSGHEEKEMITPVRRSSRIRNHQHSGQ", "length": 845, "header": "tr|Q9FX76-1|Q9FX76_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FX76-1" }, "isoforms": [ { "isoform_ac": "Q9FX76-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX76/entry#Q9FX76-1", "sequence": { "sequence": "MASSPAKNKISVSPSSLFSSSSPSMPSRPNPKQRNSETGDLMRRSFRGNPFSADPSRRNSIGRECSNRVEIGDKENQNDKDQIANVVKGPTKGSKHFMSPTISAVSKINPSPRKKILSDKNEVSRSFDKSHHQVQVKSSVSFSDVISIIGEDKDVDQICIDETKQLREEESHDITVSDFDEILERKSNDNSSFKISPLPPYVPCTFPVFESHEVDPVVAPYDPKKNYLSPRPQFLHYKPNPKIEHRSDECKQLEELFISESSSSDTDLSAEREEEGQQEEEVASQEGVVAVEEQEDDGEERLEAAEEILDVDGEERLEAVESDDEEEEVVVGESIEEEETHQISKQSRFSKTSMLLGWILALGVAYLLLVSSTTFSQQTITDSPFYQFNISPEIIMSASENFEQLGAKLRMWAESSFVYLDKLVSSLREEEGSVPFQFHNLTVLLEDKRLSDAVFQSTSVEIIVDGFIVDSLEVDIEEVNVGHQEPEEESENSGEISLEAVYEEDDNEVEQENEEGKVNLEIVDECDEQAEIKIATDTEVNGGERYSESLSEEGHGGQETDVVEGQEEYEENDQNNMEEAESDAQLLDDVQSAAISSNQQEQTGVANVETVQEEEGVGEIAGGSLSVSEEATDVEHDGNEVEEEESGFGEVVNDAGSEDILLSGQKKVLVLFSTMMVILAAVAAGFLLAKKKTKPVMLQHEDGEPTAISATKVVEHVPVENLIRERLSSLNFKEEEEEVGDDRKREVSSFPSEMSFSFSKNKPLHSCSNKKDDLKEHQSGGGGKKSNDSGESMASSASEYSIGSVSYGSFTTYEKIQKRSGHEEKEMITPVRRSSRIRNHQHSGQ", "length": 845, "header": "tr|Q9FX76-1|Q9FX76_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FX76-1" }, "locus": { "chromosome": "1", "start_pos": 5681973, "end_pos": 5684909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G16630.1", "url": "https://www.ensemblgenomes.org/id/AT1G16630.1" }, { "database": "Ensembl Peptide", "id": "AT1G16630.1", "url": "https://www.ensemblgenomes.org/id/AT1G16630.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 91, "start_aa": "Thr", "end_pos": 91, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr91", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FX76", "url": "https://www.uniprot.org/uniprotkb/Q9FX76" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FX76", "url": "https://www.uniprot.org/uniprotkb/Q9FX76" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": 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], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "NQR", "url": "https://www.uniprot.org/uniprotkb/Q9FX95", "locus": { "chromosome": "CP002686.1", "start_pos": 10350595, "end_pos": 10352033, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G27890", "url": "https://www.ensemblgenomes.org/id/AT3G27890" } ] } } ], "crossref": [ { "id": "AT1G49670", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G49670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05323", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05323", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08250", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08250", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "841391", "url": "https://www.ncbi.nlm.nih.gov/gene/841391", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4I3C3", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4I3C3*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G49670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKHVDTY", "url": "https://omabrowser.org/oma/group/GKHVDTY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175390", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G49670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G49670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I3C3", "url": "https://www.uniprot.org/uniprotkb/F4I3C3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I3C3-1", "url": "https://www.uniprot.org/uniprotkb/F4I3C3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FX95-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIKPGLSALVTGGASGIGRALCLALAEKGVFVTVADFSEEKGQETTSLVREANAKFHQGLSFPSAIFVKCDVTNRGDLLAAFDKHLATFGTLDICINNAGISTPLRFDKDDTDGSKSWKHTINVDLIAVVEGTQLAIKAMKAKQKPGVIINMGSAAGLYPMPVDPIYAASKAGVVLFTRSLAYYRRQGIRINVLCPEFIKTDLAEAIDASILESIGGYMSMDMLIKGAFELITDEKKAGACLWITKRRGLEYWPTPMEETKYLVGSSSRKRPSFKVSTKIEFPQSFEKMIVHTLSHKFRSATRIVRAPLQLPIGPHQVLLKIIYAGVNASDVNFSSGRYFTGGSPKLPFDAGFEGVGLIAAVGESVKNLEVGTPAAVMTFGAYSEYMIVSSKHVLPVPRPDPEVVAMLTSGLTALIALEKAGQMKSGETVLVTAAAGGTGQFAVQLAKLSGNKVIATCGGSEKAKLLKELGVDRVIDYKSENIKTVLKKEFPKGVNIIYESVGGQMFDMCLNALAVYGRLIVIGMISQYQGEKGWEPAKYPGLCEKILAKSQTVAGFFLVQYSQLWKQNLDKLFNLYALGKLKVGIDQKKFIGLNAVADAVEYLHSGKSTGKVVVCIDPAFEQKTSRL", "length": 629, "header": "tr|Q9FX95-1|Q9FX95_ARATH Isoform 1 of ARP protein (REF) OS=Arabidopsis thaliana OX=3702 GN=NQR PE=1 SV=1 CANONICAL=Q9FX95-1" }, "isoforms": [ { "isoform_ac": "F4I3C3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX95/entry#F4I3C3-1", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT1G49670.2" }, { "database": "Ensembl Peptide", "id": "AT1G49670.2", "url": "https://www.ensemblgenomes.org/id/AT1G49670.2" } ] } }, { "isoform_ac": "Q9FX95-1", "url": "https://www.uniprot.org/uniprotkb/Q9FX95/entry#Q9FX95-1", "sequence": { "sequence": "MEIKPGLSALVTGGASGIGRALCLALAEKGVFVTVADFSEEKGQETTSLVREANAKFHQGLSFPSAIFVKCDVTNRGDLLAAFDKHLATFGTLDICINNAGISTPLRFDKDDTDGSKSWKHTINVDLIAVVEGTQLAIKAMKAKQKPGVIINMGSAAGLYPMPVDPIYAASKAGVVLFTRSLAYYRRQGIRINVLCPEFIKTDLAEAIDASILESIGGYMSMDMLIKGAFELITDEKKAGACLWITKRRGLEYWPTPMEETKYLVGSSSRKRPSFKVSTKIEFPQSFEKMIVHTLSHKFRSATRIVRAPLQLPIGPHQVLLKIIYAGVNASDVNFSSGRYFTGGSPKLPFDAGFEGVGLIAAVGESVKNLEVGTPAAVMTFGAYSEYMIVSSKHVLPVPRPDPEVVAMLTSGLTALIALEKAGQMKSGETVLVTAAAGGTGQFAVQLAKLSGNKVIATCGGSEKAKLLKELGVDRVIDYKSENIKTVLKKEFPKGVNIIYESVGGQMFDMCLNALAVYGRLIVIGMISQYQGEKGWEPAKYPGLCEKILAKSQTVAGFFLVQYSQLWKQNLDKLFNLYALGKLKVGIDQKKFIGLNAVADAVEYLHSGKSTGKVVVCIDPAFEQKTSRL", "length": 629, "header": "tr|Q9FX95-1|Q9FX95_ARATH Isoform 1 of ARP protein (REF) OS=Arabidopsis thaliana OX=3702 GN=NQR PE=1 SV=1 CANONICAL=Q9FX95-1" }, "locus": { "chromosome": "1", "start_pos": 18381258, "end_pos": 18386146, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G49670.1", "url": "https://www.ensemblgenomes.org/id/AT1G49670.1" }, { "database": "Ensembl Peptide", "id": "AT1G49670.1", "url": "https://www.ensemblgenomes.org/id/AT1G49670.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 34, "start_aa": "Thr", "end_pos": 34, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 234, "end_pos": 234, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FX95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX95" } ], "site_lbl": "Thr234" }, { "start_pos": 46, "end_pos": 46, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FX95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX95" } ], "site_lbl": "Thr46" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G49670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "Q9FX95", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FX95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX95" }, { "id": "SM00829", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00829" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Enoyl reductase (ER)", "eco_id": "ECO_0000259", "start_pos": 297, "end_pos": 616, "start_aa": "His", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 34 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 46, 234 ], "sequon_annotation_sites": [ { "start_pos": 329, "end_pos": 331 }, { "start_pos": 334, "end_pos": 336 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", 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"IPR017946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G49740", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49740", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANRNCDS", "url": "https://omabrowser.org/oma/group/ANRNCDS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FXA0", "url": "https://www.orthodb.org/?gene=Q9FXA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593:SF134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593:SF134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G49740", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G49740", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FXA0", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXA0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFQRLLLFLLIALLLQSSFLLEISSALKEGKTCITNSNCDAGLHCETCIANTDFRPRCSRTQPINPITKAKGLPFNKYSWLTTHNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQNDIWLCHSFDGTCFNFTAFQPAINILREFQVFLEKNKEEVVTIIIEDYVKSPKGLTKVFDAAGLRKFMFPVSRMPKNGGDWPRLDDMVRKNQRLLVFTSDSHKEATEGIAYQWKYMVENQYGNGGLKVGVCPNRAQSAPMSDKSKSLVLVNHFPDAADVIVACKQNSASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFAACKADGKCG", "length": 359, "header": "tr|Q9FXA0-1|Q9FXA0_ARATH Isoform 1 of PLC-like phosphodiesterases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXA0-1" }, "isoforms": [ { "isoform_ac": "Q9FXA0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0/entry#Q9FXA0-1", "sequence": { "sequence": "MFQRLLLFLLIALLLQSSFLLEISSALKEGKTCITNSNCDAGLHCETCIANTDFRPRCSRTQPINPITKAKGLPFNKYSWLTTHNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQNDIWLCHSFDGTCFNFTAFQPAINILREFQVFLEKNKEEVVTIIIEDYVKSPKGLTKVFDAAGLRKFMFPVSRMPKNGGDWPRLDDMVRKNQRLLVFTSDSHKEATEGIAYQWKYMVENQYGNGGLKVGVCPNRAQSAPMSDKSKSLVLVNHFPDAADVIVACKQNSASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFAACKADGKCG", "length": 359, "header": "tr|Q9FXA0-1|Q9FXA0_ARATH Isoform 1 of PLC-like phosphodiesterases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXA0-1" }, "locus": { "chromosome": "1", "start_pos": 18407400, "end_pos": 18410022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G49740.1", "url": "https://www.ensemblgenomes.org/id/AT1G49740.1" }, { "database": "Ensembl Peptide", "id": "AT1G49740.1", "url": "https://www.ensemblgenomes.org/id/AT1G49740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and 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Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA0", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FXA0", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G49740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G49740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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"evidence": [ { "database": "UniProtKB", "id": "Q9FXA0", "url": "https://www.uniprot.org/uniprotkb/Q9FXA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/Q9FXA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASILSILLLILSLSNLHFTSTTGNNHINDRKSLEIIIGGGNDNNPPPSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQLPPPAPPKPQPSPPTPDLPFASSLLKKVYPVLQRFKDLVADDKLKSWEGPDICNKYLGLKCAIFPKTKHLALASVQFNGLNLRGKIGKILKLDNFLDKLEEVTIFHANSNGFTGSVPDFSNLKFLYELDLSNNKLTGDFPTSVLKGNNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQKLPLNLGSITALYLTFANNRFTGPIPESIGNIKYLQEVLFLNNKLTGCLPYQIGNLTRATVFDVGFNQLTGPIPYSFGCLETMEQLNLAGNKFYGTIPEIVCEIACLQNVSLSNNYFTQVGPKCRKLIKRKIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPCDKNPNRGKPDQERLEEEKAQVSHPVTYNTLNPDRLRNL", "length": 494, "header": "tr|Q9FXA1-1|Q9FXA1_ARATH Isoform 1 of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXA1-1" }, "isoforms": [ { "isoform_ac": "Q9FXA1-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXA1/entry#Q9FXA1-1", "sequence": { "sequence": 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] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 114, "start_aa": "Thr", "end_pos": 114, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr114", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, 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"MSSNQENAKEEKLHVKIKTQELDPKEKGENVEVEMEVKAKSIEKVKAKKDEESSGKSKKDKEKKKGKNVDSEVKEDKDDDKKKDGKMVSKKHEEGHGDLEVKESDVKVEEHEKEHKKGKEKKHEELEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKKSEKGEKDVKEDKKKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALMEEKAEIENQIKDAEGEQ", "length": 522, "header": "tr|Q9FXB5-1|Q9FXB5_ARATH Isoform 1 of MAEBL domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXB5-1" }, "isoforms": [ { "isoform_ac": "Q9FXB5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXB5/entry#Q9FXB5-1", "sequence": { "sequence": "MSSNQENAKEEKLHVKIKTQELDPKEKGENVEVEMEVKAKSIEKVKAKKDEESSGKSKKDKEKKKGKNVDSEVKEDKDDDKKKDGKMVSKKHEEGHGDLEVKESDVKVEEHEKEHKKGKEKKHEELEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKKSEKGEKDVKEDKKKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALMEEKAEIENQIKDAEGEQ", "length": 522, "header": "tr|Q9FXB5-1|Q9FXB5_ARATH Isoform 1 of MAEBL domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FXB5-1" }, "locus": { "chromosome": "1", "start_pos": 21237888, "end_pos": 21240558, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G56660.2", "url": "https://www.ensemblgenomes.org/id/AT1G56660.2" }, { "database": "Ensembl Peptide", "id": "AT1G56660.2", "url": "https://www.ensemblgenomes.org/id/AT1G56660.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 185, "end_pos": 185, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXB5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser185" }, { "start_pos": 424, "end_pos": 424, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXB5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser424" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis 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R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FXB5", "url": "https://www.uniprot.org/uniprotkb/Q9FXB5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FXB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXB5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FXB5", "url": "https://www.uniprot.org/uniprotkb/Q9FXB5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G56660", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G56660", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1B0GR13-1", "protein_name": "Cylicin-1", "gene_name": "Cylc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLSKLDSEKLTIEDVQTSSSSCRREINTTTYDDYILSIQTSEKQNQEHFVLTFPKTPMPDKKKRSGPSELEVAVPIQVKRKIEKDQKPTHVWINQFLRDIFLKSSFSRPFITQAPFKYLYNPQNHYTMAESRKSKNDERRKTLKIKFRGKISSCVVNLEPMRTITNGEPEILGNTEKNPSKSSHKIKLPKTSNSTSETNLEYNNSKKTLEMSLRNGNKNSMNFVLKGNAATCCKDNPNTDSKKSVEEFSDDISECINSSNMDLMLRLNEFRAEFTDLDVWSTNCSQNNAKKPLKTGGKKERDSDIDSGGSKDAKKEGKKKGKRESRKKRNTESSDAESGDSKDGKKKSKHDKKNEIKKKKDTDSTGSGSGASMVSKKGKTEKKSTGKKSTGSTGSESVDSKSTNKVKKQVKKGVMKKAVSTDSESDASSKKSKKDEKKENKGRKKKPIKDTESTDADSESEGDSTGKKNEKKDKKITKKGEKKDAKKNTASSESESDLGVNKKKTKIKEIVSFSDSTSDSYSKAGRRKNVRRSDSESEDSSGFRVLKSTDDSEASSTDSKTGMPGMRRGFRSLSKKTTFNERGKRSVTGRIPSSRERLPFPPCEPFRASPKPVHVCKCKESPSPKARYAPLPGVEWIHKLL", "length": 642 }, "evidence": [ { "id": "Q9FXB5", "url": "https://omabrowser.org/oma/group/Q9FXB5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P35663-1", "protein_name": "Cylicin-1", "gene_name": "CYLC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MVVSLSLHASSSIRKSKTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACELYLYINRNFPFEAKKSKIDGEIYWACEFEPNRFVRTEPNRGLDKSVRLRLIEYNRSVSV", "length": 296, "header": "sp|Q9FXC7-1|FB79_ARATH Isoform 1 of Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FXC7-1" }, "isoforms": [ { "isoform_ac": "Q9FXC7-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXC7/entry#Q9FXC7-1", "sequence": { "sequence": "MVVSLSLHASSSIRKSKTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACELYLYINRNFPFEAKKSKIDGEIYWACEFEPNRFVRTEPNRGLDKSVRLRLIEYNRSVSV", "length": 296, "header": "sp|Q9FXC7-1|FB79_ARATH Isoform 1 of Putative F-box protein At1g67623 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"MSVTGPFSHPTNLNPTAPAFFPAINQHQNQNPSLIPTRFFLPHPPPPPPPPPPPLYFSYFSLPPPPPPPHLPPTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRAFNEIRYRHMQQQEQQQHFHFTTARGLVSGHSLWAHFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTKKLFFASHFHKNFIFNNEHHYYPPPPPPSRMVKSDILMYKQQQKKKKKKYVKKNLGDPYFMINENAITGGEFRDGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKSNVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLAGVEIDEYMPVVFSPPRDGRLSPEPVAIVDPWDKPVDDEDRCCKSRDGFVVSDKKMVGSDGCGFCLSERIENGGV", "length": 527, "header": "tr|Q9FXE0-1|Q9FXE0_ARATH Isoform 1 of Terminal EAR1-like 2 OS=Arabidopsis thaliana OX=3702 GN=TEL2 PE=1 SV=1 CANONICAL=Q9FXE0-1" }, "isoforms": [ { "isoform_ac": "Q9FXE0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0/entry#Q9FXE0-1", "sequence": { "sequence": "MSVTGPFSHPTNLNPTAPAFFPAINQHQNQNPSLIPTRFFLPHPPPPPPPPPPPLYFSYFSLPPPPPPPHLPPTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRAFNEIRYRHMQQQEQQQHFHFTTARGLVSGHSLWAHFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTKKLFFASHFHKNFIFNNEHHYYPPPPPPSRMVKSDILMYKQQQKKKKKKYVKKNLGDPYFMINENAITGGEFRDGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKSNVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLAGVEIDEYMPVVFSPPRDGRLSPEPVAIVDPWDKPVDDEDRCCKSRDGFVVSDKKMVGSDGCGFCLSERIENGGV", "length": 527, "header": "tr|Q9FXE0-1|Q9FXE0_ARATH Isoform 1 of Terminal EAR1-like 2 OS=Arabidopsis thaliana OX=3702 GN=TEL2 PE=1 SV=1 CANONICAL=Q9FXE0-1" }, "locus": { "chromosome": "1", "start_pos": 25407864, "end_pos": 25410165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G67770.1", "url": "https://www.ensemblgenomes.org/id/AT1G67770.1" }, { "database": "Ensembl Peptide", "id": "AT1G67770.1", "url": "https://www.ensemblgenomes.org/id/AT1G67770.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 378, "end_pos": 378, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXE0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXE0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser378" }, { "start_pos": 384, "end_pos": 384, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXE0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXE0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Tyr384" }, { "start_pos": 390, "end_pos": 390, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXE0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXE0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser390" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FXE0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXE0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G67770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G67770", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE0", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FXE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXE0" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 256, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 378, 384, 390 ], "sequon_annotation_sites": [ { "start_pos": 365, "end_pos": 367 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 391, "end_pos": 393 }, { "start_pos": 401, "end_pos": 403 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FXE2-1", "uniprot_ac": "Q9FXE2", "uniprot_id": "SEOC_ARATH", "mass": { "chemical_mass": 77122.0, "monoisotopic_mass": 77122.0 }, "refseq": { "ac": "NP_001319338", "name": "sieve element occlusion protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319338" }, "gene_names": [ { "name": "SEOC", "type": "recommended", "evidence": [ { "id": "Q9FXE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2" } ] }, { "name": "F12A21.8", "type": "synonym", "evidence": [ { "id": "NP_001319338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319338" }, { "id": "Q9FXE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2" } ] }, { "name": "F12A21_8", "type": "synonym", "evidence": [ { "id": "NP_001319338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319338" } ] } ], "protein_names": [ { "name": "Protein SIEVE ELEMENT OCCLUSION C", "type": "recommended", "evidence": [ { "id": "Q9FXE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2/entry#names_and_taxonomy" } ] }, { "name": "AtSEOc", "type": "synonym", "evidence": [ { "id": "Q9FXE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2/entry#names_and_taxonomy" } ] }, { "name": "sieve element occlusion protein", "type": "synonym", "evidence": [ { "id": "NP_001319338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319338" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXE2", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SEOC", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2", "locus": {} } ], "crossref": [ { "id": "Q9FXE2", "url": "https://alphafold.ebi.ac.uk/entry/Q9FXE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G67790", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G67790", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "843105", "url": "https://www.ncbi.nlm.nih.gov/gene/843105", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G67790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G67790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ISHEILC", "url": "https://omabrowser.org/oma/group/ISHEILC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FXE2", "url": "https://www.orthodb.org/?gene=Q9FXE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33232:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33232:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14577", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14577", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9FXE2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9FXE2", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001319338", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319338", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G67790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G67790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FXE2", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXE2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFRRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETILSFVLQNDVSRPLLTENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKAVLVLGVLAATYGGLLLPVHLAICDPVAASIAKLNQLPIERTKFRPWLESLNLLIKAMVDVTKCIIKFEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQAKKSRKTAAELSIESRRAAGELSSLGYQLLNIHTRLNKQVEDCSTQIEEEINQRLRNINIETHQDNQDVLHLLFSLQDDLPLQQYSRQISITEVQDKVTLLLLSKPPVEPLFFLLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWSINLLLDGIHPTFEGREICIFGSENLDWIDEFVSLARKIQNLGFQLELIYLSNQRRDERAMEESSILFSPTLQQLFWLRLESIERSKLKRIVIEPSKPDRVFEEVRNLLDFDYGKHRGWGIIGNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSHTAVVPFEEALTMKVVTCEKCKWPMKRFVAYQ", "length": 664, "header": "sp|Q9FXE2-1|SEOC_ARATH Isoform 1 of Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2 CANONICAL=Q9FXE2-1" }, "isoforms": [ { "isoform_ac": "Q9FXE2-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2/entry#Q9FXE2-1", "sequence": { "sequence": "MNFRRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETILSFVLQNDVSRPLLTENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKAVLVLGVLAATYGGLLLPVHLAICDPVAASIAKLNQLPIERTKFRPWLESLNLLIKAMVDVTKCIIKFEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQAKKSRKTAAELSIESRRAAGELSSLGYQLLNIHTRLNKQVEDCSTQIEEEINQRLRNINIETHQDNQDVLHLLFSLQDDLPLQQYSRQISITEVQDKVTLLLLSKPPVEPLFFLLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWSINLLLDGIHPTFEGREICIFGSENLDWIDEFVSLARKIQNLGFQLELIYLSNQRRDERAMEESSILFSPTLQQLFWLRLESIERSKLKRIVIEPSKPDRVFEEVRNLLDFDYGKHRGWGIIGNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSHTAVVPFEEALTMKVVTCEKCKWPMKRFVAYQ", "length": 664, "header": "sp|Q9FXE2-1|SEOC_ARATH Isoform 1 of Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2 CANONICAL=Q9FXE2-1" }, "locus": { "chromosome": "1", "start_pos": 25417542, "end_pos": 25420099, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G67790.1", 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Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FXE2", "url": "https://www.uniprot.org/uniprotkb/Q9FXE2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants.", "journal": "BMC Plant Biol.", "date": "2010", "authors": "R\u00fcping Boris, Ernst Antonia M, Jekat Stephan B, Nordzieke Steffen, Reineke Anna R, M\u00fcller Boje, Bornberg-Bauer Erich, Pr\u00fcfer Dirk, Noll Gundula A", "evidence": [ { "database": "UniProtKB", "id": 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B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FXG6", "url": "https://www.uniprot.org/uniprotkb/Q9FXG6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer 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"Protein" ] } ], "sequence": { "sequence": "MGKLLCDSTATFQSPSPTVPWREPSTVAVSLEDVDLVDQSAAAAAVDAVEKTMAAATTTAWDEVFGLEEAQRRHLSRLHARGVLWKHPGKDESSASVVFRLSHGGEVSSDGNCLFTASQKAMEARGIDARDLRRRTVRRFLEDFRSASEEEKEVITDAIRHMYSPDLKSGWGIHIVQEEKLLAKKDERESLDSAIEELLQIGMHRETAAESIYRERCLPVNDGLSWSKYMSISGSTEDEYDIITLQYTEDGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVEEENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGADHYEPLIANPSPLISHEKVALVL", "length": 354, "header": "tr|Q9FYA0-1|Q9FYA0_ARATH Isoform 1 of Gap junction beta-4 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYA0-1" }, "isoforms": [ { "isoform_ac": "Q9FYA0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYA0/entry#Q9FYA0-1", "sequence": { "sequence": "MGKLLCDSTATFQSPSPTVPWREPSTVAVSLEDVDLVDQSAAAAAVDAVEKTMAAATTTAWDEVFGLEEAQRRHLSRLHARGVLWKHPGKDESSASVVFRLSHGGEVSSDGNCLFTASQKAMEARGIDARDLRRRTVRRFLEDFRSASEEEKEVITDAIRHMYSPDLKSGWGIHIVQEEKLLAKKDERESLDSAIEELLQIGMHRETAAESIYRERCLPVNDGLSWSKYMSISGSTEDEYDIITLQYTEDGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVEEENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGADHYEPLIANPSPLISHEKVALVL", "length": 354, "header": "tr|Q9FYA0-1|Q9FYA0_ARATH Isoform 1 of Gap junction beta-4 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYA0-1" }, "locus": { "chromosome": "5", "start_pos": 4156501, "end_pos": 4158554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13100.1", "url": "https://www.ensemblgenomes.org/id/AT5G13100.1" }, { "database": "Ensembl Peptide", "id": "AT5G13100.1", "url": "https://www.ensemblgenomes.org/id/AT5G13100.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": 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Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA0", "url": "https://www.uniprot.org/uniprotkb/Q9FYA0" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA0", "url": "https://www.uniprot.org/uniprotkb/Q9FYA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G13100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13100", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { 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"evidence": [ { "id": "Q9FYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3", "locus": {} } ], "crossref": [ { "id": "831146", "url": "https://www.ncbi.nlm.nih.gov/gene/831146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9FYA3", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9FYA3*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G13070", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCPWNEK", "url": "https://omabrowser.org/oma/group/YCPWNEK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9FYA3", "url": "https://www.orthodb.org/?gene=Q9FYA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G13070", "url": 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"MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRALTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHPDNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAESARI", "length": 183, "header": "tr|Q9FYA3-1|Q9FYA3_ARATH Isoform 1 of MSF1-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYA3-1" }, "locus": { "chromosome": "5", "start_pos": 4147596, "end_pos": 4149391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G13070.1", "url": "https://www.ensemblgenomes.org/id/AT5G13070.1" }, { "database": "Ensembl Peptide", "id": "AT5G13070.1", "url": "https://www.ensemblgenomes.org/id/AT5G13070.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G13070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G13070", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZPP1-1", "protein_name": "PRELI/MSF1 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDASGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLGSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFVEK", "length": 194 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P35200-1", "protein_name": "Protein UPS2, mitochondrial", "gene_name": "UPS2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKLFQNSYDFNYPWDQVTAANWKKYPNEISTHVIAVDVLRRELKDQGKVLVTERLITVKQGVPKWIMMMLGGTNMSHVREVSVVDLNKKSLTMRSCNLTMCNLLKVYETVTYSPHPDDSANKTLFQQEAQITAYGSIRKLCNKMEDWSVQRFCENAKKGKMGFDAVLQVFSENWEKHVDDLSNQLVSKVNETMEDVKISAGTLLKGTERSGRTILQQNIDLFRDAYNHEN", "length": 230 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54G07-1", "protein_name": "Protein slowmo homolog", "gene_name": "slmo", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPLFETIKHTYKHLWSDASTASFRKYPSPERPDILSIDILSKEIDPTTGVLKCTKLIICKGNTPSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEEWTLFTQEATVTSSIFGVARKMEAFCLDRFVANAGKGRKIMEDTIIKVQKEAEESLASFDKTFTSIKHEAEQSFEKAFSTAEDILPIIKLDDKQSQTTQNTQSNNNKKK", "length": 228 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q58DB0-1", "protein_name": "PRELI domain containing protein 3B", "gene_name": "PRELID3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTILTQEAIITVKGVSLGSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFVEK", "length": 194 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6P9U4-1", "protein_name": "PRELI domain containing protein 3B", "gene_name": "Prelid3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPIRRTMELKSTNISFTNMVSVDERLTYKPHPQDPEKTVLTQEALITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELAASARGSIRTPMAAAAALVDK", "length": 195 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CYY7-1", "protein_name": "PRELI domain containing protein 3B", "gene_name": "Prelid3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPHLQDPEKTVLTQEALITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIEELAASARGSIRTPMAAAAALVDK", "length": 195 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V3U9-1", "protein_name": "Protein slowmo", "gene_name": "slmo", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKIWTSEHIFNHPWETVTQAAWRKYPNPMTPSIIGTDVVERRVVDGVLHTHRLVQSKWYFPKWTHALIGTAKTCFASERSTVDPERKQMVLKTNNLTFCRNISVDEVLYYEPHPSDASKTLLKQEATVTVFGVPLSHYMEDLLTSTISTNAGKGRQGLEWVIGLINTEVKGIARGTDELLHNTRRSIDEVTESARKSMDEISAQAAKAAKAMHIT", "length": 215 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y3B1-1", "protein_name": "PRELI domain containing protein 3B", "gene_name": "PRELID3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIEELTASARGTIRTPMAAAAFAEK", "length": 194 }, "evidence": [ { "id": "Q9FYA3", "url": "https://omabrowser.org/oma/group/Q9FYA3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidic acid transfer activity", "id": "GO:1990050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990050", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phospholipid transport", "id": "GO:0015914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015914", "evidence": [ { "database": "UniProtKB", "id": "Q9FYA3", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYA3" }, { "id": "PS50904", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50904" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PRELI/MSF1", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 181, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FYC3-1", "uniprot_ac": "Q9FYC3", "uniprot_id": "Q9FYC3_ARATH", "mass": { "chemical_mass": 42180.0, "monoisotopic_mass": 42180.0 }, "refseq": { "ac": "NP_190073", "name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190073" }, "gene_names": [ { "name": "FAMT-L", "type": "recommended", "evidence": [ { "id": "Q9FYC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3" } ] } ], "protein_names": [ { "name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_190073", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190073" }, { "id": "Q9FYC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYC3", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "FAMT-L", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3", "locus": {} } ], "crossref": [ { "id": "AT3G44870", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G44870", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823621", "url": "https://www.ncbi.nlm.nih.gov/gene/823621", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G44870", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44870", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HFAHSSM", "url": "https://omabrowser.org/oma/group/HFAHSSM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190073", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190073", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44870", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44870", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FYC3", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FYC3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTSFTMIGGEGPNSYRDHSKYQGALVEAAKEKINEAISTKLDIDFTSNLVNIADFGCSSGPNTFTAVQTLIDAVENKYKKESNIEFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPRNSLHLGVSAYSLHFISKIPKEVKDRDSPVWNKDIHCSGSSKEVAKLYLGQYKIDVGSFLNARAQELVSGGLLLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQGLIDQQKLDTFKLPIYAPQADELKQIIEDNGCFTIEVFENIIHAKGEYPLDPEFLTVSFKVTVGGSVASLFGQDGMEKTFELVKEKTQEMLPQIAKAKPGMQYLIVLRRNCFHDLFRSLKRDLNNVIAMMCVCVCMCCIVCYFK", "length": 379, "header": "tr|Q9FYC3-1|Q9FYC3_ARATH Isoform 1 of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FAMT-L PE=4 SV=1 CANONICAL=Q9FYC3-1" }, "isoforms": [ { "isoform_ac": "Q9FYC3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3/entry#Q9FYC3-1", "sequence": { "sequence": "MSTSFTMIGGEGPNSYRDHSKYQGALVEAAKEKINEAISTKLDIDFTSNLVNIADFGCSSGPNTFTAVQTLIDAVENKYKKESNIEFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPRNSLHLGVSAYSLHFISKIPKEVKDRDSPVWNKDIHCSGSSKEVAKLYLGQYKIDVGSFLNARAQELVSGGLLLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQGLIDQQKLDTFKLPIYAPQADELKQIIEDNGCFTIEVFENIIHAKGEYPLDPEFLTVSFKVTVGGSVASLFGQDGMEKTFELVKEKTQEMLPQIAKAKPGMQYLIVLRRNCFHDLFRSLKRDLNNVIAMMCVCVCMCCIVCYFK", "length": 379, "header": "tr|Q9FYC3-1|Q9FYC3_ARATH Isoform 1 of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FAMT-L PE=4 SV=1 CANONICAL=Q9FYC3-1" }, "locus": { "chromosome": "3", "start_pos": 16382219, "end_pos": 16383605, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44870.1", "url": "https://www.ensemblgenomes.org/id/AT3G44870.1" }, { "database": "Ensembl Peptide", "id": "AT3G44870.1", "url": "https://www.ensemblgenomes.org/id/AT3G44870.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FYC3", "url": "https://www.uniprot.org/uniprotkb/Q9FYC3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete 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"comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr384" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr428" }, { "start_pos": 429, "end_pos": 429, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser429" }, { "start_pos": 459, "end_pos": 459, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser459" }, { "start_pos": 462, "end_pos": 462, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": 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Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9FYD1", "url": "https://www.uniprot.org/uniprotkb/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": 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"authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYD1", "url": "https://www.uniprot.org/uniprotkb/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9FYD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYD1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR 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"gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0", "locus": {} } ], "crossref": [ { "id": "AT1G24430", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G24430", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839059", "url": "https://www.ncbi.nlm.nih.gov/gene/839059", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G24430", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G24430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIMRSAL", "url": "https://omabrowser.org/oma/group/NIMRSAL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623", "database": "PANTHER", "categories": [ "Protein 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"MGLEITVTSQELVKPSPRNLNHPPCHHHLSFLDQLAPPIFMPFLFFYHNKTNLSDKERSDHIKSSLSEILNLYYPLAGRIKNSGDVVVCNDVGVSFVEAKADCNMSQILENPNPNELNKLHPFEFHEVSDVPLTVQLTFFECGGLALGIGLSHKLCDALSGLIFVNSWAAFARGQTDEIITPSFDLAKMFPPCDIENLNMATGITKENIVTRRFVFLRSSVESLRERFSGNKKIRATRVEVLSVFIWSRFMASTNHDDKTGKIYTLIHPVNLRRQADPDIPDNMFGNIMRFSVTVPMMIINENDEEKASLVDQMREEIRKIDAVYVKKLQEDNRGHLEFLNKQASGFVNGEIVSFSFTSLCKFPVYEADFGWGKPLWVASARMSYKNLVAFIDTKEGDGIEAWINLDQNDMSRFEADEELLRYVSSNPSVMVSVS", "length": 435, "header": "tr|Q9FYM0-1|Q9FYM0_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FYM0-1" }, "isoforms": [ { "isoform_ac": "Q9FYM0-1", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0/entry#Q9FYM0-1", "sequence": { "sequence": 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H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM0", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM0", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G24430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G24430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM0", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acyltransferase activity", "id": "GO:0016746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016746", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM0", "url": "https://www.uniprot.org/uniprotkb/Q9FYM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ 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"O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 19, "start_aa": "Thr", "end_pos": 19, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 215, "end_pos": 215, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FYM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FYM1" } ], "site_lbl": "Ser215" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", 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"UniProtKB", "id": "Q9FYM1", "url": "https://www.uniprot.org/uniprotkb/Q9FYM1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM1", "url": "https://www.uniprot.org/uniprotkb/Q9FYM1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G24420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G24420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM1", "url": "https://www.uniprot.org/uniprotkb/Q9FYM1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acyltransferase activity", "id": "GO:0016746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016746", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM1", "url": "https://www.uniprot.org/uniprotkb/Q9FYM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 19 ], "snv_sites": [], "glycation_sites": [], 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Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM2", "url": "https://www.uniprot.org/uniprotkb/Q9FYM2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FYM2", "url": "https://www.uniprot.org/uniprotkb/Q9FYM2" } ], "reference": [ { 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Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FZ23", "url": "https://www.uniprot.org/uniprotkb/Q9FZ23" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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"evidence": [ { "database": "UniProtKB", "id": "Q9FZ34", "url": "https://www.uniprot.org/uniprotkb/Q9FZ34" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FZ34", "url": "https://www.uniprot.org/uniprotkb/Q9FZ34" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G54980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G54980", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme 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Classification" ] }, { "id": "PTHR31656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06830", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06830", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175886", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175886", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G54890", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G54890", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FZ41", "url": "https://www.uniprot.org/uniprotkb/Q9FZ41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FZ41-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZ41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGDLRNGVYVGLVVMLYACIVVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKACVIDCFNPICKATCRNRKPNCNGKGSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLGLIFGPNSKTFSLEATKAEKWDHQVDHLRLSYEGKEISLPKGDTSVWSPPLGDYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLETSCNACVYSGGSRSLDKIEPLLLNQNTVDCTGGSSSGVGIFCRK", "length": 347, "header": "tr|Q9FZ41-1|Q9FZ41_ARATH Isoform 1 of Late embryogenesis abundant (LEA) protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZ41-1" }, "isoforms": [ { "isoform_ac": "Q9FZ41-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZ41/entry#Q9FZ41-1", "sequence": { "sequence": 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OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZ43-1" }, "locus": { "chromosome": "1", "start_pos": 5755588, "end_pos": 5756895, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G16810.1", "url": "https://www.ensemblgenomes.org/id/AT1G16810.1" }, { "database": "Ensembl Peptide", "id": "AT1G16810.1", "url": "https://www.ensemblgenomes.org/id/AT1G16810.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 52, "end_pos": 52, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ43" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" 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large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9FZ43", "url": "https://www.uniprot.org/uniprotkb/Q9FZ43" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ43" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ43" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FZ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZ43" } ], 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Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FZD4", "url": "https://www.uniprot.org/uniprotkb/Q9FZD4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek Boris, Taconnat 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"categories": [ "Protein Classification" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G26610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FZE5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQFKERKFVCKFCSKRFPCGKSLGGHIRTHMNENSADSDEDEADKLKMIDENGGQSSYGLRENPKKNKRFVDHRQIMALKQQQQQQQLQELRRCRECGKGFVSSKALCGHMACHSEREKIVMDSQSDTEASSSPIRRRSKRVVVKPHHKAAFVVGGNGIMNQSISASSDASEIEPEQEEMARSLMMLSRDSSFKKGHNSLAESSDNNSVILETKSSSGEQVKMFNVKNVEELCKKNKLVVDNQMRSGEENGDVHYDSDNSDSGYFRNGPKKLDSDVSVDGFFRNKTIMGSGSGFNSSPTKQDRDMNRFRKEWYKEGGSGSGSGSGRSSTKYDLRKSKRGFPSHGRKKIKYEFTESVYDSGEHSLETDSCADTNRTIKIHSKSPMVKKANGAKKKSKGHECPICFRVFKSGQALGGHKRSHFIGNQEHRTLVIQHQVAHEMHTLIDLNLPAPIDE", "length": 455, "header": "tr|Q9FZE5-1|Q9FZE5_ARATH Isoform 1 of C2H2-like zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FZE5-1" }, "isoforms": [ { "isoform_ac": "Q9FZE5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5/entry#Q9FZE5-1", "sequence": { "sequence": "MEQFKERKFVCKFCSKRFPCGKSLGGHIRTHMNENSADSDEDEADKLKMIDENGGQSSYGLRENPKKNKRFVDHRQIMALKQQQQQQQLQELRRCRECGKGFVSSKALCGHMACHSEREKIVMDSQSDTEASSSPIRRRSKRVVVKPHHKAAFVVGGNGIMNQSISASSDASEIEPEQEEMARSLMMLSRDSSFKKGHNSLAESSDNNSVILETKSSSGEQVKMFNVKNVEELCKKNKLVVDNQMRSGEENGDVHYDSDNSDSGYFRNGPKKLDSDVSVDGFFRNKTIMGSGSGFNSSPTKQDRDMNRFRKEWYKEGGSGSGSGSGRSSTKYDLRKSKRGFPSHGRKKIKYEFTESVYDSGEHSLETDSCADTNRTIKIHSKSPMVKKANGAKKKSKGHECPICFRVFKSGQALGGHKRSHFIGNQEHRTLVIQHQVAHEMHTLIDLNLPAPIDE", "length": 455, "header": "tr|Q9FZE5-1|Q9FZE5_ARATH Isoform 1 of C2H2-like zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FZE5-1" }, "locus": { "chromosome": "1", "start_pos": 9193327, "end_pos": 9195382, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26610.1", "url": "https://www.ensemblgenomes.org/id/AT1G26610.1" }, { "database": "Ensembl Peptide", "id": "AT1G26610.1", "url": "https://www.ensemblgenomes.org/id/AT1G26610.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 57, "end_pos": 57, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FZE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZE5" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser57" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FZE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FZE5" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G26610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "Q9FZE5", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9FZE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZE5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 36, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 57 ], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 374, "end_pos": 376 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9FZE6-1", "uniprot_ac": "Q9FZE6", "uniprot_id": "Q9FZE6_ARATH", "mass": { "chemical_mass": 96505.0, "monoisotopic_mass": 96505.0 }, "refseq": {}, "gene_names": [ { "name": "T1K7.1", "type": "synonym", "evidence": [ { "id": "Q9FZE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6" } ] }, { "name": "T1K7_1", "type": "synonym", "evidence": [ { "id": "Q9FZE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6" } ] } ], "protein_names": [ { "name": "T-box transcription factor, putative (DUF863)", "type": "synonym", "evidence": [ { "id": "Q9FZE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZE6", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6", "locus": {} } ], "crossref": [ { "id": "AT1G26620", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G26620", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839202", "url": "https://www.ncbi.nlm.nih.gov/gene/839202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G26620", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26620", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSCANED", "url": "https://omabrowser.org/oma/group/NSCANED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33167:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33167:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27565", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27565", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G26620", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26620", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9FZE6", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FZE6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDAADSSSYSGYEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKNLNEVMNVSDHHTSENESKRKLHGFLLPNSTCGEGSSTQASNGRLQNGGSSNGDASEGRDVKGRRRMIDLQLPADEYLDTDETTNTGENTSFPPYNQLKSGRGDASHRSYPSGSCLDVKNSNGLADLNEPLKGQDSEPAALSRDMYSHYGRNNAHVQGQWLEKNRTQNGWMVLEAGQDRSTQRDQVHLPSHSGQVLSNNAFQPQSYPTTDHSKVKFSGERAHRELEVRSKTPQVSYDSYVESSVASTAPRSVNDYRPEFFKPLTHWSSSGRTMTSSNQKSYPVQTNPYMNFDTHARPDLSFENRSHVSNGLYQGFSSGSKQSFYNFPSTGFKPNASIGEVANSHSFVNLQGPKRQECSAGLPWLKPQPPYRSGMSNGFFDLNASTNQFMDGTDAGDDLTCASVLKGLRSASYSNNANMGRVETNNSQSSTKIIGSPIFGKQFVCKQERTPLIPHSLWIANQHKEVNHLVKRDLDINLPCDASVSVDQHGAKAYYVDKKEGKKAANFRHYIDLNSCANEDDEDSGFLSSLSVKTKARTWIDLEAPPTLESEEEGDNSQDKTNEETWRMMQGQDGNSMNELIKVAAEAIVAISMAGHQRHPDDAASSSTDAASKSPLSWFAEIITSCGDELERKIDGSPEATDFEGNREDYSSGEIDYFEAMTLNIQETKEEDYMPEPLVPENLKFEDTCINKPRRGQARRGRPKRDFQRDTLPGLSSLSRHEVTEDIQMFGGLMKTGDYTWSSGLAVRRNSKRKRNVTNINQAPLCPSMAQPMNESVSVGGLEDSKLSGWGQATRRPRRQRCPPAGSNPPTVILT", "length": 867, "header": "tr|Q9FZE6-1|Q9FZE6_ARATH Isoform 1 of T-box transcription factor, putative (DUF863) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9FZE6-1" }, "isoforms": [ { "isoform_ac": "Q9FZE6-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZE6/entry#Q9FZE6-1", "sequence": { "sequence": 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"MVVESSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLYAVGNGSRFIDIYDPKTQTWEELNSEQSVSVYSYTVVRNKVYFMDRNMPGRLGVFDPEENSWSSVFVPPREGGFWVRLGVWNNKVLLFSRVCGHETLMYDLDKEKGSKWRVCDQIKPSASQLASVLINF", "length": 346, "header": "sp|Q9FZJ3-1|FBK16_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FZJ3-1" }, "isoforms": [ { "isoform_ac": "Q9FZJ3-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3/entry#Q9FZJ3-1", "sequence": { "sequence": "MVVESSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLYAVGNGSRFIDIYDPKTQTWEELNSEQSVSVYSYTVVRNKVYFMDRNMPGRLGVFDPEENSWSSVFVPPREGGFWVRLGVWNNKVLLFSRVCGHETLMYDLDKEKGSKWRVCDQIKPSASQLASVLINF", "length": 346, "header": "sp|Q9FZJ3-1|FBK16_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9FZJ3-1" }, "locus": { "chromosome": "1", "start_pos": 9519067, "end_pos": 9520716, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G27420.1", "url": "https://www.ensemblgenomes.org/id/AT1G27420.1" }, { "database": "Ensembl Peptide", "id": "AT1G27420.1", "url": "https://www.ensemblgenomes.org/id/AT1G27420.1" } ] } }, { "isoform_ac": "Q9FZJ4-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3/entry#Q9FZJ4-1", "sequence": { "sequence": "MESGLISVDRWRNGSQAYFLTHIHSDHTRGLSGGWSQGPLYCSRTTASLFPSRFPGFDLSLLRVVPLFSWTSLSLRSPSSGSTVRLHLMAIDAHHCPGSIMFLFRGDFGCFLYTGDFRWDSDASDEARTTLVAAIDEFPVDILYLDNTYCNPIYSFPSRLVAVQLVADIIASHPSHDIIIAVDSLGKEDLLVHVSRILNIKIWVWPERLRTMHLLGFQDIFTTDTSLTRVRAVPRYSFSIQTLEGLNTMCPTIGIMPSGLPWVKRPFKGDDKLSGSFLTASMKNETVSAKKELEAAAVHKFHDYMYSVHYSDHSCYEEIGEFIKLVKPKSMKGIVVSSSSYVDPLYYFGRICGANQPPQVLLMRPDIAEEFRAVRIKSYSASDKTRMLAKEKRWKRDSHSSLKRNKKRARIQVKCAKILEVD", "length": 422, "header": "tr|Q9FZJ4-1|Q9FZJ4_ARATH Computationally mapped isoform of Protein artemis OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=Q9FZJ3-1" }, "locus": { "chromosome": "1", "start_pos": 9517201, "end_pos": 9519025, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G27410.1", "url": "https://www.ensemblgenomes.org/id/AT1G27410.1" }, { "database": "Ensembl Peptide", "id": "AT1G27410.1", "url": "https://www.ensemblgenomes.org/id/AT1G27410.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G27410", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G27410", "resource": "KEGG Pathway" }, { "id": "ath:AT1G27420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G27420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "pmid": "" }, { "name": "exonuclease activity", "id": "GO:0004527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004527", "evidence": [ { "database": "UniProtKB", "id": "Q9FZJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FZJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9FZJ3-F1", "pdb_chain": 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"monoisotopic_mass": 27104.0 }, "refseq": {}, "gene_names": [ { "name": "F17L21.5", "type": "synonym", "evidence": [ { "id": "Q9FZK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9" } ] }, { "name": "F17L21_5", "type": "synonym", "evidence": [ { "id": "Q9FZK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9" } ] } ], "protein_names": [ { "name": "Paired amphipathic helix (PAH2) superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9FZK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZK9", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9", "locus": {} } ], "crossref": [ { "id": "839615", "url": "https://www.ncbi.nlm.nih.gov/gene/839615", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039774", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039774", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G27270", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G27270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HANLCHG", "url": "https://omabrowser.org/oma/group/HANLCHG/", "database": "OMA", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/Q9FZK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGKSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQELLRDHANLCHGSNVLLPFRLQTAIPPEASAEFHINKVVGRSVPPAVAVPTMDDATSYLNAVKEAFHDEPAKYMEITKLLTDLKARRINAASVIARMEELLKDHLNLLLGFCVFLSPTRRFITKLKARFLGDGSQVVDSVLQILRMHSEGNKSKDEASQEVRALIQGHEDLLMELSEIFSDP", "length": 241, "header": "tr|Q9FZK9-1|Q9FZK9_ARATH Isoform 1 of Paired amphipathic helix (PAH2) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FZK9-1" }, "isoforms": [ { "isoform_ac": "Q9FZK9-1", "url": "https://www.uniprot.org/uniprotkb/Q9FZK9/entry#Q9FZK9-1", "sequence": { "sequence": "MVGKSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQELLRDHANLCHGSNVLLPFRLQTAIPPEASAEFHINKVVGRSVPPAVAVPTMDDATSYLNAVKEAFHDEPAKYMEITKLLTDLKARRINAASVIARMEELLKDHLNLLLGFCVFLSPTRRFITKLKARFLGDGSQVVDSVLQILRMHSEGNKSKDEASQEVRALIQGHEDLLMELSEIFSDP", "length": 241, "header": "tr|Q9FZK9-1|Q9FZK9_ARATH Isoform 1 of Paired amphipathic helix (PAH2) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9FZK9-1" }, "locus": { "chromosome": "1", "start_pos": 9472077, "end_pos": 9473149, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G27270.1", "url": "https://www.ensemblgenomes.org/id/AT1G27270.1" }, { "database": "Ensembl Peptide", "id": "AT1G27270.1", "url": "https://www.ensemblgenomes.org/id/AT1G27270.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LDF8", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LDF8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQYGSTGQHCEFTAASYFSWPTSSRLSNAAEERANYFSNLQKEEDDDDEVSPEPVSTEPKGQRATTLLELMTIRAFHSKMLRCYSLGTAIGFRIRRGVLTDIPAIIVFVSRKVHKQWLSPLQCLPTALEGAGGIWCDVDVVEFSYFGEPDHQPTPKQTFTTDIVDHLQGSDPFIGSGSQVASQETCGTLGAIVRSQTGGRQVGFVTNRHVAVNLDYPSQKMFHPLPPALGPGVYLGAVERATSFITDDLWFGIFAGTNPETFVRADGAFIPFADDYDLSRVTTSVKGGVGEIGEVKAIELQSPVGSLVGKQVVKVGRSSGLTTGTVLAYALEYNDERGVCFLTDFLVVGENHRSPFDLEGDSGSLIVMKGEEKARPIGIIWGGTGSRGRLKLKVGECPESWTTGVDLGRLLTHLQLDLITTDEGLKAAVQEQRAASTTGMSSMVADSSPPYVNLKKEKRSPEEKLEASLGPLQVQHIDLEERIETKGGAPSVEHQFMPTFSGQCSASAWPETAREDLVAGFTNGSCDGDLCVGLRLGDDGAKRRRTQVTNERMRPAE", "length": 558, "header": "tr|Q9LDF8-1|Q9LDF8_ARATH Isoform 1 of Trypsin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LDF8-1" }, "isoforms": [ { "isoform_ac": "Q9LDF8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8/entry#Q9LDF8-1", "sequence": { "sequence": "MPQYGSTGQHCEFTAASYFSWPTSSRLSNAAEERANYFSNLQKEEDDDDEVSPEPVSTEPKGQRATTLLELMTIRAFHSKMLRCYSLGTAIGFRIRRGVLTDIPAIIVFVSRKVHKQWLSPLQCLPTALEGAGGIWCDVDVVEFSYFGEPDHQPTPKQTFTTDIVDHLQGSDPFIGSGSQVASQETCGTLGAIVRSQTGGRQVGFVTNRHVAVNLDYPSQKMFHPLPPALGPGVYLGAVERATSFITDDLWFGIFAGTNPETFVRADGAFIPFADDYDLSRVTTSVKGGVGEIGEVKAIELQSPVGSLVGKQVVKVGRSSGLTTGTVLAYALEYNDERGVCFLTDFLVVGENHRSPFDLEGDSGSLIVMKGEEKARPIGIIWGGTGSRGRLKLKVGECPESWTTGVDLGRLLTHLQLDLITTDEGLKAAVQEQRAASTTGMSSMVADSSPPYVNLKKEKRSPEEKLEASLGPLQVQHIDLEERIETKGGAPSVEHQFMPTFSGQCSASAWPETAREDLVAGFTNGSCDGDLCVGLRLGDDGAKRRRTQVTNERMRPAE", "length": 558, "header": "tr|Q9LDF8-1|Q9LDF8_ARATH Isoform 1 of Trypsin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LDF8-1" }, "locus": { "chromosome": "3", "start_pos": 4132491, "end_pos": 4135264, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12950.1", "url": "https://www.ensemblgenomes.org/id/AT3G12950.1" }, { "database": "Ensembl Peptide", "id": "AT3G12950.1", "url": "https://www.ensemblgenomes.org/id/AT3G12950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LDF8", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9LDF8", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LDF8", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12950", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12950", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 524, "end_pos": 526, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LDF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8" }, { "id": "PF25819", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25819" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nal1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 157, "end_pos": 424, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "Q9LDF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDF8" }, { "id": "PF25608", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25608" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nal1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 142, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 524, "end_pos": 526 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LDG7-1", "uniprot_ac": "Q9LDG7", "uniprot_id": "Q9LDG7_ARATH", "mass": { "chemical_mass": 97414.0, "monoisotopic_mass": 97414.0 }, "refseq": { "ac": "NP_566515", "name": "Transducin/WD40 repeat-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566515" }, "gene_names": [], "protein_names": [ { "name": "Transducin/WD40 repeat-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_566515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566515" }, { "id": "Q9LDG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDG7", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7", "locus": {} } ], "crossref": [ { "id": "820786", "url": "https://www.ncbi.nlm.nih.gov/gene/820786", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G15470", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15470", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSADHEH", "url": "https://omabrowser.org/oma/group/NSADHEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14221", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14221", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14221:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14221:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566515", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566515", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G15470", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G15470", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LDG7", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LDG7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYQNEEEEEGGDTNDCFYESLDRLASSSSCSCSASNSDYDSESSPRISSAASHDSEELYGGGRRRRYPFPVPRFPMGASKFDVWTSEPASVSERRSKLLNEMGLSRDPVLSRLKPVSDSSSSKDTGAAGFEISRSISCNQLARRDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNCSVGSVSADSLRLNGDSDCVLRESVVNEEVEVCTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVEDSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSERGGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAEKKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTANHPPTPVDQLGTVERLNSPRNGIISSATNGYFFDRMSATWPEEKLLFARNRSGNRLSTDMSSSNGNSGNVSASWGMVIVTAGLRGEIRTFQNFGLPIRI", "length": 883, "header": "tr|Q9LDG7-1|Q9LDG7_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LDG7-1" }, "isoforms": [ { "isoform_ac": "Q9LDG7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDG7/entry#Q9LDG7-1", "sequence": { "sequence": 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OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LDG7-1" }, "locus": { "chromosome": "3", "start_pos": 5216262, "end_pos": 5220274, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15470.1", "url": "https://www.ensemblgenomes.org/id/AT3G15470.1" }, { "database": "Ensembl Peptide", "id": "AT3G15470.1", "url": "https://www.ensemblgenomes.org/id/AT3G15470.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 138, "end_pos": 138, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LDG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LDG7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser138" }, { "start_pos": 166, "end_pos": 166, "kinase_uniprot_canonical_ac": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31293:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31293:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LDJ9", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LDJ9", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT3G03040", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G03040", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LDJ9", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LDJ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLLSSLPDEVRCLILSFLTTKESASTSVLSKKWRNLFALVPNLDFDDSEFLHPEEGKRERDGILQSFMDFVDRVLSLQGNSSIRKFSLKCETGVPPARVNRWLCEVLQRDVSDIDLTIDLGYGYYLPEELFVSETLVNLKLKSAFNIDWWPGAEGTSLPMLKSLCVYGVRVFCDDELQELLPCFPVLEELQMSNMQWLDSDETVSSATLTTLHITGIRSENPKSISFDTPNLLSFVYTDFVAEDYPLVNMKNLSLARLALRANDDQIKRVRGPSNDLLEYDVVRHFGNVVKLMNGIQNVQELHLCPDTLELLSVCCESMPVFNNVKKLLIYSDEDRGWQAVPVLLRNCPRLETLIFEGIVHHVTDKCGDACDCIFRKDKGRSLKSCPVKVVEINGFGVTMKEKYLIEHFLDYFSCLKEMKIYINCEEDGVTQQVMKNREVSKLVLDEMEEYNEFYSCNVKLFLCKKKSIPQ", "length": 472, "header": "sp|Q9LDJ9-1|FB133_ARATH Isoform 1 of F-box protein At3g03040 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LDJ9-1" }, "isoforms": [ { "isoform_ac": "Q9LDJ9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9/entry#Q9LDJ9-1", "sequence": { "sequence": "MDLLSSLPDEVRCLILSFLTTKESASTSVLSKKWRNLFALVPNLDFDDSEFLHPEEGKRERDGILQSFMDFVDRVLSLQGNSSIRKFSLKCETGVPPARVNRWLCEVLQRDVSDIDLTIDLGYGYYLPEELFVSETLVNLKLKSAFNIDWWPGAEGTSLPMLKSLCVYGVRVFCDDELQELLPCFPVLEELQMSNMQWLDSDETVSSATLTTLHITGIRSENPKSISFDTPNLLSFVYTDFVAEDYPLVNMKNLSLARLALRANDDQIKRVRGPSNDLLEYDVVRHFGNVVKLMNGIQNVQELHLCPDTLELLSVCCESMPVFNNVKKLLIYSDEDRGWQAVPVLLRNCPRLETLIFEGIVHHVTDKCGDACDCIFRKDKGRSLKSCPVKVVEINGFGVTMKEKYLIEHFLDYFSCLKEMKIYINCEEDGVTQQVMKNREVSKLVLDEMEEYNEFYSCNVKLFLCKKKSIPQ", "length": 472, "header": "sp|Q9LDJ9-1|FB133_ARATH Isoform 1 of F-box protein At3g03040 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LDJ9-1" }, "locus": { "chromosome": "3", "start_pos": 684389, "end_pos": 686639, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03040.1", "url": "https://www.ensemblgenomes.org/id/AT3G03040.1" }, { "database": "Ensembl Peptide", "id": "AT3G03040.1", "url": "https://www.ensemblgenomes.org/id/AT3G03040.1" } ] } } ], "glycosylation": [], 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Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LDJ9", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LDJ9", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G03040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LDJ9", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9" } ], "pmid": "" } ] }, { "name": 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"Q9LDJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDJ9" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 49, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 253, "end_pos": 255 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LDK4-1", "uniprot_ac": "Q9LDK4", "uniprot_id": "Q9LDK4_ARATH", "mass": { "chemical_mass": 68173.0, "monoisotopic_mass": 68173.0 }, "refseq": { "ac": "NP_187908", "name": "hAT transposon superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187908" }, "gene_names": [ { "name": "MGH6.14", "type": "recommended", "evidence": [ { "id": "Q9LDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4" } ] }, { "name": "MGH6.14", "type": "synonym", "evidence": [ { "id": "NP_187908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187908" } ] } ], "protein_names": [ { "name": "HAT transposon superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4/entry#names_and_taxonomy" } ] }, { "name": "hAT transposon superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_187908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187908" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDK4", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MGH6.14", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4", "locus": {} } ], "crossref": [ { "id": "820488", "url": "https://www.ncbi.nlm.nih.gov/gene/820488", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G13020", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13020", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGFIYET", "url": "https://omabrowser.org/oma/group/MGFIYET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32166:SF63", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32166:SF63", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187908", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187908", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13020", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13020", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LDK4", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LDK4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGTVVDVREHGICVDKKKSRVKCNYCGKEMNSFHRLKHHLGAVGTDVTHCDQVSLTLRETFRTMLMEDKSGYTTPKTKRVGKFQMADSRKRRKTEDSSSKSVSPEQGNVAVEVDNQDLLSSKAQKCIGRFFYEHCVDLSAVDSPCFKEMMMALGVGQKIPDSHDLNGRLLQEAMKEVQDYVKNIKDSWKITGCSILLDAWIDPKGHDLVSFVADCPAGPVYLKSIDVSVVKNDVTALLSLVNGLVEEVGVHNVTQIIACSTSGWVGELGKLFSGHDREVFWSVSLSHCFELMLVKIGKMRSFGDILDKVNTIWEFINNNPSALKIYRDQSHGKDITVSSSEFEFVKPYLILKSVFKAKKNLAAMFASSVWKKEEGKSVSNLVNDSSFWEAVEEILKCTSPLTDGLRLFSNADNNQHVGYIYDTLDGIKLSIKKEFNDEKKHYLTLWDVIDDVWNKHLHNPLHAAGYYLNPTSFYSTDFHLDPEVSSGLTHSLVHVAKEGQIKIASQLDRYRLGKDCFNEASQPDQISGISPIDWWTEKASQHPELQSFAIKILSQTCEGASRYKLKRSLAEKLLLTEGMSHCERKHLEELAFVHYNLHLQSCKA", "length": 605, "header": "tr|Q9LDK4-1|Q9LDK4_ARATH Isoform 1 of HAT transposon superfamily protein OS=Arabidopsis thaliana OX=3702 GN=MGH6.14 PE=1 SV=1 CANONICAL=Q9LDK4-1" }, "isoforms": [ { "isoform_ac": "Q9LDK4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDK4/entry#Q9LDK4-1", "sequence": { "sequence": 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{ "database": "Ensembl Peptide", "id": "AT3G13020.1", "url": "https://www.ensemblgenomes.org/id/AT3G13020.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G11550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G11550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LDV7", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LDV7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEYEEYEEVSLPLIHEHLMMPCNYLTRADCCGRFGFTSGGYYCESCSFLVHRKCVEDSSEYIEHPSHSVHPLKLQSKPDHICDICDKRIVDLCYHCEICDFNVDLYCAKYPPPKVIDISETHHHKLTLLKKGIKFDCGASKCGEVMYGFPYKCHECDLAFHVDCVWNPPEAKNPSEVNHSHHPLHPLKLHIGQPPDYSDGKCRLCAQKICDRLFYHCSACNFSLDMCCLLNPPSQYVMDLKVHAHELTFRPRLDSFTCNACGLSGDRNPYICVQCDFMIHQECLDLPRLININRHDHRVSRTSVLGVVNSVCGVCRRKVDWTWGGYSCQRCPHYVVHSKCATREDVWNGKELEGVPEEIEDVEPYVVIDENTIQHFSHKEHYLRFHVSALLWEENKRCNACTQPIGLQSFYGCVVCDFILHQNCAESPRKKWHFLHNERLTLVTSKDDYFHCTACDRLSNGFMYQCGDMKLDVLCGSISEPFVHPSHPHHPLYYIPPEEEKQCNGCDNWSSLVLTCIESGCRYFLCFDCARLPQVVKHRVDAHPLSLCYGEKASGKYWCDICEKETNPSTWFYTCKDHRASLHTKCVMGDFARLMPGSTLTYSHISYEVVRNNSMSRPFCRACESHCMYPIILKVLGSSALYICSLNCVDGFWYPKIVSGIKKRQPAK", "length": 668, "header": "tr|Q9LDV7-1|Q9LDV7_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LDV7-1" }, "isoforms": [ { "isoform_ac": "Q9LDV7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7/entry#Q9LDV7-1", "sequence": { "sequence": "MEYEEYEEVSLPLIHEHLMMPCNYLTRADCCGRFGFTSGGYYCESCSFLVHRKCVEDSSEYIEHPSHSVHPLKLQSKPDHICDICDKRIVDLCYHCEICDFNVDLYCAKYPPPKVIDISETHHHKLTLLKKGIKFDCGASKCGEVMYGFPYKCHECDLAFHVDCVWNPPEAKNPSEVNHSHHPLHPLKLHIGQPPDYSDGKCRLCAQKICDRLFYHCSACNFSLDMCCLLNPPSQYVMDLKVHAHELTFRPRLDSFTCNACGLSGDRNPYICVQCDFMIHQECLDLPRLININRHDHRVSRTSVLGVVNSVCGVCRRKVDWTWGGYSCQRCPHYVVHSKCATREDVWNGKELEGVPEEIEDVEPYVVIDENTIQHFSHKEHYLRFHVSALLWEENKRCNACTQPIGLQSFYGCVVCDFILHQNCAESPRKKWHFLHNERLTLVTSKDDYFHCTACDRLSNGFMYQCGDMKLDVLCGSISEPFVHPSHPHHPLYYIPPEEEKQCNGCDNWSSLVLTCIESGCRYFLCFDCARLPQVVKHRVDAHPLSLCYGEKASGKYWCDICEKETNPSTWFYTCKDHRASLHTKCVMGDFARLMPGSTLTYSHISYEVVRNNSMSRPFCRACESHCMYPIILKVLGSSALYICSLNCVDGFWYPKIVSGIKKRQPAK", "length": 668, "header": "tr|Q9LDV7-1|Q9LDV7_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LDV7-1" }, "locus": { "chromosome": "4", "start_pos": 6996747, "end_pos": 6999693, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G11550.1", "url": "https://www.ensemblgenomes.org/id/AT4G11550.1" }, { "database": "Ensembl Peptide", "id": "AT4G11550.1", "url": "https://www.ensemblgenomes.org/id/AT4G11550.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q9LDV7", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LDV7", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G11550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G11550", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 612, "end_pos": 614, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7" }, { "id": "PF03107", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DC1", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 108, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "Q9LDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDV7" }, { "id": "PF22926", "database": 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"https://www.uniprot.org/uniprotkb/Q9LE10", "locus": {} } ], "crossref": [ { "id": "820783", "url": "https://www.ncbi.nlm.nih.gov/gene/820783", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LE10", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LE10*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT3G15440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FAEEIEC", "url": "https://omabrowser.org/oma/group/FAEEIEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LE10", "url": "https://www.orthodb.org/?gene=Q9LE10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_188163", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188163", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G15440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G15440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LE10", "url": "https://www.uniprot.org/uniprotkb/Q9LE10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LE10-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MECIVDDVSDSTCMVTPIYYSKETTQDRQTFLFDFEVVYTKVPEPNSDGESDYMSSKVKTRTTNQLQRYGRDEFIGQDEEQIKATIYEILNDVGVPPYLGIMKTFAEEIQSILNSPLEKLEKIKVKIEVVAHMFPEDDEIDVE", "length": 143, "header": "tr|Q9LE10-1|Q9LE10_ARATH Isoform 1 of RING/U-box protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE10-1" }, "isoforms": [ { "isoform_ac": "Q9LE10-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE10/entry#Q9LE10-1", "sequence": { "sequence": "MECIVDDVSDSTCMVTPIYYSKETTQDRQTFLFDFEVVYTKVPEPNSDGESDYMSSKVKTRTTNQLQRYGRDEFIGQDEEQIKATIYEILNDVGVPPYLGIMKTFAEEIQSILNSPLEKLEKIKVKIEVVAHMFPEDDEIDVE", "length": 143, "header": "tr|Q9LE10-1|Q9LE10_ARATH Isoform 1 of RING/U-box protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE10-1" }, "locus": { "chromosome": "3", "start_pos": 5211795, "end_pos": 5212506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15440.1", "url": "https://www.ensemblgenomes.org/id/AT3G15440.1" }, { "database": "Ensembl Peptide", "id": "AT3G15440.1", "url": "https://www.ensemblgenomes.org/id/AT3G15440.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 47, "end_pos": 47, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LE10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE10" }, { "database": "PubMed", "id": "23660473", "url": 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M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LE10", "url": "https://www.uniprot.org/uniprotkb/Q9LE10" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LE10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE10" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LE10", "url": "https://www.uniprot.org/uniprotkb/Q9LE10" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LE10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE10" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], 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"database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LE31", "url": "https://www.uniprot.org/uniprotkb/Q9LE31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LE31-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKYKATQQRGCDMAKEKRRMRRGLVAKKKKKPETKARRDGEMGSSSPERKNIERGRYDSQHNYKNIAKLSPKELLRDGFFTATFGGRKLIRSGRNLDGSLKSYYGVLRAAETSVLHHHVAKVTEELYVFRWKEELYDYHIMTKPFQLYDNQKFIDISTTFCGQLYPCENKDVLERETEAIALIAIEDNFCYTRDKFYIGTRSESVDDKLVTIKRQGDIEEGFTSEIFGDTRGASLNCSSARRWDEATPAVIKPTKPLKEGKREPEDDLETKVNLKKQKKNFENKETMEGYTSFLQMIEAKVDLLTSKVDSLTSKVDLLVSVKIASMGDPWVCSDALILVLPRTLFSIHPIRRSVCPTRSVRRSACPIRPVRRSVCPIRLADPIRLTIGLADLIQRSVYQIRFVSKPNGLPSPSSTLHRTVGSGGGEWMLPEASHPVLAPFRKVTSVLCILSKGHICSLHPLGDATVRWYPLDLTPFGRDTSSPVSYHSRPARVSADRTTQLGQYLISSPSSVELSVSSPS", "length": 521, "header": "tr|Q9LE31-1|Q9LE31_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE31-1" }, "isoforms": [ { "isoform_ac": "Q9LE31-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE31/entry#Q9LE31-1", "sequence": { "sequence": "MEKYKATQQRGCDMAKEKRRMRRGLVAKKKKKPETKARRDGEMGSSSPERKNIERGRYDSQHNYKNIAKLSPKELLRDGFFTATFGGRKLIRSGRNLDGSLKSYYGVLRAAETSVLHHHVAKVTEELYVFRWKEELYDYHIMTKPFQLYDNQKFIDISTTFCGQLYPCENKDVLERETEAIALIAIEDNFCYTRDKFYIGTRSESVDDKLVTIKRQGDIEEGFTSEIFGDTRGASLNCSSARRWDEATPAVIKPTKPLKEGKREPEDDLETKVNLKKQKKNFENKETMEGYTSFLQMIEAKVDLLTSKVDSLTSKVDLLVSVKIASMGDPWVCSDALILVLPRTLFSIHPIRRSVCPTRSVRRSACPIRPVRRSVCPIRLADPIRLTIGLADLIQRSVYQIRFVSKPNGLPSPSSTLHRTVGSGGGEWMLPEASHPVLAPFRKVTSVLCILSKGHICSLHPLGDATVRWYPLDLTPFGRDTSSPVSYHSRPARVSADRTTQLGQYLISSPSSVELSVSSPS", "length": 521, "header": "tr|Q9LE31-1|Q9LE31_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE31-1" }, "locus": { "chromosome": "4", "start_pos": 5584739, "end_pos": 5591133, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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"MIVLGLDWAYSSQGPNQTKGPKQSIRSRGRFFKSPRRASYTEWYKYGIACLVKERGIQADTQRQRDAPQRSQAPHLVPSSSSNQLFLVNKLLSSSWTTSDQLVFVNKLINSSCTTSNQLVFILGSSSSQPILGHEAHLREPGSSTSNQLVLILDRPARNPSLDAKNTFRCQDHLKELSSSLYVKAVLGHQDRLSGHYPVLHQLSARSFSIHTR", "length": 213, "header": "tr|Q9LE68-1|Q9LE68_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE68-1" }, "isoforms": [ { "isoform_ac": "Q9LE68-1", "url": "https://www.uniprot.org/uniprotkb/Q9LE68/entry#Q9LE68-1", "sequence": { "sequence": "MIVLGLDWAYSSQGPNQTKGPKQSIRSRGRFFKSPRRASYTEWYKYGIACLVKERGIQADTQRQRDAPQRSQAPHLVPSSSSNQLFLVNKLLSSSWTTSDQLVFVNKLINSSCTTSNQLVFILGSSSSQPILGHEAHLREPGSSTSNQLVLILDRPARNPSLDAKNTFRCQDHLKELSSSLYVKAVLGHQDRLSGHYPVLHQLSARSFSIHTR", "length": 213, "header": "tr|Q9LE68-1|Q9LE68_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LE68-1" }, "locus": { "chromosome": "4", "start_pos": 5579034, "end_pos": 5579745, "strand": "+", "evidence": [ { "database": 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"url": "https://www.ensemblgenomes.org/id/AT1G14680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LE70", "url": "https://www.uniprot.org/uniprotkb/Q9LE70" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LE70", "url": "https://www.uniprot.org/uniprotkb/Q9LE70" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G14680", 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H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "Q9LE85", "url": "https://www.uniprot.org/uniprotkb/Q9LE85" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LE85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LE85" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": 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Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEQ9", "url": "https://www.uniprot.org/uniprotkb/Q9LEQ9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LEQ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEQ9" } ], "reference": [ { "type": "PubMed", "id": 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"https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LER3", "url": "https://www.uniprot.org/uniprotkb/Q9LER3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De 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"https://www.ncbi.nlm.nih.gov/gene/831323", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G14710", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHVCAKN", "url": "https://omabrowser.org/oma/group/IHVCAKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LER5", "url": "https://www.orthodb.org/?gene=Q9LER5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31051:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31051:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G14710", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G14710", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LER5", "url": "https://www.uniprot.org/uniprotkb/Q9LER5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LER5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LER5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESLDTNFPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVEPTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIENRLW", "length": 124, "header": "tr|Q9LER5-1|Q9LER5_ARATH Isoform 1 of Proteasome assembly chaperone-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LER5-1" }, "isoforms": [ { "isoform_ac": "Q9LER5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LER5/entry#Q9LER5-1", "sequence": { "sequence": "MESLDTNFPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVEPTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIENRLW", "length": 124, "header": "tr|Q9LER5-1|Q9LER5_ARATH Isoform 1 of Proteasome assembly chaperone-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LER5-1" }, "locus": { "chromosome": "5", "start_pos": 4746264, "end_pos": 4747934, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G14710.1", "url": "https://www.ensemblgenomes.org/id/AT5G14710.1" }, { "database": "Ensembl Peptide", "id": "AT5G14710.1", "url": "https://www.ensemblgenomes.org/id/AT5G14710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of 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Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LER5", "url": "https://www.uniprot.org/uniprotkb/Q9LER5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9LER5", "url": "https://www.uniprot.org/uniprotkb/Q9LER5" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LER5", "url": "https://www.uniprot.org/uniprotkb/Q9LER5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G14710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G14710", "resource": "KEGG Pathway" } ], "orthologs": 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"PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_191248", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191248", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G56890", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G56890", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LER9", "url": "https://www.uniprot.org/uniprotkb/Q9LER9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LER9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LER9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERGKIKDLVNSSGGERIETILMVLCIIAVKGLKGYASMGSEEFKFIESECLDDHIEDPSGLSLVNYMGKLAVTKCNYVDVGGRRSVELCLWVLEDVEKQEWVKYVYTLPENEVLGSCEFSVAGVTARGDIVLCMKYTCKPYYVFYFDPEKKTLQSVEIQGFGAKLEEVEHRGEVYAFVDYVEDLSLNDAKQFKSSISHIKSRCYCCETLCPDNVGDEV", "length": 219, "header": 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Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LER9", "url": "https://www.uniprot.org/uniprotkb/Q9LER9" } ], "reference": [ { "type": 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G56790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G56790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LES8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LES8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNKKQRYSRSIRDDRDERDRTKHHHERSHEGSKRKDRSEEENGAARTTNKSSRFEDVARFEKRPYTCSIASDTTSSQILEAVKRFQELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQPFKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLASELATQDFFL", "length": 206, "header": "tr|Q9LES8-1|Q9LES8_ARATH Isoform 1 of RNA splicing factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LES8-1" }, "isoforms": [ { "isoform_ac": "Q9LES8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LES8/entry#Q9LES8-1", "sequence": { "sequence": "MDNKKQRYSRSIRDDRDERDRTKHHHERSHEGSKRKDRSEEENGAARTTNKSSRFEDVARFEKRPYTCSIASDTTSSQILEAVKRFQELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQPFKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLASELATQDFFL", "length": 206, "header": "tr|Q9LES8-1|Q9LES8_ARATH Isoform 1 of RNA splicing factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LES8-1" }, "locus": { "chromosome": "3", "start_pos": 21033777, "end_pos": 21034455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56790.1", "url": "https://www.ensemblgenomes.org/id/AT3G56790.1" }, { "database": "Ensembl Peptide", "id": "AT3G56790.1", "url": "https://www.ensemblgenomes.org/id/AT3G56790.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G56790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G56790", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" } ], "pmid": "" }, { "name": "U4/U6 x U5 tri-snRNP complex", "id": "GO:0046540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046540", "evidence": [ { "database": "UniProtKB", "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "Q9LES8", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LES8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LES8" }, { "id": "PF08572", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08572" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pre-mRNA-splicing factor 3", "eco_id": "ECO_0000259", "start_pos": 123, "end_pos": 202, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LET2-1", "uniprot_ac": "Q9LET2", "uniprot_id": "Q9LET2_ARATH", "mass": { "chemical_mass": 46399.0, "monoisotopic_mass": 46399.0 }, "refseq": { "ac": "NP_191234", "name": "plant/protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191234" }, "gene_names": [], "protein_names": [ { "name": "Plant/protein", "type": "synonym", "evidence": [ { "id": "Q9LET2", "database": "UniProtKB", "url": 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"database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G56750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G56750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WEENSCS", "url": "https://omabrowser.org/oma/group/WEENSCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31469", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31469", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31469:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31469:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_191234", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191234", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G56750", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G56750", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LET2", "url": "https://www.uniprot.org/uniprotkb/Q9LET2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LET2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LET2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATMSKAQRTKPTSGSQRLVLFCIVVFSFLLLFSSVISTGKLGLPYQQTLIDYFVWSPRGKRQHSLSEKYLYWGNRIDCPGKNCETCAGLGHQESSLRCALEEAMFLNRTFVMPSGMCINPIHNKKGILNRSDNKTTEEGWLGSSCAMDSLYDIDLISEKIPVILDDSKTWHIVLSTSMKLGERGIAHVSGVTRHRLKESHYSNLLIINRTASPLAWFVECKDRSNRSAVMLPYSFLPNMAAAKLRNAAEKIKAQLGDYDAIHVRRGDKLKTRKDRFGVERIQFPHLDRDTRPEFILRRIEKRIPRGRTLFIGSNERKPGFFSPLAVRYKLAYSSNFSEILDPIIENNYQLFMMERLVMMGAKTYFKTFKEYETDLTLTDDPKKNKNWEIPVYTMDERREEAS", "length": 403, "header": "tr|Q9LET2-1|Q9LET2_ARATH Isoform 1 of Plant/protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LET2-1" }, "isoforms": [ { "isoform_ac": "Q9LET2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LET2/entry#Q9LET2-1", "sequence": { "sequence": "MATMSKAQRTKPTSGSQRLVLFCIVVFSFLLLFSSVISTGKLGLPYQQTLIDYFVWSPRGKRQHSLSEKYLYWGNRIDCPGKNCETCAGLGHQESSLRCALEEAMFLNRTFVMPSGMCINPIHNKKGILNRSDNKTTEEGWLGSSCAMDSLYDIDLISEKIPVILDDSKTWHIVLSTSMKLGERGIAHVSGVTRHRLKESHYSNLLIINRTASPLAWFVECKDRSNRSAVMLPYSFLPNMAAAKLRNAAEKIKAQLGDYDAIHVRRGDKLKTRKDRFGVERIQFPHLDRDTRPEFILRRIEKRIPRGRTLFIGSNERKPGFFSPLAVRYKLAYSSNFSEILDPIIENNYQLFMMERLVMMGAKTYFKTFKEYETDLTLTDDPKKNKNWEIPVYTMDERREEAS", "length": 403, "header": "tr|Q9LET2-1|Q9LET2_ARATH Isoform 1 of Plant/protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LET2-1" }, "locus": { "chromosome": "3", "start_pos": 21018089, "end_pos": 21020453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56750.1", "url": "https://www.ensemblgenomes.org/id/AT3G56750.1" }, { "database": "Ensembl Peptide", "id": "AT3G56750.1", "url": "https://www.ensemblgenomes.org/id/AT3G56750.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 364, "end_pos": 364, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LET2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LET2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr364" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, 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Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5#function" }, { "database": "UniProtKB", "id": "ARBA00058864", "url": "https://www.uniprot.org/uniprotkb/ARBA00058864#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5", "locus": {} } ], "crossref": [ { "id": "AT5G10950", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT5G10950", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd20404", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20404", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "830962", "url": "https://www.ncbi.nlm.nih.gov/gene/830962", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G10950", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKNGKMG", "url": "https://omabrowser.org/oma/group/EKNGKMG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12663:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12663:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT5G10950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G10950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LEU5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGSRKRSSAKNRLVSSSTRSSGKDKVSDARKYGEALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETLDLKKERWELIEEDDAESESDEISLQEESAGESSEGTPEPPKGKGKASLKGRTDEAMPKKKQKIDSSSKSKAKEVEKKASKPETEKNGKMGDIGGKIVAAASRMSERFRSKGNVDQKETSKASKKPKMSSKLTKRKHTDDQDEDEEAGDDIDTSSEEAKPKVLKSCNSNADEVAENSSDEDEPKVLKTNNSKADKDEDEEENETSDDEAEPKALKLSNSNSDNGENNSSDDEKEITISKITSKKIKSNTADEENGDNEDGEKAVDEMSDGEPLVSFLKKSPEGIDAKRKKMKGKKEEEEEEGEENAGKDTKAEEASS", "length": 395, "header": "tr|Q9LEU5-1|Q9LEU5_ARATH Isoform 1 of Tudor/PWWP/MBT superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LEU5-1" }, "isoforms": [ { "isoform_ac": "Q9LEU5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5/entry#Q9LEU5-1", "sequence": { "sequence": "MVGSRKRSSAKNRLVSSSTRSSGKDKVSDARKYGEALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETLDLKKERWELIEEDDAESESDEISLQEESAGESSEGTPEPPKGKGKASLKGRTDEAMPKKKQKIDSSSKSKAKEVEKKASKPETEKNGKMGDIGGKIVAAASRMSERFRSKGNVDQKETSKASKKPKMSSKLTKRKHTDDQDEDEEAGDDIDTSSEEAKPKVLKSCNSNADEVAENSSDEDEPKVLKTNNSKADKDEDEEENETSDDEAEPKALKLSNSNSDNGENNSSDDEKEITISKITSKKIKSNTADEENGDNEDGEKAVDEMSDGEPLVSFLKKSPEGIDAKRKKMKGKKEEEEEEGEENAGKDTKAEEASS", "length": 395, "header": "tr|Q9LEU5-1|Q9LEU5_ARATH Isoform 1 of Tudor/PWWP/MBT superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LEU5-1" }, "locus": { "chromosome": "5", "start_pos": 3459217, "end_pos": 3461824, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G10950.1", "url": "https://www.ensemblgenomes.org/id/AT5G10950.1" }, { "database": "Ensembl Peptide", "id": "AT5G10950.1", "url": "https://www.ensemblgenomes.org/id/AT5G10950.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 231, "end_pos": 231, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr231" }, { "start_pos": 232, "end_pos": 232, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser232" }, { "start_pos": 233, "end_pos": 233, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser233" }, { "start_pos": 255, "end_pos": 255, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser255" }, { "start_pos": 256, "end_pos": 256, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser256" }, { "start_pos": 282, "end_pos": 282, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr282" }, { "start_pos": 283, "end_pos": 283, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser283" }, { "start_pos": 297, "end_pos": 297, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser297" }, { "start_pos": 299, "end_pos": 299, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser299" }, { "start_pos": 306, "end_pos": 306, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser306" }, { "start_pos": 307, "end_pos": 307, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser307" }, { "start_pos": 316, "end_pos": 316, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "site_lbl": "Ser316" }, { "start_pos": 346, "end_pos": 346, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser346" }, { "start_pos": 358, "end_pos": 358, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser358" }, { "start_pos": 71, "end_pos": 71, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Tyr71" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5" }, { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU5", "url": "https://www.uniprot.org/uniprotkb/Q9LEU5" }, { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": 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& cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU5" } ], "reference": [ { "type": 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323, "end_pos": 323, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU9" } ], "site_lbl": "Ser323" }, { "start_pos": 325, "end_pos": 325, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEU9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEU9" } ], "site_lbl": "Tyr325" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU9", "url": "https://www.uniprot.org/uniprotkb/Q9LEU9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU9", "url": "https://www.uniprot.org/uniprotkb/Q9LEU9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G10910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10910", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N0I6-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "Mettl15", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRYSYFCKLYKELFYCWMESGAFNLGICPQAMHTTAAVHTEYESLEETALCGTGKVHRSAEEDSEAIAKLHIPVMVDEVVHCLTPQKGQVFLDMTFGSGGHTKAILQKEPDITIYALDRDPTAYAIAEKLSEVYPKQIQAMLGQFSEAEALLINAGVQPGTIDGVLLDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNGLDQQALASILRAYGEEKHAKKIASAIIQARSIYPILRTQQLASIVAGAFPPSAVYARKDLLQRSSHIATKTFQALRIFVNNELNELYTGLKTAQKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQRSQMDSNIENDRSERGSSVRAPLNWDLLHKKVLTPEDQDVQENPRGRSAKLRAAIKL", "length": 409 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AC58FZ98-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "mettl15", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTYDAATEWTESIESRMMKNLIYGGYMGWNKARNVSYIEHYDFYAIRYSRIYMPQYYSCFMAAPCRQTLGVWKHVATLRNPRMFRRCWRKSWHPGRLYTGSVPSSPDCEMPVQEEKPFHTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQLAEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGPLDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRTLQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLRPKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGGNSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVRQ", "length": 454 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0JN95-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "METTL15", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLRYPYFCRIHKNFLSCWLESGIYNLGVWPKKIHATAERYNEYEAQEETDQTGIQELHRSQDRDSGVMTKLHIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQLSELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRTQQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLRPGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKAPLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIKL", "length": 407 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A6NJ78-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "METTL15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRYPYFCRMYKECLSCWLESGIPNLGVWPNRIHTTAEKYREYEAREQTDQTQAQELHRSQDRDFETMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIKL", "length": 407 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F7F172-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "Mettl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRYPYFCRTYNRLFSYFVDSGAFNLDVCPHTIHTTAAMHTEYKASEGIALCDTQKVYRSEETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLRTAQKFLKPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDHEIEERRCVRAPLKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIKL", "length": 406 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54PT4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKLFNNNNNLIRFQQILKRNYSNKKVKNVEDINIDSSNDNNTLVQQYVNKEYESYKIHKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCKDCYVIAFDRDPKVFEMTKPLRSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFSFKKELEGPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKIEPIKNTSDLVKIVESSIPYPMALKTISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPNSPLLAISFHSIEDRIVKQYLNKYTTIEEPTFKFSPTYKSPIFPSKEELEWNPRSKSAILRTAIRTSNKPISSNYNII", "length": 367 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9DCL4-1", "protein_name": "12S rRNA N(4)-cytidine methyltransferase METTL15", "gene_name": "Mettl15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRYPYFYRTYNRLFSHFVDSGASNLDVCPHTIHTAVALHTESKAVEGTALCGPQKVYSSEEKELEAMAKLHIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRTQQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAPLKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIKL", "length": 406 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VGY5-1", "protein_name": "Probable methyltransferase-like protein 15 homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKRLLNPTRLRLDWLRRSSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVDARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILESLTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKTN", "length": 356 }, "evidence": [ { "id": "Q9LEU9", "url": "https://omabrowser.org/oma/group/Q9LEU9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rRNA base methylation", "id": "GO:0070475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070475", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU9", "url": "https://www.uniprot.org/uniprotkb/Q9LEU9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "rRNA (cytosine-N4-)-methyltransferase activity", "id": "GO:0071424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071424", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU9", "url": "https://www.uniprot.org/uniprotkb/Q9LEU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LEU9", "url": "https://www.uniprot.org/uniprotkb/Q9LEU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 323, 325 ], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LEV6-1", "uniprot_ac": "Q9LEV6", "uniprot_id": "Q9LEV6_ARATH", "mass": { "chemical_mass": 29210.0, "monoisotopic_mass": 29210.0 }, "refseq": {}, "gene_names": [ { "name": "T30N20.100", "type": "synonym", "evidence": [ { "id": "Q9LEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6" } ] }, { "name": "T30N20_100", "type": "synonym", "evidence": [ { "id": "Q9LEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6" } ] } ], "protein_names": [ { "name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LEV6", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6", "locus": {} } ], "crossref": [ { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "830950", "url": "https://www.ncbi.nlm.nih.gov/gene/830950", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G10830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFDAVQY", "url": "https://omabrowser.org/oma/group/EFDAVQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LEV6", "url": "https://www.orthodb.org/?gene=Q9LEV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44575", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44575", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44575:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44575:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G10830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G10830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LEV6", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LEV6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLFDKQADLYLDARPNYPSEWFSKLADLTDHHGLAWDAATGNGQAALAVAEHYESVVATDVSESQLKLATPHPKINYRHTPTSMTDDELVELIGGENSVDLITVAQGVHWFDLPRFYSVATRLLRKPGGIIAVWGYNDVIVSPEFDAVQYRLHATTLPFWKYPYIQHIFDSYEALPFPFENVGMGSEGEPLKLEMPKTTSFEGIIRMFKSWSAIVTAREKGVELLPESLVRELETAWGGSDLVRSVVYKAFMIAGKVRV", "length": 261, "header": "tr|Q9LEV6-1|Q9LEV6_ARATH Isoform 1 of 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"id": "AT5G10830.1", "url": "https://www.ensemblgenomes.org/id/AT5G10830.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 72, "end_pos": 72, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LEV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LEV6" } ], "site_lbl": "Thr72" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson 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Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEV6", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LEV6", "url": "https://www.uniprot.org/uniprotkb/Q9LEV6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G10830", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10830", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF08241" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase type 11", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 134, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 72 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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{ "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LEW4", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MAJ23.2", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4", "locus": {} } ], "crossref": [ { "id": "830942", "url": "https://www.ncbi.nlm.nih.gov/gene/830942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G10750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIHEDDH", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LEW4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPSKQRHRSSTGENKSKPVRSASSSAIPEWITESTNGGSLRRVDPDTGTDGWASPPGDVFSLRSDSYLSKKQKTPAGDYLLSPAGMDWLKSSTKLENALARPDNRVAHALRKAQSRGQSLKSFIFAVNLQIPGKDHHSAVFYFATEEPIPSGSLLHRFINGDDAFRNQRFKIVNRIVKGPWVVKAAVGNYSACLLGKALTCNYHRGPNYFEIDVDISSSAIATAILRLALGYVTSVTIDMGFLAEAQTEEELPERLIGAVRVCQMEMSSAFVVDAPPPQQLPSQPCRTLSSAKVNHDEDED", "length": 302, "header": "tr|Q9LEW4-1|Q9LEW4_ARATH Isoform 1 of Enhanced disease resistance-like protein (DUF1336) OS=Arabidopsis thaliana OX=3702 GN=MAJ23.2 PE=1 SV=1 CANONICAL=Q9LEW4-1" }, "isoforms": [ { "isoform_ac": "Q9LEW4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4/entry#Q9LEW4-1", "sequence": { "sequence": "MSPSKQRHRSSTGENKSKPVRSASSSAIPEWITESTNGGSLRRVDPDTGTDGWASPPGDVFSLRSDSYLSKKQKTPAGDYLLSPAGMDWLKSSTKLENALARPDNRVAHALRKAQSRGQSLKSFIFAVNLQIPGKDHHSAVFYFATEEPIPSGSLLHRFINGDDAFRNQRFKIVNRIVKGPWVVKAAVGNYSACLLGKALTCNYHRGPNYFEIDVDISSSAIATAILRLALGYVTSVTIDMGFLAEAQTEEELPERLIGAVRVCQMEMSSAFVVDAPPPQQLPSQPCRTLSSAKVNHDEDED", "length": 302, "header": "tr|Q9LEW4-1|Q9LEW4_ARATH Isoform 1 of Enhanced disease resistance-like protein (DUF1336) OS=Arabidopsis thaliana OX=3702 GN=MAJ23.2 PE=1 SV=1 CANONICAL=Q9LEW4-1" }, "locus": { "chromosome": "5", "start_pos": 3398790, "end_pos": 3400281, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G10750.1", "url": "https://www.ensemblgenomes.org/id/AT5G10750.1" }, { "database": "Ensembl Peptide", "id": "AT5G10750.1", "url": "https://www.ensemblgenomes.org/id/AT5G10750.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEW4", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LEW4", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G10750", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G10750", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LEW4", "url": "https://www.uniprot.org/uniprotkb/Q9LEW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": 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Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LEX7", "url": "https://www.uniprot.org/uniprotkb/Q9LEX7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes 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"length": 293, "header": "sp|Q9LF38-1|EDL1_ARATH Isoform 1 of EID1-like F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EDL1 PE=2 SV=1 CANONICAL=Q9LF38-1" }, "isoforms": [ { "isoform_ac": "Q9LF38-1", "url": "https://www.uniprot.org/uniprotkb/Q9LF38/entry#Q9LF38-1", "sequence": { "sequence": "MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRTRFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLSDSEDAIPSEDNNHTEKKQDNGFPRENVLKRRNSLLGGSENGPPPQKRLTNPNQ", "length": 293, "header": "sp|Q9LF38-1|EDL1_ARATH Isoform 1 of EID1-like F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EDL1 PE=2 SV=1 CANONICAL=Q9LF38-1" }, "locus": { "chromosome": "5", "start_pos": 5012061, "end_pos": 5014281, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G15440.1", "url": "https://www.ensemblgenomes.org/id/AT5G15440.1" }, { "database": "Ensembl Peptide", "id": "AT5G15440.1", "url": "https://www.ensemblgenomes.org/id/AT5G15440.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 273, "end_pos": 273, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LF38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LF38" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser273" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, 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Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LF38", "url": "https://www.uniprot.org/uniprotkb/Q9LF38" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LF38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LF38" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LF38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LF38" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"MDPQAFIRLSVGSLALRIPKVLINSTSKSNEKKNFSSQCSCEIKLRGFPVQTTSIPLMPSLDAAPDHHSISTSFYLEESDLRALLTPGCFYSPHAHLEISVFTGKKSLNCGVGGKRQQIGMFKLEVGPEWGEGKPMILFNGWISIGKTKRDGAAELHLKVKLDPDPRYVFQFEDVTTLSPQIVQLRGSVKQPIFSCKFSRDRVSQVDPLNGYWSSSGDGTELESERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLVVRPDPSRPNSWQPWGKLEAWRERGIRDSVCCRFHLLSNGLEVGDVLMSEILISAEKGGEFLIDTDKQMLTVAATPIPSPQSSGDFSGLGQCVSGGGFVMSSRVQGEGKSSKPVVQLAMRHVTCVEDAAIFMALAAAVDLSILACKPFRRTSRRRFRHYSW", "length": 432, "header": "tr|Q9LF60-1|Q9LF60_ARATH Isoform 1 of Nuclear factor 1 A-type protein (DUF1005) OS=Arabidopsis thaliana OX=3702 GN=ASG1 PE=1 SV=1 CANONICAL=Q9LF60-1" }, "isoforms": [ { "isoform_ac": "Q9LF60-1", "url": "https://www.uniprot.org/uniprotkb/Q9LF60/entry#Q9LF60-1", "sequence": { "sequence": 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Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LF60", "url": "https://www.uniprot.org/uniprotkb/Q9LF60" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LF60", "url": "https://www.uniprot.org/uniprotkb/Q9LF60" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G17640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G17640", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "response to salt stress", "id": "GO:0009651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009651", "evidence": [ { "database": "UniProtKB", "id": "Q9LF60", "url": "https://www.uniprot.org/uniprotkb/Q9LF60" } ], "pmid": "" }, { "name": "response to abscisic acid", "id": "GO:0009737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009737", "evidence": [ { "database": "UniProtKB", "id": 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"MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKCELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSLKDNVQYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKHGNNCHNNLSDEEHVVSPGSLEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAKAILISYAEHVFSSSLTEHN", "length": 381, "header": "tr|Q9LF94-1|Q9LF94_ARATH Isoform 1 of Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LF94-1" }, "isoforms": [ { "isoform_ac": "Q9LF94-1", "url": "https://www.uniprot.org/uniprotkb/Q9LF94/entry#Q9LF94-1", "sequence": { "sequence": "MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKCELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSLKDNVQYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKHGNNCHNNLSDEEHVVSPGSLEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAKAILISYAEHVFSSSLTEHN", "length": 381, "header": "tr|Q9LF94-1|Q9LF94_ARATH Isoform 1 of Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LF94-1" }, "locus": { "chromosome": "3", "start_pos": 19645660, "end_pos": 19646962, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52980.1", "url": "https://www.ensemblgenomes.org/id/AT3G52980.1" }, { "database": "Ensembl Peptide", "id": "AT3G52980.1", "url": "https://www.ensemblgenomes.org/id/AT3G52980.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 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Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LF94", "url": "https://www.uniprot.org/uniprotkb/Q9LF94" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9LF94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LF94" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LF94", "url": "https://www.uniprot.org/uniprotkb/Q9LF94" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52980", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": 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} ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LF94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LF94" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 164, "end_pos": 192, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "Q9LF94", 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M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFB1", "url": "https://www.uniprot.org/uniprotkb/Q9LFB1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44042:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G01200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G01200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LFB6", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFB6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS", "length": 267, "header": "tr|Q9LFB6-1|Q9LFB6_ARATH Isoform 1 of Duplicated homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFB6-1" }, "isoforms": [ { "isoform_ac": "Q9LFB6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6/entry#Q9LFB6-1", "sequence": { "sequence": "MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS", "length": 267, "header": "tr|Q9LFB6-1|Q9LFB6_ARATH Isoform 1 of Duplicated homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFB6-1" }, "locus": { "chromosome": "5", "start_pos": 76872, "end_pos": 78543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01200.1", "url": "https://www.ensemblgenomes.org/id/AT5G01200.1" }, { "database": "Ensembl Peptide", "id": "AT5G01200.1", "url": "https://www.ensemblgenomes.org/id/AT5G01200.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 234, "start_aa": "Thr", "end_pos": 234, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr234", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", 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Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFB6", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFB6", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "Q9LFB6", "url": "https://www.uniprot.org/uniprotkb/Q9LFB6" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ 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Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LFC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFC1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan 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"PTHR33103:SF115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33103:SF115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05056", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05056", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G01120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G01120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LFC4", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDDFENSVINLKLLIDEEKNKVVFAEAGTDFVDILFSFSTLPMGTIVRLLEMHHKSRSIAIGCFNNIYASVVSMGMKHFSTQACKQMLLFPGSLNQDKCQNMKLKIDDSEATKCFMCPMFVRSGQCSKGYSNFKTSRCSCGNFMDEVIQFQGEGGRGNGSQAEVFVRGAHTSFIITDDLKVQVNSVGSTLNVLKDLAYADCDKLVEMILEVNLQEVATLLVCLFTSDTPLTDTFLKKKSSHGMNRIHKRPSPSLSEDREETKADQTIMLNAYVRKEEGNILYVECGDDFVDLLFSFLAMPLESVWDISGRGIILGCIGNLCKSFKDLSSASATEASAFKCVLPHYYKCQKQLLNDVVTTHQPPTYYRFVSFSADHFREYRLSENSGKRLVYDWDKLVPVTSIDPKTEGNNTAETSGFVKRGTKFMVTDDLIINPSNSTSTIGFLKEKQTRLDEVEIRVINMTKEEAIRLLGASMVTSSALSTGLLAMESASTSDPKCRFFKKPKIETET", "length": 510, "header": "tr|Q9LFC4-1|Q9LFC4_ARATH Isoform 1 of DUF674 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFC4-1" }, "isoforms": [ { "isoform_ac": "Q9LFC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4/entry#Q9LFC4-1", "sequence": { "sequence": "MSDDFENSVINLKLLIDEEKNKVVFAEAGTDFVDILFSFSTLPMGTIVRLLEMHHKSRSIAIGCFNNIYASVVSMGMKHFSTQACKQMLLFPGSLNQDKCQNMKLKIDDSEATKCFMCPMFVRSGQCSKGYSNFKTSRCSCGNFMDEVIQFQGEGGRGNGSQAEVFVRGAHTSFIITDDLKVQVNSVGSTLNVLKDLAYADCDKLVEMILEVNLQEVATLLVCLFTSDTPLTDTFLKKKSSHGMNRIHKRPSPSLSEDREETKADQTIMLNAYVRKEEGNILYVECGDDFVDLLFSFLAMPLESVWDISGRGIILGCIGNLCKSFKDLSSASATEASAFKCVLPHYYKCQKQLLNDVVTTHQPPTYYRFVSFSADHFREYRLSENSGKRLVYDWDKLVPVTSIDPKTEGNNTAETSGFVKRGTKFMVTDDLIINPSNSTSTIGFLKEKQTRLDEVEIRVINMTKEEAIRLLGASMVTSSALSTGLLAMESASTSDPKCRFFKKPKIETET", "length": 510, "header": "tr|Q9LFC4-1|Q9LFC4_ARATH Isoform 1 of DUF674 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFC4-1" }, "locus": { "chromosome": "5", "start_pos": 44810, "end_pos": 47206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01120.1", "url": "https://www.ensemblgenomes.org/id/AT5G01120.1" }, { "database": "Ensembl Peptide", "id": "AT5G01120.1", "url": "https://www.ensemblgenomes.org/id/AT5G01120.1" } ] } } ], 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plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC4", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC4", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC4", "url": "https://www.uniprot.org/uniprotkb/Q9LFC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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"evidence": [ { "id": "Q9LFC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFC7", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7", "locus": {} } ], "crossref": [ { "id": "cd06899", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06899", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "831840", "url": "https://www.ncbi.nlm.nih.gov/gene/831840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001220", "url": 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"MAVFKTLAFLFVLSIVIYQSVAVTDVNSSFSFNGFVKAPSFDNNVALFGDSKLVHGGPSIQLTDSVSRSEGRVIYKKPIRLFQGKERNFSGSFSTSFSFSMSDEIGSVLAFIMVPRGLDLRLFGRKGNNSSSGLGFLLKHKVVAVEFGISKRGNHVGILVGRPESGKVRKLSSFGHHFNEEKRLNCWIDYEASSKRIEVRLSLSAALKPVDPFVSYSVDLAKLWKDGKFMVGLTSANGNTSKPVYLHSWSFKLRHPSMRIHSQPLDPNDVSKTVKEGEKTVEVKGKGKCIWRILGALVLGAVCGTLGAMFALYLWTICGNRQSMAIVPEECADEKADILVTKADVVVEEEVKK", "length": 353, "header": "tr|Q9LFC7-1|Q9LFC7_ARATH Isoform 1 of Concanavalin A-like lectin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFC7-1" }, "isoforms": [ { "isoform_ac": "Q9LFC7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7/entry#Q9LFC7-1", "sequence": { "sequence": 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M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC7", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LFC7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFC7" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC7", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G01090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01090", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC7", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "Q9LFC7", "url": "https://www.uniprot.org/uniprotkb/Q9LFC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { 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"count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LFD3-1", "uniprot_ac": "Q9LFD3", "uniprot_id": "Q9LFD3_ARATH", "mass": { "chemical_mass": 82292.0, "monoisotopic_mass": 82292.0 }, "refseq": {}, "gene_names": [ { "name": "F7J8.10", "type": "synonym", "evidence": [ { "id": "Q9LFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3" } ] }, { "name": "F7J8_10", "type": "synonym", "evidence": [ { "id": "Q9LFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3" } ] } ], "protein_names": [ { "name": "Enolase, putative (DUF3527)", "type": "synonym", "evidence": [ { "id": "Q9LFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFD3", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3", "locus": {} } ], "crossref": [ { "id": "831730", "url": "https://www.ncbi.nlm.nih.gov/gene/831730", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G01030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G01030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NQCAFSN", "url": "https://omabrowser.org/oma/group/NQCAFSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31390:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31390:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT5G01030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G01030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LFD3", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFD3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"locus": { "chromosome": "5", "start_pos": 9780, "end_pos": 13235, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G01030.2", "url": "https://www.ensemblgenomes.org/id/AT5G01030.2" }, { "database": "Ensembl Peptide", "id": "AT5G01030.2", "url": "https://www.ensemblgenomes.org/id/AT5G01030.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 366, "end_pos": 366, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFD3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser366" }, { "start_pos": 564, "end_pos": 564, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFD3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser564" }, { "start_pos": 570, "end_pos": 570, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFD3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser570" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada 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"https://www.uniprot.org/uniprotkb/Q9LFF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSVCGGLDFKDAESSSASSPIICSTGVKHISCVGSDDAQESDGDDSGYIHQTVIEESKDKAISEPIPESLPLNSLDDESEDKNLATALQDMFSESMSVVTLIPAIKGGREKHGKSLEKLSVSWAEDVYDPPPSIVSHTRSKKQQPQKSKSKDNLKKNGKKGQKGSSNSRSSKDKKQISSRSSKYSRDKFDWTTQMSVLAASS", "length": 203, "header": "tr|Q9LFF4-1|Q9LFF4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFF4-1" }, "isoforms": [ { "isoform_ac": "Q9LFF4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFF4/entry#Q9LFF4-1", "sequence": { "sequence": "MSSVCGGLDFKDAESSSASSPIICSTGVKHISCVGSDDAQESDGDDSGYIHQTVIEESKDKAISEPIPESLPLNSLDDESEDKNLATALQDMFSESMSVVTLIPAIKGGREKHGKSLEKLSVSWAEDVYDPPPSIVSHTRSKKQQPQKSKSKDNLKKNGKKGQKGSSNSRSSKDKKQISSRSSKYSRDKFDWTTQMSVLAASS", "length": 203, "header": "tr|Q9LFF4-1|Q9LFF4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFF4-1" }, "locus": { "chromosome": "3", "start_pos": 19890364, "end_pos": 19892443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G53670.2", "url": "https://www.ensemblgenomes.org/id/AT3G53670.2" }, { "database": "Ensembl Peptide", "id": "AT3G53670.2", "url": "https://www.ensemblgenomes.org/id/AT3G53670.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 64, "end_pos": 64, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFF4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser64" }, { "start_pos": 70, "end_pos": 70, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFF4", "url": 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Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFF4", "url": "https://www.uniprot.org/uniprotkb/Q9LFF4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LFF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFF4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFF4", "url": "https://www.uniprot.org/uniprotkb/Q9LFF4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G53670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G53670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LFF4", "url": "https://www.uniprot.org/uniprotkb/Q9LFF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 64, 70, 80 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/Q9LFG3", "locus": {} } ], "crossref": [ { "id": "824524", "url": "https://www.ncbi.nlm.nih.gov/gene/824524", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "Q9LFG3", "url": "https://www.orthodb.org/?gene=Q9LFG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26312", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26312", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26312:SF142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26312:SF142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": 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"categories": [ "Protein", "Organism-specific" ] }, { "id": "824517", "url": "https://www.ncbi.nlm.nih.gov/gene/824517", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR057713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G53490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G53490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FNTHEWL", "url": "https://omabrowser.org/oma/group/FNTHEWL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33780", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33780", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33780:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33780:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25829", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25829", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190917", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190917", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G53490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G53490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LFG9", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFG9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIQIPSASWDFRGFLLCFIFFSSLPGTILTQEVTLDSVQIFTTHDWFSTKPTVFFQCKGENKTVLPDVKRTNVSYSFNGEESWQPLTELQGTKCKRCGIYEDDPLKYDTFDEWELCPSDFTAEGSYKRFKEKEFNATFLCHGCSQVGAGSNKESGTEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQQEQARFLKLFEDGDDIEDELGLENTL", "length": 225, "header": "tr|Q9LFG9-1|Q9LFG9_ARATH Isoform 1 of Valine-tRNA ligase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFG9-1" }, "isoforms": [ { "isoform_ac": "Q9LFG9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9/entry#Q9LFG9-1", "sequence": { "sequence": "MSIQIPSASWDFRGFLLCFIFFSSLPGTILTQEVTLDSVQIFTTHDWFSTKPTVFFQCKGENKTVLPDVKRTNVSYSFNGEESWQPLTELQGTKCKRCGIYEDDPLKYDTFDEWELCPSDFTAEGSYKRFKEKEFNATFLCHGCSQVGAGSNKESGTEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQQEQARFLKLFEDGDDIEDELGLENTL", "length": 225, "header": "tr|Q9LFG9-1|Q9LFG9_ARATH Isoform 1 of Valine-tRNA ligase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFG9-1" }, "locus": { "chromosome": "3", "start_pos": 19832448, "end_pos": 19834304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G53490.1", "url": "https://www.ensemblgenomes.org/id/AT3G53490.1" }, { "database": "Ensembl Peptide", "id": "AT3G53490.1", "url": "https://www.ensemblgenomes.org/id/AT3G53490.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFG9", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFG9", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G53490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G53490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "Q9LFG9", "url": "https://www.uniprot.org/uniprotkb/Q9LFG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 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"eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 142, "start_aa": "Gln", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G53440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G53440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MDQGLGF", "url": "https://omabrowser.org/oma/group/MDQGLGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14000", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14000", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14000:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14000:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": 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"MTRRKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRSKKLNISKDGFPSLRRSLRLSSRECPEVNKEKPKTASTSSSRTKSSTTVSSSCALRRSPRFSSGGGESVDQSSSSIGKKSGNSVLSSCSTKSISSEKVKGGDGLKSKDRSRSRVRPKTKKMFSGCDDNEEEEEEVSVCLTERKRMRIAKPNEEENAEAKADEVKRKGKEEEEEEDEEEGLKAKNKLEKGGWTEELELALQGAYLTVKPSPNFWKKVAKMVPGKSAQECFDRVNSALITPRQAQPRRATKTILSTIPQFSLSASKLLKPNSPKTKIRQRRNNLSKKVVRHLLEKQNHMDQGLGFDLFSVLEPNTTSNFLSTPMEKGRSLPKILESPVPCSSKDPTTLVSPPVLKQVKNKALHEKYIDHLHIRDAKRKAESTRLAGKENIRPIEIQKKDSVRAAKDALFFDVQDAIQKLKGLEAENSSSSSEFCYDHVETDEED", "length": 512, "header": "tr|Q9LFH4-1|Q9LFH4_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFH4-1" }, "isoforms": [ { "isoform_ac": "Q9LFH4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFH4/entry#Q9LFH4-1", "sequence": { "sequence": 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D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFU3", "url": "https://www.uniprot.org/uniprotkb/Q9LFU3" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", 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"Organism-specific" ] }, { "id": "Q9LFV9", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFV9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMRRRNKKTKTVISNPETLEERNKFDEIPHDLVIEILGRLPAKSVARFLTVSKLWATSIRSLDFIKSYPLGSSSKPRTLVASKQVVANPSTGRTIPLPRVKTRRTIATSFFGYDSVSDQYKVLCMTVKAYGDLRDESSQHQVFTLGAKKKSFRMIDTSIIPHRPCSNGVCIDSVVYYVAKTGAGMLHLCIMRFDLSSEILDLFTSLPQEIRPPS", "length": 214, "header": "sp|Q9LFV9-1|FB258_ARATH Isoform 1 of Putative F-box protein At5g15670 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFV9-1" }, "isoforms": [ { "isoform_ac": "Q9LFV9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9/entry#Q9LFV9-1", "sequence": { "sequence": "MMRRRNKKTKTVISNPETLEERNKFDEIPHDLVIEILGRLPAKSVARFLTVSKLWATSIRSLDFIKSYPLGSSSKPRTLVASKQVVANPSTGRTIPLPRVKTRRTIATSFFGYDSVSDQYKVLCMTVKAYGDLRDESSQHQVFTLGAKKKSFRMIDTSIIPHRPCSNGVCIDSVVYYVAKTGAGMLHLCIMRFDLSSEILDLFTSLPQEIRPPS", "length": 214, "header": "sp|Q9LFV9-1|FB258_ARATH Isoform 1 of Putative F-box protein At5g15670 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LFV9-1" }, "locus": { "chromosome": "5", "start_pos": 5099595, "end_pos": 5100407, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G15670.1", "url": "https://www.ensemblgenomes.org/id/AT5G15670.1" }, { "database": "Ensembl Peptide", "id": "AT5G15670.1", "url": "https://www.ensemblgenomes.org/id/AT5G15670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LFV9", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFV9", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G15670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G15670", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LFV9", "url": "https://www.uniprot.org/uniprotkb/Q9LFV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LFV9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 214, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"https://www.uniprot.org/uniprotkb/Q9LFX3" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat (TPR)-like superfamily protein", "type": "synonym", "evidence": [ { "id": "Q9LFX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFX3", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3", "locus": {} } ], "crossref": [ { "id": "AT1G27150", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G27150", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR16263:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16263:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G27150", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G27150", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LFX3", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LFX3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKTVRCVRWGYEVNTSSDACIDAINSYFQQVLSYGRKRKVILEAPLYDKDCVLGSILAAHFLSSSDPSRANSYVEAAASNLEQSTPYEKAVYEAVTYLISEDRDDDLAFEMHTKLLKRFPKDLASLKRAQLLSFYMGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHHCLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYDHHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHLDILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAVYEYARGNYEKALELLGSEFNAIGYKIVGASDEQIDVFNEMWCQLLLKTGQSSTAKEVIRERIKARDGIPFMWRLLEKSYSMEGNAEAESSARERAKKLESCYF", "length": 468, "header": "tr|Q9LFX3-1|Q9LFX3_ARATH Isoform 1 of Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LFX3-1" }, "isoforms": [ { "isoform_ac": "Q9LFX3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3/entry#Q9LFX3-1", "sequence": { "sequence": 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Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LFX3", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LFX3", "url": "https://www.uniprot.org/uniprotkb/Q9LFX3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G27150", "name": "", "url": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH41-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKKQGFFSALRHEVVRGLSPSRSRARSRSVSPARSSSPMSALTWGRKNLTGGGGGGGGGGYYLAQPEQLIGRSGSLRPVMEGPDPDEGGGGGNIGESKRLGSGLGHWVKGQLSRAPSVAATAAYRRNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQQYTAASGGQKLQNSIKNAYAMGKLKMITSELETATRTVRNRNPSKAETGGFVLWQMNPDMWYVELAVGGSKVRAGCNGKLVWRHTPWLGSHTAKGPVRPLRRGLQGLDPRTTAAMFAEAKCIGEKKVNGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGETVFWETTYNSSLDDYRQVEGIMIAHSGHSVVTLFRFGEVATSHTRTKMEESWTIEEVAFNVPGLSLDCFIPPADLKTGSLTESCEYPQEERGKNNTLALSAAHRAKVAALENGSLEDHRPVWHTDV", "length": 485, "header": "tr|Q9LH41-1|Q9LH41_ARATH Isoform 1 of Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) OS=Arabidopsis thaliana OX=3702 GN=BDR4 PE=1 SV=1 CANONICAL=Q9LH41-1" }, "isoforms": [ { "isoform_ac": "Q9LH41-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH41/entry#Q9LH41-1", "sequence": { "sequence": "MEKKQGFFSALRHEVVRGLSPSRSRARSRSVSPARSSSPMSALTWGRKNLTGGGGGGGGGGYYLAQPEQLIGRSGSLRPVMEGPDPDEGGGGGNIGESKRLGSGLGHWVKGQLSRAPSVAATAAYRRNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQQYTAASGGQKLQNSIKNAYAMGKLKMITSELETATRTVRNRNPSKAETGGFVLWQMNPDMWYVELAVGGSKVRAGCNGKLVWRHTPWLGSHTAKGPVRPLRRGLQGLDPRTTAAMFAEAKCIGEKKVNGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGETVFWETTYNSSLDDYRQVEGIMIAHSGHSVVTLFRFGEVATSHTRTKMEESWTIEEVAFNVPGLSLDCFIPPADLKTGSLTESCEYPQEERGKNNTLALSAAHRAKVAALENGSLEDHRPVWHTDV", "length": 485, "header": "tr|Q9LH41-1|Q9LH41_ARATH Isoform 1 of Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) OS=Arabidopsis thaliana OX=3702 GN=BDR4 PE=1 SV=1 CANONICAL=Q9LH41-1" }, "locus": { "chromosome": "3", "start_pos": 6780563, "end_pos": 6783166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19540.1", "url": "https://www.ensemblgenomes.org/id/AT3G19540.1" }, { "database": "Ensembl Peptide", "id": "AT3G19540.1", "url": "https://www.ensemblgenomes.org/id/AT3G19540.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 118, "end_pos": 118, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH41" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser118" }, { "start_pos": 74, "end_pos": 74, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH41" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser74" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis 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Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LH41", "url": "https://www.uniprot.org/uniprotkb/Q9LH41" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LH41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH41" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LH41", "url": "https://www.uniprot.org/uniprotkb/Q9LH41" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LH41", "url": "https://www.uniprot.org/uniprotkb/Q9LH41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"name": "mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189524" }, "gene_names": [], "protein_names": [ { "name": "Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "Q9LH92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH92/entry#names_and_taxonomy" } ] }, { "name": "mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "NP_189524", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189524" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH92", "url": "https://www.uniprot.org/uniprotkb/Q9LH92" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LH92", "locus": {} } ], "crossref": [ { "id": "822514", "url": "https://www.ncbi.nlm.nih.gov/gene/822514", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28820", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28820", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KKCPPRE", "url": "https://omabrowser.org/oma/group/KKCPPRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189524", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189524", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28820", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28820", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LH92", "url": "https://www.uniprot.org/uniprotkb/Q9LH92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH92-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARVQLLLCFTILFASVNLLDVVSAHLKLKPTLPQIEPPQTLKDVEPYTVKVVMVFVSDLEKECPKTNKFKTFFEKLRAVAKYVCPIQRKDQVDYDKDMKAKAGGLVRAISSFAIGKIKKEIQEDKMEVINTFKFMRFLATKIVGSRKKEESEESMKLTAEQQKEIKEGILRWETIITRITNTMVSSTTNSASSNEESSVGKEASSENSKSSGKESESSAKGESETSAKGESKTSAKGESETSSSKSAGGSSTSATKEESSASQSSGVTVTQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQLKGTMIAPPKERKGLFSRIKSAAGKLSGAMGVIRSRIGSKSAEVKKNMEAYQEQVMKTLEELDTIHSQIVSQTKGKQEGSLTCTPEQQTQIKTTITKWEQVTTQFVETAIQSETQSSSTTSSSVGKMNTN", "length": 434, "header": "tr|Q9LH92-1|Q9LH92_ARATH Isoform 1 of Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH92-1" }, "isoforms": [ { "isoform_ac": "Q9LH92-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH92/entry#Q9LH92-1", "sequence": { "sequence": "MARVQLLLCFTILFASVNLLDVVSAHLKLKPTLPQIEPPQTLKDVEPYTVKVVMVFVSDLEKECPKTNKFKTFFEKLRAVAKYVCPIQRKDQVDYDKDMKAKAGGLVRAISSFAIGKIKKEIQEDKMEVINTFKFMRFLATKIVGSRKKEESEESMKLTAEQQKEIKEGILRWETIITRITNTMVSSTTNSASSNEESSVGKEASSENSKSSGKESESSAKGESETSAKGESKTSAKGESETSSSKSAGGSSTSATKEESSASQSSGVTVTQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQLKGTMIAPPKERKGLFSRIKSAAGKLSGAMGVIRSRIGSKSAEVKKNMEAYQEQVMKTLEELDTIHSQIVSQTKGKQEGSLTCTPEQQTQIKTTITKWEQVTTQFVETAIQSETQSSSTTSSSVGKMNTN", "length": 434, "header": "tr|Q9LH92-1|Q9LH92_ARATH Isoform 1 of Mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH92-1" }, "locus": { "chromosome": "3", "start_pos": 10827647, "end_pos": 10829629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28820.1", "url": "https://www.ensemblgenomes.org/id/AT3G28820.1" }, { "database": "Ensembl Peptide", "id": "AT3G28820.1", "url": "https://www.ensemblgenomes.org/id/AT3G28820.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 111, "end_pos": 111, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH92" } ], "site_lbl": "Ser111" }, { "start_pos": 112, "end_pos": 112, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH92" } ], "site_lbl": "Ser112" }, { "start_pos": 283, "end_pos": 283, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH92" } ], "site_lbl": "Thr283" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LH92", "url": "https://www.uniprot.org/uniprotkb/Q9LH92" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LH92", "url": "https://www.uniprot.org/uniprotkb/Q9LH92" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28820", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LH92", "url": "https://www.uniprot.org/uniprotkb/Q9LH92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LH92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH92" }, { "id": "PF06746", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1216", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 201, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 111, 112, 283 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LH95-1", "uniprot_ac": "Q9LH95", "uniprot_id": "Q9LH95_ARATH", "mass": { "chemical_mass": 62766.0, "monoisotopic_mass": 62766.0 }, "refseq": { "ac": "NP_189521", "name": "transmembrane protein, putative (DUF1216)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189521" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "Q9LH95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LH95/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": "NP_189521", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189521" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH95", "url": "https://www.uniprot.org/uniprotkb/Q9LH95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LH95", "locus": {} } ], "crossref": [ { "id": "822511", "url": "https://www.ncbi.nlm.nih.gov/gene/822511", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TTHYMAD", "url": "https://omabrowser.org/oma/group/TTHYMAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189521", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189521", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LH95", "url": "https://www.uniprot.org/uniprotkb/Q9LH95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LH95-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKNLLAICLVFMVASSVVYEVQGTFLLKLYLRRKFPRRCIDFAPYAGKGMLMLVSNLEGGCPATREFKQFFSTFKSYMSFISSASISASKNIDVEMNGRCELLSKAMSALTGSKSSQSSELKMTMLSMGKTLVEQKRQGSRMMSLKQKKELVVAMVKWTRMVITFVKSVAEKRGKSIDESSYGLDVDVNASIGSSSGSDGSSSSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGNTYKDTTGSSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSESASMKKESNSKSESESAASGSVSKTKETNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASSKGSASASAGASASASAGASASAEESAASQKKESNSKSSSSSSSTTSVKEVETQTSSEVNSFISNLEKKYTGNSELKVFFEKLKTSMSASAKLSTSNAKELVTGMRSAASKIAEAMMFVSSRFSKSEETKTSMASCQQEVMQSLKELQDINSQIVSGKTVTSTQQTELKQTITKWEQVTTQFVETAASSSSSSSSSSSSSSSSSQGSAKMAMKN", "length": 608, "header": "tr|Q9LH95-1|Q9LH95_ARATH Isoform 1 of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LH95-1" }, "isoforms": [ { "isoform_ac": "Q9LH95-1", "url": "https://www.uniprot.org/uniprotkb/Q9LH95/entry#Q9LH95-1", "sequence": { "sequence": 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"https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 310, "start_aa": "Thr", "end_pos": 310, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr310", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 315, "start_aa": "Thr", "end_pos": 315, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr315", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 384, "start_aa": "Thr", "end_pos": 384, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr384", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 255, "end_pos": 255, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LH95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH95" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser255" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LH95", "url": "https://www.uniprot.org/uniprotkb/Q9LH95" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LH95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LH95" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LH95", "url": "https://www.uniprot.org/uniprotkb/Q9LH95" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": 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Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHA0", "url": "https://www.uniprot.org/uniprotkb/Q9LHA0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHA0", "url": "https://www.uniprot.org/uniprotkb/Q9LHA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28750", "name": "", "url": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28220", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFSHRET", "url": "https://omabrowser.org/oma/group/WFSHRET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46162:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46162:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22486", "database": "Pfam", "categories": [ "Protein Classification", 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37229:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319675", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319675", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G32930", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G32930", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LHC4", "url": "https://www.uniprot.org/uniprotkb/Q9LHC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPGSKLTLHRIFRYPKKISNGSTRASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADLGFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLSDDDHFRDATSHKGCQIRRESAHGQSVCCNNVRALFDELPTPHLVVEITPFPAGPLTENDYLKAEKLERILRSGANI", "length": 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"MGSLSGIIQRPLVAAAAVITASVSADVSERFSSLRSLVRGSESEQIAPSVSGLVQEERSLWVSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLATSVTSLSALRSVYQSAELAKASKPVAFTIGASLVVPDISYRWHLPEPSAVDMSGSSSCVSEKNRTVVVLLGWLGSKQKHLKKYADWYTSKGYHVITFTLPMNEIMSYQVGGKAEKNIESLVNHLADWLDEEQKKNLVFHTFSNTGWLTYGAILEKFQKQDSSLMGRVKGCIVDSAPVAAADPTVWASGFSAAFLKKSSVATKGSASSSYESNGINISQPKPAATETALLLVLEKFFAVILNLPKVNRRLADVLDTLSTAQPSCPQLYIYSSADRVIPVEQVESFIVEQRKAGHEVRACNFISSPHVDHFRSNPELYTAELNHFMNNFVLSCCHHSS", "length": 434, "header": "tr|Q9LHE8-1|Q9LHE8_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHE8-1" }, "isoforms": [ { "isoform_ac": "Q9LHE8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHE8/entry#Q9LHE8-1", "sequence": { "sequence": 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M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHE8", "url": "https://www.uniprot.org/uniprotkb/Q9LHE8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHE8", "url": "https://www.uniprot.org/uniprotkb/Q9LHE8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19970", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear outer membrane", "id": "GO:0005640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005640", "evidence": [ { "database": "UniProtKB", "id": "Q9LHE8", "url": "https://www.uniprot.org/uniprotkb/Q9LHE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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"name": "Plant thionin family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078206" }, "gene_names": [], "protein_names": [ { "name": "Plant thionin family protein", "type": "synonym", "evidence": [ { "id": "NP_001078206", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078206" }, { "id": "Q9LHF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHF2", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2", "locus": {} } ], "crossref": [ { "id": "5008027", "url": "https://www.ncbi.nlm.nih.gov/gene/5008027", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G24465", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24465", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTSCKIM", "url": "https://omabrowser.org/oma/group/YTSCKIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LHF2", "url": "https://www.orthodb.org/?gene=Q9LHF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31710:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31710:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001078206", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078206", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G24465", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24465", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LHF2", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHF2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQTTKKIYSVLMIVVLFTMIVSTYASTMEVCVKHCIPNQCMKVSQKATLPLCETACTKLCNENKDEKYIVPRSYCDGLFWFLCDN", "length": 87, "header": "tr|Q9LHF2-1|Q9LHF2_ARATH Isoform 1 of Plant thionin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LHF2-1" }, "isoforms": [ { "isoform_ac": "Q9LHF2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2/entry#Q9LHF2-1", "sequence": { "sequence": "MATQTTKKIYSVLMIVVLFTMIVSTYASTMEVCVKHCIPNQCMKVSQKATLPLCETACTKLCNENKDEKYIVPRSYCDGLFWFLCDN", "length": 87, "header": "tr|Q9LHF2-1|Q9LHF2_ARATH Isoform 1 of Plant thionin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LHF2-1" }, "locus": { "chromosome": "3", "start_pos": 8894870, "end_pos": 8895140, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24465.1", "url": "https://www.ensemblgenomes.org/id/AT3G24465.1" }, { "database": "Ensembl Peptide", "id": "AT3G24465.1", "url": "https://www.ensemblgenomes.org/id/AT3G24465.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHF2", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHF2", "url": "https://www.uniprot.org/uniprotkb/Q9LHF2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ 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"categories": [ "Protein Classification" ] }, { "id": "ath:AT3G12410", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12410", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GVQWTPI", "url": "https://omabrowser.org/oma/group/GVQWTPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LHG7", "url": "https://www.orthodb.org/?gene=Q9LHG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13620", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13620", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13620:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13620:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187847", "url": 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E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHG7", "url": "https://www.uniprot.org/uniprotkb/Q9LHG7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis 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1 of FKBP-type peptidyl-prolyl cis-trans isomerase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHH3-1" }, "isoforms": [ { "isoform_ac": "Q9LHH3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHH3/entry#Q9LHH3-1", "sequence": { "sequence": "MAITPLRITNPFPSLRFIPAGKPNALRIFTVHATDVESTEDTQPDPETTQSESGTDPDQFESRLSNIRLRYRSGTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERINGRIAGLGLTALLLVELATGKSVLNYHTPSVVFLQIYFVAAVSAMFVKIEKEKVSVWPKD", "length": 186, "header": "tr|Q9LHH3-1|Q9LHH3_ARATH Isoform 1 of FKBP-type peptidyl-prolyl cis-trans isomerase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LHH3-1" }, "locus": { "chromosome": "3", "start_pos": 3930019, "end_pos": 3931000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12345.1", "url": "https://www.ensemblgenomes.org/id/AT3G12345.1" }, { "database": "Ensembl Peptide", "id": "AT3G12345.1", "url": "https://www.ensemblgenomes.org/id/AT3G12345.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHH3" } ], "site_lbl": "Thr4" }, { "start_pos": 88, "end_pos": 88, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHH3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser88" }, { "start_pos": 91, "end_pos": 91, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHH3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser91" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHH3", "url": "https://www.uniprot.org/uniprotkb/Q9LHH3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LHH3", "url": "https://www.uniprot.org/uniprotkb/Q9LHH3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9LHH3", "url": "https://www.uniprot.org/uniprotkb/Q9LHH3" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LHH3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHH3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHH3", "url": "https://www.uniprot.org/uniprotkb/Q9LHH3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12345", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "isomerase activity", "id": "GO:0016853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016853", "evidence": [ { "database": "UniProtKB", "id": "Q9LHH3", "url": 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"id": "Q9LHI8", "url": "https://www.orthodb.org/?gene=Q9LHI8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_187826", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187826", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LHI8", "url": "https://www.uniprot.org/uniprotkb/Q9LHI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHI8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVKKLRVAKWKKERLRRSLMKAESKASDVLSFTLSWRDLESHFDSIESDLVKRSQEIESKEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKLDRLKREIESEEKKRFLVQKLNRERKFELKRTREQVEALQKNDMKLDVKHSKEMSEELLVQQEKYEEILKKKKLEEKKLKDCTRDLALREGDLRWVSMRMTKRCEELRWEKKKNLVLCKRNEEAERKLKHLNRALEEKQKEVDLIEKRLGEWRDVKGRGNGDTSGDE", 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"https://www.ensemblgenomes.org/id/AT3G12190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHI8", "url": "https://www.uniprot.org/uniprotkb/Q9LHI8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHI8", "url": "https://www.uniprot.org/uniprotkb/Q9LHI8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9LHI8", 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"https://www.uniprot.org/uniprotkb/Q9LHM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGVTPNYYHSYTFFFFFFVVLLALFLHVFSINTLSSTETLTISSNRTIVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVWVANRDNPLSKSIGTLKISYANLVLLDHSGTLVWSTNLTRTVKSPVVAELLDNGNFVLRDSKGNYQNRFLWQSFDYPVDTLLPEMKIGRDLKTGHETFLSSWRSPYDPSSGDFSFKLGTQGLPEFYLFKKEFLLYRSGPWNGVGFSGIPTMQNWSYFDVVNNFIENRGEVAYSFKVTDHSMHYVRFTLTTERLLQISRWDTTSSEWNLFGVLPTEKCDLYQICGRDSYCDTKTSPTCNCIKGFVPKNVTAWALGDTFEGCVRKSRLNCHRDGFFLLMKRMKLPGTSTAIVDKTIGLNECKERCSKDCNCTGFANKDIQNGGSGCVIWTGGAHGYEELRRRRSRSICQNRPL", "length": 439, "header": "tr|Q9LHM1-1|Q9LHM1_ARATH Isoform 1 of non-specific serine/threonine protein kinase OS=Arabidopsis thaliana OX=3702 GN=MEC18.8 PE=1 SV=1 CANONICAL=Q9LHM1-1" }, "isoforms": [ { "isoform_ac": "Q9LHM1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1/entry#Q9LHM1-1", "sequence": { "sequence": "MRGVTPNYYHSYTFFFFFFVVLLALFLHVFSINTLSSTETLTISSNRTIVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVWVANRDNPLSKSIGTLKISYANLVLLDHSGTLVWSTNLTRTVKSPVVAELLDNGNFVLRDSKGNYQNRFLWQSFDYPVDTLLPEMKIGRDLKTGHETFLSSWRSPYDPSSGDFSFKLGTQGLPEFYLFKKEFLLYRSGPWNGVGFSGIPTMQNWSYFDVVNNFIENRGEVAYSFKVTDHSMHYVRFTLTTERLLQISRWDTTSSEWNLFGVLPTEKCDLYQICGRDSYCDTKTSPTCNCIKGFVPKNVTAWALGDTFEGCVRKSRLNCHRDGFFLLMKRMKLPGTSTAIVDKTIGLNECKERCSKDCNCTGFANKDIQNGGSGCVIWTGGAHGYEELRRRRSRSICQNRPL", "length": 439, "header": "tr|Q9LHM1-1|Q9LHM1_ARATH Isoform 1 of non-specific serine/threonine protein kinase OS=Arabidopsis thaliana OX=3702 GN=MEC18.8 PE=1 SV=1 CANONICAL=Q9LHM1-1" }, "locus": { "chromosome": "3", "start_pos": 3818046, "end_pos": 3819642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12000.1", "url": "https://www.ensemblgenomes.org/id/AT3G12000.1" }, { "database": "Ensembl Peptide", "id": "AT3G12000.1", "url": "https://www.ensemblgenomes.org/id/AT3G12000.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 373, "end_pos": 373, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHM1" } ], "site_lbl": "Thr373" }, { "start_pos": 374, "end_pos": 374, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHM1" } ], "site_lbl": "Ser374" }, { "start_pos": 375, "end_pos": 375, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHM1" } ], "site_lbl": "Thr375" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "recognition of pollen", "id": "GO:0048544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048544", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM1", "url": "https://www.uniprot.org/uniprotkb/Q9LHM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23304-1", "O24527-1", "O48963-1", "O49717-1", "O49839-1", "O49840-1", "O64629-1", "O64682-1", "O64768-1", "O64782-1", "O64816-1", "O64825-1", "O65554-1", "O80345-1", "O80396-1", "O80397-1", "O80528-1", "O80673-1", "O80888-1", "O80902-1", "O80939-1", "O80963-1", "O81291-1", "O81472-1", "O81833-1", "O81905-1", "P0C5E2-1", "P24100-1", "P25859-1", "P27450-1", "P47735-1", "Q9M9C5-1", "Q9S7I6-1", "Q9SKG5-1", "A8R7E6-1", "B9DGY1-1", "C0LGD9-1", "C0LGE0-1", "C0LGE4-1", "C0LGF4-1", "C0LGF5-1", "C0LGG6-1", "C0LGG8-1", "C0LGH8-1", "C0LGI5-1", "C0LGJ1-1", "C0LGJ9-1", "C0LGL4-1", "C0LGL9-1", "C0LGN2-1", "C0LGP2-1", "C0LGP9-1", "C0LGQ4-1", "C0LGQ5-1", "C0LGQ7-1", "C0LGQ9-1", "C0LGR3-1", "C0LGR6-1", "C0LGR9-1", "C0LGS2-1", "C0LGS3-1", "C0LGT1-1", "C0LGT6-1", "C0LGU0-1", "C0LGU1-1", "C0LGU7-1", "C0LGV1-1", "C0LGW2-1", "C0LGW6-1", "C0LGX3-1", "D7SFH9-1", "F4HRJ4-1", "F4HU55-1", "F4I2N7-1", "F4I4F2-1", "F4I7Y4-1", "F4IS56-1", "F4IVI0-1", "F4J0D2-1", "F4JTP5-1", "F4JY37-1", "F4JZW1-1", "F4K6B8-1", "O22040-1", "O22042-1", "O22476-1", "O22558-1", "O22833-1", "O22932-1", "O81069-1", "O82318-1", 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"ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG7" } ] } ] }, { "uniprot_ac": "C0LGG8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGG8" } ] } ] }, { "uniprot_ac": "C0LGG9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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"ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH3" } ] } ] }, { "uniprot_ac": "C0LGH8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGH8" } ] } ] }, { "uniprot_ac": "C0LGI2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGI2", "database": "UniProtKB", "url": 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"ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGJ9" } ] } ] }, { "uniprot_ac": "C0LGK4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGK4" } ] } ] }, { "uniprot_ac": "C0LGK9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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"url": "https://www.uniprot.org/uniprotkb/C0LGP2" } ] } ] }, { "uniprot_ac": "C0LGP4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP4" } ] } ] }, { "uniprot_ac": "C0LGP9", "gene_name": "IMK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGP9" } ] } ] }, { "uniprot_ac": "C0LGQ4", "gene_name": "MDIS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ4" } ] } ] }, { "uniprot_ac": "C0LGQ5", "gene_name": "GSO1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ5" } ] } ] }, { "uniprot_ac": "C0LGQ7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ7" } ] } ] }, { "uniprot_ac": "C0LGQ9", "gene_name": "GHR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGQ9" } ] } ] }, { "uniprot_ac": "C0LGR3", "gene_name": "RGI3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR3" } ] } ] }, { "uniprot_ac": "C0LGR6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR6" } ] } ] }, { "uniprot_ac": "C0LGR9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGR9" } ] } ] }, { "uniprot_ac": "C0LGS2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS2" } ] } ] }, { "uniprot_ac": "C0LGS3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGS3" } ] } ] }, { "uniprot_ac": "C0LGT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT1" } ] } ] }, { "uniprot_ac": "C0LGT5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT5" } ] } ] }, { "uniprot_ac": "C0LGT6", "gene_name": "EFR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGT6" } ] } ] }, { "uniprot_ac": "C0LGU0", "gene_name": "PRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU0" } ] } ] }, { "uniprot_ac": "C0LGU1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU1" } ] } ] }, { "uniprot_ac": "C0LGU5", "gene_name": "CIK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU5" } ] } ] }, { "uniprot_ac": "C0LGU7", "gene_name": "MDIS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGU7" } ] } ] }, { "uniprot_ac": "C0LGV0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV0" } ] } ] }, { "uniprot_ac": "C0LGV1", "gene_name": "RGI2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGV1" } ] } ] }, { "uniprot_ac": "C0LGW2", "gene_name": "PAM74", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW2" } ] } ] }, { "uniprot_ac": "C0LGW6", "gene_name": "ERL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGW6" } ] } ] }, { "uniprot_ac": "C0LGX1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX1" } ] } ] }, { "uniprot_ac": "C0LGX3", "gene_name": "HSL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "C0LGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C0LGX3" } ] } ] }, { "uniprot_ac": "D7SFH9", "gene_name": "LRK10L-2.6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "sn-glycero-3-phospho-(1'-rac-glycerol) + H2O = sn-glycerol 3-phosphate + glycerol + H(+).", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] }, { "ec_number": "3.1.4.46", "activity": "", "evidence": [ { "id": "D7SFH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/D7SFH9" } ] } ] }, { "uniprot_ac": "F4HPN2", "gene_name": "IRE4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPN2" } ] } ] }, { "uniprot_ac": "F4HPR9", "gene_name": "ATMAP4K", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HPR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HPR9" } ] } ] }, { "uniprot_ac": "F4HQ17", "gene_name": "LRK10L-1.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ17" } ] } ] }, { "uniprot_ac": "F4HQ20", "gene_name": "LRK10L-2.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ20" } ] } ] }, { "uniprot_ac": "F4HQ22", "gene_name": "LRK10L-2.4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ22" } ] } ] }, { "uniprot_ac": "F4HQ23", "gene_name": "LRK10L-2.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ23" } ] } ] }, { "uniprot_ac": "F4HQ34", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HQ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HQ34" } ] } ] }, { "uniprot_ac": "F4HRJ4", "gene_name": "MAPKKK3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4HRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HRJ4" } ] } ] }, { "uniprot_ac": "F4HU55", "gene_name": "BSK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HU55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HU55" } ] } ] }, { "uniprot_ac": "F4HVB3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVB3" } ] } ] }, { "uniprot_ac": "F4HVH9", "gene_name": "RAF11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HVH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HVH9" } ] } ] }, { "uniprot_ac": "F4HWU0", "gene_name": "CARK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HWU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HWU0" } ] } ] }, { "uniprot_ac": "F4HX16", "gene_name": "PBL41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HX16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HX16" } ] } ] }, { "uniprot_ac": "F4HXP9", "gene_name": "XI-C", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HXP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HXP9" } ] } ] }, { "uniprot_ac": "F4HYG2", "gene_name": "IRE3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4HYG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYG2" } ] } ] }, { "uniprot_ac": "F4I065", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I065", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I065" } ] } ] }, { "uniprot_ac": "F4I0Z0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I0Z0" } ] } ] }, { "uniprot_ac": "F4I2K0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2K0" } ] } ] }, { "uniprot_ac": "F4I2N7", "gene_name": "RLK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I2N7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I2N7" } ] } ] }, { "uniprot_ac": "F4I3K4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3K4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3K4" } ] } ] }, { "uniprot_ac": "F4I3M3", "gene_name": "BSK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3M3" } ] } ] }, { "uniprot_ac": "F4I3V3", "gene_name": "LRK10L-1.5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I3V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I3V3" } ] } ] }, { "uniprot_ac": "F4I4F2", "gene_name": "RHS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4F2" } ] } ] }, { "uniprot_ac": "F4I6E4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I6E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6E4" } ] } ] }, { "uniprot_ac": "F4I7Y4", "gene_name": "BSK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4I7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I7Y4" } ] } ] }, { "uniprot_ac": "F4IAN2", "gene_name": "M3KDELTA7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IAN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAN2" } ] } ] }, { "uniprot_ac": "F4IB60", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB60" } ] } ] }, { "uniprot_ac": "F4IB76", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IB76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB76" } ] } ] }, { "uniprot_ac": "F4IP61", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IP61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IP61" } ] } ] }, { "uniprot_ac": "F4IPV6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IPV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV6" } ] } ] }, { "uniprot_ac": "F4IS56", "gene_name": "ILK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IS56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS56" } ] } ] }, { "uniprot_ac": "F4IV25", "gene_name": "PAX", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV25" } ] } ] }, { "uniprot_ac": "F4IVI0", "gene_name": "BUB1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4IVI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVI0" } ] } ] }, { "uniprot_ac": "F4J0D2", "gene_name": "PBL36", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0D2" } ] } ] }, { "uniprot_ac": "F4J3A9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3A9" } ] } ] }, { "uniprot_ac": "F4J3H7", "gene_name": "ZRK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3H7" } ] } ] }, { "uniprot_ac": "F4J551", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J551", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J551" } ] } ] }, { "uniprot_ac": "F4J6F6", "gene_name": "IREH1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J6F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6F6" } ] } ] }, { "uniprot_ac": "F4J927", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J927" } ] } ] }, { "uniprot_ac": "F4J982", "gene_name": "SRPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J982" } ] } ] }, { "uniprot_ac": "F4J9G8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4J9G8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9G8" } ] } ] }, { "uniprot_ac": "F4JC18", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC18" } ] } ] }, { "uniprot_ac": "F4JDN8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JDN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDN8" } ] } ] }, { "uniprot_ac": "F4JEQ2", "gene_name": "PBL23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JEQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEQ2" } ] } ] }, { "uniprot_ac": "F4JI10", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI10" } ] } ] }, { "uniprot_ac": "F4JN22", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JN22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JN22" } ] } ] }, { "uniprot_ac": "F4JPT1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPT1" } ] } ] }, { "uniprot_ac": "F4JPX3", "gene_name": "PBL20", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPX3" } ] } ] }, { "uniprot_ac": "F4JQX7", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JQX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQX7" } ] } ] }, { "uniprot_ac": "F4JSF8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "F4JSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JSF8" } ] } ] }, { "uniprot_ac": "F4JTP5", "gene_name": "STY46", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JTP5" } ] } ] }, { "uniprot_ac": "F4JVS7", "gene_name": "MAPKKK16", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "F4JVS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JVS7" } ] } ] }, { "uniprot_ac": "F4JY37", "gene_name": "RUK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JY37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JY37" } ] } ] }, { "uniprot_ac": "F4JZW1", "gene_name": "PBL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4JZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JZW1" } ] } ] }, { "uniprot_ac": "F4K645", "gene_name": "RAF10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K645" } ] } ] }, { "uniprot_ac": "F4K6B8", "gene_name": "RGI4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4K6B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4K6B8" } ] } ] }, { "uniprot_ac": "F4KA50", "gene_name": "LRK10L-2.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA50" } ] } ] }, { "uniprot_ac": "F4KA51", "gene_name": "LRK10L-2.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KA51" } ] } ] }, { "uniprot_ac": "F4KEF0", "gene_name": "MUL8.7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KEF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KEF0" } ] } ] }, { "uniprot_ac": "F4KFD4", "gene_name": "MYH9.10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KFD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KFD4" } ] } ] }, { "uniprot_ac": "F4KI00", "gene_name": "ATRLCK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "F4KI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4KI00" } ] } ] }, { "uniprot_ac": "O04086", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04086" } ] } ] }, { "uniprot_ac": "O04533", "gene_name": "LECRK52", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04533" } ] } ] }, { "uniprot_ac": "O04534", "gene_name": "LECRK51", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O04534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O04534" } ] } ] }, { "uniprot_ac": "O22040", "gene_name": "ANP1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22040" } ] } ] }, { "uniprot_ac": "O22042", "gene_name": "ANP3", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O22042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22042" } ] } ] }, { "uniprot_ac": "O22178", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22178", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22178" } ] } ] }, { "uniprot_ac": "O22476", "gene_name": "BRI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476" } ] } ] }, { "uniprot_ac": "O22558", "gene_name": "STY8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22558", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22558" } ] } ] }, { "uniprot_ac": "O22764", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22764", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22764" } ] } ] }, { "uniprot_ac": "O22833", "gene_name": "LECRK54", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22833" } ] } ] }, { "uniprot_ac": "O22834", "gene_name": "LECRK53", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22834" } ] } ] }, { "uniprot_ac": "O22932", "gene_name": "CIPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22932", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22932" } ] } ] }, { "uniprot_ac": "O22971", "gene_name": "CIPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O22971", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22971" } ] } ] }, { "uniprot_ac": "O23081", "gene_name": "CRK41", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O23081", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23081" } ] } ] }, { "uniprot_ac": "O23082", "gene_name": "CRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23082", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23082" } ] } ] }, { "uniprot_ac": "O23145", "gene_name": "ASK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23145", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23145" } ] } ] }, { "uniprot_ac": "O23236", "gene_name": "MPK14", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O23236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23236" } ] } ] }, { "uniprot_ac": "O23304", "gene_name": "BLUS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23304", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23304" } ] } ] }, { "uniprot_ac": "O23334", "gene_name": "DL3430W", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O23334", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23334" } ] } ] }, { "uniprot_ac": "O24527", "gene_name": "SIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O24527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O24527" } ] } ] }, { "uniprot_ac": "O48814", "gene_name": "BIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48814" } ] } ] }, { "uniprot_ac": "O48837", "gene_name": "LECRKS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48837" } ] } ] }, { "uniprot_ac": "O48963", "gene_name": "PHOT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O48963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O48963" } ] } ] }, { "uniprot_ac": "O49318", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49318" } ] } ] }, { "uniprot_ac": "O49338", "gene_name": "CARK9", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "O49338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49338" } ] } ] }, { "uniprot_ac": "O49445", "gene_name": "LECRK72", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49445" } ] } ] }, { "uniprot_ac": "O49545", "gene_name": "BAM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545" } ] } ] }, { "uniprot_ac": "O49564", "gene_name": "CRK27", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O49564", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49564" } ] } ] }, { "uniprot_ac": "O49717", "gene_name": "CPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49717", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49717" } ] } ] }, { "uniprot_ac": "O49839", "gene_name": "PBL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49839", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49839" } ] } ] }, { "uniprot_ac": "O49840", "gene_name": "PBL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O49840", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49840" } ] } ] }, { "uniprot_ac": "O64477", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64477", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64477" } ] } ] }, { "uniprot_ac": "O64556", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64556" } ] } ] }, { "uniprot_ac": "O64573", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64573" } ] } ] }, { "uniprot_ac": "O64629", "gene_name": "AUR3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64629", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64629" } ] } ] }, { "uniprot_ac": "O64639", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64639", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64639" } ] } ] }, { "uniprot_ac": "O64682", "gene_name": "PID", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64682", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64682" } ] } ] }, { "uniprot_ac": "O64768", "gene_name": "RAF24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64768", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64768" } ] } ] }, { "uniprot_ac": "O64770", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64770", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64770" } ] } ] }, { "uniprot_ac": "O64771", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64771", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64771" } ] } ] }, { "uniprot_ac": "O64774", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64774" } ] } ] }, { "uniprot_ac": "O64776", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64776" } ] } ] }, { "uniprot_ac": "O64777", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64777" } ] } ] }, { "uniprot_ac": "O64778", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64778" } ] } ] }, { "uniprot_ac": "O64780", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64780" } ] } ] }, { "uniprot_ac": "O64781", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64781", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64781" } ] } ] }, { "uniprot_ac": "O64782", "gene_name": "SD129", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "O64782", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64782" } ] } ] }, { "uniprot_ac": "O64783", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64783", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64783" } ] } ] }, { "uniprot_ac": "O64784", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64784" } ] } ] }, { "uniprot_ac": "O64793", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64793", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64793" } ] } ] }, { "uniprot_ac": "O64794", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64794" } ] } ] }, { "uniprot_ac": "O64812", "gene_name": "SRK2J", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64812" } ] } ] }, { "uniprot_ac": "O64816", "gene_name": "CKA4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64816" } ] } ] }, { "uniprot_ac": "O64817", "gene_name": "CKA3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64817", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64817" } ] } ] }, { "uniprot_ac": "O64825", "gene_name": "LYK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64825", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64825" } ] } ] }, { "uniprot_ac": "O64842", "gene_name": "PBL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O64842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O64842" } ] } ] }, { "uniprot_ac": "O65238", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65238" } ] } ] }, { "uniprot_ac": "O65405", "gene_name": "CRK28", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65405", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65405" } ] } ] }, { "uniprot_ac": "O65440", "gene_name": "BAM3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440" } ] } ] }, { "uniprot_ac": "O65468", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65468", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65468" } ] } ] }, { "uniprot_ac": "O65472", "gene_name": "CRK12", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65472" } ] } ] }, { "uniprot_ac": "O65476", "gene_name": "CRK16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65476" } ] } ] }, { "uniprot_ac": "O65479", "gene_name": "CRK20", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65479" } ] } ] }, { "uniprot_ac": "O65482", "gene_name": "CRK23", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65482", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65482" } ] } ] }, { "uniprot_ac": "O65483", "gene_name": "CRK24", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "O65483", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65483" } ] } ] }, { "uniprot_ac": "O65530", "gene_name": "PERK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65530", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65530" } ] } ] }, { "uniprot_ac": "O65554", "gene_name": "CIPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65554", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65554" } ] } ] }, { "uniprot_ac": "O65924", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O65924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65924" } ] } ] }, { "uniprot_ac": "O80345", "gene_name": "CDKF-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "O80345", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80345" } ] } ] }, { "uniprot_ac": "O80396", "gene_name": "MKK3", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80396" } ] } ] }, { "uniprot_ac": "O80397", "gene_name": "MKK4", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "O80397", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80397" } ] } ] }, { "uniprot_ac": "O80528", "gene_name": "HASPIN", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80528", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80528" } ] } ] }, { "uniprot_ac": "O80673", "gene_name": "CRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80673", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80673" } ] } ] }, { "uniprot_ac": "O80719", "gene_name": "CARK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80719", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80719" } ] } ] }, { "uniprot_ac": "O80888", "gene_name": "MAPKKK17", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "O80888", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80888" } ] } ] }, { "uniprot_ac": "O80902", "gene_name": "CIPK22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80902" } ] } ] }, { "uniprot_ac": "O80939", "gene_name": "LECRK41", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939" } ] } ] }, { "uniprot_ac": "O80963", "gene_name": "CCR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963" } ] } ] }, { "uniprot_ac": "O81064", "gene_name": "PBL37", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81064", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81064" } ] } ] }, { "uniprot_ac": "O81067", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81067" } ] } ] }, { "uniprot_ac": "O81069", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069" } ] } ] }, { "uniprot_ac": "O81291", "gene_name": "LECRK44", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291" } ] } ] }, { "uniprot_ac": "O81292", "gene_name": "LECRK43", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81292" } ] } ] }, { "uniprot_ac": "O81472", "gene_name": "MEKK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "O81472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81472" } ] } ] }, { "uniprot_ac": "O81832", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81832", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81832" } ] } ] }, { "uniprot_ac": "O81833", "gene_name": "SD11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833" } ] } ] }, { "uniprot_ac": "O81905", "gene_name": "SD18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905" } ] } ] }, { "uniprot_ac": "O81906", "gene_name": "B120", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O81906", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81906" } ] } ] }, { "uniprot_ac": "O82318", "gene_name": "SKM1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318" } ] } ] }, { "uniprot_ac": "O82754", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "O82754", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82754" } ] } ] }, { "uniprot_ac": "P0C5E2", "gene_name": "LRK10L-1.2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ] } ] }, { "uniprot_ac": "P0DKI6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P0DKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DKI6" } ] } ] }, { "uniprot_ac": "P24100", "gene_name": "CDKA-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P24100", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24100" } ] } ] }, { "uniprot_ac": "P25859", "gene_name": "CDKB1-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "P25859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25859" } ] } ] }, { "uniprot_ac": "P27450", "gene_name": "CST", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P27450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27450" } ] } ] }, { "uniprot_ac": "P42158", "gene_name": "CKL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42158" } ] } ] }, { "uniprot_ac": "P42818", "gene_name": "ATPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P42818", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P42818" } ] } ] }, { "uniprot_ac": "P43288", "gene_name": "ASK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43288", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43288" } ] } ] }, { "uniprot_ac": "P43289", "gene_name": "ASK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43289", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43289" } ] } ] }, { "uniprot_ac": "P43291", "gene_name": "SRK2A", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43291" } ] } ] }, { "uniprot_ac": "P43292", "gene_name": "SRK2G", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43292" } ] } ] }, { "uniprot_ac": "P43293", "gene_name": "PBL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43293", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43293" } ] } ] }, { "uniprot_ac": "P43294", "gene_name": "MHK", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "P43294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43294" } ] } ] }, { "uniprot_ac": "P43298", "gene_name": "TMK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298" } ] } ] }, { "uniprot_ac": "P46573", "gene_name": "PBL10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P46573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46573" } ] } ] }, { "uniprot_ac": "P47735", "gene_name": "RLK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P47735", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47735" } ] } ] }, { "uniprot_ac": "P51566", "gene_name": "AFC1", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51566", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51566" } ] } ] }, { "uniprot_ac": "P51567", "gene_name": "AFC2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51567" } ] } ] }, { "uniprot_ac": "P51568", "gene_name": "AFC3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "P51568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51568" } ] } ] }, { "uniprot_ac": "P92937", "gene_name": "CIPK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92937", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92937" } ] } ] }, { "uniprot_ac": "P92958", "gene_name": "KIN11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P92958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92958" } ] } ] }, { "uniprot_ac": "P93025", "gene_name": "PHOT2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93025" } ] } ] }, { "uniprot_ac": "P93050", "gene_name": "RKF3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050" } ] } ] }, { "uniprot_ac": "P93749", "gene_name": "CARK4", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "P93749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93749" } ] } ] }, { "uniprot_ac": "P93756", "gene_name": "SD31", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756" } ] } ] }, { "uniprot_ac": "P93759", "gene_name": "CPK14", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P93759", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93759" } ] } ] }, { "uniprot_ac": "Q05609", "gene_name": "CTR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05609" } ] } ] }, { "uniprot_ac": "Q05999", "gene_name": "D6PKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q05999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05999" } ] } ] }, { "uniprot_ac": "Q06548", "gene_name": "PBL9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06548", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ] } ] }, { "uniprot_ac": "Q06850", "gene_name": "CPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q06850", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06850" } ] } ] }, { "uniprot_ac": "Q08466", "gene_name": "CKA2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08466", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08466" } ] } ] }, { "uniprot_ac": "Q08467", "gene_name": "CKA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q08467", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08467" } ] } ] }, { "uniprot_ac": "Q0PW40", "gene_name": "CRK13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ] } ] }, { "uniprot_ac": "Q0V7T5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0V7T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ] } ] }, { "uniprot_ac": "Q0WNY5", "gene_name": "WAKL18", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ] } ] }, { "uniprot_ac": "Q0WPH8", "gene_name": "NEK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WPH8" } ] } ] }, { "uniprot_ac": "Q0WRY5", "gene_name": "PBL7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WRY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WRY5" } ] } ] }, { "uniprot_ac": "Q0WVM4", "gene_name": "CIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q0WVM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WVM4" } ] } ] }, { "uniprot_ac": "Q1PDV6", "gene_name": "PBL27", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PDV6" } ] } ] }, { "uniprot_ac": "Q1PE17", "gene_name": "CPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE17" } ] } ] }, { "uniprot_ac": "Q1PE89", "gene_name": "PBL24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ] } ] }, { "uniprot_ac": "Q1PEM5", "gene_name": "PERK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ] } ] }, { "uniprot_ac": "Q1PFB9", "gene_name": "AGC1-7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFB9" } ] } ] }, { "uniprot_ac": "Q1PFH8", "gene_name": "CPK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q1PFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PFH8" } ] } ] }, { "uniprot_ac": "Q2MHE4", "gene_name": "HT1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2MHE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2MHE4" } ] } ] }, { "uniprot_ac": "Q2QAV0", "gene_name": "TIO", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2QAV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2QAV0" } ] } ] }, { "uniprot_ac": "Q2V338", "gene_name": "WNK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V338", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V338" } ] } ] }, { "uniprot_ac": "Q2V419", "gene_name": "CDKB1-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q2V419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ] } ] }, { "uniprot_ac": "Q2V452", "gene_name": "CIPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q2V452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V452" } ] } ] }, { "uniprot_ac": "Q38868", "gene_name": "CPK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38868" } ] } ] }, { "uniprot_ac": "Q38869", "gene_name": "CPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38869" } ] } ] }, { "uniprot_ac": "Q38870", "gene_name": "CPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38870" } ] } ] }, { "uniprot_ac": "Q38871", "gene_name": "CPK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38871" } ] } ] }, { "uniprot_ac": "Q38872", "gene_name": "CPK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38872", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38872" } ] } ] }, { "uniprot_ac": "Q38873", "gene_name": "CPK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38873" } ] } ] }, { "uniprot_ac": "Q38997", "gene_name": "KIN10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q38997", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ] } ] }, { "uniprot_ac": "Q39008", "gene_name": "MEKK1", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q39008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39008" } ] } ] }, { "uniprot_ac": "Q39010", "gene_name": "ASK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39010" } ] } ] }, { "uniprot_ac": "Q39011", "gene_name": "ASK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39011" } ] } ] }, { "uniprot_ac": "Q39012", "gene_name": "ASK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39012" } ] } ] }, { "uniprot_ac": "Q39016", "gene_name": "CPK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ] } ] }, { "uniprot_ac": "Q39019", "gene_name": "ASK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ] } ] }, { "uniprot_ac": "Q39021", "gene_name": "MPK1", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39021", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39021" } ] } ] }, { "uniprot_ac": "Q39022", "gene_name": "MPK2", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39022", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39022" } ] } ] }, { "uniprot_ac": "Q39023", "gene_name": "MPK3", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39023" } ] } ] }, { "uniprot_ac": "Q39024", "gene_name": "MPK4", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ] } ] }, { "uniprot_ac": "Q39025", "gene_name": "MPK5", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ] } ] }, { "uniprot_ac": "Q39026", "gene_name": "MPK6", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39026", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39026" } ] } ] }, { "uniprot_ac": "Q39027", "gene_name": "MPK7", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q39027", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39027" } ] } ] }, { "uniprot_ac": "Q39030", "gene_name": "ATPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39030", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39030" } ] } ] }, { "uniprot_ac": "Q39050", "gene_name": "CKL11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ] } ] }, { "uniprot_ac": "Q39086", "gene_name": "SD17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ] } ] }, { "uniprot_ac": "Q39183", "gene_name": "D6PKL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39183" } ] } ] }, { "uniprot_ac": "Q39191", "gene_name": "WAK1", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q39191", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39191" } ] } ] }, { "uniprot_ac": "Q39192", "gene_name": "SRK2D", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39192", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39192" } ] } ] }, { "uniprot_ac": "Q39193", "gene_name": "SRK2I", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39193", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ] } ] }, { "uniprot_ac": "Q39202", "gene_name": "RLK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ] } ] }, { "uniprot_ac": "Q39203", "gene_name": "SD22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] } ] }, { "uniprot_ac": "Q39238", "gene_name": "TOUSLED", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q39238", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39238" } ] } ] }, { "uniprot_ac": "Q3E884", "gene_name": "LECRK110", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ] } ] }, { "uniprot_ac": "Q3E8W4", "gene_name": "ANX2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E8W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8W4" } ] } ] }, { "uniprot_ac": "Q3E9C0", "gene_name": "CPK34", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3E9C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9C0" } ] } ] }, { "uniprot_ac": "Q3E9X6", "gene_name": "CRK21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ] } ] }, { "uniprot_ac": "Q3EBR4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EBR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EBR4" } ] } ] }, { "uniprot_ac": "Q3ECH2", "gene_name": "LRK10L-2.8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ] } ] }, { "uniprot_ac": "Q3EDL4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q3EDL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EDL4" } ] } ] }, { "uniprot_ac": "Q42371", "gene_name": "ERECTA", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ] } ] }, { "uniprot_ac": "Q42396", "gene_name": "CPK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42396", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42396" } ] } ] }, { "uniprot_ac": "Q42438", "gene_name": "CPK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42438", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42438" } ] } ] }, { "uniprot_ac": "Q42479", "gene_name": "CPK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q42479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42479" } ] } ] }, { "uniprot_ac": "Q4V3C8", "gene_name": "PDPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q4V3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3C8" } ] } ] }, { "uniprot_ac": "Q5HZ38", "gene_name": "GRIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5HZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5HZ38" } ] } ] }, { "uniprot_ac": "Q5PP29", "gene_name": "PBL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5PP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ] } ] }, { "uniprot_ac": "Q5XF24", "gene_name": "CKL13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF24" } ] } ] }, { "uniprot_ac": "Q5XF57", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF57" } ] } ] }, { "uniprot_ac": "Q5XF79", "gene_name": "PBL18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q5XF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ] } ] }, { "uniprot_ac": "Q64FQ2", "gene_name": "PID2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q64FQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q64FQ2" } ] } ] }, { "uniprot_ac": "Q66GN2", "gene_name": "LECRK64", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q66GN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q66GN2" } ] } ] }, { "uniprot_ac": "Q683C9", "gene_name": "AUR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q683C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ] } ] }, { "uniprot_ac": "Q6ICW6", "gene_name": "WNK11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6ICW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ICW6" } ] } ] }, { "uniprot_ac": "Q6NKZ9", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NKZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ9" } ] } ] }, { "uniprot_ac": "Q6NLQ6", "gene_name": "CPK32", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6NLQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NLQ6" } ] } ] }, { "uniprot_ac": "Q6NQ87", "gene_name": "CRK22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ] } ] }, { "uniprot_ac": "Q6XAT2", "gene_name": "ERL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q6XAT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6XAT2" } ] } ] }, { "uniprot_ac": "Q7FK82", "gene_name": "LECRK12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q7FK82", "database": 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"L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84JQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JQ4" } ] } ] }, { "uniprot_ac": "Q84M93", "gene_name": "MPK17", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q84M93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ] } ] }, { "uniprot_ac": "Q84M95", "gene_name": "PBL28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84M95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ] } ] }, { "uniprot_ac": "Q84TI6", "gene_name": "CDKE-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q84TI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ] } ] }, { "uniprot_ac": "Q84VQ3", "gene_name": "CIPK26", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q84VQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VQ3" } ] } ] }, { "uniprot_ac": "Q84VX4", "gene_name": "MPS1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q84VX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ] } ] }, { "uniprot_ac": "Q8GUH1", "gene_name": "PUB33", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8GUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ] } ] }, { "uniprot_ac": "Q8GWJ7", "gene_name": "CRK19", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GWJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ7" } ] } ] }, { "uniprot_ac": "Q8GX23", "gene_name": "PERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ] } ] }, { "uniprot_ac": "Q8GXQ3", "gene_name": "WAKL6", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GXQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXQ3" } ] } ] }, { "uniprot_ac": "Q8GXZ3", "gene_name": "PBL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GXZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ] } ] }, { "uniprot_ac": "Q8GY82", "gene_name": "CRK45", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GY82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GY82" } ] } ] }, { "uniprot_ac": "Q8GYA4", "gene_name": "CRK10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYA4" } ] } ] }, { "uniprot_ac": "Q8GYF5", "gene_name": "WAKL21", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ] } ] }, { "uniprot_ac": "Q8GYQ5", "gene_name": "MPK12", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8GYQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYQ5" } ] } ] }, { "uniprot_ac": "Q8GZ99", "gene_name": "HPCA1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8GZ99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GZ99" } ] } ] }, { "uniprot_ac": "Q8H186", "gene_name": "PBL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H186", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H186" } ] } ] }, { "uniprot_ac": "Q8H199", "gene_name": "CRK14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8H199", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H199" } ] } ] }, { "uniprot_ac": "Q8H1D6", "gene_name": "RBK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1D6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1D6" } ] } ] }, { "uniprot_ac": "Q8H1E3", "gene_name": "PBL17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8H1E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1E3" } ] } ] }, { "uniprot_ac": "Q8H1G6", "gene_name": "CARK7", "activity": [ { "ec_number": "2.7.10.-", "activity": "", "evidence": [ { "id": "Q8H1G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H1G6" } ] } ] }, { "uniprot_ac": "Q8L617", "gene_name": "SZE1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8L617", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L617" } ] } ] }, { "uniprot_ac": "Q8L710", "gene_name": "CRK17", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L710", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L710" } ] } ] }, { "uniprot_ac": "Q8L7G3", "gene_name": "CRK7", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8L7G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8L7G3" } ] } ] }, { "uniprot_ac": "Q8LEB6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LEB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LEB6" } ] } ] }, { "uniprot_ac": "Q8LF80", "gene_name": "CDKB2-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LF80" } ] } ] }, { "uniprot_ac": "Q8LG64", "gene_name": "CDKB2-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8LG64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LG64" } ] } ] }, { "uniprot_ac": "Q8LPI7", "gene_name": "CKL4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPI7" } ] } ] }, { "uniprot_ac": "Q8LPJ1", "gene_name": "CKL6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPJ1" } ] } ] }, { "uniprot_ac": "Q8LPS5", "gene_name": "SERK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LPS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPS5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LPS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LPS5" } ] } ] }, { "uniprot_ac": "Q8LST2", "gene_name": "WNK7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8LST2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LST2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8LST2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8LST2" } ] } ] }, { "uniprot_ac": "Q8RWC9", "gene_name": "CIPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWC9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWC9" } ] } ] }, { "uniprot_ac": "Q8RWG1", "gene_name": "ABC1K1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] }, { "ec_number": "2.7.-.-", "activity": "", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWG1" } ] } ] }, { "uniprot_ac": "Q8RWH3", "gene_name": "YAK1", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWH3" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "Q8RWH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWH3" } ] } ] }, { "uniprot_ac": "Q8RWL2", "gene_name": "CPK29", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL2" } ] } ] }, { "uniprot_ac": "Q8RWL6", "gene_name": "STY17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWL6" } ] } ] }, { "uniprot_ac": "Q8RWW0", "gene_name": "ALE2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWW0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWW0" } ] } ] }, { "uniprot_ac": "Q8RWX4", "gene_name": "KOC1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWX4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWX4" } ] } ] }, { "uniprot_ac": "Q8RWZ5", "gene_name": "SD25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RWZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RWZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ5" } ] } ] }, { "uniprot_ac": "Q8RX66", "gene_name": "NEK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX66" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX66" } ] } ] }, { "uniprot_ac": "Q8RX80", "gene_name": "CRK18", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RX80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RX80" } ] } ] }, { "uniprot_ac": "Q8RXC8", "gene_name": "RBK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXC8" } ] } ] }, { "uniprot_ac": "Q8RXE5", "gene_name": "WNK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXE5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXE5" } ] } ] }, { "uniprot_ac": "Q8RXG3", "gene_name": "MKK5", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q8RXG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" } ] } ] }, { "uniprot_ac": "Q8RXT4", "gene_name": "NEK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RXT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXT4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RXT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RXT4" } ] } ] }, { "uniprot_ac": "Q8RY17", "gene_name": "WAKL22", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY17" } ] } ] }, { "uniprot_ac": "Q8RY65", "gene_name": "CIK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8RY65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY65" } ] } ] }, { "uniprot_ac": "Q8RY67", "gene_name": "WAKL14", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8RY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8RY67" } ] } ] }, { "uniprot_ac": "Q8S8S7", "gene_name": "PUB34", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q8S8S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8S7" } ] } ] }, { "uniprot_ac": "Q8S8Y8", "gene_name": "WNK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y8" } ] } ] }, { "uniprot_ac": "Q8S8Y9", "gene_name": "WNK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S8Y9" } ] } ] }, { "uniprot_ac": "Q8S9L6", "gene_name": "CRK29", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8S9L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8S9L6" } ] } ] }, { "uniprot_ac": "Q8VYA3", "gene_name": "WAKL10", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8VYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYA3" } ] } ] }, { "uniprot_ac": "Q8VYG0", "gene_name": "LRK10L-1.3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYG0" } ] } ] }, { "uniprot_ac": "Q8VYK9", "gene_name": "CKL12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYK9" } ] } ] }, { "uniprot_ac": "Q8VYT3", "gene_name": "CIK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ] } ] }, { "uniprot_ac": "Q8VYY5", "gene_name": "NCRK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYY5" } ] } ] }, { "uniprot_ac": "Q8VZD5", "gene_name": "ASK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZD5" } ] } ] }, { "uniprot_ac": "Q8VZF4", "gene_name": "ZRK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ] } ] }, { "uniprot_ac": "Q8VZG8", "gene_name": "MIK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ] } ] }, { "uniprot_ac": "Q8VZJ9", "gene_name": "CRCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8VZJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ9" } ] } ] }, { "uniprot_ac": "Q8W1D5", "gene_name": "CIPK25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W1D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ] } ] }, { "uniprot_ac": "Q8W490", "gene_name": "PEPKR2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W490" } ] } ] }, { "uniprot_ac": "Q8W4G6", "gene_name": "CRK15", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q8W4G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4G6" } ] } ] }, { "uniprot_ac": "Q8W4I7", "gene_name": "CPK13", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4I7" } ] } ] }, { "uniprot_ac": "Q8W4J2", "gene_name": "MPK16", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q8W4J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4J2" } ] } ] }, { "uniprot_ac": "Q8W4L3", "gene_name": "BSK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ] } ] }, { "uniprot_ac": "Q8W4P1", "gene_name": "CDKC-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q8W4P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4P1" } ] } ] }, { "uniprot_ac": "Q8W4S5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q8W4S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8W4S5" } ] } ] }, { "uniprot_ac": "Q93V58", "gene_name": "GRIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93V58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93V58" } ] } ] }, { "uniprot_ac": "Q93VD3", "gene_name": "CIPK23", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ] } ] }, { "uniprot_ac": "Q93VJ2", "gene_name": "IRE1B", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] }, { "ec_number": "3.1.26.-", "activity": "", "evidence": [ { "id": "Q93VJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VJ2" } ] } ] }, { "uniprot_ac": "Q93VK0", "gene_name": "PPCK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93VK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93VK0" } ] } ] }, { "uniprot_ac": "Q93Y08", "gene_name": "ABC1K8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Y08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Y08" } ] } ] }, { "uniprot_ac": "Q93YN1", "gene_name": "CRPK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93YN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93YN1" } ] } ] }, { "uniprot_ac": "Q93Z18", "gene_name": "CKL3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z18" } ] } ] }, { "uniprot_ac": "Q93Z30", "gene_name": "BHP", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93Z30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93Z30" } ] } ] }, { "uniprot_ac": "Q93ZS4", "gene_name": "CIK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q93ZS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q93ZS4" } ] } ] }, { "uniprot_ac": "Q940A2", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940A2" } ] } ] }, { "uniprot_ac": "Q940H6", "gene_name": "SRK2E", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q940H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q940H6" } ] } ] }, { "uniprot_ac": "Q944A7", "gene_name": "BSK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ] } ] }, { "uniprot_ac": "Q944Q0", "gene_name": "WNK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q944Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q944Q0" } ] } ] }, { "uniprot_ac": "Q94A06", "gene_name": "MKK1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q94A06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94A06" } ] } ] }, { "uniprot_ac": "Q94AG2", "gene_name": "SERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ] } ] }, { "uniprot_ac": "Q94C25", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94C25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C25" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94C25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C25" } ] } ] }, { "uniprot_ac": "Q94C40", "gene_name": "CIPK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94C40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C40" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94C40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94C40" } ] } ] }, { "uniprot_ac": "Q94CG0", "gene_name": "CIPK21", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94CG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94CG0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94CG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94CG0" } ] } ] }, { "uniprot_ac": "Q94F62", "gene_name": "BAK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q94F62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ] } ] }, { "uniprot_ac": "Q96285", "gene_name": "LECRK55", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q96285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96285" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q96285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96285" } ] } ] }, { "uniprot_ac": "Q96287", "gene_name": "ASK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q96287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96287" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q96287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96287" } ] } ] }, { "uniprot_ac": "Q9ASQ5", "gene_name": "CRCK3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ5" } ] } ] }, { "uniprot_ac": "Q9ASQ6", "gene_name": "RFK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9ASQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ASQ6" } ] } ] }, { "uniprot_ac": "Q9C562", "gene_name": "CIPK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C562" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C562" } ] } ] }, { "uniprot_ac": "Q9C5C0", "gene_name": "MPK18", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5C0" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9C5C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5C0" } ] } ] }, { "uniprot_ac": "Q9C5H5", "gene_name": "MAPKKK5", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5H5" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9C5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5H5" } ] } ] }, { "uniprot_ac": "Q9C5S2", "gene_name": "IRE1A", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S2" } ] }, { "ec_number": "3.1.26.-", "activity": "", "evidence": [ { "id": "Q9C5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S2" } ] } ] }, { "uniprot_ac": "Q9C5S8", "gene_name": "CRK5", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C5S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S8" } ] } ] }, { "uniprot_ac": "Q9C5S9", "gene_name": "CRK6", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C5S9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C5S9" } ] } ] }, { "uniprot_ac": "Q9C660", "gene_name": "PERK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C660" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C660" } ] } ] }, { "uniprot_ac": "Q9C6K9", "gene_name": "LRK10L-1.1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6K9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6K9" } ] } ] }, { "uniprot_ac": "Q9C6P3", "gene_name": "CPK33", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6P3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C6P3" } ] } ] }, { "uniprot_ac": "Q9C7S5", "gene_name": "PSY1R", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C7S5" } ] } ] }, { "uniprot_ac": "Q9C821", "gene_name": "PERK15", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C821" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C821" } ] } ] }, { "uniprot_ac": "Q9C8M5", "gene_name": "WAG1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C8M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8M5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C8M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8M5" } ] } ] }, { "uniprot_ac": "Q9C902", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C902" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C902", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C902" } ] } ] }, { "uniprot_ac": "Q9C958", "gene_name": "SRK2B", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C958" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C958", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C958" } ] } ] }, { "uniprot_ac": "Q9C9L5", "gene_name": "WAKL9", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9C9L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9L5" } ] } ] }, { "uniprot_ac": "Q9C9M7", "gene_name": "CDKD-2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9C9M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9M7" } ] } ] }, { "uniprot_ac": "Q9C9U2", "gene_name": "CDKD-1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9C9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U2" } ] } ] }, { "uniprot_ac": "Q9C9U4", "gene_name": "MPK15", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U4" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9C9U4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U4" } ] } ] }, { "uniprot_ac": "Q9C9U5", "gene_name": "SIS8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9C9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9C9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C9U5" } ] } ] }, { "uniprot_ac": "Q9CAC3", "gene_name": "CRK43", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAC3" } ] } ] }, { "uniprot_ac": "Q9CAD5", "gene_name": "YDA", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAD5" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9CAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAD5" } ] } ] }, { "uniprot_ac": "Q9CAG1", "gene_name": "CDKG2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAG1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9CAG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAG1" } ] } ] }, { "uniprot_ac": "Q9CAH1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAH1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAH1" } ] } ] }, { "uniprot_ac": "Q9CAI5", "gene_name": "CKL2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAI5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAI5" } ] } ] }, { "uniprot_ac": "Q9CAL2", "gene_name": "CRK3", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9CAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAL2" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9CAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAL2" } ] }, { 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] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9CAV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9CAV6" } ] } ] }, { "uniprot_ac": "Q9FE20", "gene_name": "PBS1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FE20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FE20" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FE20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FE20" } ] } ] }, { "uniprot_ac": "Q9FF29", "gene_name": "PR5K", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF29" } ] } ] }, { "uniprot_ac": "Q9FF31", "gene_name": "LRK10L-2.1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FF31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF31" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FF31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FF31" } ] } ] }, { "uniprot_ac": "Q9FFH8", "gene_name": "CKL7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFH8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFH8" } ] } ] }, { "uniprot_ac": "Q9FFP9", "gene_name": "SRK2H", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFP9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFP9" } ] } ] }, { "uniprot_ac": "Q9FFW5", "gene_name": "PERK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FFW5" } ] } ] }, { "uniprot_ac": "Q9FG33", "gene_name": "LECRKS5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FG33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG33" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FG33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG33" } ] } ] }, { "uniprot_ac": "Q9FG74", "gene_name": "D6PK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FG74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG74" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FG74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FG74" } ] } ] }, { "uniprot_ac": "Q9FGB1", "gene_name": "CBC2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGB1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGB1" } ] } ] }, { "uniprot_ac": "Q9FGC3", "gene_name": "MEE13.6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGC3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FGC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGC3" } ] } ] }, { "uniprot_ac": "Q9FGW5", "gene_name": "CDKG1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FGW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGW5" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9FGW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FGW5" } ] } ] }, { "uniprot_ac": "Q9FHD7", "gene_name": "BSK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHD7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHD7" } ] } ] }, { "uniprot_ac": "Q9FHG4", "gene_name": "LECRKS7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHG4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHG4" } ] } ] }, { "uniprot_ac": "Q9FHT0", "gene_name": "MNJ8.10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHT0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHT0" } ] } ] }, { "uniprot_ac": "Q9FHX3", "gene_name": "LECRKS6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHX3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FHX3" } ] } ] }, { "uniprot_ac": "Q9FIF0", "gene_name": "LECRK22", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF0" } ] } ] }, { "uniprot_ac": "Q9FIF1", "gene_name": "LECRK21", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIF1" } ] } ] }, { "uniprot_ac": "Q9FII5", "gene_name": "TDR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FII5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FII5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FII5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FII5" } ] } ] }, { "uniprot_ac": "Q9FIJ6", "gene_name": "CCR4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FIJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FIJ6" } ] } ] }, { "uniprot_ac": "Q9FIL1", "gene_name": "BSK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FIL1", "database": "UniProtKB", "url": 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"uniprot_ac": "Q9FJ54", "gene_name": "CIPK20", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJ54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ54" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJ54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ54" } ] } ] }, { "uniprot_ac": "Q9FJ55", "gene_name": "CIPK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJ55" } ] } ] }, { "uniprot_ac": "Q9FJI4", "gene_name": "LECRK111", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJI4" } ] } ] }, { "uniprot_ac": "Q9FJV0", "gene_name": "MKK6", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FJV0" } ] } ] }, { "uniprot_ac": "Q9FK63", "gene_name": "CAMRLK", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FK63" } ] } ] }, { "uniprot_ac": "Q9FKG5", "gene_name": "PUB51", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG5" } ] } ] }, { "uniprot_ac": "Q9FKG6", "gene_name": "PUB52", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FKG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKG6" } ] } ] }, { "uniprot_ac": "Q9FKS4", "gene_name": "ATR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKS4" } ] } ] }, { "uniprot_ac": "Q9FKW4", "gene_name": "CPK28", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FKW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ] } ] }, { "uniprot_ac": "Q9FL28", "gene_name": "FLS2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FL28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FL28" } ] } ] }, { "uniprot_ac": "Q9FLV4", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLV4" } ] } ] }, { "uniprot_ac": "Q9FLZ3", "gene_name": "KIN12", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FLZ3" } ] } ] }, { "uniprot_ac": "Q9FM85", "gene_name": "PBL16", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FM85" } ] } ] }, { "uniprot_ac": "Q9FMP5", "gene_name": "CPK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMP5" } ] } ] }, { "uniprot_ac": "Q9FMY3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FMY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FMY3" } ] } ] }, { "uniprot_ac": "Q9FN37", "gene_name": "PSKR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN37" } ] } ] }, { "uniprot_ac": "Q9FN93", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN93" } ] } ] }, { "uniprot_ac": "Q9FN94", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] }, { "ec_number": "2.7.10.1", "activity": "", "evidence": [ { "id": "Q9FN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FN94" } ] } ] }, { "uniprot_ac": "Q9FNE1", "gene_name": "CRK42", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FNE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FNE1" } ] } ] }, { "uniprot_ac": "Q9FPR3", "gene_name": "EDR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FPR3" } ] } ] }, { "uniprot_ac": "Q9FR53", "gene_name": "TOR", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ] } ] }, { "uniprot_ac": "Q9FRS6", "gene_name": "PXL1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FRS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FRS6" } ] } ] }, { "uniprot_ac": "Q9FVS6", "gene_name": "ASK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FVS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FVS6" } ] } ] }, { "uniprot_ac": "Q9FX43", "gene_name": "MKK9", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9FX43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ] } ] }, { "uniprot_ac": "Q9FX86", "gene_name": "CRK8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX86" } ] } ] }, { "uniprot_ac": "Q9FX99", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FX99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FX99" } ] } ] }, { "uniprot_ac": "Q9FXF2", "gene_name": "RKF1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FXF2" } ] } ] }, { "uniprot_ac": "Q9FY48", "gene_name": "KEG", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9FY48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ] } ] }, { "uniprot_ac": "Q9FYC5", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYC5" } ] } ] }, { "uniprot_ac": "Q9FYK0", "gene_name": "TMK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FYK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FYK0" } ] } ] }, { "uniprot_ac": "Q9FZ36", "gene_name": "ANP2", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "Q9FZ36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ36" } ] } ] }, { "uniprot_ac": "Q9FZ59", "gene_name": "PEPR2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZ59" } ] } ] }, { "uniprot_ac": "Q9FZB1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB1" } ] } ] }, { "uniprot_ac": "Q9FZB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9FZB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9FZB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9FZB8" } ] } ] }, { "uniprot_ac": "Q9LDI3", "gene_name": "CIPK24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDI3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDI3" } ] } ] }, { "uniprot_ac": "Q9LDM5", "gene_name": "CRK31", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LDM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDM5" } ] } ] }, { "uniprot_ac": "Q9LDN1", "gene_name": "CRK33", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LDN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN1" } ] } ] }, { "uniprot_ac": "Q9LDN6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDN6" } ] } ] }, { "uniprot_ac": "Q9LDQ1", "gene_name": "PEPKR1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ1" } ] } ] }, { "uniprot_ac": "Q9LDQ3", "gene_name": "CRK34", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LDQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LDQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LDQ3" } ] } ] }, { "uniprot_ac": "Q9LDS6", "gene_name": "CRK32", "activity": [ { "ec_number": "2.7.11.-", "activity": "", 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"https://www.uniprot.org/uniprotkb/Q9LFA2" } ] } ] }, { "uniprot_ac": "Q9LFD0", "gene_name": "BSK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LFD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LFD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFD0" } ] } ] }, { "uniprot_ac": "Q9LFG1", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LFG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFG1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LFG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LFG1" } ] } ] }, { "uniprot_ac": "Q9LFH9", "gene_name": "LECRK81", 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{ "id": "Q9LMN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN7" } ] } ] }, { "uniprot_ac": "Q9LMN8", "gene_name": "WAK3", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMN8" } ] } ] }, { "uniprot_ac": "Q9LMP1", "gene_name": "WAK2", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMP1" } ] } ] }, { "uniprot_ac": "Q9LMT0", "gene_name": "CDKD-3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "Q9LMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT0" } ] } ] }, { "uniprot_ac": "Q9LMT9", "gene_name": "WAKL13", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LMT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LMT9" } ] } ] }, { "uniprot_ac": "Q9LN59", "gene_name": "WAKL11", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LN59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LN59" } ] } ] }, { "uniprot_ac": "Q9LP24", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP24" } ] } ] }, { "uniprot_ac": "Q9LP51", "gene_name": "CIPK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LP51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LP51" } ] } ] }, { "uniprot_ac": "Q9LPQ3", "gene_name": "MKK7", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPQ3" } ] } ] }, { "uniprot_ac": "Q9LPT1", "gene_name": "PRK5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPT1" } ] } ] }, { "uniprot_ac": "Q9LPZ3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ3" } ] } ] }, { "uniprot_ac": "Q9LPZ9", "gene_name": "SD113", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LPZ9" } ] } ] }, { "uniprot_ac": "Q9LQ11", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQ11" } ] } ] }, { "uniprot_ac": "Q9LQM8", "gene_name": "MKK10", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q9LQM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ] } ] }, { "uniprot_ac": "Q9LQQ8", "gene_name": "PBL5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LQQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ8" } ] } ] }, { "uniprot_ac": "Q9LQQ9", "gene_name": "MPK13", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LQQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LQQ9" } ] } ] }, { "uniprot_ac": "Q9LRP3", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRP3" } ] } ] }, { "uniprot_ac": "Q9LRY1", "gene_name": "PBL25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LRY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LRY1" } ] } ] }, { "uniprot_ac": "Q9LS26", "gene_name": "BSK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS26" } ] } ] }, { "uniprot_ac": "Q9LS95", "gene_name": "PERK6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LS95" } ] } ] }, { "uniprot_ac": "Q9LSE1", "gene_name": "CDG1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSE1" } ] } ] }, { "uniprot_ac": "Q9LSF1", "gene_name": "OXI1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSF1" } ] } ] }, { "uniprot_ac": "Q9LSL5", "gene_name": "LECRK92", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSL5" } ] } ] }, { "uniprot_ac": "Q9LSR8", "gene_name": "LECRK19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR8" } ] } ] }, { "uniprot_ac": "Q9LSR9", "gene_name": "LECRK18", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSR9" } ] } ] }, { "uniprot_ac": "Q9LSS0", "gene_name": "LECRK17", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSS0" } ] } ] }, { "uniprot_ac": "Q9LSV3", "gene_name": "WAKL16", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LSV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSV3" } ] } ] }, { "uniprot_ac": "Q9LSX4", "gene_name": "CKL8", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LSX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LSX4" } ] } ] }, { "uniprot_ac": "Q9LT35", "gene_name": "NEK6", "activity": [ { "ec_number": "2.7.11.34", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] }, { "ec_number": "2.7.11.34", "activity": "", "evidence": [ { "id": "Q9LT35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT35" } ] } ] }, { "uniprot_ac": "Q9LT38", "gene_name": "UCNL", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT38" } ] } ] }, { "uniprot_ac": "Q9LT96", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LT96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LT96" } ] } ] }, { "uniprot_ac": "Q9LTC0", "gene_name": "PBL19", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTC0" } ] } ] }, { "uniprot_ac": "Q9LTW5", "gene_name": "AGC1-5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LTW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LTW5" } ] } ] }, { "uniprot_ac": "Q9LU47", "gene_name": "PUB53", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "Q9LU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LU47" } ] } ] }, { "uniprot_ac": "Q9LUC3", "gene_name": "MPK19", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LUC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ] } ] }, { "uniprot_ac": "Q9LUI6", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUI6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUI6" } ] } ] }, { "uniprot_ac": "Q9LUK3", "gene_name": "PAXL", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LUK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LUK3" } ] } ] }, { "uniprot_ac": "Q9LUL2", "gene_name": "WAG2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", 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} ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9LV37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV37" } ] } ] }, { "uniprot_ac": "Q9LV48", "gene_name": "PERK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV48" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LV48" } ] } ] }, { "uniprot_ac": "Q9LVL5", "gene_name": "WNK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9LVL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LVL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9LVL5", "database": "UniProtKB", 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ADP + H(+).", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SJG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG2" } ] } ] }, { "uniprot_ac": "Q9SJG9", "gene_name": "MPK20", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "Q9SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ] } ] }, { "uniprot_ac": "Q9SJM3", "gene_name": "KIPK2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SJM3", "database": "UniProtKB", "url": 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"https://www.uniprot.org/uniprotkb/Q9SSL9" } ] } ] }, { "uniprot_ac": "Q9STF0", "gene_name": "LECRKS3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STF0" } ] } ] }, { "uniprot_ac": "Q9STJ8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9STJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9STJ8" } ] } ] }, { "uniprot_ac": "Q9STK6", "gene_name": "WNK3", 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O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUA3" } ] } ] }, { "uniprot_ac": "Q9SUL7", "gene_name": "CIPK4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SUL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SUL7" } ] } ] }, { "uniprot_ac": "Q9SV05", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV05" } ] } ] }, { "uniprot_ac": "Q9SV69", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV69" } ] } ] }, { "uniprot_ac": "Q9SV83", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SV83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SV83" } ] } ] }, { "uniprot_ac": "Q9SVY5", "gene_name": "ZRK1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SVY5" } ] } ] }, { "uniprot_ac": "Q9SW11", "gene_name": "PUB35", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] }, { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "Q9SW11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW11" } ] } ] }, { "uniprot_ac": "Q9SX31", "gene_name": "PERK9", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX31" } ] } ] }, { "uniprot_ac": "Q9SX57", "gene_name": "CARK10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SX57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SX57" } ] } ] }, { 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ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB5" } ] } ] }, { "uniprot_ac": "Q9SXB8", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SXB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SXB8" } ] } ] }, { "uniprot_ac": "Q9SY89", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SY89", "database": "UniProtKB", "url": 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"id": "Q9SY95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SY95" } ] } ] }, { "uniprot_ac": "Q9SYA0", "gene_name": "", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYA0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYA0" } ] } ] }, { "uniprot_ac": "Q9SYB9", "gene_name": "UNC", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "Q9SYB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYB9" } ] } ] }, { 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"AT3G11990.1", "url": "https://www.ensemblgenomes.org/id/AT3G11990.1" }, { "database": "Ensembl Peptide", "id": "AT3G11990.1", "url": "https://www.ensemblgenomes.org/id/AT3G11990.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM2", "url": "https://www.uniprot.org/uniprotkb/Q9LHM2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHM2", "url": "https://www.uniprot.org/uniprotkb/Q9LHM2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G11990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular 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Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LHQ2", "url": "https://www.uniprot.org/uniprotkb/Q9LHQ2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LHQ2", "url": "https://www.uniprot.org/uniprotkb/Q9LHQ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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"https://www.uniprot.org/uniprotkb/Q9LI63/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LI63", "url": "https://www.uniprot.org/uniprotkb/Q9LI63" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LI63", "locus": {} } ], "crossref": [ { "id": "AT3G30370", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G30370", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822738", "url": "https://www.ncbi.nlm.nih.gov/gene/822738", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G30370", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30370", "database": "KEGG 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"tr|Q9LI63-1|Q9LI63_ARATH Isoform 1 of MuDR family transposase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LI63-1" }, "isoforms": [ { "isoform_ac": "Q9LI63-1", "url": "https://www.uniprot.org/uniprotkb/Q9LI63/entry#Q9LI63-1", "sequence": { "sequence": "MAMMMHDPTNVGDVDPEAEDRDEFHMEEMLNEWTDEPQIHHDVYPESDREENDEDEARFQTHLQRGDGHLYEKQTFFSGVAFKEAVVDYALRTGCNLKQYRYDSDKIGFKCVGCDGKEDGVKCFWQVYAAILPSDSMWRIRKFINKHSCIPNGECEMFEMINKHSCIPQSNTTLFINDS", "length": 179, "header": "tr|Q9LI63-1|Q9LI63_ARATH Isoform 1 of MuDR family transposase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LI63-1" }, "locus": { "chromosome": "3", "start_pos": 11965180, "end_pos": 11965719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30370.1", "url": "https://www.ensemblgenomes.org/id/AT3G30370.1" }, { "database": "Ensembl Peptide", "id": "AT3G30370.1", "url": "https://www.ensemblgenomes.org/id/AT3G30370.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": 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C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LI63", "url": "https://www.uniprot.org/uniprotkb/Q9LI63" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LI63", "url": "https://www.uniprot.org/uniprotkb/Q9LI63" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G30370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30370", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LI63", "url": "https://www.uniprot.org/uniprotkb/Q9LI63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189647", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189647", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G30280", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G30280", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LI71", "url": "https://www.uniprot.org/uniprotkb/Q9LI71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LI71-1", "url": "https://www.uniprot.org/uniprotkb/Q9LI71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METMKVETIAKEIIKPSSTTPNDLQTLQLSIYDHILPPVYTVAFLFYTKDDLISPEQSSHKLKTSLAETLTKFYPLAGRIKGVTIDCNDEGAVFVDARVNNYPLSDFLRSPDFKTLQQLLPLDVIDDPYEAATTWPLLLVKATYFPCGGMAIGLCITHKIADATSISTFIQSWAAMARGEAGDIVADPVFAAANFYPPANELFKFPVDENANKISQITKRFVFSASKLEELRTKAASEDFVGRPKRVESVTALLWKAFVAAASSNTNACDMKVLIQPSNLRPKIPSLLAESLIGNIMFSSVVLGISQQEEIKIEKAVRDLRKQGDDLQNVIKEEGGSSSAMIGSKLANLMLTNYSKLSYETHEPYTVSSWCKLPLYEASFGWGSPVWIAGNVAPMLENVTMLIDSKDGQGIEAFVTLPEENMLSLEQNTELLAFASVNPSVLV", "length": 443, "header": "tr|Q9LI71-1|Q9LI71_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LI71-1" }, "isoforms": [ { "isoform_ac": "Q9LI71-1", "url": "https://www.uniprot.org/uniprotkb/Q9LI71/entry#Q9LI71-1", "sequence": { "sequence": 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{ "database": "Ensembl Peptide", "id": "AT3G25597.1", "url": "https://www.ensemblgenomes.org/id/AT3G25597.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, 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"Protein", "Organism-specific" ] }, { "id": "822146", "url": "https://www.ncbi.nlm.nih.gov/gene/822146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G25590", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G25590", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSCSDEM", "url": "https://omabrowser.org/oma/group/CSCSDEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34197", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34197", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34197:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34197:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_189187", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189187", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G25590", "url": 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], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LI95", "url": "https://www.uniprot.org/uniprotkb/Q9LI95" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LI95", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LI95" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LI95", "url": "https://www.uniprot.org/uniprotkb/Q9LI95" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LI95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LI95" }, { "id": "PF07059", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07059" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein ENHANCED DISEASE RESISTANCE 2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 252, "end_pos": 493, "start_aa": "Trp", 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"IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G16880", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G16880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WATAFYK", "url": "https://omabrowser.org/oma/group/WATAFYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LIB4", "url": "https://www.orthodb.org/?gene=Q9LIB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LIB4", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LIB4", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_188313", "url": 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Putative F-box/kelch-repeat protein At3g16880 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIB4-1" }, "isoforms": [ { "isoform_ac": "Q9LIB4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIB4/entry#Q9LIB4-1", "sequence": { "sequence": "MTKMSKLPNDLLEEILSRSPLYSMRAIRLTCKKWNTLAKEESFTKKQLVQTKAAKEFMVIMMMDSKFCLMNINLNKEEDVEPSIKCNGKIINPIGMCRVYHCGGLVCITKSFSNTRDVVWNPYLGQTRWIKPRSHHAYIYAIGYETKKSCRSYKILSSEHNYINIDDERVDYEIYELDSNSWRALDVNSNWATAFYKMDVSVKGNSYTYTDYRGDFLISFDFTTERFGPTLPLPFHSRCGDIVALSSVREEKLAVLLHRCNISRMEIWITNKIEPNNVSWGKLFLTVDMKPLIIDDGIFFIDEEKKVVVVFDKDKEMRNRITAYIIGENGYFRKVDLGDSESFPVRCSYVPSSVEIKQLAKGKSN", "length": 365, "header": "sp|Q9LIB4-1|FBK57_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At3g16880 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIB4-1" }, "locus": { "chromosome": "3", "start_pos": 5766733, "end_pos": 5767830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G16880.1", "url": 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II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LIB4", "url": "https://www.uniprot.org/uniprotkb/Q9LIB4" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIB4", "url": "https://www.uniprot.org/uniprotkb/Q9LIB4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G16880", "name": "", "url": 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"https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 1, "end_pos": 47, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 }, { "start_pos": 277, "end_pos": 279 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"MEIDHELLIPHLMMEEPTVKEEDIIHNQTSTKEMYDAEKPRCLLSHPADSPHNLSVGCDPKLPLGCFTCGGKTTVRRQDYLHFHCTTCDVKFHEGCQTRPRRITHPYHLQHPLTLFYRNPETGIISNIIPYSSPYESDTSDPESNSSGEGKSELVDIIPSKSDIIFDKCTWCGKDFKGDVWFYRCLICGFCLDLSCALTLPPLTIANPKSHHHSLLFLPRPLLVPCDACGLVNALEPSYACFQCNYMIHQNCIDLPRVIKITRHHHRLSFTPFGPPLISLCRVCYKEVDIKYGQYSCQHEDCSYVAHSKCATHKNVWDGTELEWETEESDENEDIAPFKVVGEDLIKHFCHKHHLRLKKHDGFREAEKQCRACVFPIVSHQFYHCKICNYSLHEVCAGLPRKLDHALHKHRLVLDPSPLHDYRNMHCSTCSRAFTGFRYKCSEKICQDRTNLNIDVSCILVPEYFTHKSHEHPVVISTSYSDTDEILCNACQGTCWQPHIKCTKCDFAMCYTCATIPNEVHYKFDEHPLTLCHGESRKSKYWCEVCEKKLDTTKWFYTCNKCCTTVHRECLFGSTVYMQPGSRFNYVYGTVEVFRNSHNSRLVCRKCFHSCTDSVYFRGYKSQQTFISYKGYEQHEMAICSLTCLKLEMLFW", "length": 652, "header": "tr|Q9LIC4-1|Q9LIC4_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIC4-1" }, "isoforms": [ { "isoform_ac": "Q9LIC4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4/entry#Q9LIC4-1", "sequence": { "sequence": "MEIDHELLIPHLMMEEPTVKEEDIIHNQTSTKEMYDAEKPRCLLSHPADSPHNLSVGCDPKLPLGCFTCGGKTTVRRQDYLHFHCTTCDVKFHEGCQTRPRRITHPYHLQHPLTLFYRNPETGIISNIIPYSSPYESDTSDPESNSSGEGKSELVDIIPSKSDIIFDKCTWCGKDFKGDVWFYRCLICGFCLDLSCALTLPPLTIANPKSHHHSLLFLPRPLLVPCDACGLVNALEPSYACFQCNYMIHQNCIDLPRVIKITRHHHRLSFTPFGPPLISLCRVCYKEVDIKYGQYSCQHEDCSYVAHSKCATHKNVWDGTELEWETEESDENEDIAPFKVVGEDLIKHFCHKHHLRLKKHDGFREAEKQCRACVFPIVSHQFYHCKICNYSLHEVCAGLPRKLDHALHKHRLVLDPSPLHDYRNMHCSTCSRAFTGFRYKCSEKICQDRTNLNIDVSCILVPEYFTHKSHEHPVVISTSYSDTDEILCNACQGTCWQPHIKCTKCDFAMCYTCATIPNEVHYKFDEHPLTLCHGESRKSKYWCEVCEKKLDTTKWFYTCNKCCTTVHRECLFGSTVYMQPGSRFNYVYGTVEVFRNSHNSRLVCRKCFHSCTDSVYFRGYKSQQTFISYKGYEQHEMAICSLTCLKLEMLFW", "length": 652, "header": "tr|Q9LIC4-1|Q9LIC4_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIC4-1" }, "locus": { "chromosome": "3", "start_pos": 4517496, "end_pos": 4519627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13760.1", "url": "https://www.ensemblgenomes.org/id/AT3G13760.1" }, { "database": "Ensembl Peptide", "id": "AT3G13760.1", "url": "https://www.ensemblgenomes.org/id/AT3G13760.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LIC4", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIC4", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G13760", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13760", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LIC4", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9LIC4", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LIC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIC4" }, { "id": "SM00249", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger PHD-type", "eco_id": "ECO_0000259", "start_pos": 225, "end_pos": 285, "start_aa": "Pro", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 27, "end_pos": 29 }, { "start_pos": 389, "end_pos": 391 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LIC9-1", "uniprot_ac": "Q9LIC9", "uniprot_id": "Q9LIC9_ARATH", "mass": { "chemical_mass": 83210.0, "monoisotopic_mass": 83210.0 }, "refseq": { "ac": "NP_001327819", "name": "kinase with adenine nucleotide alpha hydrolases-like domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327819" }, "gene_names": [], "protein_names": [ { "name": "Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein", "type": "synonym", "evidence": [ { "id": "Q9LIC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9/entry#names_and_taxonomy" } ] }, { "name": "kinase with adenine nucleotide alpha hydrolases-like domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001327819", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327819" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LIC9", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9", "locus": {} } ], "crossref": [ { "id": "cd00293", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00293", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820578", "url": "https://www.ncbi.nlm.nih.gov/gene/820578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G13690", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCENEVY", "url": "https://omabrowser.org/oma/group/YCENEVY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LIC9", "url": "https://www.orthodb.org/?gene=Q9LIC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47989", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47989", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47989:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47989:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001327819", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327819", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13690", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13690", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LIC9", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIC9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRLQKRGKQEKPVVSDGAQKVIVAVKASREIPKTALIWALTHVVQPGDCITLIVVVPSHNSGRKLWGFTKSFPMFAGDCASGHRKSHSEALPEIKSDLTDTCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAESKKAQANWVVMDKHLKQEEKRCMDELQCNIVVMKRSQAKVLRLNLVGSPKKDAGKECPLPSGPEAASEKHSKNTKGLLDADRGLPVTPTSSPELGTPFTSTEAGTSSVSSSDLGTSPFFTLGMNGYMKKDGALVIKENDGLDDSGSETESENQSLASTSMRFQPWISEYIGTHRHSSQEAEESLLWKNDDRAQISTTKALLEKFSKLDVEVGLSSSRRMDLEFSGNVRDAISLSRSAPPGPPPLCSICQHKAPVFGKPPRLFTYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVVAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDSRRLLVYEYICNGSLDSHLYGRQKETLEWPARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDNEPLVGDFGLARWQPDGEMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAIDITRPKGQQCLTEWARPLLEEYAIDELIDPRLGNRFVESEVICMLHAASLCIRRDPHLRPRMSQVLRILEGDMIMDGNYASTPGSEAGNRSGRFWADHYSGQLTNDGSDRFSERLSVETPRLALRERERSQRFELNHNKQY", "length": 753, "header": "tr|Q9LIC9-1|Q9LIC9_ARATH Isoform 1 of Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIC9-1" }, "isoforms": [ { "isoform_ac": "Q9LIC9-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIC9/entry#Q9LIC9-1", "sequence": { "sequence": "MSRLQKRGKQEKPVVSDGAQKVIVAVKASREIPKTALIWALTHVVQPGDCITLIVVVPSHNSGRKLWGFTKSFPMFAGDCASGHRKSHSEALPEIKSDLTDTCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAESKKAQANWVVMDKHLKQEEKRCMDELQCNIVVMKRSQAKVLRLNLVGSPKKDAGKECPLPSGPEAASEKHSKNTKGLLDADRGLPVTPTSSPELGTPFTSTEAGTSSVSSSDLGTSPFFTLGMNGYMKKDGALVIKENDGLDDSGSETESENQSLASTSMRFQPWISEYIGTHRHSSQEAEESLLWKNDDRAQISTTKALLEKFSKLDVEVGLSSSRRMDLEFSGNVRDAISLSRSAPPGPPPLCSICQHKAPVFGKPPRLFTYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVVAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDSRRLLVYEYICNGSLDSHLYGRQKETLEWPARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDNEPLVGDFGLARWQPDGEMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAIDITRPKGQQCLTEWARPLLEEYAIDELIDPRLGNRFVESEVICMLHAASLCIRRDPHLRPRMSQVLRILEGDMIMDGNYASTPGSEAGNRSGRFWADHYSGQLTNDGSDRFSERLSVETPRLALRERERSQRFELNHNKQY", "length": 753, "header": "tr|Q9LIC9-1|Q9LIC9_ARATH Isoform 1 of Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIC9-1" }, "locus": { "chromosome": "3", "start_pos": 4486169, "end_pos": 4490420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13690.3", "url": "https://www.ensemblgenomes.org/id/AT3G13690.3" }, { "database": "Ensembl Peptide", "id": "AT3G13690.3", "url": "https://www.ensemblgenomes.org/id/AT3G13690.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 226, "start_aa": "Thr", "end_pos": 226, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr226", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", 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L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, 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Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LIF6", "url": "https://www.uniprot.org/uniprotkb/Q9LIF6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LIF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIF6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIF6", "url": "https://www.uniprot.org/uniprotkb/Q9LIF6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G21400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G21400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LIF6", "url": "https://www.uniprot.org/uniprotkb/Q9LIF6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9LIF6", "url": "https://www.uniprot.org/uniprotkb/Q9LIF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" 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"MPLEEILSRLPLKSTRAVRSTCKKWDSLFKNRSFISKAAAAREGESQMVVLMDHNLHLVSFFFGSDTSVEIKGKRICLNDDSDSEQVKISQVFHCEGLLLCILKDDNFSLVVWNPYWGQTRWIKPRCSFEIPQGCDMYRYAIGYDNKRRNHKILRFIDYEFHYPRDNVVLWYEIYDFESDLWTTLDVTTPHWLINCGNRGVTLKGNTYWCAKKRNSDLFLNADHIICFDFTSERFGPLLLLPFSDLDGVVTLACVREEKLAALVCHEDVVEVWITIKIEANEVLWSKFLTVNVDLGDEIPSSLTYGSFFIDEEKKVAMIFDKTLDRGDTVHIMGEAGYGGQVDLGEPVNKRRCPLVCSYVPSLVQIKKPAGFQRKQQSKLEKRQYVRNISKLRALKTQSSWTLSMSLECHQQ", "length": 412, "header": "sp|Q9LIK3-1|FB178_ARATH Isoform 1 of Putative F-box protein At3g22940 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIK3-1" }, "isoforms": [ { "isoform_ac": "Q9LIK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIK3/entry#Q9LIK3-1", "sequence": { "sequence": 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SV=1 CANONICAL=Q9LIL1-1" }, "isoforms": [ { "isoform_ac": "Q9LIL1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIL1/entry#Q9LIL1-1", "sequence": { "sequence": "MTLTISDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKIDEEESQMVALMDYNLCLMSKSFNGGDPSTEIKGKLTCFDEQVKVSMLFHCEGLLLCILKDDNTKVVVWNPYLGQRRFIQVRFSHIPGGWDQFSYALGYYKNNNMMKSFKLLRFFDYFYTSNDFVFYEIYDFDSGLWKTLDVTPYWRIRFFDDIGVSLKGNTYWCAKERKPEWNADPFIIVDHIICFDFTSERFGPLVPLPFRAMKESLVTLSCVREEKLAALFCRDVVVEVWITTTIEFDKVSWSKFLTFGVRDCPMIYSCTGSFFIDEVNKVAVIFGQPLKRDKVFIIGEAGQVRDVDLGEPAHQDSWLYVCPYVPSLVKIKQPPGCKRRRQSSSENRRYKRNMMRLVELEKYHIAMEPKRGDKTI", "length": 413, "header": "sp|Q9LIL1-1|FBK66_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At3g22870 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIL1-1" }, "locus": { "chromosome": "3", "start_pos": 8096230, "end_pos": 8097471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G22870.1", "url": "https://www.ensemblgenomes.org/id/AT3G22870.1" }, { "database": "Ensembl Peptide", "id": "AT3G22870.1", "url": "https://www.ensemblgenomes.org/id/AT3G22870.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LIL1", "url": "https://www.uniprot.org/uniprotkb/Q9LIL1" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIL1", "url": "https://www.uniprot.org/uniprotkb/Q9LIL1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G22870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G22870", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LIL1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 413, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9LIL1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9LIL1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LIL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIL1" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 2, "end_pos": 53, "start_aa": "Thr", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LIL3-1", "uniprot_ac": "Q9LIL3", "uniprot_id": "Q9LIL3_ARATH", "mass": { "chemical_mass": 27107.0, "monoisotopic_mass": 27107.0 }, "refseq": { "ac": "NP_188925", "name": "aluminum induced protein with YGL and LRDR motifs", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188925" }, "gene_names": [], "protein_names": [ { "name": "Aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "Q9LIL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3/entry#names_and_taxonomy" } ] }, { "name": "aluminum induced protein with YGL and LRDR motifs", "type": "synonym", "evidence": [ { "id": "NP_188925", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188925" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LIL3", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3", "locus": {} } ], "crossref": [ { "id": "cd01910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "821857", "url": "https://www.ncbi.nlm.nih.gov/gene/821857", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G22850", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G22850", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHVENVA", "url": "https://omabrowser.org/oma/group/GHVENVA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LIL3", "url": "https://www.orthodb.org/?gene=Q9LIL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45952:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45952:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188925", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188925", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G22850", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G22850", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LIL3", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIL3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAIFDKNVAKTPEALQGQEGGSVCALKDRFLPNHFSSVYPGAVTINLGSSGFIACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRDRGPYSAEQVVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGTDAEGHLVVSDDVETVKKGCGKSFAPFPKGCFFTSSGGLRSYEHPSNELKPVPRVDSSGEVCGVTFKVDSEAKKEAMPRVGSVQNWSKQI", "length": 248, "header": "tr|Q9LIL3-1|Q9LIL3_ARATH Isoform 1 of Aluminum induced protein with YGL and LRDR motifs OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIL3-1" }, "isoforms": [ { "isoform_ac": "Q9LIL3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIL3/entry#Q9LIL3-1", "sequence": { "sequence": "MLAIFDKNVAKTPEALQGQEGGSVCALKDRFLPNHFSSVYPGAVTINLGSSGFIACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRDRGPYSAEQVVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGTDAEGHLVVSDDVETVKKGCGKSFAPFPKGCFFTSSGGLRSYEHPSNELKPVPRVDSSGEVCGVTFKVDSEAKKEAMPRVGSVQNWSKQI", "length": 248, "header": "tr|Q9LIL3-1|Q9LIL3_ARATH Isoform 1 of Aluminum induced protein with YGL and LRDR motifs OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIL3-1" }, "locus": { "chromosome": "3", "start_pos": 8088810, "end_pos": 8090470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G22850.1", "url": "https://www.ensemblgenomes.org/id/AT3G22850.1" }, { "database": "Ensembl Peptide", "id": "AT3G22850.1", "url": "https://www.ensemblgenomes.org/id/AT3G22850.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 204, "end_pos": 204, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIL3" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser204" }, { "start_pos": 215, "end_pos": 215, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIL3" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": 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"30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser215" }, { "start_pos": 216, "end_pos": 216, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIL3" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser216" }, { "start_pos": 223, "end_pos": 223, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIL3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr223" }, { "start_pos": 23, "end_pos": 23, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIL3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIL3" }, { "database": "PubMed", "id": "22631563", "url": 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"MDSTSNDHQELEQFEAIDDLLEDFWFFDNLLDRRSRILRYCHSDPYPFTSSSSSTCPKPELPKIGDSDSEIKLLEASTGGDFVPPPCIEKKEGGGEPEKINKVMRRQFSEKTRVQERRTYLQKKEPVVREKGIKEGSRKKNRTRISCSNNNSVQSCSMGGSLQRTQTLPSYLGREDDVNEFQDQEIDDSRMGFLIREAIANSSSSSSSGFTPTKQNIPKVSCIPRHRPPRNSRSEDAIQELVVKSQKSPNRKTLRKTLSSIETKDIQMLKDFHIETEKKQEEDEEKQRKVPCTTTGKNRSTAVVGQPIPVWVPKDSRKDMKAQIKFWARTVASNVRQEC", "length": 339, "header": "tr|Q9LIM3-1|Q9LIM3_ARATH Isoform 1 of Serine/arginine repetitive matrix protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIM3-1" }, "isoforms": [ { "isoform_ac": "Q9LIM3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIM3/entry#Q9LIM3-1", "sequence": { "sequence": "MDSTSNDHQELEQFEAIDDLLEDFWFFDNLLDRRSRILRYCHSDPYPFTSSSSSTCPKPELPKIGDSDSEIKLLEASTGGDFVPPPCIEKKEGGGEPEKINKVMRRQFSEKTRVQERRTYLQKKEPVVREKGIKEGSRKKNRTRISCSNNNSVQSCSMGGSLQRTQTLPSYLGREDDVNEFQDQEIDDSRMGFLIREAIANSSSSSSSGFTPTKQNIPKVSCIPRHRPPRNSRSEDAIQELVVKSQKSPNRKTLRKTLSSIETKDIQMLKDFHIETEKKQEEDEEKQRKVPCTTTGKNRSTAVVGQPIPVWVPKDSRKDMKAQIKFWARTVASNVRQEC", "length": 339, "header": "tr|Q9LIM3-1|Q9LIM3_ARATH Isoform 1 of Serine/arginine repetitive matrix protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LIM3-1" }, "locus": { "chromosome": "3", "start_pos": 5085992, "end_pos": 5087496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15115.1", "url": "https://www.ensemblgenomes.org/id/AT3G15115.1" }, { "database": "Ensembl Peptide", "id": "AT3G15115.1", "url": "https://www.ensemblgenomes.org/id/AT3G15115.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 109, "end_pos": 109, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser109" }, { "start_pos": 167, "end_pos": 167, 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C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LIM3", "url": "https://www.uniprot.org/uniprotkb/Q9LIM3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LIM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIM3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIM3", "url": "https://www.uniprot.org/uniprotkb/Q9LIM3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G15115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15115", "resource": "KEGG Pathway" } 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"MAVTDYFAGEIATELLKQLFLISARAGRYKNTADNLSTLIENIQPTIKEIQYSGVELPAHRQAQIRILFESLEKGKKLMDKFLTCNRWNMIRQLYLMKKMEKLEKTLSDFFRASILTHILADLHLLRANSDERSHEHVTSTKGCDYDGLGSIQYQHIQPNLDMDMRVTILEAEFRTFSNNVINNMLAMKRAQDVLLRANGFDPETLLPMMSPPAASMNPPA", "length": 221, "header": "tr|Q9LIM8-1|Q9LIM8_ARATH Isoform 1 of Powdery mildew resistance protein, RPW8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIM8-1" }, "locus": { "chromosome": "3", "start_pos": 9685932, "end_pos": 9687642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26470.1", "url": "https://www.ensemblgenomes.org/id/AT3G26470.1" }, { "database": "Ensembl Peptide", "id": "AT3G26470.1", "url": "https://www.ensemblgenomes.org/id/AT3G26470.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G23960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LIR1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIR1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSRQLHNVSEDRETLSRRNKRSKTSLNGHIPIDLLIEIFLKLPVKSIATCRSVSKFWTYVLGRQDFTELFLTKSSSRPQLLFACANDNGYFFFSSNQPQNLDENSSPIAAYPLTHVPKSRDLGPPINGLVSLRGERILKGRIRPVDVSIIYNPSTGESLTLPKTNMTRKKIYTVTSFLGYDPIEKQYKVLSMNMSYEKHPKCEGYQVLTLGTGKLSWRMIKCCLNYQHPLKNSEICINGVLYYLAMVNGSSWPTRAVVCFDIRSEMFNFMEVYRELSYTTTLINYNNGKLGMLMGQEAHKTISGICRSFELWVLEDTVKHEWSKHVYLLPPLWKDAVANTRLYFAGMIGTSEIVLFRPDEPLCVFYYNIDRNTIKRVGIRGLEAFKYFRIFLNHVENVKLF", "length": 402, "header": "sp|Q9LIR1-1|FB182_ARATH Isoform 1 of Putative F-box protein At3g23960 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIR1-1" }, "isoforms": [ { "isoform_ac": "Q9LIR1-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1/entry#Q9LIR1-1", "sequence": { "sequence": "MRSRQLHNVSEDRETLSRRNKRSKTSLNGHIPIDLLIEIFLKLPVKSIATCRSVSKFWTYVLGRQDFTELFLTKSSSRPQLLFACANDNGYFFFSSNQPQNLDENSSPIAAYPLTHVPKSRDLGPPINGLVSLRGERILKGRIRPVDVSIIYNPSTGESLTLPKTNMTRKKIYTVTSFLGYDPIEKQYKVLSMNMSYEKHPKCEGYQVLTLGTGKLSWRMIKCCLNYQHPLKNSEICINGVLYYLAMVNGSSWPTRAVVCFDIRSEMFNFMEVYRELSYTTTLINYNNGKLGMLMGQEAHKTISGICRSFELWVLEDTVKHEWSKHVYLLPPLWKDAVANTRLYFAGMIGTSEIVLFRPDEPLCVFYYNIDRNTIKRVGIRGLEAFKYFRIFLNHVENVKLF", "length": 402, "header": "sp|Q9LIR1-1|FB182_ARATH Isoform 1 of Putative F-box protein At3g23960 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIR1-1" }, "locus": { "chromosome": "3", "start_pos": 8657736, "end_pos": 8658980, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23960.1", "url": "https://www.ensemblgenomes.org/id/AT3G23960.1" }, { "database": "Ensembl Peptide", "id": "AT3G23960.1", "url": "https://www.ensemblgenomes.org/id/AT3G23960.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 149, "end_pos": 149, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIR1" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser149" }, { "start_pos": 152, "end_pos": 152, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LIR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIR1" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr152" }, { "start_pos": 159, "end_pos": 159, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", 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Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LIR1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9LIR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LIR1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIR1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G23960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G23960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LIR1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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"Q9LIR3", "url": "https://alphafold.ebi.ac.uk/entry/Q9LIR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G23950", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G23950", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22157", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22157", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "821978", "url": "https://www.ncbi.nlm.nih.gov/gene/821978", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF24750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LIR3", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LIR3", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_189037", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189037", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G23950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G23950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LIR3", "url": "https://www.uniprot.org/uniprotkb/Q9LIR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIR3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIPPELTFEVLVRLPLKSLARFRSMCKEWKLVIDSEFFRDCFMSHNSSSVSWSIIQTRPHKLTLEIVGHHGCKTWGLTRSPGSLVSFFAETTIRKLQVLACTDGLVLLYVESCVGTPMYYVGNPLFQEWFRIPLRPKYTSQNVEKLRNHERFSDSGLVTKMQSGIVVSYKVVWLIAHTFAQVDFAIYSSNTGEWEIKNVTCLHSAYWFSHHKSIALNGILHWLSNLTGSFLAYDFYGGHHDACSIIYFPDNGKDYELPRFRRTITTSEGSIVYFNEFGGNANRKVRVWRLVKYTDGPEAWQLFWEASLASVTKLGIDYFPVVMHPLKSEIIYLWSRNKKGMVLFNLRTHVFSLHKESEDERKCMDGCTLSFNWCNEYMETVHRYFSPSFQGGPNLLLASQYVLPRWLSRLPRPQPSN", "length": 418, "header": "sp|Q9LIR3-1|FB181_ARATH Isoform 1 of Putative F-box protein At3g23950 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIR3-1" }, "isoforms": [ { "isoform_ac": "Q9LIR3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR3/entry#Q9LIR3-1", "sequence": { "sequence": "MNIPPELTFEVLVRLPLKSLARFRSMCKEWKLVIDSEFFRDCFMSHNSSSVSWSIIQTRPHKLTLEIVGHHGCKTWGLTRSPGSLVSFFAETTIRKLQVLACTDGLVLLYVESCVGTPMYYVGNPLFQEWFRIPLRPKYTSQNVEKLRNHERFSDSGLVTKMQSGIVVSYKVVWLIAHTFAQVDFAIYSSNTGEWEIKNVTCLHSAYWFSHHKSIALNGILHWLSNLTGSFLAYDFYGGHHDACSIIYFPDNGKDYELPRFRRTITTSEGSIVYFNEFGGNANRKVRVWRLVKYTDGPEAWQLFWEASLASVTKLGIDYFPVVMHPLKSEIIYLWSRNKKGMVLFNLRTHVFSLHKESEDERKCMDGCTLSFNWCNEYMETVHRYFSPSFQGGPNLLLASQYVLPRWLSRLPRPQPSN", "length": 418, "header": "sp|Q9LIR3-1|FB181_ARATH Isoform 1 of Putative F-box protein At3g23950 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LIR3-1" }, "locus": { "chromosome": "3", "start_pos": 8652908, "end_pos": 8654164, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23950.1", "url": "https://www.ensemblgenomes.org/id/AT3G23950.1" }, { "database": "Ensembl Peptide", "id": "AT3G23950.1", "url": "https://www.ensemblgenomes.org/id/AT3G23950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], 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"https://www.ncbi.nlm.nih.gov/protein/NP_189030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G23880", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G23880", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LIR8", "url": "https://www.uniprot.org/uniprotkb/Q9LIR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LIR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDETTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTDFVRPLWISDGLVVLLEFRSGLALYNCSNGRFHYPVSNSISGCRDAKVYLKTMVSPNDL", "length": 364, "header": "sp|Q9LIR8-1|FBK67_ARATH Isoform 1 of F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LIR8-1" }, "isoforms": [ { "isoform_ac": "Q9LIR8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LIR8/entry#Q9LIR8-1", "sequence": { "sequence": "MDETTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTDFVRPLWISDGLVVLLEFRSGLALYNCSNGRFHYPVSNSISGCRDAKVYLKTMVSPNDL", "length": 364, "header": "sp|Q9LIR8-1|FBK67_ARATH Isoform 1 of F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LIR8-1" }, "locus": { "chromosome": "3", "start_pos": 8621986, "end_pos": 8623214, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23880.1", "url": "https://www.ensemblgenomes.org/id/AT3G23880.1" }, { 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Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9LIR8", "url": "https://www.uniprot.org/uniprotkb/Q9LIR8" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LIR8", "url": "https://www.uniprot.org/uniprotkb/Q9LIR8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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CANONICAL=Q9LJ39-1" }, "locus": { "chromosome": "3", "start_pos": 9022281, "end_pos": 9023453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24700.2", "url": "https://www.ensemblgenomes.org/id/AT3G24700.2" }, { "database": "Ensembl Peptide", "id": "AT3G24700.2", "url": "https://www.ensemblgenomes.org/id/AT3G24700.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. 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J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ40", "url": "https://www.uniprot.org/uniprotkb/Q9LJ40" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ40", "url": "https://www.uniprot.org/uniprotkb/Q9LJ40" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24690", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24690", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ40", "url": "https://www.uniprot.org/uniprotkb/Q9LJ40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEGKLRSGVYRSFIMCDDPRDVVECGAIKKQSKSRSSSTKQRCEEHLSKVKERSEMAVAPRKSSSTEDVPPSSLQLLRVSKGIQKLNVAIESLSKGFSFEAVSRPEDIAKDLLRGALDLEESLAMLSSIQEDDSKRKPMIRNDGRSDLRFQRSMSDRFGERIEKRMMVQENVASKDCYEELRKVIRESFLRQNLVSQTTTIETKKRVVRSDFASSSGAVSSSTSSSQSSMVSGSTKSSASSDVPQRAPSLIARLMGLDVSTQEPRKSSVNHIDKPDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVKPEPGSKQPVVPKKPRMQGEVHPRMINQRKDHQANGSNKMKLPLRMTKKDKEPKEMVPKVEENEGKVIKLMSPSNAKVLTRDRKPLETNKKLVVKKDDIAEGKDRHRALKPPSNPVSQKISNNSSDVSRNKSRRSSRLSSSSSSGSREKKSGEASRPNAKKKLRQQDNDLGSENNSCSSQETHGSLNQLSTEETTSSEFHNQGHCDNGEVSSCAATIHHSHEPETSQISLKSFLSTSSDFISYAEDLFDFNTNTERSRESNFRRRDSIVISDQRLALDFAKEVVRRKSLLLAEPTCHTRSSLDIDELLTEVCDGFESLTSYKDTFSGQNSFVKESIHLVLEKDLKGKKTEMTSGVWDLGWRSEFQIDETYEAVADLEKLILSGLIQEIIS", "length": 724, "header": "tr|Q9LJ43-1|Q9LJ43_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM34 PE=4 SV=1 CANONICAL=Q9LJ43-1" }, "isoforms": [ { "isoform_ac": "Q9LJ43-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ43/entry#Q9LJ43-1", "sequence": { "sequence": "MPEGKLRSGVYRSFIMCDDPRDVVECGAIKKQSKSRSSSTKQRCEEHLSKVKERSEMAVAPRKSSSTEDVPPSSLQLLRVSKGIQKLNVAIESLSKGFSFEAVSRPEDIAKDLLRGALDLEESLAMLSSIQEDDSKRKPMIRNDGRSDLRFQRSMSDRFGERIEKRMMVQENVASKDCYEELRKVIRESFLRQNLVSQTTTIETKKRVVRSDFASSSGAVSSSTSSSQSSMVSGSTKSSASSDVPQRAPSLIARLMGLDVSTQEPRKSSVNHIDKPDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVKPEPGSKQPVVPKKPRMQGEVHPRMINQRKDHQANGSNKMKLPLRMTKKDKEPKEMVPKVEENEGKVIKLMSPSNAKVLTRDRKPLETNKKLVVKKDDIAEGKDRHRALKPPSNPVSQKISNNSSDVSRNKSRRSSRLSSSSSSGSREKKSGEASRPNAKKKLRQQDNDLGSENNSCSSQETHGSLNQLSTEETTSSEFHNQGHCDNGEVSSCAATIHHSHEPETSQISLKSFLSTSSDFISYAEDLFDFNTNTERSRESNFRRRDSIVISDQRLALDFAKEVVRRKSLLLAEPTCHTRSSLDIDELLTEVCDGFESLTSYKDTFSGQNSFVKESIHLVLEKDLKGKKTEMTSGVWDLGWRSEFQIDETYEAVADLEKLILSGLIQEIIS", "length": 724, "header": "tr|Q9LJ43-1|Q9LJ43_ARATH Isoform 1 of DUF3741 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TRM34 PE=4 SV=1 CANONICAL=Q9LJ43-1" }, "locus": { "chromosome": "3", "start_pos": 8987835, "end_pos": 8990877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24630.2", "url": "https://www.ensemblgenomes.org/id/AT3G24630.2" }, { "database": "Ensembl Peptide", "id": "AT3G24630.2", "url": "https://www.ensemblgenomes.org/id/AT3G24630.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 716, "end_pos": 716, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ43" } ], "site_lbl": "Ser716" }, { "start_pos": 724, "end_pos": 724, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ43" } ], "site_lbl": "Ser724" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ43", "url": "https://www.uniprot.org/uniprotkb/Q9LJ43" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ43", "url": "https://www.uniprot.org/uniprotkb/Q9LJ43" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ43", "url": "https://www.uniprot.org/uniprotkb/Q9LJ43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LJ43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LJ43" }, { "id": "PF14383", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14383" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3741", "eco_id": "ECO_0000259", "start_pos": 246, "end_pos": 259, "start_aa": 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"total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LJ48-1", "uniprot_ac": "Q9LJ48", "uniprot_id": "FB191_ARATH", "mass": { "chemical_mass": 53970.0, "monoisotopic_mass": 53970.0 }, "refseq": { "ac": "NP_001326343", "name": "F-box/RNI-like superfamily 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"taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LJ48", "url": "https://www.uniprot.org/uniprotkb/Q9LJ48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LJ48", "locus": {} } ], "crossref": [ { "id": "Q9LJ48", "url": "https://alphafold.ebi.ac.uk/entry/Q9LJ48", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G29830", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G29830", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "822699", "url": "https://www.ncbi.nlm.nih.gov/gene/822699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G29830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "METFELC", "url": "https://omabrowser.org/oma/group/METFELC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LJ48", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LJ48", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001326343", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001326343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LJ48", "url": "https://www.uniprot.org/uniprotkb/Q9LJ48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LJ48-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSVNQRDRISSLPDVVLVMILSFLSFKDNVKTSILSKRWRNICYEAKNISFKESEYVDISVFDYVSKRVSFVRYMLNWVSRVPIKVIESFEICLGFPVGFEVEIKSLIEFSISRQVKKLVLDFSSPFWDNTWDGLRNDDFVIELPALIYGLQTLESLTIYACMFDPSRFTNVGLRTLSIGWFRLEKIESLLSKFPLLESLSIISCYLDEVKLAGQIRVRELIIDNCIIPTMYCLLNLPNIEIFKYSGNVIVFDFQKVNMILLKEVYLDFFIEHENDEPTYSPKEAGDILSHLLNDLRSSRTLTVCSYLLEVISECNDPVDMLRDVQAQHLVLETLMHPNEFTGMRLLLDHCPNLETLTFQLLCLKPFPVRLQYIDSHTLWLENISSRCLRRTLKILVVRGFCNSWNEFYLLNYLVLPEHGFALERVELYLPPLQEMPRQWAYHGAAMLQKTSNRVQVILHSA", "length": 463, "header": "sp|Q9LJ48-1|FB191_ARATH Isoform 1 of Putative F-box protein At3g29830 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LJ48-1" }, "isoforms": [ { "isoform_ac": "Q9LJ48-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ48/entry#Q9LJ48-1", "sequence": { "sequence": "MDSVNQRDRISSLPDVVLVMILSFLSFKDNVKTSILSKRWRNICYEAKNISFKESEYVDISVFDYVSKRVSFVRYMLNWVSRVPIKVIESFEICLGFPVGFEVEIKSLIEFSISRQVKKLVLDFSSPFWDNTWDGLRNDDFVIELPALIYGLQTLESLTIYACMFDPSRFTNVGLRTLSIGWFRLEKIESLLSKFPLLESLSIISCYLDEVKLAGQIRVRELIIDNCIIPTMYCLLNLPNIEIFKYSGNVIVFDFQKVNMILLKEVYLDFFIEHENDEPTYSPKEAGDILSHLLNDLRSSRTLTVCSYLLEVISECNDPVDMLRDVQAQHLVLETLMHPNEFTGMRLLLDHCPNLETLTFQLLCLKPFPVRLQYIDSHTLWLENISSRCLRRTLKILVVRGFCNSWNEFYLLNYLVLPEHGFALERVELYLPPLQEMPRQWAYHGAAMLQKTSNRVQVILHSA", "length": 463, "header": "sp|Q9LJ48-1|FB191_ARATH Isoform 1 of Putative F-box protein At3g29830 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LJ48-1" }, "locus": { "chromosome": "3", "start_pos": 11737049, "end_pos": 11738847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29830.2", "url": "https://www.ensemblgenomes.org/id/AT3G29830.2" }, { "database": "Ensembl Peptide", "id": "AT3G29830.2", "url": "https://www.ensemblgenomes.org/id/AT3G29830.2" } ] } } ], 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"MLHTSDGLEFAFLGESNGTKEMKLVSSDAKDMSQSQVEFSEDIVNLVVEDSEIDEDCSIWGKPKRKGSSIFRKPKRKEETTTIILQENLQFATPILVPKWLQTRLLRLLSDDIKPSLNNKVAKWSPISDELRTRSVSRKYATVL", "length": 144, "header": "tr|Q9LJ53-1|Q9LJ53_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LJ53-1" }, "isoforms": [ { "isoform_ac": "Q9LJ53-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJ53/entry#Q9LJ53-1", "sequence": { "sequence": "MLHTSDGLEFAFLGESNGTKEMKLVSSDAKDMSQSQVEFSEDIVNLVVEDSEIDEDCSIWGKPKRKGSSIFRKPKRKEETTTIILQENLQFATPILVPKWLQTRLLRLLSDDIKPSLNNKVAKWSPISDELRTRSVSRKYATVL", "length": 144, "header": "tr|Q9LJ53-1|Q9LJ53_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LJ53-1" }, "locus": { "chromosome": "3", "start_pos": 11693095, "end_pos": 11693622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29790.1", "url": "https://www.ensemblgenomes.org/id/AT3G29790.1" }, { "database": "Ensembl Peptide", "id": 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and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ92", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ92" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJ92", "url": "https://www.uniprot.org/uniprotkb/Q9LJ92" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, 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Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ94" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ94" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and 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response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ94" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LJ94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJ94" } ], "reference": [ { 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Peptide", "id": "AT3G26934.1", "url": "https://www.ensemblgenomes.org/id/AT3G26934.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 46, "end_pos": 46, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJF6" } ], "site_lbl": "Ser46" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek 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K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJF6", "url": "https://www.uniprot.org/uniprotkb/Q9LJF6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJF6", "url": "https://www.uniprot.org/uniprotkb/Q9LJF6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26934", "name": "", "url": 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"tr|Q9LJG5-1|Q9LJG5_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJG5-1" }, "isoforms": [ { "isoform_ac": "Q9LJG5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJG5/entry#Q9LJG5-1", "sequence": { "sequence": "MASSNSEKINENLYAVLGLKKECSKTELRSAYKKLALRWHPDRCSSMEFVEEAKKKFQAIQEAYSVLSDSNKRFLYDVGAYNTDDDDDQNGMGDFLNEMATMMNQSKPSDNNTGDSFEQLQDLFNEMFQGDAAAFPSSSSCSTSNFTSSRSFVFDTNSQRSSSFATSSMGMNNDPFGYDPRAHSFSLGVDHQQEFKKGKNNGGRRNRRKNNVPSAGHETSSSNNYGVPTS", "length": 230, "header": "tr|Q9LJG5-1|Q9LJG5_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJG5-1" }, "locus": { "chromosome": "3", "start_pos": 4712574, "end_pos": 4714698, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14200.1", "url": "https://www.ensemblgenomes.org/id/AT3G14200.1" }, { "database": "Ensembl Peptide", "id": "AT3G14200.1", "url": 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Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJG5", "url": "https://www.uniprot.org/uniprotkb/Q9LJG5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", 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M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJJ3", "url": "https://www.uniprot.org/uniprotkb/Q9LJJ3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJJ3", "url": "https://www.uniprot.org/uniprotkb/Q9LJJ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28620", "resource": "KEGG Pathway" 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"header": "tr|Q9LJJ9-1|Q9LJJ9_ARATH Isoform 1 of BCS1 AAA-type ATPase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LJJ9-1" }, "locus": { "chromosome": "3", "start_pos": 10707096, "end_pos": 10708591, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28560.1", "url": "https://www.ensemblgenomes.org/id/AT3G28560.1" }, { "database": "Ensembl Peptide", "id": "AT3G28560.1", "url": "https://www.ensemblgenomes.org/id/AT3G28560.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 139, "end_pos": 139, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJJ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJJ9" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr139" }, { "start_pos": 141, "end_pos": 141, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", 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Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJJ9", "url": "https://www.uniprot.org/uniprotkb/Q9LJJ9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJJ9", "url": 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"https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser236" }, { "start_pos": 80, "end_pos": 80, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJM6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser80" }, { "start_pos": 81, "end_pos": 81, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJM6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr81" }, { "start_pos": 96, "end_pos": 96, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJM6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser96" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJM6", "url": "https://www.uniprot.org/uniprotkb/Q9LJM6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LJM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJM6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LJM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJM6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJM6", "url": "https://www.uniprot.org/uniprotkb/Q9LJM6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": 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"", "url": "https://www.uniprot.org/uniprotkb/Q9LJN0", "locus": {} } ], "crossref": [ { "id": "28719291", "url": "https://www.ncbi.nlm.nih.gov/gene/28719291", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G19660", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19660", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMKMDKS", "url": "https://omabrowser.org/oma/group/YMKMDKS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34563", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34563", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34563:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34563:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319593", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319593", "database": "RefSeq", "categories": [ "Protein" ] }, { 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Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJN0", "url": "https://www.uniprot.org/uniprotkb/Q9LJN0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJN0", "url": "https://www.uniprot.org/uniprotkb/Q9LJN0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19660", "name": "", "url": 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"journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LJN1", "url": "https://www.uniprot.org/uniprotkb/Q9LJN1" }, { "database": "iPTMnet", "id": "Q9LJN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJN1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LJN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJN1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LJN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJN1" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": 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Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1 CANONICAL=Q9LJQ5-1" }, "isoforms": [ { "isoform_ac": "Q9LJQ5-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ5/entry#Q9LJQ5-1", "sequence": { "sequence": "MPIFTGSSSDSEDERTIHKTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKKFT", "length": 225, "header": "sp|Q9LJQ5-1|RTNLI_ARATH Isoform 1 of Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1 CANONICAL=Q9LJQ5-1" }, "locus": { "chromosome": "3", "start_pos": 6260135, "end_pos": 6261606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18260.1", "url": "https://www.ensemblgenomes.org/id/AT3G18260.1" }, { "database": "Ensembl Peptide", "id": "AT3G18260.1", "url": "https://www.ensemblgenomes.org/id/AT3G18260.1" } ] } } ], "glycosylation": [], 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II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ5", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ5" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Reticulon-like proteins in Arabidopsis thaliana: structural organization and ER localization.", "journal": "FEBS Lett.", "date": "2007", "authors": "Nziengui Hugues, Bouhidel Karim, Pillon David, Der Christophe, Marty Francis, Schoefs Beno\u00eet", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ5", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ5" } ], "reference": [ { "type": "PubMed", "id": "17604024", "url": "https://glygen.org/publication/PubMed/17604024" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ5" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ5", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G18260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G18260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ5", "url": 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LJQ7-1", "uniprot_ac": "Q9LJQ7", "uniprot_id": "Q9LJQ7_ARATH", "mass": { "chemical_mass": 70992.0, "monoisotopic_mass": 70992.0 }, "refseq": 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"url": "https://www.uniprot.org/uniprotkb/Q9LJQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METPLPPLSQLTPNPTPAAAVSSAIPAPVKSVAVQQPIDGSPRAVATDTGGIPEPLAAVPGAKLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSRLSSMLLNGRSFTLKYQLPSEDLDSLVTITTDEDLENMIEEYDRAASSATATATQRLRLFLFANKLETAATMGSLLDGTKSDTWFVDALNQSGLLPRGLSDSAAVNNTLVNLDEASGGETEIQNLETNVGGENNKRGDLVANGVISHQEMHMSSMPDSPMMEAAGSSIGSSSSSPSTSNLPPIRVRVSEDQRIEEQLAQMTFSNMQTQRQFDDGVSLMANRPMMIPPGAMNDAAMAYNNAPGDGTAPASNGHVSPEDDRSELGVSTGYRKPPLPMQPVTIPPRTVGGYGLTSPDSVASDTSISSATSFSKPMYYQDQPPALPRAPPVAQPETTSAQSSQVLPQTENTSAQTTSHVLSQPGTYTTMDQQQQQPLAQQPFLHQGVQYIPHPSQYIPIYSHQQQNYPVYVMSVPQSQQYIPAGTPPLYPNSKPGTNSRPEAAQNVYRAAPPQVIQLQQQHQYMGYAGAPQHSTNANANYGTGAPQHSTNANANYGGPFEYTNSPNETVYYHTQAPAANTAIPLASPYQSMTPAAAAAALADMSKQMALDGGKQQQHMAASQPL", "length": 666, "header": "tr|Q9LJQ7-1|Q9LJQ7_ARATH Isoform 1 of Octicosapeptide/Phox/Bem1p family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJQ7-1" }, "isoforms": [ { "isoform_ac": "Q9LJQ7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7/entry#Q9LJQ7-1", "sequence": { "sequence": "METPLPPLSQLTPNPTPAAAVSSAIPAPVKSVAVQQPIDGSPRAVATDTGGIPEPLAAVPGAKLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSRLSSMLLNGRSFTLKYQLPSEDLDSLVTITTDEDLENMIEEYDRAASSATATATQRLRLFLFANKLETAATMGSLLDGTKSDTWFVDALNQSGLLPRGLSDSAAVNNTLVNLDEASGGETEIQNLETNVGGENNKRGDLVANGVISHQEMHMSSMPDSPMMEAAGSSIGSSSSSPSTSNLPPIRVRVSEDQRIEEQLAQMTFSNMQTQRQFDDGVSLMANRPMMIPPGAMNDAAMAYNNAPGDGTAPASNGHVSPEDDRSELGVSTGYRKPPLPMQPVTIPPRTVGGYGLTSPDSVASDTSISSATSFSKPMYYQDQPPALPRAPPVAQPETTSAQSSQVLPQTENTSAQTTSHVLSQPGTYTTMDQQQQQPLAQQPFLHQGVQYIPHPSQYIPIYSHQQQNYPVYVMSVPQSQQYIPAGTPPLYPNSKPGTNSRPEAAQNVYRAAPPQVIQLQQQHQYMGYAGAPQHSTNANANYGTGAPQHSTNANANYGGPFEYTNSPNETVYYHTQAPAANTAIPLASPYQSMTPAAAAAALADMSKQMALDGGKQQQHMAASQPL", "length": 666, "header": "tr|Q9LJQ7-1|Q9LJQ7_ARATH Isoform 1 of Octicosapeptide/Phox/Bem1p family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJQ7-1" }, "locus": { "chromosome": "3", "start_pos": 6251315, "end_pos": 6254221, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18230.1", "url": "https://www.ensemblgenomes.org/id/AT3G18230.1" }, { "database": "Ensembl Peptide", "id": "AT3G18230.1", "url": "https://www.ensemblgenomes.org/id/AT3G18230.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 16, "start_aa": "Thr", "end_pos": 16, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr16", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 177, "end_pos": 177, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr177" }, { "start_pos": 41, "end_pos": 41, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser41" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ7", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ7", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ7", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7" }, { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ7", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7" }, { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9LJQ7", "url": "https://www.uniprot.org/uniprotkb/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9LJQ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJQ7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane 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"journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LJV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJV8" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LJV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJV8" } ], 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}, { "id": "PF04043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187894", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187894", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12880", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12880", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LJX2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKKMALLAKLLILTTLVTTISVISRANEELMMQQCHNSDNPTLCLRCLSSDPGSHEADKVGLARIILKCINSHLLVLTKNASTLGSQHYQNPNTAAALKQCGLGFSTAKHGVGEADTQLITGDYDKAAYDVSVKVVNPPVSCRNSLEALNIQVPSSFRYHMDVYLALTQALLRIVDRF", "length": 179, "header": "tr|Q9LJX2-1|Q9LJX2_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJX2-1" }, "isoforms": [ { "isoform_ac": "Q9LJX2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2/entry#Q9LJX2-1", "sequence": { "sequence": "MNKKMALLAKLLILTTLVTTISVISRANEELMMQQCHNSDNPTLCLRCLSSDPGSHEADKVGLARIILKCINSHLLVLTKNASTLGSQHYQNPNTAAALKQCGLGFSTAKHGVGEADTQLITGDYDKAAYDVSVKVVNPPVSCRNSLEALNIQVPSSFRYHMDVYLALTQALLRIVDRF", "length": 179, "header": "tr|Q9LJX2-1|Q9LJX2_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LJX2-1" }, "locus": { "chromosome": "3", "start_pos": 4095414, "end_pos": 4096236, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12880.1", "url": "https://www.ensemblgenomes.org/id/AT3G12880.1" }, { "database": "Ensembl Peptide", "id": "AT3G12880.1", "url": "https://www.ensemblgenomes.org/id/AT3G12880.1" } ] } } ], 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Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "enzyme inhibitor activity", "id": "GO:0004857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004857", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "pmid": "" }, { "name": "pectinesterase inhibitor activity", "id": "GO:0046910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046910", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plant-type cell wall", "id": "GO:0009505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009505", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LJX2", "url": "https://www.uniprot.org/uniprotkb/Q9LJX2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plant-type cell wall modification", "id": "GO:0009827", "url": 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24260", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LK19", "url": "https://www.uniprot.org/uniprotkb/Q9LK19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK19-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADADELMKTNGVKTQSSSVQTRLRSSVRLLRNPELTRELRRLKDNNLNRKIDHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRSELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFVDIAYGHGEDEAGTRVKVDDNPQDTESDKIKLEGKGKRGMLPPKESDQPERPLKKRRKTERATPNYKLIPKEEQTPVSSTVLNNTWVVNSYDIQAQKNLTDIEKDMYNWEDQMFELDMLVGFLTSAAKNAEEVINGERDLKDLGGKFYRCAENLYGRDMLEIVKENHQRVLPAILNRLNQKLREVTLVRERLKPVLKQTIEKLSTRQRGSTAQESQVKTRTI", "length": 374, "header": "tr|Q9LK19-1|Q9LK19_ARATH Isoform 1 of Paired amphipathic helix Sin3-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK19-1" }, "isoforms": [ { "isoform_ac": "Q9LK19-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK19/entry#Q9LK19-1", "sequence": { "sequence": "MADADELMKTNGVKTQSSSVQTRLRSSVRLLRNPELTRELRRLKDNNLNRKIDHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRSELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFVDIAYGHGEDEAGTRVKVDDNPQDTESDKIKLEGKGKRGMLPPKESDQPERPLKKRRKTERATPNYKLIPKEEQTPVSSTVLNNTWVVNSYDIQAQKNLTDIEKDMYNWEDQMFELDMLVGFLTSAAKNAEEVINGERDLKDLGGKFYRCAENLYGRDMLEIVKENHQRVLPAILNRLNQKLREVTLVRERLKPVLKQTIEKLSTRQRGSTAQESQVKTRTI", "length": 374, "header": "tr|Q9LK19-1|Q9LK19_ARATH Isoform 1 of Paired amphipathic helix Sin3-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK19-1" }, "locus": { "chromosome": "3", "start_pos": 8793837, "end_pos": 8794961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24260.1", "url": "https://www.ensemblgenomes.org/id/AT3G24260.1" }, { "database": "Ensembl Peptide", "id": "AT3G24260.1", "url": "https://www.ensemblgenomes.org/id/AT3G24260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK19", "url": "https://www.uniprot.org/uniprotkb/Q9LK19" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LK19", "url": "https://www.uniprot.org/uniprotkb/Q9LK19" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "Q9LK19", "url": "https://www.uniprot.org/uniprotkb/Q9LK19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LK19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK19" }, { "id": "SM00761", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00761" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone deacetylase interacting", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 299, "start_aa": "Lys", "end_aa": "Phe", 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CANONICAL=Q9LK44-1" }, "locus": { "chromosome": "3", "start_pos": 8551772, "end_pos": 8554839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23740.1", "url": "https://www.ensemblgenomes.org/id/AT3G23740.1" }, { "database": "Ensembl Peptide", "id": "AT3G23740.1", "url": "https://www.ensemblgenomes.org/id/AT3G23740.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 420, "start_aa": "Thr", "end_pos": 420, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr420", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 186, "end_pos": 186, "kinase_uniprot_canonical_ac": "", 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"title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta 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tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LK44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK44" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LK44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK44" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": 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"uniprot_ac": "Q9LK60", "uniprot_id": "Q9LK60_ARATH", "mass": { "chemical_mass": 23160.0, "monoisotopic_mass": 23160.0 }, "refseq": { "ac": "NP_187920", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187920" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "Q9LK60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK60/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_187920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187920" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK60", "url": "https://www.uniprot.org/uniprotkb/Q9LK60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK60", "locus": {} } ], "crossref": [ { "id": "AT3G13130", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G13130", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820501", "url": "https://www.ncbi.nlm.nih.gov/gene/820501", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G13130", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYFKFYF", "url": "https://omabrowser.org/oma/group/HYFKFYF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34947:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34947:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187920", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13130", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13130", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LK60", "url": "https://www.uniprot.org/uniprotkb/Q9LK60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK60-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQIKPEFLKKLTKFIAVSMWILSLLTSHDFYLYRFMIQLVTHAVDKNYMFLLCNGLVVVVAKCSGLVASSKPIEKIWSNTDKTFDYGDFESYTTILELEYKSDHGIGTESFLAEEVTVEEDTKHQETEDNEEEDDDDNTLADNDGEEECGLRGGSINEEEEGNVGVMTSTEEEMNKKFDEFIRKMKEELRIEAKRHLILV", "length": 201, "header": "tr|Q9LK60-1|Q9LK60_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK60-1" }, "isoforms": [ { "isoform_ac": "Q9LK60-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK60/entry#Q9LK60-1", "sequence": { "sequence": "MDQIKPEFLKKLTKFIAVSMWILSLLTSHDFYLYRFMIQLVTHAVDKNYMFLLCNGLVVVVAKCSGLVASSKPIEKIWSNTDKTFDYGDFESYTTILELEYKSDHGIGTESFLAEEVTVEEDTKHQETEDNEEEDDDDNTLADNDGEEECGLRGGSINEEEEGNVGVMTSTEEEMNKKFDEFIRKMKEELRIEAKRHLILV", "length": 201, "header": "tr|Q9LK60-1|Q9LK60_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LK60-1" }, "locus": { "chromosome": "3", "start_pos": 4222912, "end_pos": 4223759, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13130.1", "url": "https://www.ensemblgenomes.org/id/AT3G13130.1" }, { "database": "Ensembl Peptide", "id": "AT3G13130.1", "url": "https://www.ensemblgenomes.org/id/AT3G13130.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 27, "end_pos": 27, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK60", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK60" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr27" }, { "start_pos": 34, "end_pos": 34, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LK60", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK60" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr34" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK60", "url": "https://www.uniprot.org/uniprotkb/Q9LK60" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LK60", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK60" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LK60", "url": "https://www.uniprot.org/uniprotkb/Q9LK60" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G13130", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13130", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LK60", "url": "https://www.uniprot.org/uniprotkb/Q9LK60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 27, 34 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LK74-1", "uniprot_ac": "Q9LK74", "uniprot_id": "Q9LK74_ARATH", "mass": { "chemical_mass": 39286.0, "monoisotopic_mass": 39286.0 }, "refseq": { "ac": "NP_188272", "name": "Calcium-dependent lipid-binding (CaLB domain) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188272" }, "gene_names": [], "protein_names": [ { "name": "Calcium-dependent lipid-binding (CaLB domain) family protein", "type": "synonym", "evidence": [ { "id": "NP_188272", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188272" }, { "id": "Q9LK74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK74/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK74", "url": "https://www.uniprot.org/uniprotkb/Q9LK74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK74", "locus": {} } ], "crossref": [ { "id": "cd04051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820899", "url": "https://www.ncbi.nlm.nih.gov/gene/820899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LK74", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LK74*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G16510", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G16510", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PGHSYHQ", "url": "https://omabrowser.org/oma/group/PGHSYHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LK74", "url": "https://www.orthodb.org/?gene=Q9LK74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32246", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32246", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32246:SF173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32246:SF173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188272", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188272", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G16510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G16510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LK74", "url": "https://www.uniprot.org/uniprotkb/Q9LK74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK74-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNHTVKFSVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGMMRFVTYQVRTPFGKGQGSLTFSYRFDSPTFKPDQPVSSHVFHQDPPVSSSHVYTNPMDIPSDFSSATTNYPPPQSSEANFYPPLSSIGYPPSSPPQHYSSPPYPYPNPYQYHSHYPEQPVAVYPPPPPSASNLYPPPYYSTSPPQHQSYPPPPGHSFHQTQPSQSFHGFAPSSPQNQHGYGYPPPTSPGYGYGCPTTQVPPKNNNNKPGLGLGLGVGAGLLGGALGGLLISDIVSDIGFDF", "length": 360, "header": "tr|Q9LK74-1|Q9LK74_ARATH Isoform 1 of Calcium-dependent lipid-binding (CaLB domain) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK74-1" }, "isoforms": [ { "isoform_ac": "Q9LK74-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK74/entry#Q9LK74-1", "sequence": { "sequence": "MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNHTVKFSVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGMMRFVTYQVRTPFGKGQGSLTFSYRFDSPTFKPDQPVSSHVFHQDPPVSSSHVYTNPMDIPSDFSSATTNYPPPQSSEANFYPPLSSIGYPPSSPPQHYSSPPYPYPNPYQYHSHYPEQPVAVYPPPPPSASNLYPPPYYSTSPPQHQSYPPPPGHSFHQTQPSQSFHGFAPSSPQNQHGYGYPPPTSPGYGYGCPTTQVPPKNNNNKPGLGLGLGVGAGLLGGALGGLLISDIVSDIGFDF", "length": 360, "header": "tr|Q9LK74-1|Q9LK74_ARATH Isoform 1 of Calcium-dependent lipid-binding (CaLB domain) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK74-1" }, "locus": { "chromosome": "3", "start_pos": 5616801, "end_pos": 5618322, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G16510.1", "url": "https://www.ensemblgenomes.org/id/AT3G16510.1" }, { "database": "Ensembl Peptide", "id": "AT3G16510.1", "url": "https://www.ensemblgenomes.org/id/AT3G16510.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { 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Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK74", "url": "https://www.uniprot.org/uniprotkb/Q9LK74" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved 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Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK79", "url": "https://www.uniprot.org/uniprotkb/Q9LK79" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189429" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK86", "locus": {} } ], "crossref": [ { "id": "Q9LK86", "url": "https://alphafold.ebi.ac.uk/entry/Q9LK86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G27910", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G27910", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22152", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22152", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "822414", "url": "https://www.ncbi.nlm.nih.gov/gene/822414", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050354", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050354", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G27910", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR24414", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24414", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24414:SF70", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24414:SF70", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LK86", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LK86", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_189429", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189429", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G27910", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G27910", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK86-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFVVSVNAANPTPKVKKPTVARSIPSPTSLPLPDEIIVNCFAYIPRCDYPSLSLVSKTFNRLITSIELNIVRSLFQRTENVLYVALRFSHEEDPIWYTLNQKPYKNKSNSCIHKLVPLPSCPSLPCWGSSVIAIGHKIYVFGGCINGDMTSNVFVIDCLHGTFQFLPSMRVPRGCAAFGIVDGKIYVIGGYNKADSLDNWVEVFDLEKQTWESFSGLCNEELSKITLKSVVMNKKIYIMDRGNGIVFDPKKGVWERDFLLDRDWVVGSCVIDNMLYTFGFDSVKRIYRVRVYDPSVRVWSFVKGIEDIPKMDGTLGSRMANHGGKLVILLNLDKNGGTELWCIKIALERRGQQGEIWGKILWYNLVLTLENSSTIVECFDITI", "length": 384, "header": "sp|Q9LK86-1|FBK71_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At3g27910 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9LK86-1" }, "isoforms": [ { "isoform_ac": "Q9LK86-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK86/entry#Q9LK86-1", "sequence": { "sequence": "MTFVVSVNAANPTPKVKKPTVARSIPSPTSLPLPDEIIVNCFAYIPRCDYPSLSLVSKTFNRLITSIELNIVRSLFQRTENVLYVALRFSHEEDPIWYTLNQKPYKNKSNSCIHKLVPLPSCPSLPCWGSSVIAIGHKIYVFGGCINGDMTSNVFVIDCLHGTFQFLPSMRVPRGCAAFGIVDGKIYVIGGYNKADSLDNWVEVFDLEKQTWESFSGLCNEELSKITLKSVVMNKKIYIMDRGNGIVFDPKKGVWERDFLLDRDWVVGSCVIDNMLYTFGFDSVKRIYRVRVYDPSVRVWSFVKGIEDIPKMDGTLGSRMANHGGKLVILLNLDKNGGTELWCIKIALERRGQQGEIWGKILWYNLVLTLENSSTIVECFDITI", "length": 384, "header": "sp|Q9LK86-1|FBK71_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At3g27910 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q9LK86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural analysis of Arabidopsis thaliana chromosome 3. 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Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.", "journal": "DNA Res.", "date": "2000", "authors": "Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S", "evidence": [ { "database": "UniProtKB", "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" } ], "reference": [ { "type": "PubMed", "id": "10907853", "url": "https://glygen.org/publication/PubMed/10907853" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G27910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27910", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "Q9LK86", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-Q9LK86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 384, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-Q9LK86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/Q9LK86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LK86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK86" }, { "id": "PRU00080", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00080" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000255", "start_pos": 27, "end_pos": 79, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"url": "https://www.uniprot.org/uniprotkb/Q9LK89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKDDATASFSPSFSTYSGDRLVEIAERVCYKEKSDAEFEFSTAATSSSGDGGLVFPVFNKNLISGDVSPEKVIPLKDLFLRERNDQQPPQQTYSSSSDEEEEDDEFDSIPSEIYCPWTPARSTADMSPSGGCRKSKSTGSSSTSTWSTKRWRLRDFLKRSKSDGKQSLKFLNPTNRDDDDESSKSKKKVSVSVTVSAHEKFYLRNKAIKEEDKRKSYLPYKQDLVGLFSNIHRYGKTFPPF", "length": 242, "header": "tr|Q9LK89-1|Q9LK89_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK89-1" }, "isoforms": [ { "isoform_ac": "Q9LK89-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK89/entry#Q9LK89-1", "sequence": { "sequence": "MEKDDATASFSPSFSTYSGDRLVEIAERVCYKEKSDAEFEFSTAATSSSGDGGLVFPVFNKNLISGDVSPEKVIPLKDLFLRERNDQQPPQQTYSSSSDEEEEDDEFDSIPSEIYCPWTPARSTADMSPSGGCRKSKSTGSSSTSTWSTKRWRLRDFLKRSKSDGKQSLKFLNPTNRDDDDESSKSKKKVSVSVTVSAHEKFYLRNKAIKEEDKRKSYLPYKQDLVGLFSNIHRYGKTFPPF", "length": 242, "header": "tr|Q9LK89-1|Q9LK89_ARATH Isoform 1 of Uncharacterized 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"iPTMnet", "id": "Q9LK89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK89" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser69" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK89", "url": "https://www.uniprot.org/uniprotkb/Q9LK89" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LK89", "url": "https://www.uniprot.org/uniprotkb/Q9LK89" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9LK89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LK89" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT3G27880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LK89", "url": "https://www.uniprot.org/uniprotkb/Q9LK89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 69, 203 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LK96-1", "uniprot_ac": "Q9LK96", "uniprot_id": "Q9LK96_ARATH", "mass": { "chemical_mass": 39394.0, "monoisotopic_mass": 39394.0 }, "refseq": { "ac": "NP_188127", "name": "GroES-like zinc-binding alcohol dehydrogenase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188127" }, "gene_names": [], "protein_names": [ { "name": "GroES-like zinc-binding alcohol dehydrogenase family protein", "type": "synonym", "evidence": [ { "id": "NP_188127", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188127" }, { "id": "Q9LK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LK96", "locus": {} } ], "crossref": [ { "id": "cd05289", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05289", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820739", "url": "https://www.ncbi.nlm.nih.gov/gene/820739", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LK96", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LK96*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G15090", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15090", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PVVPGWD", "url": "https://omabrowser.org/oma/group/PVVPGWD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LK96", "url": "https://www.orthodb.org/?gene=Q9LK96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43482:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43482:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188127", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188127", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G15090", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G15090", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LK96-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVMRSLRGNSGAGLVFRPARLNSLRSVFTGCRAVILPRFGGPEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLPIIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTALRGTYTDYGILSEDELTEKPSSISHVEASAIPFAALTAWRALKSNARITEGQRLLVFGGGGAVGFSAIQLAVASGCHVTASCVGQTKDRILAAGAEQAVDYTTEDIELAVKGKFDAVLDTIGGPETERIGINFLRKGGNYMTLQGEAASLTDKYGFVVGLPLATSLLMKKKIQYQYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPGKVVLEF", "length": 366, "header": "tr|Q9LK96-1|Q9LK96_ARATH Isoform 1 of GroES-like zinc-binding alcohol dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK96-1" }, "isoforms": [ { "isoform_ac": "Q9LK96-1", "url": "https://www.uniprot.org/uniprotkb/Q9LK96/entry#Q9LK96-1", "sequence": { "sequence": "MRVMRSLRGNSGAGLVFRPARLNSLRSVFTGCRAVILPRFGGPEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLPIIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTALRGTYTDYGILSEDELTEKPSSISHVEASAIPFAALTAWRALKSNARITEGQRLLVFGGGGAVGFSAIQLAVASGCHVTASCVGQTKDRILAAGAEQAVDYTTEDIELAVKGKFDAVLDTIGGPETERIGINFLRKGGNYMTLQGEAASLTDKYGFVVGLPLATSLLMKKKIQYQYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPGKVVLEF", "length": 366, "header": "tr|Q9LK96-1|Q9LK96_ARATH Isoform 1 of GroES-like zinc-binding alcohol dehydrogenase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LK96-1" }, "locus": { "chromosome": "3", "start_pos": 5076624, "end_pos": 5079159, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G15090.1", "url": "https://www.ensemblgenomes.org/id/AT3G15090.1" }, { "database": "Ensembl Peptide", "id": "AT3G15090.1", "url": "https://www.ensemblgenomes.org/id/AT3G15090.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G15090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G15090", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54II4-1", "protein_name": "NAD(P)H oxidoreductase RTN4IP1, mitochondrial", "gene_name": "rtn4ip1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDSVWDYEIGDQVWSASPPFSMGSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLKKHLNVNQVSTTCNIKHFEKLKKLTLVNETIDYNNLKINDNDNNKFDLIFNCYDGGKNQNENEKKCIDALKDGGNLIGFNGPLVKFSDKDGVLSGLPMGMMNQLNSSERIKKQYSKNVHLDYAIFSPSGSTLKQISKLYENNILIPNIDKQFNLNQIKDAYTCFENSNSNGKIIINNKF", "length": 352 }, "evidence": [ { "id": "Q9LK96", "url": "https://omabrowser.org/oma/group/Q9LK96/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8IPZ3-1", "protein_name": "NAD(P)H oxidoreductase RTN4IP1, mitochondrial", "gene_name": "Rtn4ip1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTAAGFNSILCLRQLVRLNRRQYSAPAKSVLSGSQTNDQATPPPTSKSADKMRGWQLHNYGDIDELQLSEMLKIPQIRCSNECLVRIRATAVNPIDLAMLRGYGATVLNKMRCQPGDGIEFPLILGREFCGELVQTGMGVSLPLGSRVWGVVPLQATIGSHAEYVAVPSYCLAPAPKELDDYEAASVLYAGLTAWSGLYITGGLGGPCGATTASGGGAHKRVLVLGGSGGVGTLAIQILKSQKVQVLATCSENAIEMVRNLGADLVVDYNNPQAMEELCKYAPYDIVLDCAGQGGQKAAESKYDFRQYITFSSPLLANIDKQGLGVGALKNVFDLFQTNVRSVTQRGGLVKWGFFSPAPQGIQFLQKLVEQRKLMPLIDSSYGFSELPKAFEKMKSGHLRGKIVVKLREETGD", "length": 413 }, "evidence": [ { "id": "Q9LK96", "url": "https://omabrowser.org/oma/group/Q9LK96/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "Q9LK96", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LK96" }, { "id": "SM00829", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00829" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Enoyl reductase (ER)", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 364, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LKB2-1", "uniprot_ac": "Q9LKB2", "uniprot_id": "Q9LKB2_ARATH", "mass": { "chemical_mass": 68996.0, "monoisotopic_mass": 68996.0 }, "refseq": { "ac": "NP_188110", "name": "Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagine amidase A protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188110" }, "gene_names": [], "protein_names": [ { "name": 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"https://www.brenda-enzymes.org/enzyme.php?ecno=3.5.1.52&UniProtAcc=Q9LKB2", "database": "BRENDA", "categories": [ "Enzyme and Pathway" ] }, { "id": "820721", "url": "https://www.ncbi.nlm.nih.gov/gene/820721", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G14920", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TNANQEF", "url": "https://omabrowser.org/oma/group/TNANQEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LKB2", "url": "https://www.orthodb.org/?gene=Q9LKB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25156", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25156", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188110", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188110", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14920", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14920", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LKB2", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LKB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSSLPPLIFFFTVFFVHSLSAVSDLHETRSRFKPPQFSPLFFSSLPQNVTKSPTRYFEVQKPPVPNLPTAQQPCSYQILHHDFGYTYAKPPVLSNYTLPSHCSSREFSKIVLEFKSTSQGRQFDRIFGVWLDGVEILRSCTAEPRPNGIVWSVEKDVTKYHSLLVKNETQILSVYLGNLIDKTYTGVYHVDVIFHFYQSESNLQDVSGYSSSKADMILPISRNLPLNDGLWFEIVNSNDTKYKEFEIPRNVYRAVLEVYVSFHENDEFWYGNLPNDYVTANNLSVAGNGPFREVVVSLDGDIAGAVWPFPVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSRSSLEISSVSDFKGLNGNFTTKAKRSITSVGLVKSSHGDIITNANQEFSYENKMVLGKDGNLQIIDQLIQADDRIHAKRASREIYAAKSIKSFPFYLDSDTLEQQNNTYLAVANVSMAFNEERSESDKGLMRTFKSKLENKQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSDQCYFRNISSYNYTILYDKVESVCKKKTLKLPPRLEHLPRQHPLLA", "length": 609, "header": "tr|Q9LKB2-1|Q9LKB2_ARATH Isoform 1 of Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LKB2-1" }, "isoforms": [ { "isoform_ac": "Q9LKB2-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2/entry#Q9LKB2-1", "sequence": { "sequence": "MTSSLPPLIFFFTVFFVHSLSAVSDLHETRSRFKPPQFSPLFFSSLPQNVTKSPTRYFEVQKPPVPNLPTAQQPCSYQILHHDFGYTYAKPPVLSNYTLPSHCSSREFSKIVLEFKSTSQGRQFDRIFGVWLDGVEILRSCTAEPRPNGIVWSVEKDVTKYHSLLVKNETQILSVYLGNLIDKTYTGVYHVDVIFHFYQSESNLQDVSGYSSSKADMILPISRNLPLNDGLWFEIVNSNDTKYKEFEIPRNVYRAVLEVYVSFHENDEFWYGNLPNDYVTANNLSVAGNGPFREVVVSLDGDIAGAVWPFPVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSRSSLEISSVSDFKGLNGNFTTKAKRSITSVGLVKSSHGDIITNANQEFSYENKMVLGKDGNLQIIDQLIQADDRIHAKRASREIYAAKSIKSFPFYLDSDTLEQQNNTYLAVANVSMAFNEERSESDKGLMRTFKSKLENKQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSDQCYFRNISSYNYTILYDKVESVCKKKTLKLPPRLEHLPRQHPLLA", "length": 609, "header": "tr|Q9LKB2-1|Q9LKB2_ARATH Isoform 1 of Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LKB2-1" }, "locus": { "chromosome": "3", "start_pos": 5017941, "end_pos": 5020476, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14920.1", "url": "https://www.ensemblgenomes.org/id/AT3G14920.1" }, { "database": "Ensembl Peptide", "id": "AT3G14920.1", "url": "https://www.ensemblgenomes.org/id/AT3G14920.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB2", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB2", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G14920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14920", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB2", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB2", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LKB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB2" }, { "id": "PF12222", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A N-terminal", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 388, "start_aa": "Thr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"sequence": { "sequence": "MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDPDAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQSRILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNRKGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSVISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARASSLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLLQPAYRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSLS", "length": 455, "header": "tr|Q9LKB3-1|Q9LKB3_ARATH Isoform 1 of Rab3 GTPase-activating protein non-catalytic subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LKB3-1" }, "isoforms": [ { "isoform_ac": "Q9LKB3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3/entry#Q9LKB3-1", "sequence": { "sequence": "MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDPDAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQSRILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNRKGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSVISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARASSLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLLQPAYRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSLS", "length": 455, "header": "tr|Q9LKB3-1|Q9LKB3_ARATH Isoform 1 of Rab3 GTPase-activating protein non-catalytic subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LKB3-1" }, "locus": { "chromosome": "3", "start_pos": 5015411, "end_pos": 5017861, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14910.1", "url": "https://www.ensemblgenomes.org/id/AT3G14910.1" }, { "database": "Ensembl Peptide", "id": "AT3G14910.1", "url": "https://www.ensemblgenomes.org/id/AT3G14910.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 234, "start_aa": "Thr", "end_pos": 234, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr234", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 272, "end_pos": 272, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LKB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKB3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser272" }, { "start_pos": 301, "end_pos": 301, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LKB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKB3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser301" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB3", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LKB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKB3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LKB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKB3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB3", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G14910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14910", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "establishment of protein localization to endoplasmic reticulum membrane", "id": "GO:0097051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097051", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB3", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3" } ], "pmid": "" }, { "name": "macroautophagy", "id": "GO:0016236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016236", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB3", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": 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426, "end_pos": 428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB3" }, { "id": "PF14655", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14655" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab3-GAP regulatory subunit N-terminal", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 417, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 234 ], "snv_sites": [], "glycation_sites": [], 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LKB4-1", "uniprot_ac": "Q9LKB4", "uniprot_id": "Q9LKB4_ARATH", "mass": { "chemical_mass": 71221.0, "monoisotopic_mass": 71221.0 }, "refseq": { "ac": "NP_188108", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188108" }, "gene_names": [ { "name": "EMB3120", "type": "recommended", "evidence": [ { "id": "Q9LKB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ] }, { "name": "EMB3120", "type": "synonym", "evidence": [ { "id": "NP_188108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188108" } ] }, { "name": "EMBRYO DEFECTIVE 3120", "type": "synonym", "evidence": [ { "id": "NP_188108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188108" }, { "id": "Q9LKB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "Q9LKB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_188108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188108" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "EMB3120", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4", "locus": { "chromosome": "CP002686.1", "start_pos": 5013291, "end_pos": 5015342, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G14900", "url": "https://www.ensemblgenomes.org/id/AT3G14900" } ] } } ], "crossref": [ { "id": "AT3G14900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G14900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820719", "url": "https://www.ncbi.nlm.nih.gov/gene/820719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G14900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HDWYKYG", "url": "https://omabrowser.org/oma/group/HDWYKYG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR37911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37911:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37911:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_188108", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LKB4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSQDLSFSKTLNPSFSFRKSPLNSGVRRIVSVLPAITERNYAFSVKRSELLLREDGGFRRDVRALAGRSKKKLGGGSSGGRIEGDSDMRKQVKRNAREKSKKLAESLFYRLYNNPDKSRSQILSSHPDKFTEEELEMIGLGYDRMVRFMDKDDPRLRHPYDWFKYGEFGPYSWRGVVVGDPVRGTISDECVTMIGEVENHEEFEKIEQHEMNIAFQKRVKELDSNVGLRYFWVFVRHPKWRLSELPWEQWTLVSEVVVEADKKQRLDKWNLMGRLGNKSRSLICQCAAWFRPDIVYVKKPVFQCRFEPQEDFFNSLIPYLNPVTESGFVCEVEDDEGRVELSTYYGGLCKMLKVRQTAFVDDVVNAYEKLSDEKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEMELGCDAPDEDEDEISISGSSEKAEFSEWIEDEADNDDDDDDDDDDDGEVEEVDDDDNMVVDVEGNVEEDSLEDEIEESDPEEDERYWEEQFNKATNNAERMEKLAEMSMVVSDKFYEKQLKALEEREKGEIEGDELEMRGKKAKVKPEEWKTVGYGRWMKKIKKSRIPPELFLRAAVRPFVYRNLVKEIVLTRHAILEGEIGQKE", "length": 611, "header": "tr|Q9LKB4-1|Q9LKB4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=EMB3120 PE=1 SV=1 CANONICAL=Q9LKB4-1" }, "isoforms": [ { "isoform_ac": "Q9LKB4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4/entry#Q9LKB4-1", "sequence": { "sequence": "MLSQDLSFSKTLNPSFSFRKSPLNSGVRRIVSVLPAITERNYAFSVKRSELLLREDGGFRRDVRALAGRSKKKLGGGSSGGRIEGDSDMRKQVKRNAREKSKKLAESLFYRLYNNPDKSRSQILSSHPDKFTEEELEMIGLGYDRMVRFMDKDDPRLRHPYDWFKYGEFGPYSWRGVVVGDPVRGTISDECVTMIGEVENHEEFEKIEQHEMNIAFQKRVKELDSNVGLRYFWVFVRHPKWRLSELPWEQWTLVSEVVVEADKKQRLDKWNLMGRLGNKSRSLICQCAAWFRPDIVYVKKPVFQCRFEPQEDFFNSLIPYLNPVTESGFVCEVEDDEGRVELSTYYGGLCKMLKVRQTAFVDDVVNAYEKLSDEKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEMELGCDAPDEDEDEISISGSSEKAEFSEWIEDEADNDDDDDDDDDDDGEVEEVDDDDNMVVDVEGNVEEDSLEDEIEESDPEEDERYWEEQFNKATNNAERMEKLAEMSMVVSDKFYEKQLKALEEREKGEIEGDELEMRGKKAKVKPEEWKTVGYGRWMKKIKKSRIPPELFLRAAVRPFVYRNLVKEIVLTRHAILEGEIGQKE", "length": 611, "header": "tr|Q9LKB4-1|Q9LKB4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=EMB3120 PE=1 SV=1 CANONICAL=Q9LKB4-1" }, "locus": { "chromosome": "3", "start_pos": 5013291, "end_pos": 5015342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14900.1", "url": "https://www.ensemblgenomes.org/id/AT3G14900.1" }, { "database": "Ensembl Peptide", "id": "AT3G14900.1", "url": "https://www.ensemblgenomes.org/id/AT3G14900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G14900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14900", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "pmid": "" }, { "name": "chloroplast stroma", "id": "GO:0009570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009570", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "embryo development ending in seed dormancy", "id": "GO:0009793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009793", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB4", "url": "https://www.uniprot.org/uniprotkb/Q9LKB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 278, "end_pos": 280 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LKB6-1", "uniprot_ac": "Q9LKB6", "uniprot_id": "Q9LKB6_ARATH", "mass": { "chemical_mass": 28097.0, "monoisotopic_mass": 28097.0 }, "refseq": { "ac": "NP_188106", "name": "transcription factor-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188106" }, "gene_names": [], "protein_names": [ { "name": "Transcription factor-like protein", "type": "synonym", "evidence": [ { "id": "Q9LKB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LKB6/entry#names_and_taxonomy" } ] }, { "name": "transcription factor-like protein", "type": "synonym", "evidence": [ { "id": "NP_188106", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188106" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LKB6", "url": "https://www.uniprot.org/uniprotkb/Q9LKB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LKB6", "locus": {} } ], "crossref": [ { "id": "820717", "url": "https://www.ncbi.nlm.nih.gov/gene/820717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WQDGASE", "url": "https://omabrowser.org/oma/group/WQDGASE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LKB6", "url": "https://www.orthodb.org/?gene=Q9LKB6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46354:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46354:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188106", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188106", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14880", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14880", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LKB6", "url": "https://www.uniprot.org/uniprotkb/Q9LKB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LKB6-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQETAIASFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEERLREAVDRVMEHFREYHRAKWAATDKDVIEVMASPWASALERSLQWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGDLSDLSPSQFRVPFVKGRTVSELQCETVKEENAITEELSEWQDDASDLVMGTSSDPDQRIRRLAEIVHRTDDLRLRTITRVVEVLSPLQQAEFLVAAAELRTGVAGWGTSHDRRRSSEV", "length": 244, "header": "tr|Q9LKB6-1|Q9LKB6_ARATH Isoform 1 of Transcription factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LKB6-1" }, "isoforms": [ { 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chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, 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"PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB7", "url": "https://www.uniprot.org/uniprotkb/Q9LKB7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "response to red or far red light", "id": "GO:0009639", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009639", "evidence": [ { "database": "UniProtKB", "id": "Q9LKB7", "url": "https://www.uniprot.org/uniprotkb/Q9LKB7" } ], "pmid": "" }, { "name": "negative gravitropism", "id": 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Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKC1", "url": "https://www.uniprot.org/uniprotkb/Q9LKC1" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LKC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKC1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LKC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKC1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LKC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKC1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete 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Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKU5", "url": "https://www.uniprot.org/uniprotkb/Q9LKU5" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LKU5", "url": "https://www.uniprot.org/uniprotkb/Q9LKU5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT5G28610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "Q9LKU5", "url": "https://www.uniprot.org/uniprotkb/Q9LKU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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"https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT5G28460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT5G28460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTNWLTQ", "url": "https://omabrowser.org/oma/group/KTNWLTQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47936", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47936", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47936:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47936:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:Q9LKU8", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LKU8", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT5G28460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G28460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LKU8", "url": "https://www.uniprot.org/uniprotkb/Q9LKU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LKU8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIMLSISRRQNSYILLNHSRFLRRFSYDVDPRPEIKSESQEFVVVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVASPTEKASPFDVFSLG", "length": 766, "header": "sp|Q9LKU8-1|PP401_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LKU8-1" }, "isoforms": [ { "isoform_ac": "Q9LKU8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LKU8/entry#Q9LKU8-1", "sequence": { "sequence": "MSIMLSISRRQNSYILLNHSRFLRRFSYDVDPRPEIKSESQEFVVVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVASPTEKASPFDVFSLG", "length": 766, "header": "sp|Q9LKU8-1|PP401_ARATH Isoform 1 of Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q9LKU8-1" }, "locus": { "chromosome": "5", "start_pos": 10374713, "end_pos": 10377379, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT5G28460.1", "url": "https://www.ensemblgenomes.org/id/AT5G28460.1" }, { "database": "Ensembl Peptide", "id": "AT5G28460.1", "url": "https://www.ensemblgenomes.org/id/AT5G28460.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LKU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKU8" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr151" }, { "start_pos": 155, "end_pos": 155, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LKU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LKU8" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr155" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See L H, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie W R, Wilson R K, Murphy G, Bancroft I, Volckaert G, Wambutt R, D\u00fcsterh\u00f6ft A, Stiekema W, Pohl T, Entian K D, Terryn N, Hartley N, Bent E, Johnson S, Langham S A, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst R K, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes H W, Bevan M, Fransz P, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LKU8", "url": "https://www.uniprot.org/uniprotkb/Q9LKU8" } ], "reference": [ { "type": "PubMed", "id": "11130714", "url": "https://glygen.org/publication/PubMed/11130714" } ] }, { "title": "Empirical analysis of transcriptional activity in the Arabidopsis genome.", "journal": "Science", "date": "2003", "authors": "Yamada Kayoko, Lim Jun, Dale Joseph M, Chen Huaming, Shinn Paul, Palm Curtis J, Southwick Audrey M, Wu Hank C, Kim Christopher, Nguyen Michelle, Pham Paul, Cheuk Rosa, Karlin-Newmann George, Liu Shirley X, Lam Bao, Sakano Hitomi, Wu Troy, Yu Guixia, Miranda Molly, Quach Hong L, Tripp Matthew, Chang Charlie H, Lee Jeong M, Toriumi Mitsue, Chan Marie M H, Tang Carolyn C, Onodera Courtney S, Deng Justine M, Akiyama Kenji, Ansari Yasser, Arakawa Takahiro, Banh Jenny, Banno Fumika, Bowser Leah, Brooks Shelise, Carninci Piero, Chao Qimin, Choy Nathan, Enju Akiko, Goldsmith Andrew D, Gurjal Mani, Hansen Nancy F, Hayashizaki Yoshihide, Johnson-Hopson Chanda, Hsuan Vickie W, Iida Kei, Karnes Meagan, Khan Shehnaz, Koesema Eric, Ishida Junko, Jiang Paul X, Jones Ted, Kawai Jun, Kamiya Asako, Meyers Cristina, Nakajima Maiko, Narusaka Mari, Seki Motoaki, Sakurai Tetsuya, Satou Masakazu, Tamse Racquel, Vaysberg Maria, Wallender Erika K, Wong Cecilia, Yamamura Yuki, Yuan Shiaulou, Shinozaki Kazuo, Davis Ronald W, Theologis Athanasios, Ecker Joseph R", "evidence": [ { "database": "UniProtKB", "id": "Q9LKU8", "url": "https://www.uniprot.org/uniprotkb/Q9LKU8" } ], "reference": [ { "type": "PubMed", "id": "14593172", "url": "https://glygen.org/publication/PubMed/14593172" } ] }, { "title": "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.", "journal": "Plant Cell", "date": "2004", "authors": "Lurin Claire, Andr\u00e9s Charles, Aubourg S\u00e9bastien, Bellaoui Mohammed, Bitton Fr\u00e9d\u00e9rique, Bruy\u00e8re Cl\u00e9mence, Caboche Michel, Debast C\u00e9drig, Gualberto Jos\u00e9, Hoffmann Beate, Lecharny Alain, Le Ret Monique, Martin-Magniette Marie-Laure, Mireau Hakim, Peeters Nemo, Renou Jean-Pierre, Szurek 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S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LM14", "url": "https://www.uniprot.org/uniprotkb/Q9LM14" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LM14", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LM14" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": 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CANONICAL=Q9LM21-1" }, "isoforms": [ { "isoform_ac": "Q9LM21-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM21/entry#Q9LM21-1", "sequence": { "sequence": "MFSPHDGTLCSKKRDHMKVFGESFHGSFKRSKQGDQKQTKFEKNTTTLFFQRSKSDSAMLIKPDVQLHLEAKTQSETFEDHRTDLDLNLNLYSSSSSSVKKTIMEKDECSKGGTVIISPSKKVRSGDIGLSRSPSWLAFEGDDDDNQKKQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTKQFQTLNLFKLLC", "length": 200, "header": "tr|Q9LM21-1|Q9LM21_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LM21-1" }, "locus": { "chromosome": "1", "start_pos": 7858864, "end_pos": 7859766, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22250.1", "url": "https://www.ensemblgenomes.org/id/AT1G22250.1" }, { "database": "Ensembl Peptide", "id": "AT1G22250.1", "url": "https://www.ensemblgenomes.org/id/AT1G22250.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 110, "end_pos": 110, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", 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Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LM21", "url": "https://www.uniprot.org/uniprotkb/Q9LM21" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9LM21", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LM21" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LM21", "url": "https://www.uniprot.org/uniprotkb/Q9LM21" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G22250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22250", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LM21", "url": "https://www.uniprot.org/uniprotkb/Q9LM21" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { 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"https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LM63", "database": "PRO", "categories": [ "Protein" ] }, { "id": "AT1G22000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G22000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LM63", "url": "https://www.uniprot.org/uniprotkb/Q9LM63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LM63-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFLWDIMPIDKHLSTVPETEGCQQRIETRICALPDDLLLQILPHVPTKEAVATSILSKQWRYVWLMLPKLEFKDEGSESVGWFIKKSLQLHKAPKLDCLIVELGPHCPIDVDVRKWVENAVNRDVKDLDFTLLWSAAPTSFPKSLYTCDTLVCLTLSNQILVDVSSPASLPSLLDLSLHYVVYKDDGSLVRLLSSSPVLKRLSVHSHEDDNLKTFTVKVSSLESLNYDENWLKDEVEDNEVDEVVDNEVEVDDLNGSLVIDSPALKELHLSEVWDYCLIENMSFLDEAFISNVPYPDEKFLRSLSSVKHLFLLFSKSMVACCNAIKFSWLIEFYFFPISLVDWLMPLMFLLQNSPKLKTPTIDNDFECLSLSWNQPSSIPGCLLSHLETFRWRGYGGREDAKKLLMTYILANSKCLKTVEISLLATCNLEETQKELKSMPRISQSSQLLISTKKLWRINERTYL", "length": 465, "header": "sp|Q9LM63-1|FDL5_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At1g22000 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LM63-1" }, "isoforms": [ { "isoform_ac": "Q9LM63-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM63/entry#Q9LM63-1", "sequence": { "sequence": "MSFLWDIMPIDKHLSTVPETEGCQQRIETRICALPDDLLLQILPHVPTKEAVATSILSKQWRYVWLMLPKLEFKDEGSESVGWFIKKSLQLHKAPKLDCLIVELGPHCPIDVDVRKWVENAVNRDVKDLDFTLLWSAAPTSFPKSLYTCDTLVCLTLSNQILVDVSSPASLPSLLDLSLHYVVYKDDGSLVRLLSSSPVLKRLSVHSHEDDNLKTFTVKVSSLESLNYDENWLKDEVEDNEVDEVVDNEVEVDDLNGSLVIDSPALKELHLSEVWDYCLIENMSFLDEAFISNVPYPDEKFLRSLSSVKHLFLLFSKSMVACCNAIKFSWLIEFYFFPISLVDWLMPLMFLLQNSPKLKTPTIDNDFECLSLSWNQPSSIPGCLLSHLETFRWRGYGGREDAKKLLMTYILANSKCLKTVEISLLATCNLEETQKELKSMPRISQSSQLLISTKKLWRINERTYL", "length": 465, "header": "sp|Q9LM63-1|FDL5_ARATH Isoform 1 of Putative F-box/FBD/LRR-repeat protein At1g22000 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LM63-1" }, "locus": { "chromosome": "1", "start_pos": 7744094, "end_pos": 7745744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22000.1", "url": "https://www.ensemblgenomes.org/id/AT1G22000.1" }, { "database": "Ensembl Peptide", "id": "AT1G22000.1", "url": "https://www.ensemblgenomes.org/id/AT1G22000.1" } ] } } ], "glycosylation": 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Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LM63", "url": "https://www.uniprot.org/uniprotkb/Q9LM63" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LM63", "url": "https://www.uniprot.org/uniprotkb/Q9LM63" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G22000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22000", 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{} } ], "crossref": [ { "id": "Q9LM64", "url": "https://alphafold.ebi.ac.uk/entry/Q9LM64", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G21990", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G21990", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd22160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "838802", "url": "https://www.ncbi.nlm.nih.gov/gene/838802", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", 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"crossref": [ { "id": "Q9LM73", "url": "https://alphafold.ebi.ac.uk/entry/Q9LM73", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G20800", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G20800", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838671", "url": "https://www.ncbi.nlm.nih.gov/gene/838671", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G20800", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G20800", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PR:Q9LM73", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LM73", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001319054", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319054", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G20800", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G20800", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "Q9LM73", 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"https://www.uniprot.org/uniprotkb/Q9LM73/entry#Q9LM73-1", "sequence": { "sequence": "MENLPLHVFEKILLKLDPKSLAMMKCTRRSINSHISEDPYFKSNYLSLVGFGLLHNSYYGSKSLFCNPFGDSMPFRYTYSLDIKTRFLCSCSGLLLLFMDYLCVANPLTKRYRFLDHSKSIFLGRNKSGIQSCLHERYNVFESRPNHVYQFEITTGDSCWKLSETTITCSPSVPLADKKPVYFDGCIHWLRKDGSILAFNPETEQARLIPIKFPLELSAVANKFLFEATEKELALISATEESINVYSLEDILIDPKWVLVKEIQNGVLHKKTMRCWNVAAYNGKCLVLWQMNKVACDGDVFGYDLRANKWEVIGWIPEWCDGYQVFYLFKPSFSSAIELKQKVDVETMNMVHGDDCKYISTLRKLMSLIEEISPYAKRLFKKKGKRLMTEEETKLKMTVDEPSSSKCLDVMRFSKKRRFLGMEKINKRKRTVRSAGRSGVVEGFLLYVVTAQYCRNTGEKLPISMVFYGSVFDNMHLLP", "length": 479, "header": "sp|Q9LM73-1|FB14_ARATH Isoform 1 of Putative F-box protein At1g20800 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LM73-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J 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}, { "id": "ath:AT1G20795", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G20795", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMYQFEI", "url": "https://omabrowser.org/oma/group/TMYQFEI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LM74", "url": "https://www.orthodb.org/?gene=Q9LM74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PR:Q9LM74", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:Q9LM74", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_849692", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849692", 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Putative F-box protein At1g20795 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LM74-1" }, "isoforms": [ { "isoform_ac": "Q9LM74-1", "url": "https://www.uniprot.org/uniprotkb/Q9LM74/entry#Q9LM74-1", "sequence": { "sequence": "METLGLPLPLFEKILFRLDPISLVMMKCTRRSFNSHISEDPYFKSKYLSGVRSGLLHISSFGSKNLFCNPFGDSSSSRHHDFLDITTRILGSCSGLLLLFIDGLCVANPLTKRYRFLNYSKSMFLSRVDRWGILNFDLPSEKMNRLGLAVDQITQRFKVVCMNETETSDPDETMYQFEILTGDSCWRLSATTITCSASVLIMDKKPVYFDGSVHWLRKDGSILSFNPETEQARLIPIKFPLELCAVANKFLFSATEKELAFISATEDLINVYALENALIDPKWALVKQIKNGVSENKKIRYWNVAAYDGKYLVLWEMYKDIYNGVVHGYDLRANKWGVLGSVPSWCDCSHSFYNFTPSPFSSTIELNKKVDVRMITTVRDDYNVRMITMVRDDKHISTLKKIMKLTDEISPCAKSRWH", "length": 418, "header": "sp|Q9LM74-1|FB13_ARATH Isoform 1 of Putative F-box protein At1g20795 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LM74-1" }, "locus": { "chromosome": "1", "start_pos": 7226310, "end_pos": 7227566, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G20795.1", "url": 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"MAAVSSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVTAGAGDGEDKNETDATVIVADGYASANDAVQISSSSGGRKRGVPWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTDVPTKTENAPETFHLNDPYLVPVTFQAKPTFNLNTDAAPLSLNLCLASSFNLNEQPNSRHSAFTMMPSFSDGDSNSSIIRVA", "length": 285, "header": "tr|Q9LMC7-1|Q9LMC7_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMC7-1" }, "isoforms": [ { "isoform_ac": "Q9LMC7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMC7/entry#Q9LMC7-1", "sequence": { "sequence": "MAAVSSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVTAGAGDGEDKNETDATVIVADGYASANDAVQISSSSGGRKRGVPWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTDVPTKTENAPETFHLNDPYLVPVTFQAKPTFNLNTDAAPLSLNLCLASSFNLNEQPNSRHSAFTMMPSFSDGDSNSSIIRVA", "length": 285, "header": "tr|Q9LMC7-1|Q9LMC7_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LMC7-1" }, "locus": { "chromosome": "1", "start_pos": 6560762, "end_pos": 6562786, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G19000.1", "url": "https://www.ensemblgenomes.org/id/AT1G19000.1" }, { "database": "Ensembl Peptide", "id": "AT1G19000.1", "url": "https://www.ensemblgenomes.org/id/AT1G19000.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LMC7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMC7" } ], "site_lbl": "Ser39" }, { "start_pos": 44, "end_pos": 44, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LMC7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMC7" } ], "site_lbl": "Ser44" } ], 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ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LMJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMJ2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LMJ2", "url": "https://www.uniprot.org/uniprotkb/Q9LMJ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] 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"MENREVNWMKSGCKRRIELPEELLAEIVARLPFISITRFKSVCKGWRSLIESTYFRHLFVFAHRNSSSSWSLVCGTFGWSVEEMAGFYGCKRYGLPRRLGSYIPPHGLVDKHKIVACTDGLVLLQTVTKRETFSVGSPVLRQWVQLPPHPWKGISSSVLAIGLVTRVEDGVVMEYKVVCMDIDYRWEVESLILEIYSSLTGTWTRKKVRCPSLIVSLSYKRCLSLKKMLHWLDTHYRCRSSVGAIVAYDVYADDDEQQFRIIPFPDQKACFRRAYTTSGGFLVCINKIHLLLRLWRLEEYTSDSGRWQLTQEINLTSFGCDHHYFPVAMHPSETHITYMGNPEKALVSIDLKTHKLTLHTKSSAYRDTMVYHYLDTVYVSVEASFDHDVFYTPQFTLPTWMGSVPRSPSI", "length": 410, "header": "sp|Q9LMR4-1|FBK4_ARATH Isoform 1 of Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LMR4-1" }, "isoforms": [ { "isoform_ac": "Q9LMR4-1", "url": "https://www.uniprot.org/uniprotkb/Q9LMR4/entry#Q9LMR4-1", "sequence": { "sequence": 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"PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser588" }, { "start_pos": 629, "end_pos": 629, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LN03" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser629" }, { "start_pos": 634, "end_pos": 634, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LN03" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser634" } ], "glycation": [], 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Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LN03", "url": "https://www.uniprot.org/uniprotkb/Q9LN03" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LN03" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LN03" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": 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"Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LN03", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LN03" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LN03", "url": "https://www.uniprot.org/uniprotkb/Q9LN03" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "F633.5", "url": "https://www.uniprot.org/uniprotkb/Q9LNJ7", "locus": {} } ], "crossref": [ { "id": "839274", "url": "https://www.ncbi.nlm.nih.gov/gene/839274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9LNJ7", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9LNJ7*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT1G01240", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G01240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PWWRSTT", "url": "https://omabrowser.org/oma/group/PWWRSTT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q9LNJ7", "url": "https://www.orthodb.org/?gene=Q9LNJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33868", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33868", "database": "PANTHER", "categories": [ 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"MGAAEARALWQRTASRCFVVHEDAKMAPRLACCQHQQSSSGNTEKNSFSSGSFGDSSDFSCDTKWWLKGSTGFDEEVTNSFLEDTKCKKLHEFVDLIGIREEEDYSFISKKADATTPWWRSTTDKDELALMVATKSVDHNIQNCDLPPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSDDLSKGQLLEALRHSQTRAREAERAAREACAEKDRVITILLKQASQMLAYKQWLKLLEMEALYLQMKKEEEQEEQVKGMNLKKRKQRGEKKKKGETGRYMMAFALGFSLIGAGLLLGWTVGWLLPF", "length": 331, "header": "tr|Q9LNJ7-1|Q9LNJ7_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=F633.5 PE=4 SV=1 CANONICAL=Q9LNJ7-1" }, "isoforms": [ { "isoform_ac": "Q9LNJ7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNJ7/entry#Q9LNJ7-1", "sequence": { "sequence": "MGAAEARALWQRTASRCFVVHEDAKMAPRLACCQHQQSSSGNTEKNSFSSGSFGDSSDFSCDTKWWLKGSTGFDEEVTNSFLEDTKCKKLHEFVDLIGIREEEDYSFISKKADATTPWWRSTTDKDELALMVATKSVDHNIQNCDLPPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSDDLSKGQLLEALRHSQTRAREAERAAREACAEKDRVITILLKQASQMLAYKQWLKLLEMEALYLQMKKEEEQEEQVKGMNLKKRKQRGEKKKKGETGRYMMAFALGFSLIGAGLLLGWTVGWLLPF", "length": 331, "header": "tr|Q9LNJ7-1|Q9LNJ7_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=F633.5 PE=4 SV=1 CANONICAL=Q9LNJ7-1" }, "locus": { "chromosome": "1", "start_pos": 99866, "end_pos": 101987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G01240.2", "url": "https://www.ensemblgenomes.org/id/AT1G01240.2" }, { "database": "Ensembl Peptide", "id": "AT1G01240.2", "url": "https://www.ensemblgenomes.org/id/AT1G01240.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LNJ7", "url": "https://www.uniprot.org/uniprotkb/Q9LNJ7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LNJ7", "url": "https://www.uniprot.org/uniprotkb/Q9LNJ7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G01240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G01240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9LNJ7", "url": "https://www.uniprot.org/uniprotkb/Q9LNJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, 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"MFTGVKKMKKIHVPPETGKFMFCLFFSFLSCCHVCFSELSLNQTNTMIELSSFLNISDWNLPGSERNPCSWNGVLCSLPDNSSVISLSLSNFDLSNSSFLPLVCNLQTLESLDVSNNRLSSIPEGFVTNCERLIALKHLNFSTNKFSTSPGFRGFSKLAVLDFSHNVLSGNVGDYGFDGLVQLRSLNLSFNRLTGSVPVHLTKSLEKLEVSDNSLSGTIPEGIKDYQELTLIDLSDNQLNGSIPSSLGNLSKLESLLLSNNYLSGLIPESLSSIQTLRRFAANRNRFTGEIPSGLTKHLENLDLSFNSLAGSIPGDLLSQLKLVSVDLSSNQLVGWIPQSISSSLVRLRLGSNKLTGSVPSVAFESLQLLTYLEMDNNSLTGFIPPSFGNLVSLNLLNLAMNEFTGILPPAFGNLSRLQVIKLQQNKLTGEIPDTIAFLSNLLILNISCNSLSGSIPPSLSQLKRLSNMNLQGNNLNGTIPDNIQNLEDLIELQLGQNQLRGRIPVMPRKLQISLNLSYNLFEGSIPTTLSELDRLEVLDLSNNNFSGEIPNFLSRLMSLTQLILSNNQLTGNIPRFTHNVSVDVRGNPGVKLKTENEVSIQRNPSGKSKLVMIVIFVSLGVLALLTGIITVTVLKFSRRCKGINNMQVDPDEEGSTVLPEVIHGKLLTSNALHRSNINFAKAVEAVAHPEHGLHQTMFWSYYRVVMPSGSSYFIKKLNTRDRVFQQASSEQLEVELEMLGKLHHTNVMVPLAYVLYSEGCLLIYDFSHTCTLYEILHNHSSGVVDWTSRYSIAVGIAQGISYLHGSESSGRDPILLPDLSSKKILLKSLTEPLVGDIELFKVIDPSKSNSSLSAVAGTIGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGRPAVSEGRDLAKWVQSHSSHQEQQNNILDLRVSKTSTVATKQMLRALGVALACINISPGARPKMKTVLRMLTRL", "length": 966, "header": "tr|Q9LNK3-1|Q9LNK3_ARATH Isoform 1 of Leucine-rich repeat transmembrane protein kinase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LNK3-1" }, "isoforms": [ { "isoform_ac": "Q9LNK3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3/entry#Q9LNK3-1", "sequence": { "sequence": "MFTGVKKMKKIHVPPETGKFMFCLFFSFLSCCHVCFSELSLNQTNTMIELSSFLNISDWNLPGSERNPCSWNGVLCSLPDNSSVISLSLSNFDLSNSSFLPLVCNLQTLESLDVSNNRLSSIPEGFVTNCERLIALKHLNFSTNKFSTSPGFRGFSKLAVLDFSHNVLSGNVGDYGFDGLVQLRSLNLSFNRLTGSVPVHLTKSLEKLEVSDNSLSGTIPEGIKDYQELTLIDLSDNQLNGSIPSSLGNLSKLESLLLSNNYLSGLIPESLSSIQTLRRFAANRNRFTGEIPSGLTKHLENLDLSFNSLAGSIPGDLLSQLKLVSVDLSSNQLVGWIPQSISSSLVRLRLGSNKLTGSVPSVAFESLQLLTYLEMDNNSLTGFIPPSFGNLVSLNLLNLAMNEFTGILPPAFGNLSRLQVIKLQQNKLTGEIPDTIAFLSNLLILNISCNSLSGSIPPSLSQLKRLSNMNLQGNNLNGTIPDNIQNLEDLIELQLGQNQLRGRIPVMPRKLQISLNLSYNLFEGSIPTTLSELDRLEVLDLSNNNFSGEIPNFLSRLMSLTQLILSNNQLTGNIPRFTHNVSVDVRGNPGVKLKTENEVSIQRNPSGKSKLVMIVIFVSLGVLALLTGIITVTVLKFSRRCKGINNMQVDPDEEGSTVLPEVIHGKLLTSNALHRSNINFAKAVEAVAHPEHGLHQTMFWSYYRVVMPSGSSYFIKKLNTRDRVFQQASSEQLEVELEMLGKLHHTNVMVPLAYVLYSEGCLLIYDFSHTCTLYEILHNHSSGVVDWTSRYSIAVGIAQGISYLHGSESSGRDPILLPDLSSKKILLKSLTEPLVGDIELFKVIDPSKSNSSLSAVAGTIGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGRPAVSEGRDLAKWVQSHSSHQEQQNNILDLRVSKTSTVATKQMLRALGVALACINISPGARPKMKTVLRMLTRL", "length": 966, "header": "tr|Q9LNK3-1|Q9LNK3_ARATH Isoform 1 of Leucine-rich repeat transmembrane protein kinase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LNK3-1" }, "locus": { "chromosome": "1", "start_pos": 12584345, "end_pos": 12587778, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G34420.1", "url": "https://www.ensemblgenomes.org/id/AT1G34420.1" }, { "database": "Ensembl Peptide", "id": "AT1G34420.1", "url": "https://www.ensemblgenomes.org/id/AT1G34420.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 211, "end_pos": 211, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNK3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser211" }, { "start_pos": 214, "end_pos": 214, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNK3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser214" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK3", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LNK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNK3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK3", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G34420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G34420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK3", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK3", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK3", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 779, "end_pos": 781, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" }, { "start_pos": 850, "end_pos": 852, "annotation": "n_glycosylation_sequon" }, { "start_pos": 947, "end_pos": 949, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LNK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNK3" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 684, "end_pos": 966, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 211, 214 ], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 240, "end_pos": 242 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 446, "end_pos": 448 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 516, "end_pos": 518 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 580, "end_pos": 582 }, { "start_pos": 779, "end_pos": 781 }, { "start_pos": 81, "end_pos": 83 }, { "start_pos": 850, "end_pos": 852 }, { "start_pos": 947, "end_pos": 949 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "Q9LNK8-1", "uniprot_ac": "Q9LNK8", "uniprot_id": "Q9LNK8_ARATH", "mass": { "chemical_mass": 70975.0, "monoisotopic_mass": 70975.0 }, "refseq": { "ac": "NP_174707", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174707" }, "gene_names": [ { "name": "F12K21.20", "type": "synonym", "evidence": [ { "id": "NP_174707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174707" }, { "id": "Q9LNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8" } ] }, { "name": "F12K21_20", "type": "synonym", "evidence": [ { "id": "NP_174707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174707" }, { "id": "Q9LNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8" } ] } ], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_174707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174707" }, { "id": "Q9LNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LNK8", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8", "locus": {} } ], "crossref": [ { "id": "AT1G34480", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G34480", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "840350", "url": "https://www.ncbi.nlm.nih.gov/gene/840350", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G34480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G34480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CCHYCYY", "url": "https://omabrowser.org/oma/group/CCHYCYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", 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"MDPLKIENAANITVCRLRHDFDQKEDFRSEHFKDSPVLVLYPLDERKVLRSTHTSSSHPLVWCNNGENKDKYCKRESRCRVCSYLLDDDIGYYFLREDLGQKERIFFHKECIEPITNNPYHRKHPLQVLVSDYLKLNTICYCCCRRKELNFYCSICNFCICANCEAKPPLLTIDHKKRHEHMLSYFPREASITCNVCALDERRYFLYICHQCDFVVHKECIYSPCIIKISRHQHRLSFASSFLPRKWFCGVCRKKVDENYGGYSCVKGCYYVSHSRCALHKDVWDGKELEEEPDEIYKDILPFKEIAGGIIQHFSHKHQMRLHKYIDKKIEDNKHCQACALPVYNCDIFSCMECEFILHTVCANLSLQKEHVIHPHALFLQVGHMFSCSACQRQSNSFTYMCLMTNCNFRLDVICASTSEPLNHHFHPHLLFLPSDFGSTRICSICKVRSQTRFDCGKCDFVLCFYCATIPMKFRYKHDEHLLTFSYEQDASSEHWCDVCERKIYLKNGIYMCSECDITLHIQCLLGKEMYMLPGKEMIIYGGEEKDILRSNRLTRYICKKCNKRCQNGIVYKNSDETICCSMECLYQMFSSYIFNKRSITL", "length": 602, "header": "tr|Q9LNK8-1|Q9LNK8_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LNK8-1" }, "isoforms": [ { "isoform_ac": "Q9LNK8-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8/entry#Q9LNK8-1", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "Q9LNK8", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNK8" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 186, "start_aa": "Lys", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], 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"id": "Q9LNV0", "url": "https://www.uniprot.org/uniprotkb/Q9LNV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LNV0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSSEPLDLVVTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPLTRSVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELVRPSGRPQGKIRLKLAIKDRPIPPPQHPPPRPQSQPLDYYSAPQGNHYYSPSPPPPPPPQAPITAPSPQRDYREFSQSPSPSPYAFTDHYYSGYYYPPPPPRSMYDRASNYGLPSGPSAPVDAFSSIDHKQPPLAPPRFSNYGPPPSGPSAPVDAFLVTEYKPQAPPMGSRLSSYGVPNGPSAPVDYSPYDHRQLQKTMGGLSLEEERAAAERSESDFGARPNYSYGRDYRREC", "length": 352, "header": "tr|Q9LNV0-1|Q9LNV0_ARATH Isoform 1 of Calcium-dependent lipid-binding (CaLB domain) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LNV0-1" }, "isoforms": [ { "isoform_ac": "Q9LNV0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNV0/entry#Q9LNV0-1", "sequence": { "sequence": "MTSSEPLDLVVTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPLTRSVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELVRPSGRPQGKIRLKLAIKDRPIPPPQHPPPRPQSQPLDYYSAPQGNHYYSPSPPPPPPPQAPITAPSPQRDYREFSQSPSPSPYAFTDHYYSGYYYPPPPPRSMYDRASNYGLPSGPSAPVDAFSSIDHKQPPLAPPRFSNYGPPPSGPSAPVDAFLVTEYKPQAPPMGSRLSSYGVPNGPSAPVDYSPYDHRQLQKTMGGLSLEEERAAAERSESDFGARPNYSYGRDYRREC", "length": 352, "header": "tr|Q9LNV0-1|Q9LNV0_ARATH Isoform 1 of Calcium-dependent lipid-binding (CaLB domain) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LNV0-1" }, "locus": { "chromosome": "1", "start_pos": 2247112, "end_pos": 2248961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G07310.1", "url": "https://www.ensemblgenomes.org/id/AT1G07310.1" }, { "database": "Ensembl Peptide", "id": "AT1G07310.1", "url": "https://www.ensemblgenomes.org/id/AT1G07310.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 321, "end_pos": 321, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LNV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNV0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser321" }, { "start_pos": 332, "end_pos": 332, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LNV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNV0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser332" }, { "start_pos": 334, "end_pos": 334, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", 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Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9LNV0", "url": "https://www.uniprot.org/uniprotkb/Q9LNV0" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LNV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LNV0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LNV0", "url": "https://www.uniprot.org/uniprotkb/Q9LNV0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9LNV0", "url": 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"MNSVGVFRKEEIDGKSFLVYTLTQTDNPTSSGEALAMDSGGDDLPLQPLFFCPAARINFHKLRLKMHNHDDDDDAEDDDNGDDKEDGDDDNKGDDGDDDNEDDNEDDDNDDDDDDDDDDDDDDDDDDDDGDDDNEDGDCDDDDGDLLLPFDSTPHFPSTRSGDQQGESLLDCNHPDVCKLPVVPLFWCNNKERSTVGFECGACKMTTLCESYFACLQCQGKFHKECVESPPEIKHPSHPFHSLRLCSFQTRLTSGCCRKITFGMFYQCTTCNLSMHPVCAMRPVPLVVDHPKSHPHPLSFFPTQASTVCHICAKIKHLDPTYICIQCVFVIHKGCMGFPHTIRISRHPHRISFTSSLPSRTLSCGVCHQQVDNNYGAYSCNNCDGYFVHSKCAIHPKVWDGKELEGVPEEDDLIDDGEPFERISDGIIHHPFHSHHLRHEMSITYDESKYCQGCALPIYEGQFYSCMECDFILHDSCANAPRMKRYPLYPHPITLKFATVRNNSFTSQFRCAVCDRHGNGFFYEHHGEDKMFRLDLRCALITEPLVYQGHMHPLFLLWDDTESLISCQMCKKKSYYSQLFCLECEYSLCLRCVTFPYKVRYKHDSHFLTICDVKEASDELDWCDICEGKIEEEKEKEYNWDDRERELRFYKCNDCSTALHVDCLLGVDMYMKPITDYISVITLTSKGTKRKDLWIFLNNSLTRPICTTCLSRCPFPIFFKGHTKIFCSLYCSED", "length": 734, "header": "tr|Q9LNZ0-1|Q9LNZ0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LNZ0-1" }, "isoforms": [ { "isoform_ac": "Q9LNZ0-1", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0/entry#Q9LNZ0-1", "sequence": { "sequence": "MNSVGVFRKEEIDGKSFLVYTLTQTDNPTSSGEALAMDSGGDDLPLQPLFFCPAARINFHKLRLKMHNHDDDDDAEDDDNGDDKEDGDDDNKGDDGDDDNEDDNEDDDNDDDDDDDDDDDDDDDDDDDDGDDDNEDGDCDDDDGDLLLPFDSTPHFPSTRSGDQQGESLLDCNHPDVCKLPVVPLFWCNNKERSTVGFECGACKMTTLCESYFACLQCQGKFHKECVESPPEIKHPSHPFHSLRLCSFQTRLTSGCCRKITFGMFYQCTTCNLSMHPVCAMRPVPLVVDHPKSHPHPLSFFPTQASTVCHICAKIKHLDPTYICIQCVFVIHKGCMGFPHTIRISRHPHRISFTSSLPSRTLSCGVCHQQVDNNYGAYSCNNCDGYFVHSKCAIHPKVWDGKELEGVPEEDDLIDDGEPFERISDGIIHHPFHSHHLRHEMSITYDESKYCQGCALPIYEGQFYSCMECDFILHDSCANAPRMKRYPLYPHPITLKFATVRNNSFTSQFRCAVCDRHGNGFFYEHHGEDKMFRLDLRCALITEPLVYQGHMHPLFLLWDDTESLISCQMCKKKSYYSQLFCLECEYSLCLRCVTFPYKVRYKHDSHFLTICDVKEASDELDWCDICEGKIEEEKEKEYNWDDRERELRFYKCNDCSTALHVDCLLGVDMYMKPITDYISVITLTSKGTKRKDLWIFLNNSLTRPICTTCLSRCPFPIFFKGHTKIFCSLYCSED", "length": 734, "header": "tr|Q9LNZ0-1|Q9LNZ0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=Q9LNZ0-1" }, "locus": { "chromosome": "1", "start_pos": 16739192, "end_pos": 16741652, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G44050.1", "url": "https://www.ensemblgenomes.org/id/AT1G44050.1" }, { "database": "Ensembl Peptide", "id": "AT1G44050.1", "url": "https://www.ensemblgenomes.org/id/AT1G44050.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9LNZ0", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LNZ0", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G44050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G44050", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9LNZ0", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q9LNZ0", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" }, { "start_pos": 698, "end_pos": 700, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "Q9LNZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9LNZ0" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 429, "end_pos": 485, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 }, { "start_pos": 502, "end_pos": 504 }, { "start_pos": 698, "end_pos": 700 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] } ]